Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: pathifier
https://packages.ecosyste.ms/registries/bioconductor.org/packages/pathifier
Quantify deregulation of pathways in cancer
1 version
Latest release: 12 months ago
38,713 downloads total
Papers Mentioning pathifier 7
10.3389/fonc.2020.557638
Tumor-Infiltrating Immune Cell Signature Predicts the Prognosis and Chemosensitivity of Patients With Pancreatic Ductal AdenocarcinomaCited by: 21
Author(s): Yinghong Gao, Shipeng Chen, Somayeh Vafaei, Xiaoli Zhong
Software Mentions: 6
Published: about 4 years ago
10.1038/s41598-020-70703-w
Peripheral serum metabolomic profiles inform central cognitive impairmentCited by: 21
Author(s): Jingye Wang, Runmin Wei, Guoxiang Xie, Matthias Arnold, Alexandra Kueider‐Paisley, Gregory Louie, Siamak Mahmoudian Dehkordi, Colette Blach, Rebecca Baillie, Xianlin Han, Philip L. De Jager, David A. Bennett, Rima Kaddurah‐Daouk, Jia Wang
Software Mentions: 6
Published: about 4 years ago
10.1186/1755-8794-7-32
Conserved recurrent gene mutations correlate with pathway deregulation and clinical outcomes of lung adenocarcinoma in never-smokersCited by: 45
Author(s): Zhifu Sun, Liang Wang, Bruce W. Eckloff, Bo Deng, Yi Wang, Jason A. Wampfler, Jiseon Jang, Eric D. Wieben, Jin Jen, Ming You, Ping Yang
Software Mentions: 4
Published: over 10 years ago
10.1111/jcmm.16573
Development and validation of glycolysis‐related prognostic score for prediction of prognosis and chemosensitivity of pancreatic ductal adenocarcinomaCited by: 7
Author(s): Xiuping Zhang, Qinjunjie Chen, Qu Liu, Yang Wang, Fei Wang, Zhiming Zhao, Guodong Zhao, Wan Yee Lau, Yinghong Gao, Rong Liu
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-76555-8
Transcriptome and methylome analysis reveals three cellular origins of pituitary tumorsCited by: 22
Author(s): Keiko Taniguchi‐Ponciano, Sergio Andonegui-Elguera, Eduardo Peña-Martínez, Gloria Silva-Román, Sandra Vela-Patiño, Erick Gómez‐Apo, Laura Chávez-Macías, Guadalupe Vargas‐Ortega, Laura Espinosa-de-los-Monteros, Baldomero González‐Virla, Carolina Velázquez Pérez, Aldo Ferreira‐Hermosillo, Etual Espinosa-Cárdenas, Claudia Ramírez‐Rentería, Ernesto Sosa, Blas López-Félix, Gerardo Guinto, Daniel Marrero‐Rodríguez, Moisés Mercado
Software Mentions: 2
Published: almost 4 years ago
10.1186/s13148-015-0052-x
Genome-scale hypomethylation in the cord blood DNAs associated with early onset preeclampsiaCited by: 42
Author(s): Travers Ching, James C. Ha, Min-Ae Song, Maarit Tiirikainen, J. Molnár, Marla J. Berry, Dena Towner, Lana X. Garmire
Software Mentions: 2
Published: over 9 years ago
10.1186/s13073-016-0289-9
Novel personalized pathway-based metabolomics models reveal key metabolic pathways for breast cancer diagnosisCited by: 111
Author(s): Sijia Huang, Nicole Chong, Nathan E. Lewis, Jia Wang, Guoxiang Xie, Lana X. Garmire
Software Mentions: 1
Published: over 8 years ago