bioconductor: multtest | Projects

10.3389/fpls.2018.01223

Genome Wide Association Mapping of Grain and Straw Biomass Traits in the Rice Bengal and Assam Aus Panel (BAAP) Grown Under Alternate Wetting and Drying and Permanently Flooded Irrigation
Cited by: 33
Author(s): Gareth J. Norton, Anthony J. Travis, Alex Douglas, Susan Fairley, Eduardo Rodrigues Alves, Panthita Ruang-areerate, Elizabeth B. Naredo, Kenneth L. McNally, Mahmud Hossain, Rafiqul Islam, Adam H. Price
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2019.00633

Spatial Effects and GWA Mapping of Root Colonization Assessed in the Interaction Between the Rice Diversity Panel 1 and an Arbuscular Mycorrhizal Fungus
Cited by: 18
Author(s): Hazel Davidson, Roshi Shrestha, Thomas Cornulier, Alex Douglas, T. J. Travis, David Johnson, Adam H. Price
Software Mentions: 2
Published: over 5 years ago

10.3390/genes11010052

Evaluation of the Abundance of DNA-Binding Transcription Factors in Prokaryotes
Cited by: 13
Author(s): Ignacio Escotto Sánchez, Rafael Hernandez-Guerrero, Paul E. Méndez-Monroy, Mario Alberto Martínez-Núñez, J. Antonio Ibarra, Ernesto Pérez‐Rueda
Software Mentions: 2
Published: almost 5 years ago

10.1186/gb-2006-7-8-r77

Cited by: 22
Author(s): Florian Hahne, Dorit Arlt, Mamatha Sauermann, Meher Majety, Annemarie Poustka, Stefan Wiemann, Wolfgang Huber
Software Mentions: 2
Published: almost 19 years ago

10.1186/gb-2009-10-4-r43

The bovine lactation genome: insights into the evolution of mammalian milk
Cited by: 174
Author(s): Danielle G. Lemay, David J. Lynn, William Martin, Margaret C. Neville, Theresa Casey, Gonzalo Rincón, Evgenia V. Kriventseva, Wesley C. Barris, Angie S. Hinrichs, Adrian Molenaar, Katherine S. Pollard, Nauman J. Maqbool, Kuljeet Singh, R. Murney, Evgeny M. Zdobnov, Ross L. Tellam, Juan F. Medrano, J. Bruce German, Monique Rijnkels
Software Mentions: 2
Published: almost 16 years ago

10.1186/s41065-020-00142-0

Identification of potential crucial genes and key pathways in osteosarcoma
Cited by: 18
Author(s): Junwei Liu, Siyu Wu, Xiaoyu Xie, Ziming Wang, Qinghua Lei
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2407-9-93

QPRT: a potential marker for follicular thyroid carcinoma including minimal invasive variant; a gene expression, RNA and immunohistochemical study
Cited by: 27
Author(s): Nora Hinsch, Matthias Frank, Claudia Döring, Christian Vorländer, Martin‐Leo Hansmann
Software Mentions: 2
Published: over 15 years ago

10.1186/s12915-021-01044-x

Very long intergenic non-coding (vlinc) RNAs directly regulate multiple genes in cis and trans
Cited by: 12
Author(s): Huifen Cao, Dongyang Xu, Ye Cai, Xueer Han, Lu Tang, Fan Gao, Yanfei Qi, Dingding Cai, Hong Wang, Maxim Ri, Денис Антонец, Yuri Vyatkin, Yue Chen, Xiang You, Fang Wang, Estelle Nicolas, Philipp Kapranov
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-43478-y

Dynamics of archaeal community in soil with application of composted tannery sludge
Cited by: 14
Author(s): Ana Roberta Lima Miranda, Lucas William Mendes, Leandro Nascimento Lemos, Jadson Emanuel Lopes Antunes, Marineide Rodrigues do Amorim, Vânia Maria Maciel Melo, Wanderley José de Melo, Paul J. Van den Brink, Ademir Sérgio Ferreira de Araújo
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/3659451

HYAL1 Is Downregulated in Idiopathic Pulmonary Fibrosis and Inhibits HFL-1 Fibroblast Proliferation When Upregulated
Cited by: 6
Author(s): Liubing Dong, Xiaoxi Huang, Jiawen Yi, Hongying Zhao, Yuhui Zhang
Software Mentions: 2
Published: over 4 years ago

10.7189/jogh.10.021002

Impact of the Ananya program on reproductive, maternal, newborn and child health and nutrition in Bihar, India: early results from a quasi-experimental study.
Cited by: 4
Author(s): Gary L. Darmstadt, Yingjie Weng, Kevin T Pepper, Victoria Ward, Kala M. Mehta, Evan Borkum, Jason Bentley, Hina Raheel, Anu Rangarajan, Debarshi Bhattacharya, Usha Kiran Tarigopula, Priya Nanda, Swetha Sridharan, Dana Rotz, Suzan L. Carmichael, Safa Abdalla, Wolfgang Munar
Software Mentions: 2
Published: almost 4 years ago

10.1128/MCB.00145-13

Epigenetic Functions of Smchd1 Repress Gene Clusters on the Inactive X Chromosome and on Autosomes
Cited by: 96
Author(s): Anne-Valérie Gendrel, Y. Amy Tang, Masako Suzuki, Jonathan Godwin, Tatyana B. Nesterova, John M. Greally, Edith Heard, Neil Brockdorff
Software Mentions: 2
Published: over 11 years ago

10.1002/mgg3.1391

Overexpression of SNTG2, TRAF3IP2, and ITGA6 transcripts is associated with osteoporotic vertebral fracture in elderly women from community
Cited by: 8
Author(s): Levi H. Jales Neto, Zofia Wicik, Geórgea Hermógenes Fernandes Torres, Liliam Takayama, Valéria F. Caparbo, Neuza Lopes, Alexandre C. Pereira, Rosa Maria Rodrigues Pereira
Software Mentions: 2
Published: over 4 years ago

10.1186/2047-783X-18-37

RETRACTED ARTICLE: Screening of key genes in gastric cancer with DNA microarray analysis
Cited by: 15
Author(s): Yong Jin, Wang Da
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0121800

Genome-Wide Identification, Characterization and Evolutionary Analysis of Long Intergenic Noncoding RNAs in Cucumber
Cited by: 65
Author(s): Zhiqiang Hao, Chunxiao Fan, Tian Cheng, Ya Su, Qiang Wei, Guanglin Li
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0132477

Growth Arrest Specific 1 (Gas1) Gene Overexpression in Liver Reduces the In Vivo Progression of Murine Hepatocellular Carcinoma and Partially Restores Gene Expression Levels
Cited by: 16
Author(s): Natalia Sacilotto, Josefa Castillo, Ángela L. Riffo‐Campos, Juana M. Flores, Olivia Hibbitt, Richard Wade‐Martins, Carmen López, M. Isabel Rodrigo, Luís Franco, Gerardo López-Rodas
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms141021053

A Genome-Wide Expression Profile of Salt-Responsive Genes in the Apple Rootstock Malus zumi
Cited by: 24
Author(s): Qingtian Li, Jia Liu, Dun‐Xian Tan, Andrew C. Allan, Yuzhuang Jiang, Xuefeng Xu, Zhenhai Han, Jin Kong
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pgen.1000952

Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain
Cited by: 720
Author(s): J. Raphael Gibbs, Marcel P. van der Brug, Dena G. Hernandez, Bryan J. Traynor, Michael A. Nalls, Shiao Lin Lai, Sampath Arepalli, Allissa Dillman, Ian Rafferty, Juan C. Troncoso, Robert Johnson, H. Ronald Zielke, Luigi Ferrucci, Dan L. Longo, Mark Cookson, Andrew B. Singleton
Software Mentions: 1
Published: over 14 years ago

10.1155/2019/6078251

Identification of Differentially Expressed Genes and Long Noncoding RNAs Associated with Parkinson’s Disease
Cited by: 27
Author(s): Lumei Chi, Liping Wang, Dan Jiao
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnut.2020.00131

Bacteria Remediate the Effects of Food Additives on Intestinal Function in an in vitro Model of the Gastrointestinal Tract
Cited by: 9
Author(s): Mridu Malik, Sanjeena Subedi, Cláudia N. H. Marques, Gretchen J. Mahler
Software Mentions: 1
Published: over 4 years ago

10.1186/s12886-015-0066-3

Screening of potential target genes for cataract by analyzing mRNA expression profile of mouse Hsf4-null lens
Cited by: 11
Author(s): Wenjuan Zhao, Wenqing Zhao, Jun Zhao, Dong Wang, Jinghai Li
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0053838

Distinct Distal Gut Microbiome Diversity and Composition in Healthy Children from Bangladesh and the United States
Cited by: 259
Author(s): Audrie Lin, Elisabeth M. Bik, Elizabeth K. Costello, Les Dethlefsen, Rashidul Haque, David A. Relman, Upinder Singh
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0119983

N-Glycomic Changes in Serum Proteins in Type 2 Diabetes Mellitus Correlate with Complications and with Metabolic Syndrome Parameters
Cited by: 77
Author(s): Roberto Testa, Valerie Vanhooren, Anna Rita Bonfigli, Massimo Boemi, Fabiola Olivieri, Antonio Ceriello, Stefano Genovese, Liana Spazzafumo, Vincenzo Borelli, Maria Giulia Bacalini, Stefano Salvioli, Paolo Garagnani, Sylviane Dewaele, Claude Libert, Claudio Franceschi
Software Mentions: 1
Published: over 9 years ago

10.1155/2014/216071

Soil-Borne Microbial Functional Structure across Different Land Uses
Cited by: 7
Author(s): Eiko E. Kuramae, Jizhong Zhou, George A. Kowalchuk, Johannes A. van Veen
Software Mentions: 1
Published: almost 11 years ago

10.3389/fpubh.2013.00063

Multiple Hypotheses Testing Procedures in Clinical Trials and Genomic Studies
Cited by: 5
Author(s): Qing Pan
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2105-7-183

Exploiting the full power of temporal gene expression profiling through a new statistical test: Application to the analysis of muscular dystrophy data
Cited by: 10
Author(s): Veronica Vinciotti, Xiaohui Liu, Rolf Turk, Emile J. de Meijer, Peter A C ‘t Hoen
Software Mentions: 1
Published: over 18 years ago

10.1038/s41398-021-01377-9

Phosphodiesterase 8A to discriminate in blood samples depressed patients and suicide attempters from healthy controls based on A-to-I RNA editing modifications
Cited by: 5
Author(s): Nicolas Salvetat, Fabrice Chimienti, Christopher Cayzac, Benjamin Dubuc, Francisco Jesus Checa-Robles, Pierrick Dupré, Sandie Méreuze, Vipul Patel, C. Genty, Jean-Philippe Lang, Jean‐François Pujol, Philippe Courtet, Dinah Weissmann
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0031283

Blood-Based Gene Expression Profiles Models for Classification of Subsyndromal Symptomatic Depression and Major Depressive Disorder
Cited by: 64
Author(s): Zhenghui Yi, Zezhi Li, Shunying Yu, Chen Yuan, Hong Wu, Zuowei Wang, Jian Cui, Tieliu Shi, Yiru Fang
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0069630

The Human TUT1 Nucleotidyl Transferase as a Global Regulator of microRNA Abundance
Cited by: 30
Author(s): Emily C. Knouf, Stacia K. Wyman, Muneesh Tewari
Software Mentions: 1
Published: over 11 years ago

10.3390/biom9100537

Associations of SNPs of the ADIPOQ Gene with Serum Adiponectin Levels, Unstable Angina, and Coronary Artery Disease
Cited by: 12
Author(s): С. А. Сметнев, М. В. Климушина, В. А. Куценко, А. В. Киселева, Nadezhda G. Gumanova, Alexander Y. Kots, О. П. Скирко, А. И. Ершова, E. B. Yarovaya, V. A. Metelskaya, А. Н. Мешков, О. М. Drapkina
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-14-795

STaRRRT: a table of short tandem repeats in regulatory regions of the human genome
Cited by: 35
Author(s): Katherine Bolton, Jason P. Ross, Desma M. Grice, Nikola A. Bowden, Elizabeth G. Holliday, Kelly A. Avery‐Kiejda, Rodney J. Scott
Software Mentions: 1
Published: about 11 years ago

10.1186/gb-2005-6-2-r12

Cited by: 60
Author(s): Nathan Salomonis, Nathalie Cotte, Alexander C. Zambon, Katherine S. Pollard, Karen Vranizan, Scott Doniger, Gregory Dolganov, Bruce R. Conklin
Software Mentions: 1
Published: almost 20 years ago

10.1186/s13068-016-0657-0

Inhibition of microbial biofuel production in drought-stressed switchgrass hydrolysate
Cited by: 34
Author(s): Rebecca G. Ong, Alan Higbee, Scott Bottoms, Quinn Dickinson, Dan Xie, Scott A. Smith, Jose Serate, Edward L. Pohlmann, A. Daniel Jones, Joshua J. Coon, Trey K. Sato, Gregg R. Sanford, Dustin Eilert, Lawrence G. Oates, Jeff S. Piotrowski, Donna M. Bates, David Cavalier, Yaoping Zhang
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0104625

Identification of Urinary Peptide Biomarkers Associated with Rheumatoid Arthritis
Cited by: 31
Author(s): Angélique Stalmach, Hanna Johnsson, Iain B. McInnes, Holger Husi, Julie Klein, Mohammed Dakna, William Mullen, Harald Mischak, Duncan Porter
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-12-43

MMP1 bimodal expression and differential response to inflammatory mediators is linked to promoter polymorphisms
Cited by: 24
Author(s): Muna Affara, Benjamin J. Dunmore, Deborah A. Sanders, Nicola Johnson, Cristin G. Print, D. Stephen Charnock-Jones
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12862-014-0241-9

Integrative analysis of young genes, positively selected genes and lncRNAs in the development of Drosophila melanogaster
Cited by: 11
Author(s): He-Qun Liu, Yan Li, David M. Irwin, Yaping Zhang, Dongdong Wu
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pmed.0040176

Down-Regulation of the Interferon Signaling Pathway in T Lymphocytes from Patients with Metastatic Melanoma
Cited by: 130
Author(s): Rebecca J. Critchley-Thorne, Ning Yan, Şerban Nacu, Jeffrey S. Weber, Susan Holmes, Peter P. Lee
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pgen.0030029

Large-Scale Evaluation of Candidate Genes Identifies Associations between VEGF Polymorphisms and Bladder Cancer Risk
Cited by: 121
Author(s): Montserrat García‐Closas, Núria Malats, Francisco X. Real, Meredith Yeager, Robert Welch, Debra T. Silverman, Manolis Kogevinas, Mustafa Dosemeci, Jonine D. Figueroa, Nilanjan Chatterjee, Adonina Tardón, Consol Serra, Alfredo Carrato, Reina García-Closas, Cristiane Murta-Nascimento, Nathaniel Rothman, Stephen J. Chanock
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0013552

Functional Protein Network Activation Mapping Reveals New Potential Molecular Drug Targets for Poor Prognosis Pediatric BCP-ALL
Cited by: 43
Author(s): Benedetta Accordi, Virginia Espina, Marco Giordan, Amy VanMeter, Gloria Milani, Luisa Galla, Maria Ruzzene, Manuela Sciro, Luca Trentin, Ruggero De Maria, Geertruy te Kronnie, Emanuel F. Petricoin, Lance A. Liotta, Giuseppe Basso
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2229-9-49

Integration of tomato reproductive developmental landmarks and expression profiles, and the effect of SUN on fruit shape
Cited by: 72
Author(s): Xianpei Han, C. Radovich, N. Welty, Jason C. Hsu, Dongmei Li, Tea Meulia, Esther van der Knaap
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0088848

Analysis of Notch Signaling-Dependent Gene Expression in Developing Airways Reveals Diversity of Clara Cells
Cited by: 37
Author(s): Arjun Guha, Michelle Vasconcelos, Rui Zhao, Adam C. Gower, Jayaraj Rajagopal, Wellington V. Cardoso
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0022556

SEAS: A System for SEED-Based Pathway Enrichment Analysis
Cited by: 9
Author(s): Xizeng Mao, Yu Zhang, Ying Xu
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0174738

A post-GWAS analysis of predicted regulatory variants and tuberculosis susceptibility
Cited by: 16
Author(s): Caitlin Uren, Brenna M. Henn, André Franke, Michael Wittig, Paul D. van Helden, Eileen G. Hoal, Marlo Möller
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0004837

Association and Haplotype Analyses of Positional Candidate Genes in Five Genomic Regions Linked to Scrotal Hernia in Commercial Pig Lines
Cited by: 18
Author(s): Zhiqiang Du, Zhao Xiao, Natascha Vukasinovic, F Rodriguez, A. C. Clutter, Max F. Rothschild
Software Mentions: 1
Published: over 15 years ago

10.1038/s41598-017-15359-9

Urinary peptidomics analysis reveals proteases involved in diabetic nephropathy
Cited by: 25
Author(s): Magdalena Krochmal, Georgia Kontostathi, Pedro Magalhães, Manousos Makridakis, Julie Klein, Holger Husi, Johannes Leierer, Gert Mayer, Jean-Loup Bascands, Colette Denis, Jérôme Zoidakis, Petra Zürbig, Christian Delles, Joost P. Schanstra, Harald Mischak, Antonia Vlahou
Software Mentions: 1
Published: about 7 years ago

10.1186/s12891-017-1705-z

Gene expression profiling in patients with polymyalgia rheumatica before and after symptom-abolishing glucocorticoid treatment
Cited by: 2
Author(s): Frederik Flindt Kreiner, Rehannah Borup, Finn Cilius Nielsen, Peter Schjerling, H. Galbo
Software Mentions: 1
Published: over 7 years ago

10.1038/s41419-017-0241-y

MicroRNA-27a-5p regulation by promoter methylation and MYC signaling in prostate carcinogenesis
Cited by: 44
Author(s): Daniela Barros‐Silva, Pedro Costa-Pinheiro, Hugo Duarte, Elsa Joana Sousa, Adriane Feijó Evangelista, Inês Graça, Isa Carneiro, Ana Teresa Martins, Jorge Oliveira, André Lopes Carvalho, Márcia Maria Chiquitelli Marques, Rui Henrique, Carmen Jerónimo
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.jprot.2010.03.018

Proteomic analysis of Nrf2 deficient transgenic mice reveals cellular defence and lipid metabolism as primary Nrf2-dependent pathways in the liver
Cited by: 142
Author(s): Neil R. Kitteringham, Azman Abdullah, James Walsh, Laura E. Randle, Rosalind E. Jenkins, Rowena L. Sison, Christopher E. Goldring, Helen Powell, Christopher M. Sanderson, Samantha Williams, Larry G. Higgins, Masayuki Yamamoto, John D. Hayes, B. Kevin Park
Software Mentions: 1
Published: over 14 years ago

10.1002/cpe.1787

Optimization of a parallel permutation testing function for the SPRINT R package
Cited by: 4
Author(s): Savvas Petrou, Terence Sloan, Muriel Mewissen, Thorsten Forster, Michał Piotrowski, Bartosz Dobrzelecki, Peter Ghazal, Arthur Trew, Jon Hill
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-018-20641-5

β-catenin-independent regulation of Wnt target genes by RoR2 and ATF2/ATF4 in colon cancer cells
Cited by: 40
Author(s): Oksana Voloshanenko, Uwe Schwartz, D Kranz, Benedikt Rauscher, Michael Linnebacher, Iris Augustin, Michael Boutros
Software Mentions: 1
Published: almost 7 years ago

10.1002/ece3.1455

Limited connectivity and a phylogeographic break characterize populations of the pink anemonefish,Amphiprion perideraion, in the Indo-Malay Archipelago: inferences from a mitochondrial and microsatellite loci
Cited by: 18
Author(s): Tina Dohna, Janne Timm, Lemia Hamid, Marc Kochzius
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2369-15-12

Associations of GSTM1*0 and GSTA1*Agenotypes with the risk of cardiovascular death among hemodialyses patients
Cited by: 8
Author(s): Sonja Šuvakov, Tatjana Damjanović, Tatjana Pekmezović, Jovana Jakovljevic, Ana Savić-Radojević, Marija Plješa-Ercegovac, S. Radovanović, Dragan Simić, Steva Plješa, Miloš Žarković, Jasmina Mimić-Oka, Nada Dimković, Tatjana Simić
Software Mentions: 1
Published: almost 11 years ago

10.1186/1476-069X-9-78

Effect modification of air pollution on Urinary 8-Hydroxy-2'-Deoxyguanosine by genotypes: an application of the multiple testing procedure to identify significant SNP interactions
Cited by: 22
Author(s): Chao Ren, Pantel Vokonas, Helen Suh, Shona C. Fang, David C. Christiani, Joel Schwartz
Software Mentions: 1
Published: almost 14 years ago

10.3390/metabo9110265

Exposure of HepaRG Cells to Sodium Saccharin Underpins the Importance of Including Non-Hepatotoxic Compounds When Investigating Toxicological Modes of Action Using Metabolomics
Cited by: 1
Author(s): Matthias Cuykx, Charlie Beirnaert, Robim Marcelino Rodrigues, Kris Laukens, Tamara Vanhaecke, Adrian Covaci
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0031414

Chromatin States Accurately Classify Cell Differentiation Stages
Cited by: 11
Author(s): Jessica L. Larson, Guo‐Cheng Yuan
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0165856

Development and Application of a Microfluidics-Based Panel in the Basal/Luminal Transcriptional Characterization of Archival Bladder Cancers
Cited by: 1
Author(s): Doris Kim, Youn Jeong Choi, James Ireland, Oded Foreman, Rachel Tam, Rajesh Patel, Erica Schleifman, Maipelo Motlhabi, Dorothy French, Cheryl V. Wong, Eric Peters, Luciana Molinero, Rajiv Raja, Lukas C. Amler, Garret M. Hampton, Mark R. Lackner, Omar Kabbarah
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0029632

Post-GWAS Functional Characterization of Susceptibility Variants for Chronic Lymphocytic Leukemia
Cited by: 36
Author(s): Fenna C.M. Sillé, Reuben Thomas, Martyn T. Smith, Lucía Conde, Christine F. Skibola
Software Mentions: 1
Published: almost 13 years ago

Projects: bioconductor: multtest

Papers Mentioning multtest 158