bioconductor: minfi | Projects | Ecosyste.ms: Papers

10.1186/s12967-020-02453-2

Genome-wide DNA methylation profiling identifies epigenetic signatures of gastric cardiac intestinal metaplasia
Cited by: 8
Author(s): Runhua Lin, Chenxi Li, Zhaohui Liu, Ruinuan Wu, Lu J
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/2207125

Redox Imbalance and Methylation Disturbances in Early Childhood Obesity
Cited by: 10
Author(s): Pedro Barbosa, Stepan Melnyk, Sirish C. Bennuri, Leanna Delhey, Andreia Reis, Gabriela Moura, Elisabet Børsheim, Shannon Rose, Eugénia Carvalho
Software Mentions: 2
Published: over 3 years ago

10.3390/nu13010099

Epigenome-Wide Association of Infant Feeding and Changes in DNA Methylation from Birth to 10 Years
Cited by: 13
Author(s): Yamini Mallisetty, Nandini Mukherjee, Yu Jiang, Su Chen, Susan Ewart, Syed Hasan Arshad, John W. Holloway, Hongmei Zhang, Wilfried Karmaus
Software Mentions: 2
Published: almost 4 years ago

10.3390/nu9070752

Fruit and Juice Epigenetic Signatures Are Associated with Independent Immunoregulatory Pathways
Cited by: 10
Author(s): Jessie Nicodemus‐Johnson, Robert Sinnott
Software Mentions: 2
Published: over 7 years ago

10.3390/nu12123697

DNA Methylation Profiles of Vegans and Non-Vegetarians in the Adventist Health Study-2 Cohort
Cited by: 7
Author(s): Fayth L. Miles, Andrew Mashchak, Valery Filippov, Michael J. Orlich, Penelope J. Duerksen-Hughes, Xin Chen, Charles Wang, Kimberly D. Siegmund, Gary E. Fraser
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12885-019-5291-3

DNA methylation associates with survival in non-metastatic clear cell renal cell carcinoma
Cited by: 19
Author(s): Emma Andersson Evelönn, Mattias Landfors, Zahra Haider, Linda M. Kohn, Börje Ljungberg, Göran Roos, Sofie Degerman
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-24907-w

MALAT1: An Epigenetic Regulator of Inflammation in Diabetic Retinopathy
Cited by: 115
Author(s): Saumik Biswas, Anoop Thomas, Shali Chen, Erfan Aref‐Eshghi, Biao Feng, John R. Gonder, Bekim Sadiković, Subrata Chakrabarti
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-24240-2

Analysis of early changes in DNA methylation in synovial fibroblasts of RA patients before diagnosis
Cited by: 52
Author(s): Emmanuel Karouzakis, Karim Raza, Christoph Kolling, Christopher D. Buckley, Andrew Filer, Caroline Ospelt
Software Mentions: 1
Published: over 6 years ago

10.1186/s12940-020-00677-9

DNA methylation of insulin-like growth factor 2 and H19 cluster in cord blood and prenatal air pollution exposure to fine particulate matter
Cited by: 20
Author(s): Congrong Wang, Michelle Plusquin, Akram Ghantous, Zdenko Herceg, Rossella Alfano, Bianca Cox, Tim S. Nawrot
Software Mentions: 1
Published: almost 4 years ago

10.15252/emmm.201505439

Aberrant epigenome in <scp>iPSC</scp> ‐derived dopaminergic neurons from Parkinson's disease patients
Cited by: 112
Author(s): Rubén Fernández‐Santiago, Iria Carballo‐Carbajal, Giancarlo Castellano, Roger Torrent, Yvonne Richaud, Adriana Sánchez‐Danés, Roser Vilarrasa‐Blasi, Álex Sánchez-Plà, José Luis Mosquera, Jordi Soriano, José López‐Barneo, Josep M. Canals, Jordi Alberch, Ángel Raya, Miquel Vila, Antonella Consiglio, José I. Martín‐Subero, Mario Ezquerra, Eduardo Tolosa
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-018-32393-3

Methylation deregulation of miRNA promoters identifies miR124-2 as a survival biomarker in Breast Cancer in very young women
Cited by: 37
Author(s): Silvestre Oltra, María Peña‐Chilet, Victoria Vidal-Tomas, Kirsty Flower, María Teresa Martínez, Elisa Alonso, Octavio Burgués, Ana Lluch, James M. Flanagan, G. Ribas
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34003-8

Epigenome-wide methylation differences in a group of lean and obese women – A HUNT Study
Cited by: 25
Author(s): Kirsti Kvaløy, Christian M. Page, Turid Lingaas Holmen
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-35621-y

Epigenetic Heterogeneity in Human Colorectal Tumors Reveals Preferential Conservation And Evidence of Immune Surveillance
Cited by: 17
Author(s): Marc D. Ryser, Ming Yu, William M. Grady, Kimberly D. Siegmund, Darryl Shibata
Software Mentions: 1
Published: about 6 years ago

10.1186/s13148-019-0616-2

Exploring the effect of antenatal depression treatment on children’s epigenetic profiles: findings from a pilot randomized controlled trial
Cited by: 10
Author(s): Laura S. Bleker, Jeannette Milgrom, Alexandra Sexton-Oates, Tessa J. Roseboom, Alan W. Gemmill, Christopher J. Holt, Richard Saffery, Huibert Burger, Susanne R. de Rooij
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-38009-0

A distinctive DNA methylation pattern in insufficient sleep
Cited by: 28
Author(s): Aira Lahtinen, Sampsa Puttonen, Päivi Vanttola, Katriina Viitasalo, Sonja Sulkava, Natalia Pervjakova, Anni Joensuu, Perttu Salo, Auli Toivola, Mikko Härmä, Lili Milani, Markus Perola, Tiina Paunio
Software Mentions: 1
Published: almost 6 years ago

10.1186/1472-6750-13-23

The use of DNA from archival dried blood spots with the Infinium HumanMethylation450 array
Cited by: 54
Author(s): Jihoon E. Joo, Ee Ming Wong, Laura Baglietto, Chol‐Hee Jung, Helen Tsimiklis, Daniel J. Park, Nicholas C. Wong, Dallas R. English, John L. Hopper, Gianluca Severi, Graham G. Giles, Melissa C. Southey
Software Mentions: 1
Published: over 11 years ago

10.1186/s13148-019-0615-3

Improved filtering of DNA methylation microarray data by detection p values and its impact on downstream analyses
Cited by: 30
Author(s): Jonathan Heiss, Allan C. Just
Software Mentions: 1
Published: almost 6 years ago

10.1186/1472-6750-14-60

Optimized DNA extraction from neonatal dried blood spots: application in methylome profiling
Cited by: 36
Author(s): Akram Ghantous, Richard Saffery, Marie-Pierre Cros, Anne–Louise Ponsonby, Steven Hirschfeld, Carol H. Kasten, Terence Dwyer, Zdenko Herceg, Héctor Hernandez-Vargas
Software Mentions: 1
Published: over 10 years ago

10.1186/s13148-018-0543-7

Association of internal smoking dose with blood DNA methylation in three racial/ethnic populations
Cited by: 32
Author(s): Sungshim L. Park, Yesha Patel, Lenora W. M. Loo, Daniel J. Mullen, Ite A. Offringa, Alika K. Maunakea, Daniel O. Stram, Kimberly D. Siegmund, Sharon E. Murphy, Maarit Tiirikainen, Loı̈c Le Marchand
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-016-1056-z

Stochastic epigenetic outliers can define field defects in cancer
Cited by: 33
Author(s): Andrew E. Teschendorff, Allison Jones, Martin Widschwendter
Software Mentions: 1
Published: over 8 years ago

10.1186/s13148-018-0551-7

Establishing a stable, repeatable platform for measuring changes in sperm DNA methylation
Cited by: 7
Author(s): Mohammad Reza Abbasi, Andrew D. Smith, Harish Swaminathan, Peer Sangngern, Amanda Douglas, Alan Horsager, Douglas T. Carrell, Philip J. Uren
Software Mentions: 1
Published: about 6 years ago

10.1186/s13148-019-0727-9

Duration of breastfeeding is associated with leptin (LEP) DNA methylation profiles and BMI in 10-year-old children
Cited by: 31
Author(s): William B. Sherwood, Victoria Bion, Gabrielle A. Lockett, Ali H. Ziyab, Nelís Soto‐Ramírez, Nandini Mukherjee, Ramesh Kurukulaaratchy, Susan Ewart, Hongmei Zhang, Syed Hasan Arshad, Wilfried Karmaus, John W. Holloway, Faisal I. Rezwan
Software Mentions: 1
Published: about 5 years ago

10.1186/s13148-021-01042-4

Pre-adolescence DNA methylation is associated with BMI status change from pre- to post-adolescence
Cited by: 3
Author(s): Jiajing Wang, Hongmei Zhang, Faisal I. Rezwan, Caroline L Relton, Syed Hasan Arshad, John W. Holloway
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-51475-4

DNA methylation-based biological age, genome-wide average DNA methylation, and conventional breast cancer risk factors
Cited by: 15
Author(s): Minyuan Chen, Ee Ming Wong, Tuong L. Nguyen, Gillian S. Dite, Jennifer Stone, Pierre Antoine Dugué, Graham G. Giles, Melissa C. Southey, Roger L. Milne, John L. Hopper, Shuai Li
Software Mentions: 1
Published: about 5 years ago

10.1186/s13148-020-00852-2

Cord blood DNA methylation reflects cord blood C-reactive protein levels but not maternal levels: a longitudinal study and meta-analysis
Cited by: 8
Author(s): Edwina Yeung, Weihua Guan, Xuehuo Zeng, Lucas A. Salas, Sunni Mumford, Paula de Prado-Bert, Evelien R. van Meel, Anni Malmberg, Jordi Sunyer, Liesbeth Duijts, Janine F. Felix, Darina Czamara, Esa Hämäläinen, Elisabeth B. Binder, Katri Räikkönen, Jari Lahti, Stephanie J. London, Robert M. Silver, Enrique F. Schisterman
Software Mentions: 1
Published: over 4 years ago

10.1186/s13148-020-00868-8

Effect of short-term prescription opioids on DNA methylation of the OPRM1 promoter
Cited by: 27
Author(s): José Vladimir Sandoval-Sierra, Francisco I. Salgado García, Jeffrey H. Brooks, Karen J. Derefinko, Khyobeni Mozhui
Software Mentions: 1
Published: over 4 years ago

10.1186/s13148-017-0418-3

Maternal eating disorders affect offspring cord blood DNA methylation: a prospective study
Cited by: 15
Author(s): Nabila Kazmi, Tom R. Gaunt, Caroline L Relton, Nadia Micali
Software Mentions: 1
Published: about 7 years ago

10.1186/s13148-021-01080-y

Characteristics of epigenetic aging across gestational and perinatal tissues
Cited by: 21
Author(s): Linda Dieckmann, Marius Lahti‐Pulkkinen, Tuomas Kvist, Jari Lahti, Peter DeWitt, Cristiana Cruceanu, Hannele Laivuori, Sara Sammallahti, Pia Villa, Sanna Suomalainen‐König, Johan G. Eriksson, Eero Kajantie, Katri Räikkönen, Elisabeth B. Binder, Darina Czamara
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22168778

Naturalistic Stress Hormone Levels Drive Cumulative Epigenomic Changes along the Cellular Lifespan
Cited by: 6
Author(s): Anthony S. Zannas
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-68325-3

Genome-wide blood DNA methylation analysis in patients with delayed cerebral ischemia after subarachnoid hemorrhage
Cited by: 12
Author(s): Bong Jun Kim, Youngmi Kim, Dong Hyuk Youn, Jeong Jin Park, Jong Kook Rhim, Heung Cheol Kim, Keunsoo Kang, Jin Pyeong Jeon
Software Mentions: 1
Published: over 4 years ago

10.1186/s13148-016-0177-6

Epigenetic associations of type 2 diabetes and BMI in an Arab population
Cited by: 104
Author(s): Wadha A. Al Muftah, Mashael Al-Shafai, Shaza B. Zaghlool, Alessia Visconti, Pei-Chien Tsai, Pankaj Kumar, Tim D. Spector, Jordana T. Bell, Mario Falchi, Karsten Suhre
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13148-021-01155-w

Longitudinal analysis of individual cfDNA methylome patterns in metastatic prostate cancer
Cited by: 12
Author(s): Romina Silva, Bruce Moran, Anne‐Marie Baird, Colm J. O’Rourke, Stephen Finn, Ray McDermott, William Watson, William M. Gallagher, Donal J. Brennan, Antoinette S. Perry
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-020-69787-1

Correlative study of epigenetic regulation of tumor microenvironment in spindle cell melanomas and cutaneous malignant peripheral nerve sheath tumors
Cited by: 5
Author(s): Theodore Vougiouklakis, Phyu P. Aung, Varshini Vasudevaraja, Víctor G. Prieto, Carlos A. Torres‐Cabala, Erik P. Sulman, Matija Snuderl, George Jour
Software Mentions: 1
Published: over 4 years ago

10.1007/s00401-017-1713-y

DNA methylation age-acceleration is associated with disease duration and age at onset in C9orf72 patients
Cited by: 42
Author(s): Ming Zhang, Maria Carmela Tartaglia, Danielle Moreno, Christine Sato, Paul M. McKeever, Anna Weichert, Julia Keith, Janice Robertson, Lorne Zinman, Ekaterina Rogaeva
Software Mentions: 1
Published: over 7 years ago

10.1186/s13148-016-0171-z

DNA methylation in a Scottish family multiply affected by bipolar disorder and major depressive disorder
Cited by: 24
Author(s): Richard M Martin, Andrea Christoforou, Daniel L. McCartney, Stewart W. Morris, Nicholas A Kennedy, Peter Morten, Susan M. Anderson, Helen S. Torrance, Alix Macdonald, Jessika E. Sussmann, Heather C. Whalley, Douglas Blackwood, Andrew M. McIntosh, David J. Porteous, Kathryn Evans
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13148-019-0717-y

Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data
Cited by: 99
Author(s): Kristina Gervin, Lucas A. Salas, Kelly M. Bakulski, Menno C. van Zelm, Devin C. Koestler, John K. Wiencke, Liesbeth Duijts, Henriëtte A. Moll, Karl T. Kelsey, Michæl S. Kobor, Robert Lyle, Brock C. Christensen, Janine F. Felix, Meaghan J. Jones
Software Mentions: 1
Published: about 5 years ago

10.1186/s13148-021-01128-z

DNA methylation under the major depression pathway predicts pediatric quality of life four-month post-pediatric mild traumatic brain injury
Cited by: 3
Author(s): Kuaikuai Duan, Andrew R. Mayer, Nicholas A. Shaff, Jiayu Chen, Dongdong Lin, Vince D. Calhoun, Dawn M. Jensen, Jingyu Liu
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms221910417

Epigenetic Biomarkers of Transition from Metabolically Healthy Obesity to Metabolically Unhealthy Obesity Phenotype: A Prospective Study
Cited by: 8
Author(s): Carolina Gutiérrez-Repiso, Teresa María Linares-Pineda, A. González-Jiménez, Francisca Aguilar-Lineros, Sergio Valdés, Federico Soriguer, Gemma Rojo‐Martínez, Francisco J. Tinahones, Sonsoles Morcillo
Software Mentions: 1
Published: about 3 years ago

10.1186/s13148-019-0783-1

DNA methylation profiles in chronic lymphocytic leukemia patients treated with chemoimmunotherapy
Cited by: 11
Author(s): Maria Tsagiopoulou, Nikos Papakonstantinou, Theodoros Moysiadis, Larry Mansouri, Viktor Ljungström, Martí Duran-Ferrer, Andigoni Malousi, Ana C. Queirós, Karla Plevová, Sujata Bhoi, Panagoula Κollia, David Oscier, Αchilles Anagnostopoulos, Livio Trentin, Matthias Ritgen, Šárka Pospı́šilová, Niki Stavroyianni, Paolo Ghia, José Ignacio Martin-Subero, Christiane Pott, Richard Rosenquist, Kostas Stamatopoulos
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-91642-0

Cord blood DNA methylation modifications in infants are associated with white matter microstructure in the context of prenatal maternal depression and anxiety
Cited by: 3
Author(s): Douglas C. Dean, Andy Madrid, Elizabeth M. Planalp, Jason F. Moody, Ligia A. Papale, Karla M. Knobel, Elizabeth K. Wood, Ryan M. McAdams, Christopher L. Coe, H. Hill Goldsmith, Richard J. Davidson, Reid S. Alisch, Pamela J. Kling
Software Mentions: 1
Published: over 3 years ago

10.1186/s13148-017-0384-9

Cord blood DNA methylation and adiposity measures in early and mid-childhood
Cited by: 17
Author(s): Jacob K. Kresovich, Yinan Zheng, Andrés Cárdenas, Brian T. Joyce, Sheryl L. Rifas‐Shiman, Emily Oken, Matthew W. Gillman, Marie‐France Hivert, Andrea A. Baccarelli, Lifang Hou
Software Mentions: 1
Published: over 7 years ago

10.1038/s41392-019-0090-5

DNA methylation markers in the diagnosis and prognosis of common leukemias
Cited by: 20
Author(s): Hua Jiang, Zhiying Ou, Yingyi He, Mei Yu, Shaohua Wu, Gen Li, Jie Zhu, Ru Zhang, Jiayi Wang, Lianghong Zheng, Xiaohong Zhang, Wen-Ge Hao, Liang He, Xiaoqiong Gu, Qingli Quan, Edward Zhang, Hongyu Luo, Wei Wei, Zhihuan Li, Guangxi Zang, Charlotte Zhang, Tina Poon, Dongke Zhang, Ian Ziyar, Run-Ze Zhang, Oulan Li, Linhai Cheng, T Shimizu, Xinping Cui, Jian‐Kang Zhu, Xin Sun, Kang Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13148-018-0518-8

Epigenetic signature of preterm birth in adult twins
Cited by: 16
Author(s): Qihua Tan, Shuxia Li, Morten Frost, Marianne Nygaard, Mette Soerensen, Martin Jakob Larsen, Kaare Christensen, Lene Christiansen
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.11675

MIEN1 is tightly regulated by SINE Alu methylation in its promoter
Cited by: 11
Author(s): Smrithi Rajendiran, Lee D. Gibbs, Timothy Van Treuren, David Klinkebiel, Jamboor K. Vishwanatha
Software Mentions: 1
Published: about 8 years ago

10.1016/j.celrep.2016.10.059

eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data
Cited by: 96
Author(s): Charles E. Breeze, Dirk S. Paul, Jenny van Dongen, Lee M. Butcher, J. C. Ambrose, James E. Barrett, Robert Lowe, Vardhman K. Rakyan, Valentina Iotchkova, Mattia Frontini, Kate Downes, Willem H. Ouwehand, Jonathan Laperle, Pierre-Étienne Jacques, Guillaume Bourque, Anke Bergmann, Reiner Siebert, Edo Vellenga, Sadia Saeed, Filomena Matarese, Joost H.A. Martens, Hendrik G. Stunnenberg, Andrew E. Teschendorff, Javier Herrero, Ewan Birney, Ian Dunham, Stephan Beck
Software Mentions: 1
Published: about 8 years ago

10.3390/cancers11122031

Aberrant DNA Methylation Predicts Melanoma-Specific Survival in Patients with Acral Melanoma
Cited by: 12
Author(s): Dinesh Pradhan, George Jour, Denái R. Milton, Varshini Vasudevaraja, Michael T. Tetzlaff, Priyadharsini Nagarajan, Jonathan L. Curry, Doina Ivan, Lihong Long, Yingwen Ding, Ravesanker Ezhilarasan, Erik P. Sulman, Adi Diab, Wen Jen Hwu, Víctor G. Prieto, Carlos A. Torres‐Cabala, Phyu P. Aung
Software Mentions: 1
Published: almost 5 years ago

10.18632/aging.203126

DNA-methylation-based telomere length estimator: comparisons with measurements from flow FISH and qPCR
Cited by: 6
Author(s): Emily E Pearce, Steve Horvath, Shilpa Katta, Casey Dagnall, Geraldine Aubert, Belynda Hicks, Stephen R. Spellman, Hormuzd A. Katki, Sharon A. Savage, Rotana Alsaggaf, Shahinaz M. Gadalla
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers11111687

Fibroblasts in Nodular Sclerosing Classical Hodgkin Lymphoma Are Defined by a Specific Phenotype and Protect Tumor Cells from Brentuximab-Vedotin Induced Injury
Cited by: 11
Author(s): Katrin Bankov, Claudia Döring, Adam Ustaszewski, Maciej Giefing, Marco Herling, Chiara Cencioni, Francesco Spallotta, Carlo Gaetano, Ralf Küppers, Martin‐Leo Hansmann, Sven Hartmann
Software Mentions: 1
Published: about 5 years ago

10.1038/s41398-019-0446-1

Pilot study of DNA methylation, molecular aging markers and measures of health and well-being in aging
Cited by: 20
Author(s): Chirag M. Vyas, Aditi Hazra, Shun‐Chiao Chang, Weiliang Qiu, Charles F. Reynolds, David Mischoulon, Grace Chang, JoAnn E. Manson, Immaculata De Vivo, Olivia I. Okereke
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12102964

Immunohistochemically Characterized Intratumoral Heterogeneity Is a Prognostic Marker in Human Glioblastoma
Cited by: 10
Author(s): Friederike Liesche‐Starnecker, Karoline Mayer, Florian Kofler, Sandra Baur, Friederike Schmidt‐Graf, Johanna Kempter, Georg Prokop, Nicole Pfarr, Wenqi Wu, Jens Gempt, Stephanie E. Combs, Claus Zimmer, Benedikt Wiestler, Jürgen Schlegel
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0147519

Adjustment of Cell-Type Composition Minimizes Systematic Bias in Blood DNA Methylation Profiles Derived by DNA Collection Protocols
Cited by: 21
Author(s): Yuh Shiwa, Tsuyoshi Hachiya, Ryo Furukawa, Kanako Ono, Hisaaki Kudo, Jun Hata, Atsushi Hozawa, Motoki Iwasaki, Koichi Matsuda, Naoko Minegishi, Mamoru Satoh, Kozo Tanno, Taiki Yamaji, Kenji Wakai, Jiro Hitomi, Yutaka Kiyohara, Michiaki Kubo, Hideo Tanaka, Shoichiro Tsugane, Masayuki Yamamoto, Kenji Sobue, Atsushi Shimizu
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.9327

Differential DNA methylation patterns of polycystic ovarian syndrome in whole blood of Chinese women
Cited by: 29
Author(s): Shuxia Li, Dan Zhu, Hongmei Duan, Anran Ren, Dorte Glintborg, Marianne Andersen, Vibe Skov, Mads Thomassen, Torben A. Kruse, Qihua Tan
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0118202

Accurate Measurement of 5-Methylcytosine and 5-Hydroxymethylcytosine in Human Cerebellum DNA by Oxidative Bisulfite on an Array (OxBS-Array)
Cited by: 50
Author(s): Sarah Field, Dario Beraldi, Martin Bachman, Sabrina Stewart, Stephan Beck, Shankar Balasubramanian
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0208915

Critical evaluation of linear regression models for cell-subtype specific methylation signal from mixed blood cell DNA
Cited by: 6
Author(s): Daniel W. Kennedy, Nicole White, Miles C. Benton, Andrew Fox, Rodney J. Scott, Lyn R. Griffiths, Kerrie Mengersen
Software Mentions: 1
Published: almost 6 years ago

10.18632/aging.203399

Epigenetic age prediction in semen – marker selection and model development
Cited by: 16
Author(s): Aleksandra Pisarek, Ewelina Pośpiech, Antonia Heidegger, Catarina Xavier, Anna Papież, Danuta Piniewska-Róg, Vivian Kalamara, Ramya Potabattula, M. Bochenek, Marta Sikora-Polaczek, Aneta Macur, Anna Woźniak, J Janeczko, Christopher Phillips, Thomas Haaf, Joanna Polańska, Walther Parson, Manfred Kayser, Wojciech Branicki
Software Mentions: 1
Published: over 3 years ago

10.1038/s41398-021-01609-y

SLC25A24 gene methylation and gray matter volume in females with and without conduct disorder: an exploratory epigenetic neuroimaging study
Cited by: 3
Author(s): Elizabeth Farrow, Andreas G. Chiocchetti, Jack C. Rogers, Ruth Pauli, Nora Maria Raschle, Karen González-Madruga, Areti Smaragdi, Anne Martinelli, Gregor Kohls, Christina Stadler, Kerstin Konrad, Graeme Fairchild, Christine M. Freitag, Magdalena Chechlacz, Stéphane A. De Brito
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0135022

Intra-Monozygotic Twin Pair Discordance and Longitudinal Variation of Whole-Genome Scale DNA Methylation in Adults
Cited by: 15
Author(s): Na Zhang, Song Zhao, Suhua Zhang, Jinzhong Chen, Daru Lu, Min Shen, Chengtao Li
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0165436

Methylation of Breast Cancer Predisposition Genes in Early-Onset Breast Cancer: Australian Breast Cancer Family Registry
Cited by: 13
Author(s): Cameron M. Scott, Ji Hoon Eric Joo, Neil O’Callaghan, Daniel D. Buchanan, Mark Clendenning, Graham G. Giles, John L. Hopper, Ee Ming Wong, Melissa C. Southey
Software Mentions: 1
Published: almost 8 years ago

10.1007/s12035-017-0844-4

Dynorphin and κ-Opioid Receptor Dysregulation in the Dopaminergic Reward System of Human Alcoholics
Cited by: 25
Author(s): Igor Bazov, Daniil Sarkisyan, О. Кононенко, Hiroyuki Watanabe, Tatiana Yakovleva, Anita C. Hansson, Wolfgang Sommer, Rainer Spanagel, Georgy Bakalkin
Software Mentions: 1
Published: almost 7 years ago

10.1002/cam4.3583

A phase 1 study of combined guadecitabine and cisplatin in platinum refractory germ cell cancer
Cited by: 20
Author(s): Costantine Albany, Zeeshan Fazal, Ratnakar Singh, Emmanuel Bikorimana, Nabil Adra, Nasser H. Hanna, Lawrence H. Einhorn, Susan M. Perkins, George E. Sandusky, Brock C. Christensen, Harold Keer, Fang Fang, Kenneth P. Nephew, Michael J. Spinella
Software Mentions: 1
Published: about 4 years ago

10.1155/2021/1466255

Bioinformatics Analysis of GFAP as a Potential Key Regulator in Different Immune Phenotypes of Prostate Cancer
Cited by: 1
Author(s): Wencheng Yao, Xiang Li, Zhang Jia, Zhuoshi Li, Zhibo Jin, Jun Wang, Bo Yuan, Jinjian Yang
Software Mentions: 1
Published: over 3 years ago

10.1038/s10038-020-0780-4

Genetic and epigenetic profiling of BRCA1/2 in ovarian tumors reveals additive diagnostic yield and evidence of a genomic BRCA1/2 DNA methylation signature
Cited by: 10
Author(s): Erfan Aref‐Eshghi, Jacob McGee, Victor P. Pedro, Jennifer Kerkhof, Alan Stuart, Peter Ainsworth, Hanxin Lin, Michael Volodarsky, C. Meg McLachlin, Bekim Sadiković
Software Mentions: 1
Published: over 4 years ago

10.1186/s40364-019-0161-3

Longitudinal study of leukocyte DNA methylation and biomarkers for cancer risk in older adults
Cited by: 13
Author(s): Alexandra H. Bartlett, Jane W. Liang, José Vladimir Sandoval-Sierra, Jay H. Fowke, Eleanor M. Simonsick, Karen C. Johnson, Khyobeni Mozhui
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.203022

Combined healthy lifestyle score and risk of epigenetic aging: a discordant monozygotic twin study
Cited by: 8
Author(s): Hexiang Peng, Wenjing Gao, Weihua Cao, Jun Lv, Yu Chen, Tao Wu, Shengfeng Wang, Zengchang Pang, Min Yu, Hua Wang, Xuesong Wu, Liming Li
Software Mentions: 1
Published: over 3 years ago

10.3390/ijerph17155493

Genome-Wide DNA Methylation Profiles in Community Members Exposed to the World Trade Center Disaster
Cited by: 10
Author(s): Alan A. Arslan, Stephanie Tuminello, Lei Yang, Yian Zhang, Nedim Durmuş, Matija Snuderl, Adriana Heguy, Anne Zeleniuch‐Jacquotte, Yongzhao Shao, Joan Reibman
Software Mentions: 1
Published: over 4 years ago

10.3390/biology10080802

Impact of the Epigenetically Regulated Hoxa-5 Gene in Neural Differentiation from Human Adipose-Derived Stem Cells
Cited by: 2
Author(s): Rosa Elena Huerta Hernández, Cristina Jiménez-Luna, Raúl Ortíz, Fernando Setién, Miguel López, Gloria Perazzoli, Manel Esteller, María Berdasco, José Prados, Consolación Melguizo
Software Mentions: 1
Published: over 3 years ago

10.1136/bmjopen-2017-016708

Are objective measures of physical capability related to accelerated epigenetic age? Findings from a British birth cohort
Cited by: 35
Author(s): Andrew Simpkin, Rachel Cooper, Laura D Howe, Caroline L Relton, George Davey Smith, Andrew E. Teschendorff, Martin Widschwendter, Andrew Wong, Diana Kuh, Rebecca Hardy
Software Mentions: 1
Published: about 7 years ago

10.18632/aging.101976

Rapamycin retards epigenetic ageing of keratinocytes independently of its effects on replicative senescence, proliferation and differentiation
Cited by: 35
Author(s): Steve Horvath, Ake T. Lu, Howard A. Cohen, Ken Raj
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jsbmb.2016.03.005

25-Hydroxyvitamin D in pregnancy and genome wide cord blood DNA methylation in two pregnancy cohorts (MoBa and ALSPAC)
Cited by: 24
Author(s): Matthew Suderman, Lars C. Stene, Jon Bohlin, Christian M. Page, Kristin Holvik, Christine Louise Parr, Maria C Magnus, Siri Eldevik Håberg, Bonnie R. Joubert, Michael C. Wu, Stephanie J. London, Caroline L Relton, Wenche Nystad
Software Mentions: 1
Published: over 8 years ago

10.1186/s13104-019-4633-1

A pilot prospective study of sleep patterns and DNA methylation-characterized epigenetic aging in young adults
Cited by: 18
Author(s): Mary A. Carskadon, Kenneth R. Chappell, David H. Barker, Anne C. Hart, Kayla Dwyer, Caroline Gredvig-Ardito, Caitlyn Starr, John E. McGeary
Software Mentions: 1
Published: about 5 years ago

10.1186/s13104-015-1286-6

Effect of maternal gestational weight gain on offspring DNA methylation: a follow-up to the ALSPAC cohort study
Cited by: 12
Author(s): Jon Bohlin, Bettina Kulle Andreassen, Bonnie R. Joubert, Maria C Magnus, Michael C. Wu, Christine L. Parr, Siri Eldevik Håberg, Per Magnus, Sarah E. Reese, Camilla Stoltenberg, Stephanie J. London, Wenche Nystad
Software Mentions: 1
Published: over 9 years ago

10.1186/s13059-018-1608-9

Circadian oscillations of cytosine modification in humans contribute to epigenetic variability, aging, and complex disease
Cited by: 28
Author(s): Gabriel Oh, Karolis Koncevičius, Sasha Ebrahimi, Matthew Carlucci, Daniel E. Groot, Akhil Nair, Aiping Zhang, Algimantas Kriščiūnas, Edward Saehong Oh, Viviane Labrie, Albert H.C. Wong, Juozas Gordevičius, Pengxiang Jia, Miki Susic, Art Petronis
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13059-018-1397-1

Ageing-associated DNA methylation dynamics are a molecular readout of lifespan variation among mammalian species
Cited by: 56
Author(s): Robert Lowe, Carl Barton, Christopher A. Jenkins, Christina Ernst, Oliver P. Forman, Denise S. Fernandez‐Twinn, Christoph Bock, Stephen J. Rossiter, Chris G. Faulkes, Susan E. Ozanne, Lutz Walter, Duncan T. Odom, Cathryn S. Mellersh, Vardhman K. Rakyan
Software Mentions: 1
Published: almost 7 years ago

10.1186/gb-2014-15-2-r31

Accounting for cellular heterogeneity is critical in epigenome-wide association studies
Cited by: 854
Author(s): Andrew E. Jaffe, Rafael A. Irizarry
Software Mentions: 1
Published: almost 11 years ago

10.18632/aging.101588

Epigenetic ageing is distinct from senescence-mediated ageing and is not prevented by telomerase expression
Cited by: 62
Author(s): Sylwia Kabacik, Steve Horvath, Howard A. Cohen, Kenneth Raj
Software Mentions: 1
Published: about 6 years ago

10.1186/s13073-021-00875-1

Persistent variations of blood DNA methylation associated with treatment exposures and risk for cardiometabolic outcomes in long-term survivors of childhood cancer in the St. Jude Lifetime Cohort
Cited by: 15
Author(s): Nan Song, Chia‐Wei Hsu, Haitao Pan, Yinan Zheng, Lifang Hou, Jin Ah Sim, Zhenghong Li, Heather L. Mulder, John Easton, Emily Walker, Geoffrey Neale, Carmen L. Wilson, Kirsten K. Ness, Kevin R. Krull, Deo Kumar Srivastava, Yutaka Yasui, Jinghui Zhang, Melissa M. Hudson, Leslie L. Robison, I‐Chan Huang, Zhaoming Wang
Software Mentions: 1
Published: over 3 years ago

10.3390/genes11030311

The Effect of Tobacco Smoking Differs across Indices of DNA Methylation-Based Aging in an African American Sample: DNA Methylation-Based Indices of Smoking Capture These Effects
Cited by: 21
Author(s): Man‐Kit Lei, Frederick X. Gibbons, Ronald L. Simons, Robert A. Philibert, Steven R. H. Beach
Software Mentions: 1
Published: over 4 years ago

10.3390/genes5020347

Epigenetic Variation in Monozygotic Twins: A Genome-Wide Analysis of DNA Methylation in Buccal Cells
Cited by: 49
Author(s): Jenny van Dongen, Erik A. Ehli, Roderick C. Slieker, Meike Bartels, Zachary M. Weber, Gareth E. Davies, P. Eline Slagboom, Bastiaan T. Heijmans, Dorret I. Boomsma
Software Mentions: 1
Published: over 10 years ago

10.3389/fpubh.2020.00172

Analysis of Epigenetic Age Predictors in Pain-Related Conditions
Cited by: 7
Author(s): Katarzyna Malgorzata Kwiatkowska, Maria Giulia Bacalini, Claudia Sala, Helena Hideko Seguchi Kaziyama, Daniel Ciampi de Andrade, Rossana Terlizzi, Giulia Giannini, Sabina Cevoli, Giulia Pierangeli, Paolo Garagnani, Chiara Pirazzini
Software Mentions: 1
Published: over 4 years ago

10.3389/fpsyt.2021.734606

Methylation Analysis in Monozygotic Twins With Treatment-Resistant Schizophrenia and Discordant Responses to Clozapine
Cited by: 4
Author(s): Masataka Kikuchi, Takahiro Nakazawa, Makoto Kinoshita, Hidenaga Yamamori, Yuka Yasuda, Michiko Fujimoto, Ryota Hashimoto, Shusuke Numata
Software Mentions: 1
Published: about 3 years ago

10.3389/fpsyt.2018.00594

Opposite Epigenetic Associations With Alcohol Use and Exercise Intervention
Cited by: 15
Author(s): Jiayu Chen, Kent E. Hutchison, Angela D. Bryan, Francesca M. Filbey, Vince D. Calhoun, Eric D. Claus, Dongdong Lin, Jing Sui, Yuhui Du, Jingyu Liu
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms20235828

Altered Genome-Wide DNA Methylation in Peripheral Blood of South African Women with Gestational Diabetes Mellitus
Cited by: 20
Author(s): Stephanie Dias, Sheryl Adam, Paul Rheeder, Johan Louw, Carmen Pheiffer
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2019.01036

Hypoxia Can Induce Migration of Glioblastoma Cells Through a Methylation-Dependent Control of ODZ1 Gene Expression
Cited by: 12
Author(s): Carlos Velásquez, Sheila Mansouri, Olga Gutiérrez, Yasin Mamatjan, Pilar Mollinedo, Shirin Karimi, Olivia Singh, Nuria Terán, Juan Martino, Gelareh Zadeh, José L. Fernández-Luna
Software Mentions: 1
Published: about 5 years ago

10.1186/s12978-017-0377-3

Clinical review of 24–35 year olds conceived with and without in vitro fertilization: study protocol
Cited by: 14
Author(s): Sharon Lewis, Joanne Kennedy, David Burgner, Robert I McLachlan, Sarath Ranganathan, Karin Hammarberg, Richard Saffery, David J. Amor, Michael Cheung, Lex W. Doyle, Markus Juonala, Susan Donath, John McBain, Jane Halliday
Software Mentions: 1
Published: about 7 years ago

10.1530/REP-16-0014

Recent progress towards understanding the role of DNA methylation in human placental development
Cited by: 61
Author(s): Tina Bianco‐Miotto, Benjamin Mayne, Sam Buckberry, James Breen, Carlos M. Rodríguez López, Claire T. Roberts
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms21010329

Mediation Analysis Supports a Causal Relationship between Maternal Hyperglycemia and Placental DNA Methylation Variations at the Leptin Gene Locus and Cord Blood Leptin Levels
Cited by: 18
Author(s): Valérie Gagné-Ouellet, Édith Breton, Kathrine Thibeault, Carol-Ann Fortin, Andrés Cárdenas, Renée Guérin, Patrice Perron, Marie‐France Hivert, Luigi Bouchard
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21051818

DNA Methylation Profiling for Diagnosing Undifferentiated Sarcoma with Capicua Transcriptional Receptor (CIC) Alterations
Cited by: 21
Author(s): Evelina Miele, Rita De Vito, Andrea Ciolfi, Lucia Pedace, Ida Russo, Maria Debora De Pasquale, Angela Di Giannatale, Alessandro Crocoli, Biagio De Angelis, Marco Tartaglia, Rita Alaggio, Giuseppe Maria Milano
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2019.00391

Role of DNA Methylation Profile in Diagnosing Astroblastoma: A Case Report and Literature Review
Cited by: 23
Author(s): Giuseppe Petruzzellis, Iside Alessi, Giovanna Stefania Colafati, Francesca Diomedi-Camassei, Andrea Ciolfi, Lucia Pedace, Antonella Cacchione, Andrea Carai, Marco Tartaglia, Angela Mastronuzzi, Evelina Miele
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.00816

In Epigenomic Studies, Including Cell-Type Adjustments in Regression Models Can Introduce Multicollinearity, Resulting in Apparent Reversal of Direction of Association
Cited by: 20
Author(s): Sheila J. Barton, Phillip E. Melton, Philip Titcombe, Robert Murray, Sebastian Rauschert, Karen A. Lillycrop, Rae‐Chi Huang, Joanna D. Holbrook, Keith M. Godfrey
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2021.665769

Distinct Associations of BMI and Fatty Acids With DNA Methylation in Fasting and Postprandial States in Men
Cited by: 7
Author(s): Azucena Pescador-Tapia, Guillermo A Silva-Martínez, Nicolás Fragoso-Bargas, Dalia Rodríguez‐Ríos, Manel Esteller, Sebastian Morán, Silvio Zaina, Gertrud Lund
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.101955

Epigenetic clock analysis of human fibroblasts in vitro: effects of hypoxia, donor age, and expression of hTERT and SV40 largeT
Cited by: 16
Author(s): Mieko Matsuyama, David Jasen WuWong, Steve Horvath, Shigemi Matsuyama
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-15-51

Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array
Cited by: 122
Author(s): Haroon Naeem, Nicholas C. Wong, Zac Chatterton, Matthew K.H. Hong, John Pedersen, Niall M. Corcoran, Christopher M. Hovens, Geoff Macintyre
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-020-07169-7

DNA methylation in infants with low and high body fatness
Cited by: 1
Author(s): Pontus Henriksson, Antonio Lentini, Signe Altmäe, David Brodin, Patrick Müller, Elisabet Forsum, Colm E. Nestor, Marie Löf
Software Mentions: 1
Published: about 4 years ago

10.1186/s13072-019-0275-8

Ezh2-dCas9 and KRAB-dCas9 enable engineering of epigenetic memory in a context-dependent manner
Cited by: 97
Author(s): Henriette O’Geen, Sofie L. Bates, Sakereh S. Carter, Karly A. Nisson, Julian Halmai, Kyle D. Fink, Suhn Kyong Rhie, P Farnham, David J. Segal
Software Mentions: 1
Published: over 5 years ago

10.1186/s13072-021-00407-6

Ageing-associated changes in DNA methylation in X and Y chromosomes
Cited by: 10
Author(s): Laura Kananen, Saara Marttila
Software Mentions: 1
Published: over 3 years ago

10.1038/srep34460

Identification of DNA methylation changes associated with disease progression in subchondral bone with site-matched cartilage in knee osteoarthritis
Cited by: 31
Author(s): Yanfei Zhang, Naoshi Fukui, M. Yahata, Yozo Katsuragawa, Tazuko Tashiro, Shiro Ikegawa, Ming Ta Michael Lee
Software Mentions: 1
Published: about 8 years ago

10.1038/srep46311

Genome-Wide Methylation Analysis Identifies Specific Epigenetic Marks In Severely Obese Children
Cited by: 50
Author(s): Delphine Fradin, Pierre‐Yves Boëlle, Marie-Pierre Belot, Fanny Lachaux, Jörg Tost, Céline Besse, Jean‐François Deleuze, Gianpaolo De Filippo, Pierre Bougnères
Software Mentions: 1
Published: over 7 years ago

10.1038/srep46330

DNA methylation landscape of ocular tissue relative to matched peripheral blood
Cited by: 15
Author(s): Alex W. Hewitt, Vania Januar, Alexandra Sexton-Oates, Jihoon E. Joo, Maria Franchina, Jie Jin Wang, Helena Liang, Jamie E Craig, Richard Saffery
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms22020733

Differential DNA Methylation in Prostate Tumors from Puerto Rican Men
Cited by: 4
Author(s): Gilberto Ruiz-Deya, Jaime Matta, Jarline Encarnación-Medina, Carmen Ortiz-Sánchez, Julie Dutil, Ryan M. Putney, Anders Berglund, Jasreman Dhillon, Young‐Chul Kim, Jong Y. Park
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13072-016-0107-z

“Gap hunting” to characterize clustered probe signals in Illumina methylation array data
Cited by: 58
Author(s): Shan V. Andrews, Christine Ladd‐Acosta, Andrew P. Feinberg, Kasper D. Hansen, M. Daniele Fallin
Software Mentions: 1
Published: almost 8 years ago

Projects: bioconductor: minfi

Papers Mentioning minfi 506