Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: phenoTest

https://packages.ecosyste.ms/registries/bioconductor.org/packages/phenoTest

Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.
1 version
Latest release: about 1 year ago
1 dependent package
28,897 downloads total

Papers Mentioning phenoTest 6

10.1186/s12885-017-3106-y

Low CCL17 expression associates with unfavorable postoperative prognosis of patients with clear cell renal cell carcinoma
Cited by: 6
Author(s): Ying Xiong, Li Liu, Xinbing Yu, Jiajun Wang, Wei Xi, Qi Bai, Yang Qu, Jiejie Xu, Jianming Guo
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2164-15-S1-S13

Application of microRNA and mRNA expression profiling on prognostic biomarker discovery for hepatocellular carcinoma
Cited by: 35
Author(s): Lin Wei, Baofeng Lian, Yuannv Zhang, Wei Li, Jianren Gu, Xiang He, Lu Xie
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12885-017-3065-3

Prognostic value of CC-chemokine receptor seven expression in patients with metastatic renal cell carcinoma treated with tyrosine kinase inhibitor
Cited by: 9
Author(s): Xinbing Yu, Li Liu, Ying Xiong, Qi Bai, Jiajun Wang, Wei Xi, Yang Qu, Jianming Guo
Software Mentions: 2
Published: almost 8 years ago

10.15252/emmm.201303675

<i><scp>RARRES</scp>3</i> suppresses breast cancer lung metastasis by regulating adhesion and differentiation
Cited by: 60
Author(s): M.L González Morales, Enrique J. Arenas, Jelena Urosevic, Marc Guiu, Esther Fernández, Evarist Planet, R. Bryn Fenwick, Sonia Fernández-Ruiz, Xavier Salvatella, David Reverter, Arkaitz Carracedo, Joan Massagué, Roger R. Gomis
Software Mentions: 2
Published: over 10 years ago

10.1002/1878-0261.12099

Analysis of mutant allele fractions in driver genes in colorectal cancer – biological and clinical insights
Cited by: 26
Author(s): Rodrigo Dienstmann, Élena Elez, Guillem Argilés, Ignacio Matos, Enrique Sanz-García, Carolina Ortiz, Teresa Macarulla, Jaume Capdevila, María Alsina, Tamara Saurí, Helena Verdaguer, Marta Vilaró, Fiorella Ruiz-Pace, Cristina Viaplana, Ariadna García, Stefania Landolfi, Héctor G. Pálmer, Paolo Nuciforo, Jordi Rodón, Ana Vivancos, Josep Tabernero
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.12827

Low CCL-21 expression associates with unfavorable postoperative prognosis of patients with metastatic renal cell carcinoma
Cited by: 6
Author(s): Ying Xiong, Li Liu, Jiajun Wang, Wei Xi, Xinbing Yu, Qi Bai, Yang Qu, Qilai Long, Jiejie Xu, Jianming Guo
Software Mentions: 1
Published: about 8 years ago