Projects: bioconductor: qpgraph
https://packages.ecosyste.ms/registries/bioconductor.org/packages/qpgraph
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
1 version
Latest release: over 2 years ago
1 dependent package
51,473 downloads total
Enhanced Analysis
Educational Contributors:
robert.castelo@upf.edu
jennifer.wokaty@sph.cuny.edu
lawremi@iastate.edu
Repository Activity:
Repository Owner:
Robert Castelo (user)
biostatistics, machine learning, genetics, genomics, R/Bioconductor
biostatistics, machine learning, genetics, genomics, R/Bioconductor
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+8
Academic maintainer emails
1 maintainers with academic email addresses -
+60
Educational commit emails
3 contributors with educational email addresses -
+10
Educational website
Repository owner has educational domain website -
+8
Science terms in README
4 scientific terms found in README
Penalties:
-
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (100)
Papers Mentioning qpgraph 9
10.1093/gbe/evaa062
The Origin and Composition of Korean Ethnicity Analyzed by Ancient and Present-Day Genome SequencesCited by: 16
Author(s): Jung-Eun Kim, Sungwon Jeon, Jae-Pil Choi, Asta Blažytė, Yeonsu Jeon, Jong‐Il Kim, Jun Ohashi, Katsushi Tokunaga, Sumio Sugano, Suthat Fucharoen, Fahd Al-Mulla, Jong Bhak
Software Mentions: 5
Published: about 6 years ago
10.1002/cam4.3526
Construction of a disease‐specific lncRNA‐miRNA‐mRNA regulatory network reveals potential regulatory axes and prognostic biomarkers for hepatocellular carcinomaCited by: 12
Author(s): Qi Zhang, Lin Sun, Qiuju Zhang, Wei Zhang, Wei Tian, Meina Liu, Yupeng Wang
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0171046
Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative ExplorationCited by: 79
Author(s): Kwanjeera Wanichthanarak, Sili Fan, Dmitry Grapov, Dinesh Kumar Barupal, Oliver Fiehn
Software Mentions: 4
Published: over 9 years ago
10.1186/1752-0509-4-121
Gene set analysis exploiting the topology of a pathwayCited by: 62
Author(s): M. Sofia Massa, Monica Chiogna, Chiara Romualdi
Software Mentions: 4
Published: almost 16 years ago
10.1186/1471-2164-15-1144
Co-acting gene networks predict TRAIL responsiveness of tumour cells with high accuracyCited by: 1
Author(s): Paul G. O’Reilly, Csaba Ortutay, Gráinne Gernon, Enda O’Connell, Cathal Seoighe, Susan Boyce, Luís Serrano, Éva Szegezdi
Software Mentions: 3
Published: over 11 years ago
10.1371/journal.pone.0015744
Serum Lipidomics Meets Cardiac Magnetic Resonance Imaging: Profiling of Subjects at Risk of Dilated CardiomyopathyCited by: 30
Author(s): Marko Sysi-Aho, Juha Koikkalainen, Tuulikki Seppänen‐Laakso, Maija Kaartinen, Johanna Kuusisto, Keijo Peuhkurinen, Satu Kärkkäinen, Margareta Antila, Kirsi-Maria Susanna Lauerma, Eeva Reissell, Raija Jurkko, Jyrki Lötjönen, Tiina Heliö, Matej Orešič
Software Mentions: 2
Published: over 15 years ago
10.3389/fgene.2021.733195
Indigenous Ancestry and Admixture in the Uruguayan PopulationCited by: 6
Author(s): Lucía Spangenberg, María Inés Fariello, Darío Arce, Gabriel Illanes, Gonzalo Greif, Jong-Yeon Shin, Seong-Keun Yoo, Jeong‐Sun Seo, Carlos Robello, Changhoon Kim, John Novembre, Mónica Sans, Hugo Naya
Software Mentions: 2
Published: over 4 years ago
10.1186/s13040-017-0140-x
Computational dynamic approaches for temporal omics data with applications to systems medicineCited by: 22
Author(s): Yong Liang, Arpad Kelemen
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0094102
Monocyte to Macrophage Differentiation Goes along with Modulation of the Plasmalogen Pattern through Transcriptional RegulationCited by: 40
Author(s): Stefan Wallner, Margot Grandl, Tatiana Konovalova, Alexander Sigrüner, Thomas Kopf, Markus Peer, Evelyn Orsó, Gerhard Liebisch, Gerd Schmitz
Software Mentions: 1
Published: about 12 years ago