Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

pypi projects 9,932

pypi: ptemcee
Parallel-tempered emcee.
Papers that mentioned: 1
pypi: propnet
A knowledge graph for Materials Science. Not yet ready for public use.
Papers that mentioned: 1
pypi: vice
Galactic Chemical Evolution Integrator
Papers that mentioned: 1
pypi: prosecco
Simple, extendable nlp engine that can extract data based on provided conditions.
Papers that mentioned: 1
pypi: protcomp
Python package to reconstruct protein complexes from protein pairwise interactions.
Papers that mentioned: 1
pypi: GeneXpress
A unified set of analysis and visualization tools intended for gene expression studies in Python, and an interface to the R ExpressionSet.
Papers that mentioned: 1
pypi: genetest
A package to process and analyze genotypic and phenotypic data.
Papers that mentioned: 1
pypi: gene-graph-lib
mini-library for GeneGraph tool and GCB project
Papers that mentioned: 1
pypi: proteus
Library to access Tryton server as a client
Papers that mentioned: 1
pypi: genepy3d
Python Library for 3D Quantitative Geometry in Computation Microscopy
Papers that mentioned: 1
pypi: gencove
Gencove API and CLI tool
Papers that mentioned: 1
pypi: proton
Proton Template Engine
Papers that mentioned: 1
pypi: prov
A library for W3C Provenance Data Model supporting PROV-JSON, PROV-XML and PROV-O (RDF)
Papers that mentioned: 1
pypi: GENDIS
Contains an implementation (sklearn API) of the algorithm proposed in "GENDIS: GEnetic DIscovery of Shapelets" and code to reproduce all experiments.
Papers that mentioned: 1
pypi: gemmr
Generative Modeling of Multivariate Relationships
Papers that mentioned: 1
pypi: ps_mem
A utility to report core memory usage per program
Papers that mentioned: 1
pypi: Proxi
Python Library for Proximity Network Inference.
Papers that mentioned: 1
pypi: proxima
Pythonic Makefile
Papers that mentioned: 1
pypi: gemmi
library for structural biology
Papers that mentioned: 1
pypi: proxmox
Papers that mentioned: 1
pypi: psearch
PSearch: ligand-based pharmacophore modeling and screening
Papers that mentioned: 1
pypi: PSNN
Python Simple Neural Network - PSNN is python3 lib for machine learning
Papers that mentioned: 1
pypi: pter
Console UI to manage your todo.txt file(s).
Papers that mentioned: 1
pypi: genepy
Simple genetic programming library using tree representation for individuals
Papers that mentioned: 1
pypi: vida
Python binding for Vida data visualizations
Papers that mentioned: 1
pypi: gdsCAD
A simple Python package for creating or reading GDSII layout files.
Papers that mentioned: 1
pypi: pseq
A framework for parallel processing of sequences.
Papers that mentioned: 1
pypi: yuma
simple permission.
Papers that mentioned: 1
pypi: geemap
A Python package for interactive mapping using Google Earth Engine and ipyleaflet
Papers that mentioned: 1
pypi: pruner
A CLI tool for pruning your overgrown requirements file
Papers that mentioned: 1
pypi: ptitprince
A Python implementation of Rainclouds, originally on R, ggplot2. Written on top of seaborn.
Papers that mentioned: 1
pypi: pubsub
Simple Python PubSub
Papers that mentioned: 1
pypi: geck
UNKNOWN
Papers that mentioned: 1
pypi: generics
A classy toolkit designed with OOP in mind.
Papers that mentioned: 1
pypi: ptools
Cross Platform Process Infomation (cmdline, environ) and Management
Papers that mentioned: 1
pypi: gec
A ECC implementation via oop style abstract algebra
Papers that mentioned: 1
pypi: gcp
An advanced file copy tool loosely inspired from cp
Papers that mentioned: 1
pypi: viscm
A colormap tool
Papers that mentioned: 1
pypi: psamm
PSAMM metabolic modeling tools
Papers that mentioned: 1
pypi: psc
A cli credential/secret storage utility using EC2 SSM Parameter Store
Papers that mentioned: 1
pypi: VideoAnalysis
Widgets for analysis of worm videos
Papers that mentioned: 1
pypi: eQTLseq
Hierarchical probabilistic models for multiple gene/variant associations based on NGS data
Papers that mentioned: 1
pypi: genemunge
Tools for munging genomics data
Papers that mentioned: 1
pypi: gdlib
This is an opinionated gamedev library that is developed within the Software- and Game Development lecture at Stuttgart Media University.
Papers that mentioned: 1
pypi: pssm
Python library for state-space models
Papers that mentioned: 1
pypi: PureMVC
PureMVC Python Framework
Papers that mentioned: 1
pypi: gcm
Python client for Google Cloud Messaging (Android GCM)
Papers that mentioned: 1
pypi: pstack
Tool to print python thread and greenlet stacks
Papers that mentioned: 1
pypi: psyche

Papers that mentioned: 1
pypi: pstat
UNKNOWN
Papers that mentioned: 1
pypi: gcluster
Clustering based on graph algorithms
Papers that mentioned: 1
pypi: gbif
Basic and experimental Gbif Taxon API library for Python
Papers that mentioned: 1
pypi: psychometrics
psychometrics is a library for psychological measurement experiment
Papers that mentioned: 1
pypi: gcloud
API Client library for Google Cloud
Papers that mentioned: 1
pypi: gbd
Test module
Papers that mentioned: 1
pypi: gbasis

Papers that mentioned: 1
pypi: gcl
Generic Configuration Language
Papers that mentioned: 1
pypi: Gavagai
A Gavagai API helper library.
Papers that mentioned: 1
pypi: gdecomp
Gaussian Decompostion of a LiDAR Waveform
Papers that mentioned: 1
pypi: gatool
Utility for console applications parameters adjustment with genetic algorithm
Papers that mentioned: 1
pypi: yt
An analysis and visualization toolkit for volumetric data
Papers that mentioned: 1
pypi: youtube
Papers that mentioned: 1
pypi: gemstone
Build microservices with Python
Papers that mentioned: 1
pypi: VISIBLE
Matched filtering for interferometric data
Papers that mentioned: 1
pypi: publish
Publish python package to PyPI and Github
Papers that mentioned: 1
pypi: gather
A gatherer
Papers that mentioned: 1
pypi: vidstab
Video Stabilization using OpenCV
Papers that mentioned: 1
pypi: gender
Get gender from name and email address
Papers that mentioned: 1
pypi: gbseqextractor
Extract any CDS or rNRA or tRNA DNA sequences of genes from Genbank file.
Papers that mentioned: 1
pypi: gat
GenomicAssocationTester
Papers that mentioned: 1
pypi: GEMEditor
A graphical editor for the reconstruction, annotation and testing of genome-scale models
Papers that mentioned: 1
pypi: PsyLab
PsyLab: Psychophysics Lab
Papers that mentioned: 1
pypi: Psychotic
Cross-platform pure Python performance optimizer and 2008 April Fools joke.
Papers that mentioned: 1
pypi: Gask
A git backed task management system
Papers that mentioned: 1
pypi: pt

Papers that mentioned: 1
pypi: pv
minimal wsgi framework
Papers that mentioned: 1
pypi: gems
Python utilities for data manipulation and management.
Papers that mentioned: 1
pypi: vpython
VPython for Jupyter Notebook
Papers that mentioned: 1
pypi: garnett
Samples, parsers, and writers for formats used in the Glotzer Group.
Papers that mentioned: 1
pypi: gar
gar brings context-specific tests to nose
Papers that mentioned: 1
pypi: ptrace
C extension providing access to ptrace(2)
Papers that mentioned: 1
pypi: pulsar
Event driven concurrent framework for Python
Papers that mentioned: 1
pypi: gap-stat
Python implementation of the gap statistic with optional Rust optimizations.
Papers that mentioned: 1
pypi: pulse2percept
A Python-based simulation framework for bionic vision
Papers that mentioned: 1
pypi: gappy
Python framework for Gap Service API
Papers that mentioned: 1
pypi: gapfill
GapFill: A Python module of gap filling functions for motion capture marker data
Papers that mentioned: 1
pypi: pvr
Papers that mentioned: 1
pypi: yule
A logging package for python
Papers that mentioned: 1
pypi: py2
Turns Python into a versatile command line utility
Papers that mentioned: 1
pypi: GAKTpore
A stereological analysis tool for porous materials
Papers that mentioned: 1
pypi: PWH
Web framework for code to be moved between ASP/PSP with an integrated database ORM
Papers that mentioned: 1
pypi: ganesh
trying to upload it to pypi
Papers that mentioned: 1
pypi: eom
Experimental OpenStack WSGI Middleware
Papers that mentioned: 1
pypi: galaxy-lib
Subset of Galaxy (http://galaxyproject.org/) core code base designed to be used a library.
Papers that mentioned: 1
pypi: vienna
a short python wrapper for vienna tools
Papers that mentioned: 1
pypi: eo-learn
Earth observation processing framework for machine learning in Python
Papers that mentioned: 1
pypi: pych
Python 2ch API client.
Papers that mentioned: 1
pypi: fwrite
Create files of the desired size
Papers that mentioned: 1
pypi: galaxyxml
Galaxy XML generation library
Papers that mentioned: 1
pypi: EpiTator
Annotators for extracting epidemiological information from text.
Papers that mentioned: 1