Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: r3Cseq
https://packages.ecosyste.ms/registries/bioconductor.org/packages/r3Cseq
Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)
1 version
Latest release: 10 months ago
31,096 downloads total
Papers Mentioning r3Cseq 7
10.1186/s12864-015-2140-x
GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction dataCited by: 54
Author(s): Nathan Harmston, Elizabeth Ing-Simmons, Malcolm Perry, Anja Barešić, Boris Lenhard
Software Mentions: 15
Published: over 8 years ago
10.3389/fgene.2019.01372
4See: A Flexible Browser to Explore 4C DataCited by: 12
Author(s): Yousra Ben Zouari, Angeliki Platania, Anne Molitor, Tom Sexton
Software Mentions: 7
Published: over 4 years ago
10.7554/eLife.34077
Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liverCited by: 51
Author(s): Bryan J. Matthews, David J. Waxman
Software Mentions: 5
Published: about 6 years ago
10.1038/s41419-017-0173-6
Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiationCited by: 22
Author(s): Yanjian Li, Yi He, Zhengyu Liang, Yang Wang, Fengling Chen, Mohamed Nadhir Djekidel, Guipeng Li, Xu Zhang, Shuqin Xiang, Zejun Wang, Juntao Gao, Michael Q. Zhang, Chen Yang
Software Mentions: 4
Published: over 6 years ago
10.1186/s13059-014-0536-6
TNFα signalling primes chromatin for NF-κB binding and induces rapid and widespread nucleosome repositioningCited by: 41
Author(s): Sarah D. Diermeier, Petros Kolovos, Leonhard Heizinger, Uwe Schwartz, Theodore Georgomanolis, Anne Zirkel, Gero Wedemann, Frank Grosveld, Tobias Knoch, Rainer Merkl, Peter R. Cook, Gernot Längst, Argyris Papantonis
Software Mentions: 4
Published: over 9 years ago
10.1093/bioinformatics/btv335
FourCSeq: analysis of 4C sequencing dataCited by: 85
Author(s): Felix A. Klein, Tibor Pakozdi, Simon Anders, Yad Ghavi-Helm, Eileen E. M. Furlong, Wolfgang Huber
Software Mentions: 3
Published: about 9 years ago
10.1186/s13059-020-01984-7
Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selectionCited by: 45
Author(s): Zhilian Jia, Jingwei Li, Xijin Ge, Yonghu Wu, Ya Guo, Qiang Wu
Software Mentions: 3
Published: over 4 years ago