bioconductor projects 1,374
Very Likely Science (100)
bioconductor: multiHiCcompare
Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are availablePapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
bioconductor: nnNorm
Spatial and intensity based normalization of cDNA microarray data based on robust neural netsPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
bioconductor: CytoTree
Papers that mentioned: 1
Unlikely Science (0)
Very Likely Science (100)
Very Likely Science (90)
bioconductor: ILoReg
ILoReg: a tool for high-resolution cell population identification from scRNA-Seq dataPapers that mentioned: 1
Very Likely Science (100)
bioconductor: miQC
Flexible, probabilistic metrics for quality control of scRNA-seq dataPapers that mentioned: 1
Very Likely Science (100)
bioconductor: glmSparseNet
Network Centrality Metrics for Elastic-Net Regularized ModelsPapers that mentioned: 1
Very Likely Science (100)
bioconductor: GmicR
Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC)Papers that mentioned: 1
Very Likely Science (100)
Very Likely Science (90)
bioconductor: seqPattern
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequencesPapers that mentioned: 1
Very Likely Science (90)
Very Likely Science (90)
bioconductor: MethCP
Differential methylation anlsysis for bisulfite sequencing dataPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
bioconductor: ldblock
data structures for linkage disequilibrium measures in populationsPapers that mentioned: 1
Very Likely Science (83)
Very Likely Science (83)
bioconductor: KnowSeq
KnowSeq R/Bioc package: The Smart Transcriptomic PipelinePapers that mentioned: 1
Very Likely Science (90)
bioconductor: mogsa
Multiple omics data integrative clustering and gene set analysisPapers that mentioned: 1
Very Likely Science (100)
bioconductor: transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and QuantificationPapers that mentioned: 1
Very Likely Science (90)
Very Likely Science (100)
bioconductor: proDA
Differential Abundance Analysis of Label-Free Mass Spectrometry DataPapers that mentioned: 1
Very Likely Science (100)
bioconductor: tRanslatome
Comparison between multiple levels of gene expressionPapers that mentioned: 1
Very Likely Science (75)
bioconductor: alsace
Papers that mentioned: 1
Unlikely Science (0)
Very Likely Science (90)
bioconductor: gwasurvivr
gwasurvivr: an R package for genome wide survival analysisPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (100)
bioconductor: powerTCR
Model-Based Comparative Analysis of the TCR RepertoirePapers that mentioned: 1
Very Likely Science (100)
bioconductor: plethy
R framework for exploration and analysis of respirometry dataPapers that mentioned: 1
Very Likely Science (93)
Very Likely Science (75)
Very Likely Science (100)
bioconductor: MACPET
Papers that mentioned: 1
Unlikely Science (0)
bioconductor: TreeSummarizedExperiment
TreeSummarizedExperiment: a S4 Class for Data with Tree StructuresPapers that mentioned: 1
Very Likely Science (85)
bioconductor: traseR
GWAS trait-associated SNP enrichment analyses in genomic intervalsPapers that mentioned: 1
Very Likely Science (100)
bioconductor: interactiveDisplay
Package for enabling powerful shiny web displays of Bioconductor objectsPapers that mentioned: 1
Very Likely Science (90)
bioconductor: sevenC
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifsPapers that mentioned: 1
Very Likely Science (93)
Very Likely Science (90)
bioconductor: MouseFM
In-silico methods for genetic finemapping in inbred micePapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (83)
bioconductor: HDTD
Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)Papers that mentioned: 1
Very Likely Science (100)
bioconductor: HPAanalyze
Retrieve and analyze data from the Human Protein AtlasPapers that mentioned: 1
Very Likely Science (100)
bioconductor: xmapbridge
Export plotting files to the xmapBridge for visualisation in X:MapPapers that mentioned: 1
Very Likely Science (100)
bioconductor: AnnotationFilter
Facilities for Filtering Bioconductor Annotation ResourcesPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (90)
bioconductor: PoDCall
Positive Droplet Calling for DNA Methylation Droplet Digital PCRPapers that mentioned: 1
Very Likely Science (95)
bioconductor: DEFormats
Differential gene expression data formats converterPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (90)
bioconductor: BiocStyle
Standard styles for vignettes and other Bioconductor documentsPapers that mentioned: 1
Very Likely Science (100)
bioconductor: MWASTools
MWASTools: an integrated pipeline to perform metabolome-wide association studiesPapers that mentioned: 1
Very Likely Science (98)
Very Likely Science (100)
bioconductor: ImmuneSpaceR
A Thin Wrapper around the ImmuneSpace Data and Tools PortalPapers that mentioned: 1
Very Likely Science (100)
bioconductor: Cepo
Cepo for the identification of differentially stable genesPapers that mentioned: 1
Very Likely Science (100)
bioconductor: BiocVersion
Set the appropriate version of Bioconductor packagesPapers that mentioned: 1
Very Likely Science (75)
bioconductor: MSnID
Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics IdentificationsPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
bioconductor: bioassayR
Cross-target analysis of small molecule bioactivityPapers that mentioned: 1
Very Likely Science (100)
bioconductor: MSGFplus
Papers that mentioned: 1
Unlikely Science (0)
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (98)
bioconductor: biovizBase
Basic graphic utilities for visualization of genomic data.Papers that mentioned: 1
Very Likely Science (100)
Very Likely Science (85)
bioconductor: bnbc
Bandwise normalization and batch correction of Hi-C dataPapers that mentioned: 1
Very Likely Science (100)
bioconductor: miRcomp
Tools to assess and compare miRNA expression estimatation methodsPapers that mentioned: 1
Very Likely Science (85)
bioconductor: KBoost
Inference of gene regulatory networks from gene expression dataPapers that mentioned: 1
Very Likely Science (100)
bioconductor: SNAGEE
Signal-to-Noise applied to Gene Expression ExperimentsPapers that mentioned: 1
Very Likely Science (100)
bioconductor: BufferedMatrix
A matrix data storage object held in temporary filesPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (90)
Very Likely Science (100)
bioconductor: sincell
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq dataPapers that mentioned: 1
Very Likely Science (100)
bioconductor: npGSEA
Permutation approximation methods for gene set enrichment analysis (non-permutation GSEA)Papers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
bioconductor: methimpute
Imputation-guided re-construction of complete methylomes from WGBS dataPapers that mentioned: 1
Very Likely Science (90)
bioconductor: BBCAnalyzer
BBCAnalyzer: an R/Bioconductor package for visualizing base countsPapers that mentioned: 1
Very Likely Science (90)
bioconductor: metavizr
R Interface to the metaviz web app for interactive metagenomics data analysis and visualizationPapers that mentioned: 1
Very Likely Science (100)
bioconductor: LineagePulse
Differential expression analysis and model fitting for single-cell RNA-seq dataPapers that mentioned: 1
Very Likely Science (100)
bioconductor: metaseqR2
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithmsPapers that mentioned: 1
Very Likely Science (70)
Very Likely Science (100)
bioconductor: MethTargetedNGS
Perform Methylation Analysis on Next Generation Sequencing DataPapers that mentioned: 1
Very Likely Science (100)
bioconductor: BaalChIP
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomesPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
bioconductor: attract
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor LandscapePapers that mentioned: 1
Very Likely Science (100)
bioconductor: SAIGEgds
Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association StudiesPapers that mentioned: 1
Very Likely Science (100)
bioconductor: omicplotR
Visual Exploration of Omic Datasets Using a Shiny AppPapers that mentioned: 1
Very Likely Science (90)
bioconductor: OMICsPCA
An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samplesPapers that mentioned: 1
Very Likely Science (100)
bioconductor: MCbiclust
Massive correlating biclusters for gene expression data and associated methodsPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (94)
bioconductor: oneSENSE
One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)Papers that mentioned: 1
Very Likely Science (85)
bioconductor: lionessR
Modeling networks for individual samples using LIONESSPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (98)
bioconductor: maPredictDSC
Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature ChallengePapers that mentioned: 1
Very Likely Science (100)
bioconductor: clonotypeR
Papers that mentioned: 1
Unlikely Science (0)
Very Likely Science (100)
Very Likely Science (90)