Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

pypi projects 9,932

pypi: preprocessor
Preprocessor for files.
Papers that mentioned: 1
pypi: GeoLocation
Papers that mentioned: 1
pypi: presence
Presence
Papers that mentioned: 1
pypi: ggtools
A package to handle the GRACE and GRACE-FO GSM data and GLDAS grid data
Papers that mentioned: 1
pypi: vertices
Convert an obj with n vertices into one with p vertices
Papers that mentioned: 1
pypi: primers
Create PCR primers with optimal lengths, tms, gc%s and free energies
Papers that mentioned: 1
pypi: prin
simplePrint
Papers that mentioned: 1
pypi: Vestige

Papers that mentioned: 1
pypi: prince
Factor analysis in Python: PCA, CA, MCA, MFA, FAMD, GPA
Papers that mentioned: 1
pypi: presto
A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
Papers that mentioned: 1
pypi: princeton
My princeton package
Papers that mentioned: 1
pypi: pretext
A package to author, build, and deploy PreTeXt projects.
Papers that mentioned: 1
pypi: protaccel
Package to infer kinetics from scRNA-seq/feature barcoding data.
Papers that mentioned: 1
pypi: EpiClass
Optimizing and predicting performance of DNA methylation biomarkers using sequence methylation density information.
Papers that mentioned: 1
pypi: ProsNet
A package for processing activPAL activity monitor data.
Papers that mentioned: 1
pypi: epicenter
Python Package for interacting with the Forio Epicenter Platform
Papers that mentioned: 1
pypi: vf
VF: Validation Functions (for Python dicts.)
Papers that mentioned: 1
pypi: youtil
Module to get youtube details
Papers that mentioned: 1
pypi: Printrun
Host software for 3D printers
Papers that mentioned: 1
pypi: etcetera
Sharing datasets via cloud storage
Papers that mentioned: 1
pypi: probability
Probability in Python 3
Papers that mentioned: 1
pypi: prizm

Papers that mentioned: 1
pypi: vhost
Tool for help creating virtual hosts
Papers that mentioned: 1
pypi: processes

Papers that mentioned: 1
pypi: prm
pip repository manager
Papers that mentioned: 1
pypi: pronto
Python frontend to ontologies.
Papers that mentioned: 1
pypi: proboscis
Extends Nose with certain TestNG like features.
Papers that mentioned: 1
pypi: prod
If they have sum(), why not product()
Papers that mentioned: 1
pypi: procedure
Simple way to use Interactor Pattern in python
Papers that mentioned: 1
pypi: ProDaMa

Papers that mentioned: 1
pypi: epa
Python wrapper for the multiple APIs available through the EPA's website.
Papers that mentioned: 1
pypi: prodigy
Papers that mentioned: 1
pypi: procfs
Python API for the Linux /proc virtual filesystem
Papers that mentioned: 1
pypi: epitopepredict
Python package for epitope prediction
Papers that mentioned: 1
pypi: procrustes
validation library
Papers that mentioned: 1
pypi: projection
Project Configuration
Papers that mentioned: 1
pypi: viax
Papers that mentioned: 1
pypi: ProjectManager
Project management for data analysis projects.
Papers that mentioned: 1
pypi: voting
Voting and election related functions.
Papers that mentioned: 1
pypi: prolog
Simple, robust features for expediting application logging configuration
Papers that mentioned: 1
pypi: proMAD
Semiquantitative densitometric measurement of protein microarrays
Papers that mentioned: 1
pypi: Propel
A package to deploy sites in virtualenv, run scripts, and deploy workers with supervisor
Papers that mentioned: 1
pypi: protosearch
Software for enumerating crystal structure prototypes to by used for active learning exploration with DFT and machine learning.
Papers that mentioned: 1
pypi: ProtParCon
ProtParCon - A framework for framework for processing molecular data and identifying parallel and convergent amino acid replacements.
Papers that mentioned: 1
pypi: you
My next dumb thing.
Papers that mentioned: 1
pypi: ptrans
A command line tool help you trans other lauguages to Chinese each other
Papers that mentioned: 1
pypi: PsychRNN
Easy-to-use package for the modeling and analysis of neural network dynamics, directed towards cognitive neuroscientists.
Papers that mentioned: 1
pypi: ptemcee
Parallel-tempered emcee.
Papers that mentioned: 1
pypi: propnet
A knowledge graph for Materials Science. Not yet ready for public use.
Papers that mentioned: 1
pypi: vice
Galactic Chemical Evolution Integrator
Papers that mentioned: 1
pypi: prosecco
Simple, extendable nlp engine that can extract data based on provided conditions.
Papers that mentioned: 1
pypi: protcomp
Python package to reconstruct protein complexes from protein pairwise interactions.
Papers that mentioned: 1
pypi: GeneXpress
A unified set of analysis and visualization tools intended for gene expression studies in Python, and an interface to the R ExpressionSet.
Papers that mentioned: 1
pypi: genetest
A package to process and analyze genotypic and phenotypic data.
Papers that mentioned: 1
pypi: gene-graph-lib
mini-library for GeneGraph tool and GCB project
Papers that mentioned: 1
pypi: proteus
Library to access Tryton server as a client
Papers that mentioned: 1
pypi: genepy3d
Python Library for 3D Quantitative Geometry in Computation Microscopy
Papers that mentioned: 1
pypi: gencove
Gencove API and CLI tool
Papers that mentioned: 1
pypi: proton
Proton Template Engine
Papers that mentioned: 1
pypi: prov
A library for W3C Provenance Data Model supporting PROV-JSON, PROV-XML and PROV-O (RDF)
Papers that mentioned: 1
pypi: GENDIS
Contains an implementation (sklearn API) of the algorithm proposed in "GENDIS: GEnetic DIscovery of Shapelets" and code to reproduce all experiments.
Papers that mentioned: 1
pypi: gemmr
Generative Modeling of Multivariate Relationships
Papers that mentioned: 1
pypi: ps_mem
A utility to report core memory usage per program
Papers that mentioned: 1
pypi: Proxi
Python Library for Proximity Network Inference.
Papers that mentioned: 1
pypi: proxima
Pythonic Makefile
Papers that mentioned: 1
pypi: gemmi
library for structural biology
Papers that mentioned: 1
pypi: proxmox
Papers that mentioned: 1
pypi: psearch
PSearch: ligand-based pharmacophore modeling and screening
Papers that mentioned: 1
pypi: PSNN
Python Simple Neural Network - PSNN is python3 lib for machine learning
Papers that mentioned: 1
pypi: pter
Console UI to manage your todo.txt file(s).
Papers that mentioned: 1
pypi: genepy
Simple genetic programming library using tree representation for individuals
Papers that mentioned: 1
pypi: vida
Python binding for Vida data visualizations
Papers that mentioned: 1
pypi: gdsCAD
A simple Python package for creating or reading GDSII layout files.
Papers that mentioned: 1
pypi: pseq
A framework for parallel processing of sequences.
Papers that mentioned: 1
pypi: yuma
simple permission.
Papers that mentioned: 1
pypi: geemap
A Python package for interactive mapping using Google Earth Engine and ipyleaflet
Papers that mentioned: 1
pypi: pruner
A CLI tool for pruning your overgrown requirements file
Papers that mentioned: 1
pypi: ptitprince
A Python implementation of Rainclouds, originally on R, ggplot2. Written on top of seaborn.
Papers that mentioned: 1
pypi: pubsub
Simple Python PubSub
Papers that mentioned: 1
pypi: geck
UNKNOWN
Papers that mentioned: 1
pypi: generics
A classy toolkit designed with OOP in mind.
Papers that mentioned: 1
pypi: ptools
Cross Platform Process Infomation (cmdline, environ) and Management
Papers that mentioned: 1
pypi: gec
A ECC implementation via oop style abstract algebra
Papers that mentioned: 1
pypi: gcp
An advanced file copy tool loosely inspired from cp
Papers that mentioned: 1
pypi: viscm
A colormap tool
Papers that mentioned: 1
pypi: psamm
PSAMM metabolic modeling tools
Papers that mentioned: 1
pypi: psc
A cli credential/secret storage utility using EC2 SSM Parameter Store
Papers that mentioned: 1
pypi: VideoAnalysis
Widgets for analysis of worm videos
Papers that mentioned: 1
pypi: eQTLseq
Hierarchical probabilistic models for multiple gene/variant associations based on NGS data
Papers that mentioned: 1
pypi: genemunge
Tools for munging genomics data
Papers that mentioned: 1
pypi: gdlib
This is an opinionated gamedev library that is developed within the Software- and Game Development lecture at Stuttgart Media University.
Papers that mentioned: 1
pypi: pssm
Python library for state-space models
Papers that mentioned: 1
pypi: PureMVC
PureMVC Python Framework
Papers that mentioned: 1
pypi: Moliere
Psycopg wrapper
Papers that mentioned: 1
pypi: mod-wsgi
Installer for Apache/mod_wsgi.
Papers that mentioned: 1
pypi: corner
Make some beautiful corner plots
Papers that mentioned: 1
pypi: JNJ
Package providing a Jinja2-based template framework.
Papers that mentioned: 1
pypi: jumpstart
UNKNOWN
Papers that mentioned: 1
pypi: jyutping
Python tool to convert Chinese characters to Jyutping.
Papers that mentioned: 1
pypi: kali
Simple, reliable, single-threaded HTTP service in Python. Aimed at serving web application to localhost as alternative to desktop application development.
Papers that mentioned: 1