bioconductor projects 1,374
bioconductor: scTHI
Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing dataPapers that mentioned: 1
Very Likely Science (100)
bioconductor: LymphoSeq
Analyze high-throughput sequencing of T and B cell receptorsPapers that mentioned: 1
Very Likely Science (75)
bioconductor: RpsiXML
Papers that mentioned: 1
Unlikely Science (0)
Very Likely Science (100)
Very Likely Science (100)
bioconductor: RefPlus
A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.Papers that mentioned: 1
Very Likely Science (90)
bioconductor: LPEadj
A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.Papers that mentioned: 1
Very Likely Science (100)
bioconductor: DelayedMatrixStats
Functions that Apply to Rows and Columns of 'DelayedMatrix' ObjectsPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (85)
bioconductor: ChromSCape
Analysis of single-cell epigenomics datasets with a Shiny AppPapers that mentioned: 1
Very Likely Science (100)
bioconductor: MSstatsQC
Longitudinal system suitability monitoring and quality control for proteomic experimentsPapers that mentioned: 1
Very Likely Science (100)
bioconductor: recoup
An R package for the creation of complex genomic profile plotsPapers that mentioned: 1
Very Likely Science (100)
bioconductor: RGalaxy
Papers that mentioned: 1
Unlikely Science (0)
Very Likely Science (92)
bioconductor: scTensor
Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decompositionPapers that mentioned: 1
Very Likely Science (90)
Very Likely Science (90)
Very Likely Science (100)
bioconductor: scruff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)Papers that mentioned: 1
Very Likely Science (100)
Very Likely Science (95)
bioconductor: KinSwingR
KinSwingR: network-based kinase activity predictionPapers that mentioned: 1
Very Likely Science (100)
bioconductor: Rcade
Papers that mentioned: 1
Unlikely Science (0)
bioconductor: scmeth
Functions to conduct quality control analysis in methylation dataPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (98)
bioconductor: receptLoss
Unsupervised Identification of Genes with Expression Loss in Subsets of TumorsPapers that mentioned: 1
Very Likely Science (100)
bioconductor: iterativeBMAsurv
The Iterative Bayesian Model Averaging (BMA) Algorithm For Survival AnalysisPapers that mentioned: 1
Very Likely Science (100)
bioconductor: rama
Papers that mentioned: 1
Unlikely Science (0)
bioconductor: predictionet
Papers that mentioned: 1
Unlikely Science (0)
bioconductor: ppiStats
Papers that mentioned: 1
Unlikely Science (0)
bioconductor: ARRmNormalization
Adaptive Robust Regression normalization for Illumina methylation dataPapers that mentioned: 1
Very Likely Science (100)
bioconductor: pcxn
Exploring, analyzing and visualizing functions utilizing the pcxnData packagePapers that mentioned: 1
Very Likely Science (98)
bioconductor: segmenter
Perform Chromatin Segmentation Analysis in R by Calling ChromHMMPapers that mentioned: 1
Very Likely Science (90)
bioconductor: dks
The double Kolmogorov-Smirnov package for evaluating multiple testing procedures.Papers that mentioned: 1
Very Likely Science (83)
Very Likely Science (90)
bioconductor: PoTRA
Papers that mentioned: 1
Unlikely Science (0)
bioconductor: perturbatr
Papers that mentioned: 1
Unlikely Science (0)
bioconductor: easyreporting
Helps creating report for improving Reproducible Computational ResearchPapers that mentioned: 1
Very Likely Science (89)
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (75)
bioconductor: psichomics
Graphical Interface for Alternative Splicing Quantification, Analysis and VisualisationPapers that mentioned: 1
Very Likely Science (100)
bioconductor: EmpiricalBrownsMethod
Uses Brown's method to combine p-values from dependent testsPapers that mentioned: 1
Very Likely Science (100)
bioconductor: prebs
Probe region expression estimation for RNA-seq data for improved microarray comparabilityPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (90)
bioconductor: QuaternaryProd
Computes the Quaternary Dot Product Scoring Statistic for Signed and Unsigned Causal GraphsPapers that mentioned: 1
Very Likely Science (98)
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (98)
bioconductor: covEB
Empirical Bayes estimate of block diagonal covariance matricesPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (75)
Very Likely Science (90)
bioconductor: cellscape
Explores single cell copy number profiles in the context of a single cell treePapers that mentioned: 1
Very Likely Science (90)
bioconductor: cTRAP
Identification of candidate causal perturbations from differential gene expression dataPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (100)
bioconductor: HiCBricks
Framework for Storing and Accessing Hi-C Data Through HDF FilesPapers that mentioned: 1
Very Likely Science (65)
bioconductor: RaggedExperiment
Representation of Sparse Experiments and Assays Across SamplesPapers that mentioned: 1
Very Likely Science (100)
bioconductor: cytomapper
Visualization of highly multiplexed imaging data in RPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (75)
bioconductor: graper
Adaptive penalization in high-dimensional regression and classification with external covariates using variational BayesPapers that mentioned: 1
Very Likely Science (100)
bioconductor: DAMEfinder
Finds DAMEs - Differential Allelicly MEthylated regionsPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
bioconductor: signatureSearch
Environment for Gene Expression Searching Combined with Functional Enrichment AnalysisPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (89)
Very Likely Science (100)
bioconductor: girafe
Genome Intervals and Read Alignments for Functional ExplorationPapers that mentioned: 1
Very Likely Science (90)
Very Likely Science (65)
Very Likely Science (98)
bioconductor: similaRpeak
Metrics to estimate a level of similarity between two ChIP-Seq profilesPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
bioconductor: sagenhaft
Collection of functions for reading and comparing SAGE librariesPapers that mentioned: 1
Very Likely Science (83)
Very Likely Science (90)
Very Likely Science (100)
bioconductor: GenomicDistributions
GenomicDistributions: fast analysis of genomic intervals with BioconductorPapers that mentioned: 1
Very Likely Science (100)
bioconductor: genphen
Papers that mentioned: 1
Unlikely Science (0)