pypi: scipy | Projects | Ecosyste.ms: Papers

10.3389/fnins.2020.00052

Diffeomorphic Registration With Intensity Transformation and Missing Data: Application to 3D Digital Pathology of Alzheimer's Disease
Cited by: 27
Author(s): Daniel J. Tward, Timothy Brown, Yusuke Kageyama, Jaymin Patel, Zhipeng Hou, Susumu Mori, Marilyn Albert, Juan C. Troncoso, Michael I. Miller
Software Mentions: 1
Published: almost 5 years ago

10.3390/s20205753

Coaxiality Evaluation of Coaxial Imaging System with Concentric Silicon–Glass Hybrid Lens for Thermal and Color Imaging
Cited by: 10
Author(s): Tomoyuki Takahata
Software Mentions: 1
Published: about 4 years ago

10.3389/fnins.2018.00881

Spectral Properties of Brain Activity Under Two Anesthetics and Their Potential for Inducing Natural Sleep in Birds
Cited by: 4
Author(s): Ryan K. Tisdale, Laura Tieri, Niels Christian Rattenborg, Gabriël J. L. Beckers, John A. Lesku
Software Mentions: 1
Published: almost 6 years ago

10.3762/bjnano.6.36

Dynamic force microscopy simulator (dForce): A tool for planning and understanding tapping and bimodal AFM experiments
Cited by: 28
Author(s): Horacio Andrés Vargas Guzmán, Pablo D. García, Ricardo García García
Software Mentions: 1
Published: almost 10 years ago

10.1136/bmjopen-2015-008457

Developing and validating a risk prediction model for acute care based on frailty syndromes
Cited by: 46
Author(s): Jty Soong, Alan J Poots, Shelley A. Scott, K. W. Donald, Derek Bell
Software Mentions: 1
Published: about 9 years ago

10.3390/s21020540

Towards Providing Effective Data-Driven Responses to Predict the Covid-19 in São Paulo and Brazil
Cited by: 22
Author(s): Fabio Amaral, Wallace Casaca, Cassio M. Oishi, José Alberto Cuminato
Software Mentions: 1
Published: almost 4 years ago

10.3389/fninf.2018.00072

Generalized Cross-Frequency Decomposition: A Method for the Extraction of Neuronal Components Coupled at Different Frequencies
Cited by: 9
Author(s): Denis Volk, Igor V. Dubinin, A. S. Myasnikova, Boris Gutkin, Vadim V. Nikulin
Software Mentions: 1
Published: about 6 years ago

10.3390/s21051909

Automatic Ankle Angle Detection by Integrated RGB and Depth Camera System
Cited by: 5
Author(s): Guillermo Díaz-San Martín, Luis Reyes-Gónzalez, Sergio Sainz-Ruiz, Luis Rodŕıguez-Cobo, José Miguel López‐Higuera
Software Mentions: 1
Published: over 3 years ago

10.3390/s21082692

Improved Direction-of-Arrival Estimation of an Acoustic Source Using Support Vector Regression and Signal Correlation
Cited by: 6
Author(s): Feroz Alam, Mohammed Usman, Hend I. Alkhammash, Mohd Wajid
Software Mentions: 1
Published: over 3 years ago

10.3390/s21082879

Heating Homes with Servers: Workload Scheduling for Heat Reuse in Distributed Data Centers
Cited by: 4
Author(s): Marcel Antal, Andrei-Alexandru Cristea, Victor-Alexandru Pădurean, Tudor Cioara, Ionut Anghel, Claudia Antal, Ioan Salomie, Nicolas Sainthérant
Software Mentions: 1
Published: over 3 years ago

10.3389/fncir.2015.00017

Spatial organization of excitatory synaptic inputs to layer 4 neurons in mouse primary auditory cortex
Cited by: 24
Author(s): Megan B. Kratz, Paul B. Manis
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.02167

The Sit-and-Wait Hypothesis in Bacterial Pathogens: A Theoretical Study of Durability and Virulence
Cited by: 15
Author(s): Liang Wang, Zhanzhong Liu, Shiyun Dai, Jiawei Yan, Michael J. Wise
Software Mentions: 1
Published: about 7 years ago

10.3390/s21165426

Using Machine Learning for Remote Behaviour Classification—Verifying Acceleration Data to Infer Feeding Events in Free-Ranging Cheetahs
Cited by: 2
Author(s): Lisa Giese, Jörg Melzheimer, Dirk P. Bockmühl, Bernd Wasiolka, Wanja Rast, Anne Berger, Bettina Wachter
Software Mentions: 1
Published: over 3 years ago

10.1186/s40360-021-00499-6

In-silico evaluation of Malawi essential medicines and reactive metabolites for potential drug-induced toxicities
Cited by: 1
Author(s): Ibrahim Chikowe, Alfred Chipanda Phiri, Kirios Patrick Mbewe, Dunstan Matekenya
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2016.01422

Shortening of the Lactobacillus paracasei subsp. paracasei BGNJ1-64 AggLb Protein Switches Its Activity from Auto-aggregation to Biofilm Formation
Cited by: 10
Author(s): Marija Miljković, Iris Bertani, Djordje Fira, Branko Jovčić, Katarina Novović, Vittorio Venturi, Milan Kojić
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2018.00033

A Microfluidics and Agent-Based Modeling Framework for Investigating Spatial Organization in Bacterial Colonies: The Case of Pseudomonas Aeruginosa and H1-Type VI Secretion Interactions
Cited by: 26
Author(s): John R. Wilmoth, Peter Doak, Andrea C. Timm, Michelle C. Halsted, J. D. Anderson, Marta Ginovart Gisbert, Clara Prats, Xavier Portell, Scott T. Retterer, Miguel Fuentes‐Cabrera
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.isci.2021.102879

Lineages of embryonic stem cells show non-Markovian state transitions
Cited by: 4
Author(s): Tee Udomlumleart, Sofia Hu, Salil Garg
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.717496

RAPID: A Rep-Seq Dataset Analysis Platform With an Integrated Antibody Database
Cited by: 1
Author(s): Yanfang Zhang, Tianjian Chen, Huikun Zeng, Xiujia Yang, Qingxian Xu, Yanxia Zhang, Yuan Chen, Minhui Wang, Yan Zhu, Chunhong Lan, Qilong Wang, Haipei Tang, Yan Zhang, Chengrui Wang, Wenxi Xie, Cuiyu Ma, Junjie Guan, Shixin Guo, Sen Chen, Wei Yang, Lai Wei, Jian Ren, Xueqing Yu, Zhenhai Zhang
Software Mentions: 1
Published: over 3 years ago

10.3389/fnhum.2021.669422

Neural Oscillation During Mental Imagery in Sport: An Olympic Sailor Case Study
Cited by: 3
Author(s): Dagmara Budnik–Przybylska, Adrian Kastrau, Patryk Jasik, Maria Kaźmierczak, Łukasz Doliński, Paweł Syty, Marta Łabuda, Jacek Przybylski, Selenia di Fronso, Maurizio Bertollo
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2020.636724

Quantifying the Stability of Coupled Genetic and Epigenetic Switches With Variational Methods
Cited by: 2
Author(s): Amogh Sood, Bin Zhang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2021.644378

A Novel Biomarker Identification Approach for Gastric Cancer Using Gene Expression and DNA Methylation Dataset
Cited by: 8
Author(s): Ge Zhang, Xue Zhang, CH Yan, Jianlin Wang, Huimin Luo
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2021.722198

NetGenes: A Database of Essential Genes Predicted Using Features From Interaction Networks
Cited by: 2
Author(s): Vimaladhasan Senthamizhan, Balaraman Ravindran, Karthik Raman
Software Mentions: 1
Published: about 3 years ago

10.1063/4.0000004

Controlled beams of shock-frozen, isolated, biological and artificial nanoparticles
Cited by: 6
Author(s): Amit K. Samanta, Muhamed Amin, Armando D. Estillore, Nils Roth, Lena Worbs, Daniel A. Horke, Jochen Küpper
Software Mentions: 1
Published: over 4 years ago

10.3389/fncom.2019.00026

A Theoretical Framework to Derive Simple, Firing-Rate-Dependent Mathematical Models of Synaptic Plasticity
Cited by: 9
Author(s): Janne Lappalainen, Juliane Herpich, Christian Tetzlaff
Software Mentions: 1
Published: over 5 years ago

10.1186/s12891-018-1955-4

Serum and synovial fluid cytokine profiling in hip osteoarthritis: distinct from knee osteoarthritis and correlated with pain
Cited by: 46
Author(s): Guomin Ren, Ian Lutz, P. Railton, J. Preston Wiley, Jenelle McAllister, James Powell, Roman Krawetz
Software Mentions: 1
Published: almost 7 years ago

10.3389/fncel.2021.667595

Automated in vivo Tracking of Cortical Oligodendrocytes
Cited by: 7
Author(s): Yu Xu, Cody L. Call, Jeremias Sulam, Dwight E. Bergles
Software Mentions: 1
Published: over 3 years ago

10.1186/1755-8794-7-50

Gene signatures ESC, MYC and ERG-fusion are early markers of a potentially dangerous subtype of prostate cancer
Cited by: 16
Author(s): Morten Rye, Helena Bertilsson, Finn Drabløs, Anders Angelsen, Tone Frost Bathen, May‐Britt Tessem
Software Mentions: 1
Published: over 10 years ago

10.3389/fcimb.2021.684606

Human Adenovirus Type 7 Infections in Hubei, China During 2018-2019: Epidemic Features and Genetic Characterization of the Detected Viruses
Cited by: 7
Author(s): Ying Liu, Decheng Wang, Jingjing Zhang, Peiqi Huang, Hui Du, Jiali Xu, Hebin Chen, Yi Yan, Hongwei Chen, Xin-Jiang Lu, Di Liu
Software Mentions: 1
Published: over 3 years ago

10.3389/fcimb.2021.634981

16S rDNA Full-Length Assembly Sequencing Technology Analysis of Intestinal Microbiome in Polycystic Ovary Syndrome
Cited by: 19
Author(s): Sitong Dong, Jiao jiao, Shuangshuo Jia, Gaoyu Li, Wei Zhang, Kai-Chien Yang, Zhen Wang, Chao Liu, Da Li, Xiuxia Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fbioe.2019.00156

SemNet: Using Local Features to Navigate the Biomedical Concept Graph
Cited by: 7
Author(s): Andrew R. Sedler, Cassie S. Mitchell
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2020.582602

Kinetic Analysis of Label-Free Microscale Collagen Gel Contraction Using Machine Learning-Aided Image Analysis
Cited by: 9
Author(s): Cameron Yamanishi, Eric Parigoris, Shuichi Takayama
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-019-6409-3

Network analysis exposes core functions in major lifestyles of fungal and oomycete plant pathogens
Cited by: 24
Author(s): Eswari P. J. Pandaranayaka, Omer Frenkel, Y. Elad, Dov Prusky, Amnon Harel
Software Mentions: 1
Published: almost 5 years ago

10.12688/f1000research.20162.1

Ethanol as a potential mosquito sample storage medium for RNA preservation
Cited by: 5
Author(s): Mirsha G. Torres, Allison M. Weakley, James Hibbert, Oscar D. Kirstein, Gregory C. Lanzaro, Lee Y
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-5164-1

Correcting palindromes in long reads after whole-genome amplification
Cited by: 15
Author(s): Sven Warris, Elio Schijlen, Henri van de Geest, Rahulsimham Vegesna, Thamara Hesselink, Bas te Lintel Hekkert, Gabino F. Sánchez-Pérez, Paul Medvedev, Kateryna D. Makova, Dick de Ridder
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-017-3742-2

Cattle genome-wide analysis reveals genetic signatures in trypanotolerant N’Dama
Cited by: 22
Author(s): Soojin Kim, Sojeong Ka, Jung-Woo Ha, Jaemin Kim, DongAhn Yoo, Kwondo Kim, Hak-Kyo Lee, Dajeong Lim, Seoae Cho, Olivier Hanotte, Okeyo Ally Mwai, Tadelle Dessie, Stephen J. Kemp, Sung Jong Oh, Heebal Kim
Software Mentions: 1
Published: over 7 years ago

10.1111/ejn.14492

Action in auctions: neural and computational mechanisms of bidding behaviour
Cited by: 3
Author(s): Mario Martinez‐Saito, Р. Н. Коновалов, М. А. Piradov, Анна Шестакова, Boris Gutkin, Vasily Klucharev
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00337-18

Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease
Cited by: 40
Author(s): Robert H. Mills, Yoshiki Vázquez-Baeza, Quanyin Zhu, Lingjing Jiang, James Gaffney, Greg Humphrey, Larry Smarr, Rob Knight, David J. Gonzalez
Software Mentions: 1
Published: over 5 years ago

10.1186/s13072-015-0011-y

Concordant and discordant DNA methylation signatures of aging in human blood and brain
Cited by: 127
Author(s): Pau Farré, Meaghan J. Jones, Michael J. Meaney, Eldon Emberly, Gustavo Turecki, Michæl S. Kobor
Software Mentions: 1
Published: over 9 years ago

10.3390/e23030284

Study of Wound Healing Dynamics by Single Pseudo-Particle Tracking in Phase Contrast Images Acquired in Time-Lapse
Cited by: 0
Author(s): Riccardo Scheda, Silvia Vitali, Enrico Giampieri, Gianni Pagnini, Isabella Zironi
Software Mentions: 1
Published: over 3 years ago

10.3390/diagnostics11061121

Cerebral CT Perfusion in Acute Stroke: The Effect of Lowering the Tube Load and Sampling Rate on the Reproducibility of Parametric Maps
Cited by: 4
Author(s): Georgios Ioannidis, Søren Christensen, Katerina Nikiforaki, Eleftherios Trivizakis, Kostas Perisinakis, Adam Hatzidakis, Apostolos H. Karantanas, Mauricio Reyes, Maarten G. Lansberg, Kostas Marias
Software Mentions: 1
Published: over 3 years ago

10.1016/j.dib.2017.07.035

Consensus datasets of mouse miRNA-mRNA interactions from multiple online resources
Cited by: 2
Author(s): Bi Zhao, Bin Xue
Software Mentions: 1
Published: about 7 years ago

10.1016/j.dib.2021.106985

Dataset of metaheuristics for the flow shop scheduling problem with maintenance activities integrated
Cited by: 0
Author(s): Antonella Branda, Davide Castellano, Guido Guizzi, Valentina Popolo
Software Mentions: 1
Published: over 3 years ago

10.1016/j.cub.2017.05.023

Paleogenomic Evidence for Multi-generational Mixing between Neolithic Farmers and Mesolithic Hunter-Gatherers in the Lower Danube Basin
Cited by: 98
Author(s): Gloria Gonzàlez-Fortes, Eppie R. Jones, Emma Lightfoot, Clive Bonsall, Cǎtǎlin Lazăr, Aurora Grandal-d’Anglade, María Dolores Garralda, Labib Drak, Veronika Siska, Angela Simalcsik, Adina Boroneanţ, Juan Ramón Vidal Romaní, Marcos Rodríguez, Pablo Arias, Ron Pinhasi, Andrea Manica, Michael Hofreiter
Software Mentions: 1
Published: over 7 years ago

10.1186/s13568-021-01291-9

Efficient 3-hydroxypropionic acid production by Acetobacter sp. CIP 58.66 through a feeding strategy based on pH control
Cited by: 1
Author(s): Florence de Fouchécour, Anaïs Lemarchand, Henry-Éric Spinnler, Claire Saulou‐Bérion
Software Mentions: 1
Published: about 3 years ago

10.1101/2021.07.06.21259051

Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: Results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C)
Cited by: 0
Author(s): J. A. C. Thomas, Randi E. Foraker, Noa Zamstein, Philip R. O. Payne, Adam B. Wilcox
Software Mentions: 1
Published: over 3 years ago

10.1016/j.cub.2020.06.098

Mechanochemical Crosstalk Produces Cell-Intrinsic Patterning of the Cortex to Orient the Mitotic Spindle
Cited by: 21
Author(s): Andrea Dimitracopoulos, Pragya Srivastava, Agathe Chaigne, Zaw Win, Roie Shlomovitz, Oscar M. Lancaster, Maël Le Berre, Matthieu Piel, Kristian Franze, Guillaume Salbreux, Buzz Baum
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-020-01385-3

Autonomous adaptive data acquisition for scanning hyperspectral imaging
Cited by: 5
Author(s): Elizabeth A. Holman, Yuan-Sheng Fang, Liang Chen, Michael R. DeWeese, Hoi-Ying N. Holman, Paul W. Sternberg
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-018-0259-4

Robustness and Information Transfer within IL-6-induced JAK/STAT Signalling
Cited by: 32
Author(s): Ulrike Billing, Tomasz Jetka, Lukas Nortmann, Nicole Wundrack, Michał Komorowski, Steffen Waldherr, Fred Schaper, Anna Dittrich
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.celrep.2021.109601

The non-muscle ADF/cofilin-1 controls sarcomeric actin filament integrity and force production in striated muscle laminopathies
Cited by: 9
Author(s): Nicolas Vignier, Maria Chatzifrangkeskou, Luca Pinton, Hugo Wioland, Thibaut Marais, Mégane Lemaître, Caroline Le Dour, Cécile Peccate, Déborah Cardoso, Alain Schmitt, Wei Wu, Maria Grazia Biferi, Naïra Naouar, Coline Macquart, Maud Beuvin, V. Decostre, Gisèle Bonne, Guillaume Romet-Lemonne, Howard J. Worman, Francesco Saverio Tedesco, Antoine Jégou, Antoine Muchir
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers11060793

Somatic Mutations in miRNA Genes in Lung Cancer—Potential Functional Consequences of Non-Coding Sequence Variants
Cited by: 34
Author(s): Paulina Galka-Marciniak, Martyna Olga Urbanek-Trzeciak, Paulina Maria Nawrocka, Agata Dutkiewicz, Maciej Giefing, Marzena Anna Lewandowska, Piotr Kozlowski
Software Mentions: 1
Published: over 5 years ago

10.1107/S2052252516006242

Quantum crystallographic charge density of urea
Cited by: 17
Author(s): Michael E. Wall
Software Mentions: 1
Published: over 8 years ago

10.3390/cancers13164130

Thermodynamic Genome-Scale Metabolic Modeling of Metallodrug Resistance in Colorectal Cancer
Cited by: 4
Author(s): Helena A. Herrmann, Mate Rusz, Dina Baier, Michael A. Jakupec, Bernhard K. Keppler, Walter Berger, Gunda Koellensperger, Jürgen Zanghellini
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0153295

Nonlinear Dynamics in Gene Regulation Promote Robustness and Evolvability of Gene Expression Levels
Cited by: 25
Author(s): Arno Steinacher, Declan G. Bates, Ozgur E. Akman, Orkun S. Soyer
Software Mentions: 1
Published: over 8 years ago

10.1029/2019JA026733

RBSP‐ECT Combined Spin‐Averaged Electron Flux Data Product
Cited by: 31
Author(s): A. J. Boyd, G. D. Reeves, Harlan E. Spence, H. O. Funsten, B. Larsen, R. M. Skoug, J. B. Blake, J. F. Fennell, S. G. Claudepierre, D. N. Baker, S. G. Kanekal, A. N. Jaynes
Software Mentions: 1
Published: about 5 years ago

10.1093/jhered/esu001

A Genomic Approach for Distinguishing between Recent and Ancient Admixture as Applied to Cattle
Cited by: 14
Author(s): Emily Jane McTavish, David M. Hillis
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0257399

Artificial Intelligence inspired methods for the allocation of common goods and services
Cited by: 1
Author(s): Spyridon Samothrakis
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0070899

Subgraph “Backbone” Analysis of Dynamic Brain Networks during Consciousness and Anesthesia
Cited by: 12
Author(s): Jeongkyu Shin, George A. Mashour, Seung-Woo Ku, Seunghwan Kim, UnCheol Lee
Software Mentions: 1
Published: over 11 years ago

10.3390/ijerph17010042

Ethylene Oxide Exposure Attribution and Emissions Quantification Based on Ambient Air Measurements near a Sterilization Facility
Cited by: 17
Author(s): Eduardo P. Olaguer, Amy Robinson, Susan Kilmer, Jim M. Haywood, Doreen Lehner
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0225166

Drugs modulating stochastic gene expression affect the erythroid differentiation process
Cited by: 25
Author(s): Anissa Guillemin, Ronan Duchesne, Fabien Crauste, Sandrine Gonin-Giraud, Olivier Gandrillon
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0168045

Quantum Decision Theory in Simple Risky Choices
Cited by: 23
Author(s): Maroussia Favre, Amrei Wittwer, Hans Rudolf Heinimann, V. I. Yukalov, Didier Sornette
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0048920

Modeling the Role of Negative Cooperativity in Metabolic Regulation and Homeostasis
Cited by: 16
Author(s): Eliot C. Bush, A.E. Clark, Christopher DeBoever, Lillian Haynes, Syeed Hussain, Xiaotu Ma, Matthew B. A. McDermott, Adam M. Novak, John S. Wentworth
Software Mentions: 1
Published: about 12 years ago

10.1186/s12898-019-0264-6

Impact of global warming scenarios on life-history traits of Tetranychus evansi (Acari: Tetranychidae)
Cited by: 7
Author(s): Noureldin Abuelfadl Ghazy, Tetsuo Gotoh, Takeshi Suzuki
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12859-020-03947-y

Predicting chemosensitivity using drug perturbed gene dynamics
Cited by: 1
Author(s): Joshua Mannheimer, Ashok Prasad, Daniel L. Gustafson
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0188927

Synaptic augmentation in a cortical circuit model reproduces serial dependence in visual working memory
Cited by: 21
Author(s): Daniel P. Bliss, Mark D’Esposito
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0043264

Influence of the Quantity and Quality of Light on Photosynthetic Periodicity in Coral Endosymbiotic Algae
Cited by: 30
Author(s): Michal Sorek, Oren Levy
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0212288

Excitable dynamics through toxin-induced mRNA cleavage in bacteria
Cited by: 2
Author(s): Stefan Vet, Alexandra Vandervelde, Lendert Gelens
Software Mentions: 1
Published: almost 6 years ago

10.1098/rsif.2020.0053

Thermodynamic modelling of synthetic communities predicts minimum free energy requirements for sulfate reduction and methanogenesis
Cited by: 19
Author(s): Hadrien Delattre, Jing Chen, Matthew J. Wade, Orkun S. Soyer
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0034636

Membranes with the Same Ion Channel Populations but Different Excitabilities
Cited by: 9
Author(s): Marco Arieli Herrera-Valdez
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0032749

Optimization of Time-Course Experiments for Kinetic Model Discrimination
Cited by: 15
Author(s): Nuno Lages, Carlos Cordeiro, Marta Sousa Silva, Ana Ponces Freire, António E. N. Ferreira
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0088072

Comprehensive Detection of Genes Causing a Phenotype Using Phenotype Sequencing and Pathway Analysis
Cited by: 4
Author(s): Marc Harper, Luisa S. Gronenberg, James C. Liao, Christopher Lee
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.58596

Retinotectal circuitry of larval zebrafish is adapted to detection and pursuit of prey
Cited by: 44
Author(s): Dominique Förster, Thomas O. Helmbrecht, Duncan S. Mearns, Linda Jordan, Nouwar Mokayes, Herwig Baier
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0225625

Semantic computational analysis of anticoagulation use in atrial fibrillation from real world data
Cited by: 23
Author(s): Daniel Bean, James Teo, Honghan Wu, Ricardo Oliveira, Raj Patel, Rebecca Bendayan, Ajay M. Shah, Richard Dobson, Paul A. Scott
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0200382

Assessing sustainability in North America’s ecosystems using criticality and information theory
Cited by: 15
Author(s): Elvia Ramírez-Carrillo, Oliver López-Corona, J. C. Toledo-Roy, Jon C. Lovett, Fernando de León-González, Luis Osorio‐Olvera, Julián Equihua, Everardo Robredo, A. Frank, Rodolfo Dirzo, Vanessa Pérez-Cirera
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0155728

Wavelength Discrimination in Drosophila Suggests a Role of Rhodopsin 1 in Color Vision
Cited by: 10
Author(s): Christian Garbers, Thomas Wachtler
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0197462

Bistability in a system of two species interacting through mutualism as well as competition: Chemostat vs. Lotka-Volterra equations
Cited by: 27
Author(s): Stefan Vet, Sophie de Buyl, Karoline Faust, Jan Danckaert, Didier Gonze, Lendert Gelens
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0222106

Action spectrum for photoperiodic control of thyroid-stimulating hormone in Japanese quail (Coturnix japonica)
Cited by: 9
Author(s): Yusuke Nakane, Ai Shinomiya, Wataru Ota, Keisuke Ikegami, Tsuyoshi Shimmura, Satoru Higashi, Yasuhiro Kamei, Takashi Yoshimura
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0254601

Characterizing the sectoral development of cities
Cited by: 3
Author(s): Diego Rybski, Prajal Pradhan, Shade T. Shutters, Van Butsic, Jürgen P. Kropp
Software Mentions: 1
Published: over 3 years ago

10.1186/s12859-017-1570-7

Prediction of virus-host protein-protein interactions mediated by short linear motifs
Cited by: 41
Author(s): Andrés Becerra, Víctor Bucheli, Pedro Moreno
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.51449

MeCP2 nuclear dynamics in live neurons results from low and high affinity chromatin interactions
Cited by: 26
Author(s): Francesco M. Piccolo, Zhe Liu, Peng Dong, Che-Hao Hsu, Elitsa I Stoyanova, Anjana Rao, Robert Tjian, Nathaniel Heintz
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0144045

Vesicle Motion during Sustained Exocytosis in Chromaffin Cells: Numerical Model Based on Amperometric Measurements
Cited by: 4
Author(s): Daungruthai Jarukanont, Imelda Bonifas Arredondo, R. Femat, Martín E. García
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pgen.1009314

Adaptation is influenced by the complexity of environmental change during evolution in a dynamic environment
Cited by: 26
Author(s): Sébastien Boyer, Lucas Hérissant, Gavin Sherlock
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pgen.1003125

A New Isolation with Migration Model along Complete Genomes Infers Very Different Divergence Processes among Closely Related Great Ape Species
Cited by: 104
Author(s): Thomas Mailund, Anders E. Halager, Michael Westergaard, Julien Dutheil, Kasper Munch, Lars Nørvang Andersen, Gerton Lunter, Kay Prüfer, Aylwyn Scally, Asger Hobolth, Mikkel H. Schierup
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pcbi.1002732

Linkers of Cell Polarity and Cell Cycle Regulation in the Fission Yeast Protein Interaction Network
Cited by: 16
Author(s): Federico Vaggi, James Dodgson, Archana Bajpai, Anatole Chessel, Ferenc Jordán, Masamitsu Sato, Rafael E. Carazo-Salas, Attila Csikász‐Nagy
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pcbi.1006949

GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity
Cited by: 15
Author(s): Lex E. Flagel, Benjamin K. Blackman, Lila Fishman, Patrick J. Monnahan, Andrea L. Sweigart, John K. Kelly
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1006460

In-silico dynamic analysis of cytotoxic drug administration to solid tumours: Effect of binding affinity and vessel permeability
Cited by: 18
Author(s): Vasileios Vavourakis, Triantafyllos Stylianopoulos, P. A. Wijeratne
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1005170

PreTIS: A Tool to Predict Non-canonical 5’ UTR Translational Initiation Sites in Human and Mouse
Cited by: 37
Author(s): Kerstin Reuter, Alexander Biehl, Koch Laurena, Volkhard Helms
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.49840

Principles of self-organization and load adaptation by the actin cytoskeleton during clathrin-mediated endocytosis
Cited by: 117
Author(s): Matthew Akamatsu, Ritvik Vasan, Daniel Serwas, Michael A Ferrin, Padmini Rangamani, David G. Drubin
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.66170

Highly localized intracellular Ca2+ signals promote optimal salivary gland fluid secretion
Cited by: 13
Author(s): Takahiro Takano, Amanda M. Wahl, Kai-Ting Huang, Takanori Narita, John Rugis, James Sneyd, David I. Yule
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1003428

The Correlation Structure of Local Neuronal Networks Intrinsically Results from Recurrent Dynamics
Cited by: 94
Author(s): Moritz Helias, Tom Tetzlaff, Markus Diesmann
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12859-016-0934-8

GEMINI: a computationally-efficient search engine for large gene expression datasets
Cited by: 14
Author(s): Timothy DeFreitas, Hachem Saddiki, Patrick Flaherty
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pcbi.1008459

A dual-feedback loop model of the mammalian circadian clock for multi-input control of circadian phase
Cited by: 16
Author(s): Lindsey S. Brown, Francis J. Doyle
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pcbi.1004097

Critical Slowing Down Governs the Transition to Neuron Spiking
Cited by: 55
Author(s): Christian Meisel, Andreas Klaus, Christian Kuehn, Dietmar Plenz
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pcbi.1008791

Excitatory-inhibitory tone shapes decision strategies in a hierarchical neural network model of multi-attribute choice
Cited by: 15
Author(s): Warren Woodrich Pettine, Kenway Louie, John D. Murray, Xiao Jing Wang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1007464

Between-tumor and within-tumor heterogeneity in invasive potential
Cited by: 9
Author(s): Veena Padmanaban, Yohannes Tsehay, Kevin Cheung, Andrew J. Ewald, Joel S. Bader
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pcbi.1006001

In silico analysis of antibiotic-induced Clostridium difficile infection: Remediation techniques and biological adaptations
Cited by: 10
Author(s): Eric Jones, Jean M. Carlson
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1007790

Firing rate homeostasis counteracts changes in stability of recurrent neural networks caused by synapse loss in Alzheimer’s disease
Cited by: 9
Author(s): Claudia Bachmann, Tom Tetzlaff, Renato Duarte, Abigail Morrison
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pcbi.1005534

Locking of correlated neural activity to ongoing oscillations
Cited by: 4
Author(s): Tobias Kühn, Moritz Helias
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.58523

Sniff-synchronized, gradient-guided olfactory search by freely moving mice
Cited by: 25
Author(s): Teresa M Findley, David G Wyrick, Jennifer L Cramer, M. C. Brown, Blake Holcomb, Robin Attey, Dorian Yeh, Eric Monasevitch, Nelly Nouboussi, Isabelle Cullen, Jeremea O Songco, Jared F King, Yashar Ahmadian, Matthew C. Smear
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1004146

Asymmetric Genome Organization in an RNA Virus Revealed via Graph-Theoretical Analysis of Tomographic Data
Cited by: 12
Author(s): James A. Geraets, Eric C. Dykeman, Peter G. Stockley, Neil A. Ranson, Reidun Twarock
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pcbi.1002612

Rational Engineering of Enzyme Allosteric Regulation through Sequence Evolution Analysis
Cited by: 70
Author(s): Jae-Seong Yang, Sang Woo Seo, Se Bok Jang, Gyoo Yeol Jung, Sanguk Kim
Software Mentions: 1
Published: over 12 years ago

Projects: pypi: scipy

Papers Mentioning scipy 1,071