Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

pypi projects 9,932

pypi: akkadian
Translating Akkadian signs to transliteration using NLP algorithms
Papers that mentioned: 1
pypi: albatradis
Comparitive transposon mutagenesis experiment analysis
Papers that mentioned: 1
pypi: alder
Asynchrounous Lexical Distributed Event Roster
Papers that mentioned: 1
pypi: alert
A quick package to raise alerts for long running programs.
Papers that mentioned: 1
pypi: alfa
A simple software to get a quick overview of features composing NGS dataset(s).
Papers that mentioned: 1
pypi: alg
Algorithm Learning Group.
Papers that mentioned: 1
pypi: amplikyzer2
amplicon methylation analyzer for SFF (flowgrams) and FASTQ (MiSeq) files
Papers that mentioned: 1
pypi: animapp
A package to track the movement of an object (a small animal) in a video
Papers that mentioned: 1
pypi: anhima
Exploration and Analysis of genetic variation data.
Papers that mentioned: 1
pypi: alphashape
Toolbox for generating alpha shapes.
Papers that mentioned: 1
pypi: alns
A flexible implementation of the adaptive large neighbourhood search (ALNS) algorithm.
Papers that mentioned: 1
pypi: aloha
Aloha - a versatile Python utility package for building services
Papers that mentioned: 1
pypi: alphatims
A Python package to index Bruker TimsTOF raw data for fast and easy accession and visualization
Papers that mentioned: 1
pypi: als
Python library for Alternating Least Squares (ALS)
Papers that mentioned: 1
pypi: allcopol
AllCoPol: Inferring allele co-ancestry in polyploids
Papers that mentioned: 1
pypi: ambiguous
python dark magic
Papers that mentioned: 1
pypi: altimeter
Graph AWS resources in Neptune
Papers that mentioned: 1
pypi: ambit
Take control of your Palette.
Papers that mentioned: 1
pypi: amer
Papers that mentioned: 1
pypi: Ammonia
task queue
Papers that mentioned: 1
pypi: ampgo
Adaptive Memory Programming for Global Optimization
Papers that mentioned: 1
pypi: amphora
AMQP RPC for services based on gevent
Papers that mentioned: 1
pypi: analyzers
Analysers for elasticsearch for best suggestion and auto complete
Papers that mentioned: 1
pypi: animus
Animus is a minimalistic framework to run machine learning experiments.
Papers that mentioned: 1
pypi: aniposelib
An easy-to-use library for calibrating cameras in python, made for Anipose
Papers that mentioned: 1
pypi: anncolvar
Coding collective variables by artificial neural networks
Papers that mentioned: 1
pypi: anndata
Annotated data.
Papers that mentioned: 1
pypi: APScheduler
In-process task scheduler with Cron-like capabilities
Papers that mentioned: 1
pypi: bcbio-gff
Read and write Generic Feature Format (GFF) with Biopython integration.
Papers that mentioned: 1
pypi: bcdi
BCDI: tools for pre(post)-processing Bragg and
Papers that mentioned: 1
pypi: bcloud
Baidu Pan client for Linux Desktop users
Papers that mentioned: 1
pypi: appdirs
A small Python module for determining appropriate platform-specific dirs, e.g. a "user data dir".
Papers that mentioned: 1
pypi: Arase
A module for downloading and reading Arase spacecraft data.
Papers that mentioned: 1
pypi: applicake
A framework that simplifies the wrapping of external tools by standardizing input parameters, logging messages and output streams.
Papers that mentioned: 1
pypi: apyori
Simple Apriori algorithm Implementation.
Papers that mentioned: 1
pypi: apg
Awesome project generation tool
Papers that mentioned: 1
pypi: antispam
Bayesian anti-spam classifier written in Python.
Papers that mentioned: 1
pypi: Apack
Papers that mentioned: 1
pypi: ants
A human spider framework base on django
Papers that mentioned: 1
pypi: antspynet
A collection of deep learning architectures ported to the python language and tools for basic medical image processing.
Papers that mentioned: 1
pypi: anx
Papers that mentioned: 1
pypi: annoy
Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk.
Papers that mentioned: 1
pypi: aoctools
A CLI for working with Advent of Code (AOC) problems
Papers that mentioned: 1
pypi: apikey
save and load API keys from a file
Papers that mentioned: 1
pypi: approx
Set of tools for comparing complex objects
Papers that mentioned: 1
pypi: aqua
Python 3 client for Aqua's CSP Platform
Papers that mentioned: 1
pypi: aquacrop
Soil-Crop-Water model based on AquaCrop-OS.
Papers that mentioned: 1
pypi: arcade
Arcade Game Development Library
Papers that mentioned: 1
pypi: baycomp
Bayesian tests for comparison of classifiers
Papers that mentioned: 1
pypi: BatchTINTV3
BatchTINTV3 - GUI created to more efficiently sort Axona/Tint data.
Papers that mentioned: 1
pypi: baton
Python wrapper for baton.
Papers that mentioned: 1
pypi: battery
Command Line Utilities in Python
Papers that mentioned: 1
pypi: bayes
Bayes classification implementation
Papers that mentioned: 1
pypi: BayesASE
Bayesian analysis of allele specific expression
Papers that mentioned: 1
pypi: bigbrain
A toolbox for learning anything and everything from data.
Papers that mentioned: 1
pypi: bebop
Solr object mapping and schema generation without all the XML
Papers that mentioned: 1
pypi: bet
A toolkit for data-consistent stochastic problems.
Papers that mentioned: 1
pypi: beditor
A computational workflow for designing libraries of guide RNAs for CRISPR base editing
Papers that mentioned: 1
pypi: bedserver
A fast and simple bedfile server
Papers that mentioned: 1
pypi: BenchExec
A Framework for Reliable Benchmarking and Resource Measurement.
Papers that mentioned: 1
pypi: binding
Bindable properties for Python
Papers that mentioned: 1
pypi: bifixer

Papers that mentioned: 1
pypi: BFEE2
Binding Free Energy Estimator 2
Papers that mentioned: 1
pypi: Beaver
python daemon that munches on logs and sends their contents to logstash
Papers that mentioned: 1
pypi: BigNumber
This package contains implementation of the library "BigNumber".
Papers that mentioned: 1
pypi: bibexcel
A python executable to get JSON and Excel data from a bibexcel text file
Papers that mentioned: 1
pypi: beeline
Simple Microservice Application Runtime Toolkit
Papers that mentioned: 1
pypi: bff
Best Fancy Functions, your Best Friend Forever
Papers that mentioned: 1
pypi: Beetroot
A General Purpose Utility package for Python 3
Papers that mentioned: 1
pypi: bf
File interface library
Papers that mentioned: 1
pypi: biggest
A utility for finding the biggest files and/or directories in a directory tree
Papers that mentioned: 1
pypi: bfit
β-NMR and β-NQR Data Analysis
Papers that mentioned: 1
pypi: bg
Implementation of Breakpoint Graph data structure
Papers that mentioned: 1
pypi: bg-space
Anatomical space conventions made easy
Papers that mentioned: 1
pypi: bh
Fuzzy Linear Discriminant Analysis
Papers that mentioned: 1
pypi: bhtsne
Python module for Barnes-Hut implementation of t-SNE (Cython)
Papers that mentioned: 1
pypi: bibtexparser
Bibtex parser for python 3
Papers that mentioned: 1
pypi: bidsify
bidsify: Converts your (raw) data to the BIDS-format
Papers that mentioned: 1
pypi: BiEntropy
High-performance implementations of BiEntropy metrics proposed by Grenville J. Croll
Papers that mentioned: 1
pypi: bigmax
Big MAX - MAX Web Administration Interface
Papers that mentioned: 1
pypi: BigQuery-Python
Simple Python client for interacting with Google BigQuery.
Papers that mentioned: 1
pypi: bigraph
Python package for link prediction in bipartite graphs and networks
Papers that mentioned: 1
pypi: bigsi
BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data
Papers that mentioned: 1
pypi: Bilu
Asynchronous ODM (Object Document Mapper) for MongoDB
Papers that mentioned: 1
pypi: bim
Benchmark interpretability methods.
Papers that mentioned: 1
pypi: binomialRF
The binomialRF package is a random forest-based feature selection package that provides a feature selection algorithm to be used in randomForest classifiers.
Papers that mentioned: 1
pypi: bins
Papers that mentioned: 1
pypi: binvox
Library for loading & saving the Binvox files
Papers that mentioned: 1
pypi: bcrypt
Modern password hashing for your software and your servers
Papers that mentioned: 1
pypi: biobox
Biobox provides a collection of data structures and methods for loading, manipulating and analyzing atomistic and pseudoatomistic structures.
Papers that mentioned: 1
pypi: bioc
bioc - Processing BioC, Brat, and PubTator with Python.
Papers that mentioned: 1
pypi: blocker
Volume provisioning in Ansible with a cinder-like frontend
Papers that mentioned: 1
pypi: blocks
Conversion tools for block devices
Papers that mentioned: 1
pypi: black
The uncompromising code formatter.
Papers that mentioned: 1
pypi: bitarray
efficient arrays of booleans -- C extension
Papers that mentioned: 1
pypi: bioconda2biocontainer
Tools to synchronize bioconda packages and versions with Biocontainer images
Papers that mentioned: 1
pypi: biopandas
Machine Learning Library Extensions
Papers that mentioned: 1
pypi: BioExp
Deep Learning model analysis toolbox
Papers that mentioned: 1
pypi: blog
A static website generator
Papers that mentioned: 1
pypi: blosc
Blosc data compressor
Papers that mentioned: 1