Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: microbiome
https://packages.ecosyste.ms/registries/bioconductor.org/packages/microbiome
Microbiome Analytics
1 version
Latest release: 11 months ago
1 dependent package
97,288 downloads total
Papers Mentioning microbiome 114
10.3389/fmicb.2021.632947
Understanding Biofilm Formation in Ecotoxicological Assays With Natural and Anthropogenic ParticulatesCited by: 7
Author(s): Elena Gorokhova, Asa Motiei, Rehab El-Shehawy
Software Mentions: 4
Published: about 3 years ago
10.3389/fmicb.2019.03007
Core and Differentially Abundant Bacterial Taxa in the Rhizosphere of Field Grown Brassica napus Genotypes: Implications for Canola BreedingCited by: 37
Author(s): Zelalem M. Taye, Bobbi L. Helgason, Jennifer K. Bell, Charlotte E. Norris, Sally Vail, Stephen J. Robinson, Isobel A. P. Parkin, Melissa M. Arcand, Steven D. Mamet, Matthew G. Links, Tanner Dowhy, Steven D. Siciliano, Eric G. Lamb
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-019-54855-y
Microbiome differences in disease-resistant vs. susceptible Acropora corals subjected to disease challenge assaysCited by: 51
Author(s): Stephanie M. Rosales, Margaret W. Miller, Dana E. Williams, Nikki Traylor-Knowles, Benjamin Young, Xaymara M. Serrano
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41598-020-59955-8
Vaginal microbiota diverges in sows with low and high reproductive performance after porcine reproductive and respiratory syndrome vaccinationCited by: 14
Author(s): Letícia P Sanglard, Stephan Schmitz‐Esser, Kent Gray, Daniel Linhares, Carl J. Yeoman, Jack C. M. Dekkers, Megan C. Niederwerder, Nick V. L. Serão
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0237556
Evaluation of DNA extraction protocols from liquid-based cytology specimens for studying cervical microbiotaCited by: 4
Author(s): Takeo Shibata, Mayumi Nakagawa, Hannah N. Coleman, Sarah M. Owens, William W. Greenfield, Toshiyuki Sasagawa, Michael S. Robeson
Software Mentions: 4
Published: about 3 years ago
10.1080/01652176.2020.1745317
Effects of hypersensitivity disorders and environmental factors on the equine intestinal microbiotaCited by: 11
Author(s): Sarah Kaiser‐Thom, Markus Hilty, Vinzenz Gerber
Software Mentions: 4
Published: over 4 years ago
10.3390/nu13051617
Next Generation Probiotics for Neutralizing Obesogenic Effects: Taxa Culturing Searching StrategiesCited by: 17
Author(s): Ana López‐Moreno, Inmaculada Acuña, Alfonso Torres-Sánchez, Ángel Ruiz-Moreno, Klara Cerk, Ana Rivas, Antonio Suárez, Mercedes Monteoliva‐Sánchez, Margarita Aguilera
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0223128
Highly diverse anaerobe-predominant vaginal microbiota among HIV-infected pregnant women in ZambiaCited by: 22
Author(s): Joan T. Price, Bellington Vwalika, Marcia M. Hobbs, Julie A. Nelson, Elizabeth M. Stringer, Fei Zou, Katelyn J. Rittenhouse, Andrea Azcárate-Peril, Margaret P. Kasaro, Jeffrey S. A. Stringer
Software Mentions: 3
Published: almost 5 years ago
10.3389/fmicb.2020.593401
The Microbiome of Leonardo da Vinci’s Drawings: A Bio-Archive of Their HistoryCited by: 20
Author(s): Güadalupe Piñar, Maria Carla Sclocchi, Flavia Pinzari, Piero Colaizzi, Alexandra B. Graf, Maria Letizia Sebastiani, Katja Sterflinger
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0239664
Bacterial diversity and prevalence of antibiotic resistance genes in the oral microbiomeCited by: 36
Author(s): Viviane Almeida, J. Fraga De Azevedó, Helena Ferreira Leal, Artur T. L. Queiroz, Hermes Pedreira da Silva Filho, Joice Neves Reis
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0241748
Effect of antibiotic gut microbiota disruption on LPS-induced acute lung inflammationCited by: 15
Author(s): Max C. Jacobs, Jacqueline M. Lankelma, Nora S. Wolff, Floor Hugenholtz, Alex F. de Vos, Tom van der Poll, W. Joost Wiersinga
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pntd.0009034
Effects of larval rearing substrates on some life-table parameters of Lutzomyia longipalpis sand fliesCited by: 2
Author(s): Kelsilândia Aguiar Martins, Maria Helena de Athayde Meirelles, Tiago Feitosa Mota, Ibrahim Abbasi, Artur T. L. Queiroz, Cláudia Brodskyn, Patrícia Sampaio Tavares Veras, Deborah Bittencourt Mothé Fraga, Alon Warburg
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-018-36673-w
Whole rumen metagenome sequencing allows classifying and predicting feed efficiency and intake levels in cattleCited by: 71
Author(s): Beatriz Martínez Delgado, À. Bach, I. Guasch, Claudette Hajaj Gonzalez, G. Elcoso, J.E. Pryce, Óscar González-Recio
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.675
Unexpected cross-species contamination in genome sequencing projectsCited by: 124
Author(s): Samier Merchant, Derrick E. Wood, Steven L. Salzberg
Software Mentions: 2
Published: almost 10 years ago