bioconductor: tximport | Projects

10.3389/fmicb.2019.01790

Associated Bacteria Affect Sexual Reproduction by Altering Gene Expression and Metabolic Processes in a Biofilm Inhabiting Diatom
Cited by: 18
Author(s): Emilio Cirri, Sam De Decker, Gust Bilcke, Markus Werner, Cristina Maria Osuna-Cruz, Lieven De Veylder, Klaas Vandepoele, Oliver Werz, Wim Vyverman, Georg Pohnert
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-78904-z

A functional genomics approach to dissect spotted alfalfa aphid resistance in Medicago truncatula
Cited by: 3
Author(s): Silke Jacques, Jana Sperschneider, Gagan Garg, Louise F. Thatcher, Ling Gao, Lars G. Kamphuis, Karam B. Singh
Software Mentions: 2
Published: almost 4 years ago

10.3389/fimmu.2020.581111

A Population of Radio-Resistant Macrophages in the Deep Myenteric Plexus Contributes to Postoperative Ileus Via Toll-Like Receptor 3 Signaling
Cited by: 6
Author(s): Jana Enderes, Shilpashree Mallesh, Reiner Schneider, Kristof Johannes Hupa, Mariola Lysson, Bianca Schneiker, Kristian Händler, Balthasar Clemens Schlotmann, Patrick Günther, Joachim L. Schultze, Jörg C. Kalff, Sven Wehner
Software Mentions: 2
Published: almost 4 years ago

10.3389/fimmu.2021.671073

Cholesterol-Induced M4-Like Macrophages Recruit Neutrophils and Induce NETosis
Cited by: 10
Author(s): Ana C. Maretti-Mira, Lucy Golden–Mason, Matthew P. Salomon, Mariana J. Kaplan, Hugo R. Rosen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-82051-4

Signalling pathways and mechanistic cues highlighted by transcriptomic analysis of primordial, primary, and secondary ovarian follicles in domestic cat
Cited by: 6
Author(s): Shauna Kehoe, Katarina Jewgenow, Paul R. Johnston, Susan Mbedi, Beate C. Braun
Software Mentions: 2
Published: almost 4 years ago

10.3389/fimmu.2021.679184

RUVBL1/2 Complex Regulates Pro-Inflammatory Responses in Macrophages via Regulating Histone H3K4 Trimethylation
Cited by: 5
Author(s): Rui Zhang, Chris Cheung, Sang Uk Seo, Hang Liu, Lakhansing Pardeshi, Koon Ho Wong, Larry M. C. Chow, Mary P. Chau, Yixiang Wang, Ah Ra Lee, Woon Yong Kwon, Sheng Chen, Bill Kwan wai Chan, Kenneth Wong, Richard Choy, Ben C.B. Ko
Software Mentions: 2
Published: over 3 years ago

10.3390/antiox10010048

Cigarette Smoke Extract Activates Hypoxia-Inducible Factors in a Reactive Oxygen Species-Dependent Manner in Stroma Cells from Human Endometrium
Cited by: 11
Author(s): Naoko Kida, Yoshiyuki Matsuo, Yoshiko Hashimoto, Kenichiro Nishi, Tomoko Tsuzuki‐Nakao, Hidemasa Bono, Tetsuo Maruyama, Kiichi Hirota, Hidetaka Okada
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-021-07903-9

The transcriptomic blueprint of molt in rooster using various tissues from Ginkkoridak (Korean long-tailed chicken)
Cited by: 1
Author(s): Clémentine Charton, Dong-Jae Youm, Byung June Ko, Donghyeok Seol, Bongsang Kim, Han-Ha Chai, Dajeong Lim, Heebal Kim
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-020-6602-4

Hepatic transcriptome of the freeze-tolerant Cope’s gray treefrog, Dryophytes chrysoscelis: responses to cold acclimation and freezing
Cited by: 18
Author(s): M. Clara F. do Amaral, James Frisbie, Raphael J. Crum, David L. Goldstein, Carissa M. Krane
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-92979-2

Increased colonic expression of ACE2 associates with poor prognosis in Crohn’s disease
Cited by: 12
Author(s): Takahiko Toyonaga, Kenza C. Araba, Meaghan M. Kennedy, Benjamin Keith, Elisabeth A. Wolber, Caroline Beasley, Erin C. Steinbach, Matthew Schaner, Animesh Jain, Millie D. Long, Edward L. Barnes, Hans Herfarth, Kim L. Isaacs, Jonathan J. Hansen, Muneera R. Kapadia, José G. Guillem, Ajay Gulati, Praveen Sethupathy, Terrence S. Furey, Camille Ehré, Shehzad Z. Sheikh
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-93467-3

Transcriptomic analysis links hepatocellular carcinoma (HCC) in HZE ion irradiated mice to a human HCC subtype with favorable outcomes
Cited by: 3
Author(s): Liang Ding, Yongjia Yu, Elijah F. Edmondson, Michael M. Weil, Laurentiu M. Pop, Molly McCarthy, Robert L. Ullrich, Michael D. Story
Software Mentions: 2
Published: over 3 years ago

10.1080/19768354.2019.1595142

Transcriptome analyses suggest minimal effects of Shank3 dosage on directional gene expression changes in the mouse striatum
Cited by: 11
Author(s): Yeunkum Lee, Hyojin Kang, Can Jin, Yinhua Zhang, Yoonhee Kim, Ki-Hoon Han
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2019.01352

Identification of Novel Genes and Biological Pathways That Overlap in Infectious and Nonallergic Diseases of the Upper and Lower Airways Using Network Analyses
Cited by: 8
Author(s): Erin E. Baschal, Eric Stanley Larson, Tori C. Bootpetch Roberts, Shivani Pathak, Gretchen Frank, Elyse Handley, Jordyn Dinwiddie, Molly Moloney, Patricia J. Yoon, Samuel P. Gubbels, Melissa A. Scholes, Stephen P. Cass, Herman A. Jenkins, Daniel N. Frank, Ivana V. Yang, David A. Schwartz, Vijay R. Ramakrishnan, Regie Lyn P. Santos‐Cortez
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2020.550894

Identification of a Transcriptomic Prognostic Signature by Machine Learning Using a Combination of Small Cohorts of Prostate Cancer
Cited by: 8
Author(s): Benjamin Vittrant, Mickaël Leclercq, Marie‐Laure Martin‐Magniette, Colin C. Collins, Alain Bergeron, Yves Fradet, Arnaud Droit
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13072-017-0167-8

Co-regulation of transcription by BRG1 and BRM, two mutually exclusive SWI/SNF ATPase subunits
Cited by: 36
Author(s): Jesse R. Raab, John S. Runge, Camarie C. Spear, Terry Magnuson
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-021-97295-3

The time course of molecular acclimation to seawater in a euryhaline fish
Cited by: 7
Author(s): Lucrezia C. Bonzi, Alison Monroe, Robert Lehmann, Michael L. Berumen, Timothy Ravasi, Celia Schunter
Software Mentions: 2
Published: about 3 years ago

10.1016/j.ebiom.2018.12.003

HDAC inhibitor valproic acid protects heart function through Foxm1 pathway after acute myocardial infarction
Cited by: 45
Author(s): Shuo Tian, Ienglam Lei, Wenbin Gao, Liu Liu, Yijing Guo, Jeffery Creech, Todd J. Herron, Shaoxiang Xian, X. Peter, Y. Eugene Chen, Yongqing Li, Hasan B. Alam, Zhong Wang
Software Mentions: 2
Published: almost 6 years ago

10.7150/thno.47983

Immunomodulation of intracranial melanoma in response to blood-tumor barrier opening with focused ultrasound
Cited by: 21
Author(s): Colleen T. Curley, Aaron D. Stevens, Alexander S. Mathew, Katarzyna Stasiak, William J. Garrison, G. Wilson Miller, Natasha D. Sheybani, Víctor H. Engelhard, Timothy N. J. Bullock, Richard J. Price
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-021-07891-w

Comparative transcriptome profiling of heat stress response of the mangrove crab Scylla serrata across sites of varying climate profiles
Cited by: 1
Author(s): Anish Man Singh Shrestha, Crissa Ann I. Lilagan, Joyce Emlyn B Guiao, Maria Rowena R. Romana-Eguia, Ma. Carmen Ablan-Lagman
Software Mentions: 2
Published: over 3 years ago

10.1016/j.ebiom.2020.103030

CUP-AI-Dx: A tool for inferring cancer tissue of origin and molecular subtype using RNA gene-expression data and artificial intelligence
Cited by: 54
Author(s): Yue Zhao, Zikang Pan, Sandeep Namburi, Andrew Pattison, Atara Posner, Shiva Balachander, Carolyn Paisie, Honey V. Reddi, Jens Rueter, Anthony J. Gill, Stephen B. Fox, Kanwal Raghav, William F. Flynn, Richard W. Tothill, Sheng Li, R. Krishna Murthy Karuturi, Joshy George
Software Mentions: 2
Published: about 4 years ago

10.1038/s42003-021-02073-6

Mitofusin-2 boosts innate immunity through the maintenance of aerobic glycolysis and activation of xenophagy in mice
Cited by: 15
Author(s): Prashanta Silwal, Jin‐Kyung Kim, Soyeon Jeon, June-Young Lee, Young Jae Kim, Yi Sak Kim, Yeji Seo, Jihye Kim, Soo Yeon Kim, Min Joung Lee, Jun Young Heo, Myeong Ho Jung, Hyun Sik Kim, Dong-Wook Hyun, Jeong Eun Han, Jake Whang, Yang Hoon Huh, Sang‐Hee Lee, Won Do Heo, Jin Man Kim, Jin-Woo Bae, Eun‐Kyeong Jo
Software Mentions: 2
Published: over 3 years ago

10.1128/mBio.01682-21

Aspergillus fumigatus Acetate Utilization Impacts Virulence Traits and Pathogenicity
Cited by: 6
Author(s): Laure Nicolas Annick Ries, Patrícia Alves de Castro, Lilian Pereira Silva, Clara Valero, Thaila Fernanda dos Reis, Raquel Saborano, Iola F. Duarte, Gabriela Félix Persinoti, Jacob L. Steenwyk, Antonis Rokas, Fausto Almeida, Jonas Henrique Costa, Taícia Pacheco Fill, Sarah Sze Wah Wong, Vishukumar Aimanianda, Fernando Rodrigues, Relber Aguiar Gonçales, Cláudio Duarte-Oliveira, Agostinho Carvalho, Gustavo Henrique Goldman
Software Mentions: 2
Published: about 3 years ago

10.3390/ijms22157813

Bmi1 Augments Proliferation and Survival of Cortical Bone-Derived Stem Cells after Injury through Novel Epigenetic Signaling via Histone 3 Regulation
Cited by: 1
Author(s): Lindsay Kraus, Chris Bryan, Marcus Wagner, Tabito Kino, M. M. Gunchenko, Wassy Jalal, Mohsin Khan, Sadia Mohsin
Software Mentions: 2
Published: over 3 years ago

10.1128/mSphere.00538-20

Transcriptional Profiling Suggests T Cells Cluster around Neurons Injected with Toxoplasma gondii Proteins
Cited by: 8
Author(s): Emily F. Merritt, Hannah J. Johnson, Zhee Sheen Wong, Adam Buntzman, Austin C. Conklin, Carla M. Cabral, Casey E. Romanoski, Jon P. Boyle, Anita A. Koshy
Software Mentions: 2
Published: about 4 years ago

10.1002/cti2.1082

Immunological observations and transcriptomic analysis of trimester‐specific full‐term placentas from three Zika virus‐infected women
Cited by: 19
Author(s): Fok‐Moon Lum, Vipin Narang, Susan Swee-Shan Hue, Jie Chen, Naomi McGovern, Ravisankar Rajarethinam, Jeslin J. L. Tan, Siti Naqiah Amrun, Yi‐Hao Chan, Cheryl Yi‐Pin Lee, Tze-Kwang Chua, Wearn‐Xin Yee, Nicholas Kim‐Wah Yeo, T. Y. T. Tan, Xuan Liu, Sam Haldenby, Yee‐Sin Leo, Florent Ginhoux, Jerry Ky Chan, Julian A. Hiscox, Chia-Yin Chong, Lisa F. P. Ng
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22158160

Gene Expression Profile of Human Mesenchymal Stromal Cells Exposed to Hypoxic and Pseudohypoxic Preconditioning—An Analysis by RNA Sequencing
Cited by: 3
Author(s): Katarzyna Zielniok, Anna Burdzińska, Victor Murcia Pienkowski, Agnieszka Koppolu, Małgorzata Rydzanicz, Radosław Zagożdżon, Leszek Pączek
Software Mentions: 2
Published: over 3 years ago

10.3390/cells9051109

The Histone Variant MacroH2A1 Regulates Key Genes for Myogenic Cell Fusion in a Splice-Isoform Dependent Manner
Cited by: 9
Author(s): Sarah Hurtado-Bagès, Melanija Posavec Marjanović, Vanesa Valero, Roberto Malinverni, David Corujo, Philippe Bouvet, Anne-Claire Lavigne, Kerstin Bystricky, Marcus Buschbeck
Software Mentions: 2
Published: over 4 years ago

10.1038/s41419-019-1743-6

Dephosphorylation of HDAC4 by PP2A-Bδ unravels a new role for the HDAC4/MEF2 axis in myoblast fusion
Cited by: 8
Author(s): Alexandra Veloso, Maud Martin, Jonathan Bruyr, Tina O’Grady, Christophe Deroanne, Denis Mottet, Jean-Claude Twizere, Thomas Cherrier, Samuel Dequiedt
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22179222

Xyloglucan Remodeling Defines Auxin-Dependent Differential Tissue Expansion in Plants
Cited by: 6
Author(s): Silvia M. Velasquez, Xiaoyuan Guo, Marçal Gallemí, Bibek Aryal, Peter Venhuizen, Elke Barbez, Kai Dünser, Martin Darino, Aleš Pěnčík, Ondřej Novák, Maria Kalyna, Grégory Mouille, Eva Benková, Rishikesh P. Bhalerao, Jozef Mravec, Jürgen Kleine‐Vehn
Software Mentions: 2
Published: about 3 years ago

10.1007/s10565-020-09516-6

Estrogen receptor alpha (ERα)–mediated coregulator binding and gene expression discriminates the toxic ERα agonist diethylstilbestrol (DES) from the endogenous ERα agonist 17β-estradiol (E2)
Cited by: 10
Author(s): Aziza Hussein Bakheit Adam, L.H.J. de Haan, Ignacio Miro Estruch, Guido Hooiveld, Jochem Louisse, Ivonne M.C.M. Rietjens
Software Mentions: 2
Published: almost 5 years ago

10.3390/cancers12030752

Upregulation of Protein Synthesis and Proteasome Degradation Confers Sensitivity to Proteasome Inhibitor Bortezomib in Myc-Atypical Teratoid/Rhabdoid Tumors
Cited by: 5
Author(s): Huy Tran, Kuo Sheng Wu, Shian Ying Sung, Chun A. Changou, Tsung Han Hsieh, Yun Ru Liu, Yen‐Lin Liu, Meng‐Li Tsai, Hsin Lun Lee, Kevin Hsieh, Wen Chang Huang, Muh Lii Liang, Hsin Hung Chen, Yi Yen Lee, Shih Chieh Lin, Donald Ming Tak Ho, Feng Chi Chang, Meng En Chao, Wan Chen, Shing Shung Chu, Alice L. Yu, Yun Yen, Che-Chang Chang, Tai-Tong Wong
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0235725

Differential gene expression analysis and cytological evidence reveal a sexual stage of an amoeba with multiparental cellular and nuclear fusion
Cited by: 3
Author(s): Yonas I. Tekle, Fang Wang, Alireza Heidari, Alanna Johnson Stewart
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.33962

Drosophila Fezf coordinates laminar-specific connectivity through cell-intrinsic and cell-extrinsic mechanisms
Cited by: 28
Author(s): Jing Peng, Ivan J. Santiago, Curie Ahn, Burak Gür, C. Kimberly Tsui, Zhixiao Su, Chengpei Xu, Aziz Karakhanyan, Marion Silies, Matthew Y. Pecot
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0248691

Moringa isothiocyanate-1 regulates Nrf2 and NF-κB pathway in response to LPS-driven sepsis and inflammation
Cited by: 17
Author(s): Badi Sri Sailaja, Rohit Aita, Shane Maledatu, David M. Ribnicky, Michael P. Verzi, Ilya Raskin
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0243093

Methylation of the PTENP1 pseudogene as potential epigenetic marker of age-related changes in human endometrium
Cited by: 9
Author(s): Т. Ф. Коваленко, K. V. Morozova, Marat S. Pavlyukov, Ksenia S. Anufrieva, M. Yu. Bobrov, Alina M. Gamisoniya, Lyudmila A. Ozolinya, Dobrokhotova Yu.E. Dobrokhotova, M. I. Shakhparonov, Lev I. Patrushev
Software Mentions: 2
Published: almost 4 years ago

10.1186/s40478-021-01205-7

Altered lipid metabolism marks glioblastoma stem and non-stem cells in separate tumor niches
Cited by: 48
Author(s): Sajina Shakya, Anthony D. Gromovsky, James S. Hale, Arnon Møldrup Knudsen, Briana C. Prager, Lisa C. Wallace, Luiz O. F. Penalva, Heather A. Brown, Bjarne Winther Kristensen, Jeremy Rich, Justin D. Lathia, J. Mark Brown, Christopher G. Hubert
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pgen.1008544

The derived allele of a novel intergenic variant at chromosome 11 associates with lower body mass index and a favorable metabolic phenotype in Greenlanders
Cited by: 4
Author(s): Mette K. Andersen, Emil Jørsboe, Line Skotte, Kristian Hanghøj, Camilla H. Sandholt, Ida Moltke, Niels Grarup, Timo Kern, Yuvaraj Mahendran, Bolette Søborg, Peter Bjerregaard, Christina Viskum Lytken Larsen, Inger Katrine Dahl-Petersen, Hemant K. Tiwari, Bjarke Feenstra, Anders Koch, Howard W. Wiener, Scarlett E. Hopkins, Oluf Pedersen, Mads Melbye, Bert B. Boyer, Marit Eika Jørgensen, Anders Albrechtsen, Torben Hansen
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pgen.1008369

Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes
Cited by: 18
Author(s): Rahulsimham Vegesna, Marta Tomaszkiewicz, Paul Medvedev, Kateryna D. Makova
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pcbi.1009132

eVIP2: Expression-based variant impact phenotyping to predict the function of gene variants
Cited by: 7
Author(s): Alexis M. Thornton, Lishan Fang, April Lo, Maria McSharry, David Haan, Casey OʼBrien, Alice H. Berger, Marios Giannakis, Angela N. Brooks
Software Mentions: 2
Published: over 3 years ago

10.3390/plants9091059

Gaining Insight into Exclusive and Common Transcriptomic Features Linked to Drought and Salinity Responses across Fruit Tree Crops
Cited by: 7
Author(s): Jubina Benny, Annalisa Marchese, Antonio Giovino, Francesco Paolo Marra, Anna Perrone, Tiziano Caruso, Federico Martinelli
Software Mentions: 2
Published: over 4 years ago

10.1098/rstb.2019.0728

Comparative transcriptomic analysis of the mechanisms underpinning ageing and fecundity in social insects
Cited by: 38
Author(s): Judith Korb, Karen Meusemann, Denise Aumer, Abel Bernadou, D. Elsner, Barbara Feldmeyer, Susanne Foitzik, Jürgen Heınze, Romain Libbrecht, Silu Lin, Megha Majoe, José Manuel Monroy Kuhn, Volker Nehring, Matteo Negroni, Robert J. Paxton, Alice Séguret, Marah Stoldt, Thomas Flatt
Software Mentions: 2
Published: over 3 years ago

10.1177/1744806921999013

Modulation of microglial activation states by spinal cord stimulation in an animal model of neuropathic pain: Comparing high rate, low rate, and differential target multiplexed programming
Cited by: 24
Author(s): William J. Smith, David L. Cedeño, Samuel M. Thomas, Courtney A. Kelley, Francesco Vetri, Ricardo Vallejo
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13024-019-0319-3

TREM2 brain transcript-specific studies in AD and TREM2 mutation carriers
Cited by: 56
Author(s): Jorge L. Del‐Aguila, Bruno A. Benitez, Zeran Li, Umber Dube, Kathie A. Mihindukulasuriya, John Budde, Fabiana H.G. Farias, María Victoria Fernández, Laura Ibáñez, Shan Jiang, Richard J. Perrin, Nigel J. Cairns, John C. Morris, Oscar Harari, Carlos Cruchaga
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms8121974

Transcriptional Profiling of Immune and Inflammatory Responses in the Context of SARS-CoV-2 Fungal Superinfection in a Human Airway Epithelial Model
Cited by: 5
Author(s): Claire Nicolas de Lamballerie, Andrés Pizzorno, Julien Fouret, Lea Szpiro, Blandine Padey, Julia Dubois, Thomas Julien, Aurélien Traversier, Victoria Dulière, Pauline Brun, Bruno Lina, Manuel Rosa‐Calatrava, Benjamin Terrier
Software Mentions: 2
Published: almost 4 years ago

10.3389/fnmol.2021.712576

Early Chronic Memantine Treatment-Induced Transcriptomic Changes in Wild-Type and Shank2-Mutant Mice
Cited by: 5
Author(s): Ye-Eun Yoo, Seungjoon Lee, Woohyun Kim, Hyosang Kim, Changuk Chung, Seungmin Ha, Park Jinsu, Yeonseung Chung, Hyojin Kang, Eunjoon Kim
Software Mentions: 1
Published: about 3 years ago

10.1186/s12882-020-02025-y

RNA-Seq identifies condition-specific biological signatures of ischemia-reperfusion injury in the human kidney
Cited by: 13
Author(s): Meeyoung Park, Chae Hwa Kwon, Hong Koo Ha, Miyeun Han, Sang Heon Song
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2020.01240

Distinctive Growth and Transcriptional Changes of the Diatom Seminavis robusta in Response to Quorum Sensing Related Compounds
Cited by: 18
Author(s): Frederike Stock, Gust Bilcke, Sam De Decker, Cristina Maria Osuna-Cruz, Koen Van Den Berge, Emmelien Vancaester, Lieven De Veylder, Klaas Vandepoele, Sven Mangelinckx, Wim Vyverman
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.03472-20

<i>Wolbachia</i> and Virus Alter the Host Transcriptome at the Interface of Nucleotide Metabolism Pathways
Cited by: 18
Author(s): Amelia R.I. Lindsey, Tamanash Bhattacharya, Richard W. Hardy, Irene L. G. Newton
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0207374

RORα controls inflammatory state of human macrophages
Cited by: 40
Author(s): Neda Nejati Moharrami, Erlend Bjørkøy Tande, Liv Ryan, Terje Espevik, Victor L. Boyartchuk
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00253-020-10976-3

The effect of bile acids on the growth and global gene expression profiles in Akkermansia muciniphila
Cited by: 23
Author(s): Tatsuro Hagi, Sharon Y. Geerlings, Bart Nijsse, Clara Belzer
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0231470

The oncogene BCL6 is up-regulated in glioblastoma in response to DNA damage, and drives survival after therapy
Cited by: 9
Author(s): Marie-Sophie Fabre, Nicole M. Stanton, Tania L. Slatter, Samuel C. Lee, Dinindu Senanayake, Rosemary M. A. Gordon, M. Leticia Castro, Matthew R. Rowe, Ahmad Taha, Janice A. Royds, Noelyn Hung, Ari Melnick, Melanie J. McConnell
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2021.634489

Persistent T Cell Repertoire Perturbation and T Cell Activation in HIV After Long Term Treatment
Cited by: 15
Author(s): Chris Turner, James Brown, Emily Shaw, Imran Uddin, Evdokia Tsaliki, Jennifer Roe, Gabriele Pollara, Yuxin Sun, James Heather, Marc Lipman, Benny Chain, Mahdad Noursadeghi
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pgen.1008356

Ataxin2 functions via CrebA to mediate Huntingtin toxicity in circadian clock neurons
Cited by: 9
Author(s): Fangke Xu, Elżbieta Kula-Eversole, Marta Iwanaszko, Chunghun Lim, Ravi Allada
Software Mentions: 1
Published: about 5 years ago

10.1186/s12931-020-01537-3

Differential transcriptomics in sarcoidosis lung and lymph node granulomas with comparisons to pathogen-specific granulomas
Cited by: 15
Author(s): Nancy G. Casanova, Manuel L. Gonzalez-Garay, Belinda Sun, Christian Bime, Xiaoguang Sun, Kenneth S. Knox, Elliott D. Crouser, Nora Sammani, Taylor Gonzales, Bhupinder Natt, Sachin Chaudhary, Yves A. Lussier, Joe G.N. Garcia
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-33901-1

An autoimmune disease risk SNP, rs2281808, in SIRPG is associated with reduced expression of SIRPγ and heightened effector state in human CD8 T-cells
Cited by: 11
Author(s): Sushmita Sinha, Nicholas Borcherding, Pranav S Renavikar, Michael P. Crawford, Eva Tsalikian, Michael Tansey, E Torage Shivapour, Frank Bittner, John Kamholz, Heena Olalde, Emilee Gibson, Nitin J. Karandikar
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-018-5083-1

Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus
Cited by: 12
Author(s): Diana Sánchez-Rangel, Eric E. Hernández-Domínguez, Claudia-Anahí Pérez-Torres, Randy Ortíz-Castro, Emanuel Villafán, Benjamín Rodríguez-Haas, Alexandro Alonso-Sánchez, Abel López-Buenfil, Nayeli Carrillo-Ortiz, Lervin Hernández-Ramos, Enrique Ibarra-Laclette
Software Mentions: 1
Published: about 6 years ago

10.1136/jitc-2020-000544

Incomplete Freund’s adjuvant reduces arginase and enhances Th1 dominance, TLR signaling and CD40 ligand expression in the vaccine site microenvironment
Cited by: 12
Author(s): Karlyn Pollack, Max O. Meneveau, Marit M. Melssen, Kevin Lynch, Alexander F. Koeppel, Steven Young, Stephen D. Turner, Pankaj Kumar, Katia Sol‐Church, Ileana S. Mauldin, Craig L. Slingluff
Software Mentions: 1
Published: over 4 years ago

10.1186/s12860-021-00346-w

Conserved paradoxical relationships among the evolutionary, structural and expressional features of KRAB zinc-finger proteins reveal their special functional characteristics
Cited by: 6
Author(s): Pan Shen, Aotian Xu, Yushan Hou, Huqiang Wang, Chao Gao, Fuchu He, Dong Yang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fphar.2021.679741

Patient Derived Colonoids as Drug Testing Platforms–Critical Importance of Oxygen Concentration
Cited by: 8
Author(s): Helene Kolstad Skovdahl, Shreya Gopalakrishnan, Tarjei Dahl Svendsen, Atle van Beelen Granlund, Ingrid Bakke, Zekarias Ginbot, Silje Thorsvik, Arnar Flatberg, Bjørnar Sporsheim, Jenny Ostrop, Tom Eirik Mollnes, Arne K. Sandvik
Software Mentions: 1
Published: over 3 years ago

10.1038/s41597-020-0508-5

A clinically and genomically annotated nerve sheath tumor biospecimen repository
Cited by: 13
Author(s): Kai Pollard, Jineta Banerjee, Xengie Doan, Jiawan Wang, Xindi Guo, Robert J. Allaway, Shannon Langmead, Bronwyn Slobogean, Christian F. Meyer, David M. Loeb, Carol D. Morris, Allan J. Belzberg, Jaishri O. Blakeley, Fausto J. Rodríguez, Justin Guinney, Sara J.C. Gosline, Christine A. Pratilas
Software Mentions: 1
Published: over 4 years ago

10.3390/pathogens6010009

RTA Occupancy of the Origin of Lytic Replication during Murine Gammaherpesvirus 68 Reactivation from B Cell Latency
Cited by: 10
Author(s): Alexis Santana, Darby G. Oldenburg, Varvara Kirillov, Laraib Malik, Qiwen Dong, Roman Sinayev, Kenneth B. Marcu, Douglas W. White, Laurie T. Krug
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13567-020-00768-y

Dynamic transcriptomic changes of goat abomasal mucosa in response to Haemonchus contortus infection
Cited by: 17
Author(s): Hadeer M. Aboshady, Nathalie Mandonnet, Yoann Felicite, Julien Hira, Aurore Fourcot, Claude Barbier, Anna M. Johansson, Elisabeth Jonas, Jean-Christophe Bambou
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0255500

Magnetic resonance radiomics features and prognosticators in different molecular subtypes of pediatric Medulloblastoma
Cited by: 15
Author(s): Feng Chi Chang, Tai-Tong Wong, Kuo Sheng Wu, Chia‐Feng Lu, Ting Wei Weng, Muh Lii Liang, Chao‐Hsiung Wu, Wan Yuo Guo, Cheng-Yu Chen, Kevin Hsieh
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2020.582396

MicroRNAs Regulate Metabolic Phenotypes During Multicellular Tumor Spheroids Progression
Cited by: 2
Author(s): Erick Andrés Muciño-Olmos, Aarón Vázquez-Jiménez, Diana Elena López-Esparza, Vilma Maldonado, Mahara Valverde, Osbaldo Reséndis-Antonio
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.bbr.2018.05.015

Environmentally enriched pigs have transcriptional profiles consistent with neuroprotective effects and reduced microglial activity
Cited by: 9
Author(s): Sarah M. Brown, Stephen J. Bush, Kim M. Summers, David Hume, Alistair B. Lawrence
Software Mentions: 1
Published: about 6 years ago

10.3389/fonc.2019.00504

Cooperation Between the Inflammation and Coagulation Systems Promotes the Survival of Circulating Tumor Cells in Renal Cell Carcinoma Patients
Cited by: 28
Author(s): Li Wen, Liping Guo, Wen Zhang, Yajian Li, Weixing Jiang, Di Xia, Jin Ma, Feng Li, Kaitai Zhang, Jianzhong Shou
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.746513

Multi-Omics Approach to Dissect the Mechanisms of Rexinoid Signaling in Myoblast Differentiation
Cited by: 3
Author(s): Saadia Khilji, Yuan Li, Jihong Chen, Qiao Li
Software Mentions: 1
Published: about 3 years ago

Projects: bioconductor: tximport

Papers Mentioning tximport 367