Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: rtracklayer
https://packages.ecosyste.ms/registries/bioconductor.org/packages/rtracklayer
R interface to genome annotation files and the UCSC genome browser
2 versions
Latest release: 12 months ago
237 dependent packages
3,529,318 downloads total
Papers Mentioning rtracklayer 107
10.1038/s41597-019-0136-0
Temporally replicated DNA methylation patterns in great tit using reduced representation bisulfite sequencingCited by: 16
Author(s): Hannu Mäkinen, Heidi M. Viitaniemi, Marcel E. Visser, Irene Verhagen, Kees van Oers, Arild Husby
Software Mentions: 2
Published: about 5 years ago
10.1093/bioinformatics/btv562
regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation testsCited by: 330
Author(s): Bernat Gel, Anna Díez-Villanueva, Eduard Serra, Marcus Buschbeck, Miguel A. Peinado, Roberto Malinverni
Software Mentions: 2
Published: about 9 years ago
10.1186/s12967-015-0384-5
DNA methylation patterns in newborns exposed to tobacco in uteroCited by: 70
Author(s): Carmen Ivorra, Mario F. Fraga, Gustavo F. Bayón, Agustín F. Fernández, Consuelo García-Vicent, Felipe Javier Chaves, Josep Redón, Empar Lurbe
Software Mentions: 2
Published: over 9 years ago
10.1186/s12859-015-0701-2
CompGO: an R package for comparing and visualizing Gene Ontology enrichment differences between DNA binding experimentsCited by: 35
Author(s): Ashley J. Waardenberg, Samuel D. Bassett, Romaric Bouveret, Richard P. Harvey
Software Mentions: 1
Published: about 9 years ago
10.1038/s41598-021-83352-4
Spectrum of mutational signatures in T-cell lymphoma reveals a key role for UV radiation in cutaneous T-cell lymphomaCited by: 28
Author(s): Christine L. Jones, Andrea Degasperi, Vieri Grandi, Tauanne Dias Amarante, Tracey Mitchell, Serena Nik-Zainal, Sean Whittaker
Software Mentions: 1
Published: over 3 years ago
10.1186/s40169-015-0054-5
Psoriasis drug development and GWAS interpretation through <i>in silico</i> analysis of transcription factor binding sitesCited by: 37
Author(s): William R. Swindell, Mrinal K. Sarkar, Philip E. Stuart, John J. Voorhees, James T. Elder, Andrew Johnston, Jóhann E. Guðjónsson
Software Mentions: 1
Published: over 9 years ago