bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC dataPapers that mentioned: 276
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bioconductor: twoddpcr
Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting moleculesPapers that mentioned: 2
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pypi: ariadne
Ariadne is a Python library for implementing GraphQL servers.Papers that mentioned: 2
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pypi: amplikyzer2
amplicon methylation analyzer for SFF (flowgrams) and FASTQ (MiSeq) filesPapers that mentioned: 1
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pypi: EmoPy
A deep neural net toolkit for emotion analysis via Facial Expression Recognition (FER)Papers that mentioned: 1
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pypi: amplikyzer
an amplicon methylation analyzer for flowgrams (SFF files)Papers that mentioned: 2
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bioconductor: infercnv
Infer Copy Number Variation from Single-Cell RNA-Seq DataPapers that mentioned: 4
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cran: gstat
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and SimulationPapers that mentioned: 138
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bioconductor: SNPRelate
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP DataPapers that mentioned: 204
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bioconductor: MoonlightR
Identify oncogenes and tumor suppressor genes from omics dataPapers that mentioned: 2
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bioconductor: msgbsR
msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functionsPapers that mentioned: 3
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bioconductor: esATAC
An Easy-to-use Systematic pipeline for ATACseq data analysisPapers that mentioned: 4
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cran: edina
Bayesian Estimation of an Exploratory Deterministic Input, Noisy and Gate ModelPapers that mentioned: 1
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cran: kmer
Fast K-Mer Counting and Clustering for Biological Sequence AnalysisPapers that mentioned: 240
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bioconductor: dcanr
Differential co-expression/association network analysisPapers that mentioned: 3
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pypi: hybridLFPy
methods to calculate extracellular signals of neural activity from spike events from spiking neuron networksPapers that mentioned: 2
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bioconductor: MSnbase
Base Functions and Classes for Mass Spectrometry and ProteomicsPapers that mentioned: 24
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bioconductor: aroma.light
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data TypesPapers that mentioned: 4
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cran: dynamac
Dynamic Simulation and Testing for Single-Equation ARDL ModelsPapers that mentioned: 1
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bioconductor: gage
Generally Applicable Gene-set Enrichment for Pathway AnalysisPapers that mentioned: 45
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bioconductor: IMMAN
Interlog protein network reconstruction by Mapping and Mining ANalysisPapers that mentioned: 8
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bioconductor: psichomics
Graphical Interface for Alternative Splicing Quantification, Analysis and VisualisationPapers that mentioned: 1
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bioconductor: ILoReg
ILoReg: a tool for high-resolution cell population identification from scRNA-Seq dataPapers that mentioned: 1
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bioconductor: iCOBRA
Comparison and Visualization of Ranking and Assignment MethodsPapers that mentioned: 5
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cran: adaptMT
Adaptive P-Value Thresholding for Multiple Hypothesis Testing with Side InformationPapers that mentioned: 1
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bioconductor: NormalyzerDE
Evaluation of normalization methods and calculation of differential expression analysis statisticsPapers that mentioned: 8
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cran: bpbounds
Nonparametric Bounds for the Average Causal Effect Due to Balke and Pearl and ExtensionsPapers that mentioned: 1
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bioconductor: icetea
Integrating Cap Enrichment with Transcript Expression AnalysisPapers that mentioned: 2
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bioconductor: MetaCyto
MetaCyto: A package for meta-analysis of cytometry dataPapers that mentioned: 3
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cran: SimSurvey
Test Surveys by Simulating Spatially-Correlated PopulationsPapers that mentioned: 1
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cran: ddpcr
Analysis and Visualization of Droplet Digital PCR in R and on the WebPapers that mentioned: 3
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bioconductor: MethCP
Differential methylation anlsysis for bisulfite sequencing dataPapers that mentioned: 1
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bioconductor: multiGSEA
Combining GSEA-based pathway enrichment with multi omics data integrationPapers that mentioned: 1
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bioconductor: ASSIGN
Adaptive Signature Selection and InteGratioN (ASSIGN)Papers that mentioned: 54
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