bioconductor: metagenomeSeq | Projects

10.3389/fmicb.2019.00826

Identifying Gut Microbiota Associated With Colorectal Cancer Using a Zero-Inflated Lognormal Model
Cited by: 98
Author(s): Dongmei Ai, Hongfei Pan, Xiaoxin Li, Yingxin Gao, Gang Liu, Xia Li
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2020.541972

Metagenomic Characterization of the Microbiome and Resistome of Retail Ground Beef Products
Cited by: 11
Author(s): Enrique Doster, K. Thomas, Margaret D. Weinroth, Jennifer Parker, K.K. Crone, Terrance M. Arthur, J. W. Schmidt, T. L. Wheeler, K. E. Belk, Paul S. Morley
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0178755

Unraveling the environmental and anthropogenic drivers of bacterial community changes in the Estuary of Bilbao and its tributaries
Cited by: 29
Author(s): Mikel Aguirre, David Abad, Aitor Albaina, Lauren Cralle, María Soledad Goñi-Urriza, Andone Estonba, Iratxe Zarraonaindia
Software Mentions: 3
Published: over 7 years ago

10.3390/microorganisms8091346

Growth Performance and Adaptability of European Sea Bass (Dicentrarchus labrax) Gut Microbiota to Alternative Diets Free of Fish Products
Cited by: 19
Author(s): David Pérez-Pascual, Jordi Estellé, Gilbert Dutto, Charles Rodde, Jean‐François Bernardet, Yann Marchand, Éric Duchaud, Cyrille Przybyla, Jean‐Marc Ghigo
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0090731

Seasonal Variation in Human Gut Microbiome Composition
Cited by: 225
Author(s): Emily Davenport, Orna Mizrahi-Man, Katelyn Michelini, Luis B. Barreiro, Carole Ober, Yoav Gilad
Software Mentions: 3
Published: over 10 years ago

10.1186/s42523-020-0020-4

Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets
Cited by: 29
Author(s): Francesca Romana Massacci, Mustapha Berri, Gaëtan Lemonnier, Elodie Guettier, Fany Blanc, Déborah Jardet, Marie Rossignol, Marie‐José Mercat, Joël Doré, Patricia Lepage, Claire Rogel–Gaillard, Jordi Estellé
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-29443-1

Oropharyngeal microbiome evaluation highlights Neisseria abundance in active celiac patients
Cited by: 32
Author(s): Laura Iaffaldano, Ilaria Granata, Chiara Pagliuca, Maria Valeria Esposito, Giorgio Casaburi, Giuliana Salerno, Roberta Colicchio, Marina Piccirillo, Carolina Ciacci, Giovanna Del Vecchio Blanco, Mario Rosario Guarracino, Paola Salvatore, Francesco Salvatore, Valeria D’Argenio, Lucia Sacchetti
Software Mentions: 3
Published: about 6 years ago

10.5713/ajas.19.0427

Effects of multi-strain probiotic supplementation on intestinal microbiota, tight junctions, and inflammation in young broiler chickens challenged with Salmonella enterica subsp. enterica
Cited by: 23
Author(s): Chi Huan Chang, Po-Yun Teng, Tzu-Tai Lee, Bin Yu
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-018-30932-6

Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions
Cited by: 110
Author(s): Daniel Crespo-Piazuelo, Jordi Estellé, Manuel Revilla, Lourdes Criado-Mesas, Yuliaxis Ramayo-Caldas, Cristina Óvilo, Ana Fernández, María Ballester, Josep María Folch
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.7488

Factors associated with the composition and diversity of the cervical microbiota of reproductive-age Black South African women: a retrospective cross-sectional study
Cited by: 17
Author(s): Harris Onywera, Anna‐Lise Williamson, Zizipho Z. A. Mbulawa, David Coetzee, Tracy L. Meiring
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2021.625539

Metagenome Sequencing Reveals the Midgut Microbiota Makeup of Culex pipiens quinquefasciatus and Its Possible Relationship With Insecticide Resistance
Cited by: 15
Author(s): Yiting Wang, Rui-xin Shen, Dan Xing, Chenpei Zhao, Heting Gao, Jiahong Wu, Ning Zhang, Heng-Duan Zhang, Yan Chen, Tongyan Zhao, Chunxiao Li
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.4170

The bacterial community structure and functional profile in the heavy metal contaminated paddy soils, surrounding a nonferrous smelter in South Korea
Cited by: 73
Author(s): Sherlyn Tipayno, Jaak Truu, Sandipan Samaddar, Marika Truu, Jens‐Konrad Preem, Kristjan Oopkaup, Mikk Espenberg, Poulami Chatterjee, Young Kee Kang, Kiyoon Kim, Tongmin Sa
Software Mentions: 3
Published: over 6 years ago

10.1038/s41396-017-0037-1

Oral microbiota of periodontal health and disease and their changes after nonsurgical periodontal therapy
Cited by: 165
Author(s): Casey Chen, Chris Hemme, Joan Beleno, Zhou Shi, Daliang Ning, Yujia Qin, Qichao Tu, Michael G. Jorgensen, Zhili He, Liyou Wu, Jizhong Zhou
Software Mentions: 3
Published: over 6 years ago

10.1186/s40168-016-0170-5

Two sampling methods yield distinct microbial signatures in the nasopharynges of asthmatic children
Cited by: 30
Author(s): Marcos Pérez‐Losada, Keith A. Crandall, Robert J. Freishtat
Software Mentions: 3
Published: about 8 years ago

10.1186/s12866-020-01759-x

The penile microbiota of Black South African men: relationship with human papillomavirus and HIV infection
Cited by: 23
Author(s): Harris Onywera, Anna‐Lise Williamson, Luca Cozzuto, Sarah Bonnin, Zizipho Z. A. Mbulawa, David Coetzee, Julia Ponomarenko, Tracy L. Meiring
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0189796

A confidence interval analysis of sampling effort, sequencing depth, and taxonomic resolution of fungal community ecology in the era of high-throughput sequencing
Cited by: 5
Author(s): Ryoko Oono
Software Mentions: 3
Published: over 6 years ago

10.1186/s12866-018-1232-6

Changes in gut microbiota and plasma inflammatory factors across the stages of colorectal tumorigenesis: a case-control study
Cited by: 52
Author(s): Yongzhen Zhang, Xin Yu, Enda Yu, Na Wang, Quan-Cai Cai, Qun Shuai, Feihu Yan, Lufang Jiang, Hexing Wang, Jianxiang Liu, Yue Chen, Zhao‐Shen Li, Qingwu Jiang
Software Mentions: 3
Published: about 6 years ago

10.3389/fbioe.2020.00205

Rapid Physicochemical Changes in Microplastic Induced by Biofilm Formation
Cited by: 82
Author(s): Eric McGivney, Linnea Cederholm, Andreas Barth, Minna Hakkarainen, Evelyne Hamacher-Barth, Martin Ogonowski, Elena Gorokhova
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0116704

Effects of Vendor and Genetic Background on the Composition of the Fecal Microbiota of Inbred Mice
Cited by: 241
Author(s): Aaron C. Ericsson, J. Wade Davis, William G. Spollen, Nathan J. Bivens, Scott A. Givan, Catherine E. Hagan, Mark A. McIntosh, Craig L. Franklin
Software Mentions: 3
Published: over 9 years ago

10.3389/fgene.2015.00348

The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics
Cited by: 223
Author(s): Alejandra Escobar‐Zepeda, Arturo Vera‐Ponce de León, Alejandro Sánchez-Flores
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0213975

Defining characteristics of genital health in South African adolescent girls and young women at high risk for HIV infection
Cited by: 34
Author(s): Smritee Dabee, Shaun Barnabas, Katie Lennard, Shameem Z. Jaumdally, Hoyam Gamieldien, Christina Balle, Anna‐Ursula Happel, Brandon D. Murugan, Anna‐Lise Williamson, Nonhlanhla N. Mkhize, Janan Dietrich, David A. Lewis, Francesca Chiodi, Thomas J. Hope, Robin J. Shattock, Glenda Gray, Linda‐Gail Bekker, Heather B. Jaspan, Jo‐Ann S. Passmore
Software Mentions: 2
Published: over 5 years ago

10.1128/AEM.00078-16

Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain
Cited by: 106
Author(s): Xiang Yang, Noelle Noyes, Enrique Doster, J. N. Martin, Lyndsey Linke, Roberta J. Magnuson, Hua Yang, Ifigenia Geornaras, D. R. Woerner, Kenneth L. Jones, Jaime Ruiz, Christina Boucher, Paul S. Morley, K. E. Belk
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0232418

Broilers divergently selected for digestibility differ for their digestive microbial ecosystems
Cited by: 5
Author(s): Marion Borey, Jordi Estellé, Aziza Caidi, Nicolas Bruneau, Jean‐Luc Coville, Christelle Hennequet-Antier, Sandrine Mignon-Grasteau, Fanny Calenge
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-018-0486-4

Early-life skin microbiota in hospitalized preterm and full-term infants
Cited by: 55
Author(s): Noelle Younge, Félix Araújo-Pérez, Debra Brandon, Patrick C. Seed
Software Mentions: 2
Published: over 6 years ago

10.1242/dmm.022905

Depletion of regulatory T cells leads to an exacerbation of delayed-type hypersensitivity arthritis in C57BL/6 mice that can be counteracted by IL-17 blockade
Cited by: 9
Author(s): Sara Marie Atkinson, Ute Hoffmann, Alf Hamann, Emil Bach, Niels Banhos Danneskiold‐Samsøe, Karsten Kristiansen, Kyle Serikawa, Brian Fox, Kim Kruse, Claus Haase, Søren Skov, Anneline Nansen
Software Mentions: 2
Published: over 8 years ago

10.1186/s40168-016-0183-0

Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection
Cited by: 41
Author(s): Alison Morris, Joseph N. Paulson, Hisham Talukder, Laura Tipton, Heather M. Kling, Lijia Cui, Adam Fitch, Mihai Pop, Karen A. Norris, Elodie Ghedin
Software Mentions: 2
Published: about 8 years ago

10.3390/ani11092550

Intestinal Microbiota, Anti-Inflammatory, and Anti-Oxidative Status of Broiler Chickens Fed Diets Containing Mushroom Waste Compost By-Products
Cited by: 6
Author(s): Wen Yang Chuang, Lin Li, Hsin Der Shih, Yih Min Shy, Si‐Chung Chang, Tzu-Tai Lee
Software Mentions: 2
Published: about 3 years ago

10.3389/fcell.2021.727286

Interaction Between Functionally Activate Endometrial Microbiota and Host Gene Regulation in Endometrial Cancer
Cited by: 6
Author(s): Peigen Chen, Yingchun Guo, Jia Lu, Jing Wan, Tiantian He, Cong Fang, Tingting Li
Software Mentions: 2
Published: almost 3 years ago

10.3390/biology10030219

Microbiome Markers of Pancreatic Cancer Based on Bacteria-Derived Extracellular Vesicles Acquired from Blood Samples: A Retrospective Propensity Score Matching Analysis
Cited by: 15
Author(s): Jae Ri Kim, Kyulhee Han, Youngmin Han, Nayeon Kang, Tae Seop Shin, Hyeon Ju Park, Hongbeom Kim, Wooil Kwon, Seungyeoun Lee, Yoon Keun Kim, Taesung Park
Software Mentions: 2
Published: over 3 years ago

10.1186/s12903-019-0747-z

Impact of polyols on Oral microbiome of Estonian schoolchildren
Cited by: 21
Author(s): Jelena Štšepetova, Jaak Truu, Riina Runnel, Rita Nõmmela, Mare Saag, Jana Olak, Hiie Nõlvak, Jens‐Konrad Preem, Kristjan Oopkaup, Kaarel Krjutškov, Eino Honkala, Sisko Honkala, Kauko K. Mäkinen, Pirkko‐Liisa Mäkinen, Tero Vahlberg, Joan Vermeiren, Douwina Bosscher, Peter de Cock, Reet Mändar
Software Mentions: 2
Published: over 5 years ago

10.1186/gb-2014-15-6-r76

Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition
Cited by: 202
Author(s): Mihai Pop, Alan W. Walker, Joseph N. Paulson, Brianna Lindsay, Martín Antonio, M. Anowar Hossain, Joseph Oundo, Boubou Tamboura, Volker Mai, Irina Astrovskaya, Héctor Corrada Bravo, Richard Rance, Mark Stares, Myron M. Levine, Sandra Panchalingam, Karen L. Kotloff, Usman N. Ikumapayi, Chinelo Ebruke, Mitchell Adeyemi, Dilruba Ahmed, Firoz Ahmed, Meer T. Alam, Ruhul Amin, Sabbir Siddiqui, John B. Ochieng, Emmanuel Ouma, Jane Juma, Euince Mailu, Richard Omore, J. Glenn Morris, Robert F. Breiman, Debasish Saha, Julian Parkhill, James P. Nataro, O. Colin Stine
Software Mentions: 2
Published: over 10 years ago

10.1186/s12866-017-1052-0

Comparative analysis of gut microbiota associated with body mass index in a large Korean cohort
Cited by: 103
Author(s): Yeojun Yun, Han Na Kim, Song E. Kim, Seong Heo, Yoosoo Chang, Seungho Ryu, Hocheol Shin, Hyung Lae Kim
Software Mentions: 2
Published: about 7 years ago

10.1093/geroni/igaa057.3076

Associations of Dietary Patterns With the Gut Microbiota in Older, Community-Dwelling Men
Cited by: 0
Author(s): James Shikany, Ryan T. Demmer, Abigail Johnson, Katie A. Meyer, Kristine E. Ensrud, Eric S. Orwoll, Deborah M. Kado, Lisa Langsetmo
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12859-016-1278-0

FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
Cited by: 74
Author(s): Jiwoong Kim, Min Soo Kim, Andrew Y. Koh, Yang Xie, Xiaowei Zhan
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep23027

Discovery of a Novel Seminal Fluid Microbiome and Influence of Estrogen Receptor Alpha Genetic Status
Cited by: 56
Author(s): Angela B. Javurek, William G. Spollen, Amber M. Mann Ali, Sarah A. Johnson, Dennis B. Lubahn, Nathan J. Bivens, Karen Bromert, Mark R. Ellersieck, Scott A. Givan, Cheryl S. Rosenfeld
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-06787-8

The Microbial Ecosystem Distinguishes Chronically Diseased Tissue from Adjacent Tissue in the Sigmoid Colon of Chronic, Recurrent Diverticulitis Patients
Cited by: 39
Author(s): Kathleen M. Schieffer, Kate Sabey, Justin Wright, David R. Toole, Rebecca Drucker, Vasily Tokarev, Leonard Harris, Sue Deiling, Melanie A. Eshelman, John P. Hegarty, Gregory S. Yochum, Walter A. Koltun, Regina Lamendella, David B. Stewart
Software Mentions: 2
Published: about 7 years ago

10.3390/nu13020636

Gut Microbiota Bacterial Species Associated with Mediterranean Diet-Related Food Groups in a Northern Spanish Population
Cited by: 39
Author(s): Carles Rosés, Amelia Marti, Salvador Quintana, José Ignacio Riezu-Boj, Julian Martínez, Fermı́n I. Milagro, Anna Barceló
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-58402-y

Wheat dwarfing influences selection of the rhizosphere microbiome
Cited by: 41
Author(s): Vanessa Nessner Kavamura, Rebekah J. Robinson, David Hughes, Ian M. Clark, Maike Rossmann, I. S. de Melo, P. R. Hirsch, Rodrigo Mendes, Tim H. Mauchline
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-97261-z

The gastric microbiota in patients with Crohn’s disease; a preliminary study
Cited by: 3
Author(s): Jerzy Ostrowski, Maria Kulecka, Iwona Zawada, Natalia Żeber‐Lubecka, Agnieszka Paziewska, Katarzyna Graca-Pakulska, Krzysztof Dąbkowski, Karolina Skubisz, Patrycja Cybula, Filip Ambrożkiewicz, Elżbieta Urasińska, Michał Mikula, Teresa Starzyńska
Software Mentions: 2
Published: almost 3 years ago

10.1128/mBio.00836-16

The Core and Seasonal Microbiota of Raw Bovine Milk in Tanker Trucks and the Impact of Transfer to a Milk Processing Facility
Cited by: 102
Author(s): Mary E. Kable, Yanin Srisengfa, Miles Laird, José J. Zaragoza, J. W. McLeod, J. Heidenreich, Maria L. Marco
Software Mentions: 2
Published: about 8 years ago

10.3390/nu11030547

Human Gut Microbiome Response Induced by Fermented Dairy Product Intake in Healthy Volunteers
Cited by: 50
Author(s): Olesya Volokh, Natalia Klimenko, Yulia Berezhnaya, Alexander Tyakht, Polina Nesterova, Anna Popenko, Dmitry Alexeev
Software Mentions: 2
Published: over 5 years ago

10.1186/s42523-021-00099-z

Perinatal exposure to tetracycline contributes to lasting developmental effects on offspring
Cited by: 4
Author(s): Elizabeth M. Hill, Christopher D. Howard, Tracy L. Bale, Eldin Jašarević
Software Mentions: 2
Published: over 3 years ago

10.1128/mSphere.00210-17

Comparison of the Microbiota of Older Adults Living in Nursing Homes and the Community
Cited by: 28
Author(s): Mary-Claire Roghmann, Alison D. Lydecker, Lauren E. Hittle, Robert T. DeBoy, Rebecca G. Nowak, JK Johnson, Emmanuel F. Mongodin
Software Mentions: 2
Published: almost 7 years ago

10.3390/microorganisms8060938

Sex-Specific Associations between Gut Prevotellaceae and Host Genetics on Adiposity
Cited by: 26
Author(s): Amelia Marti, José Ignacio Riezu-Boj, Elizabeth Guruceaga, Fermı́n I. Milagro, J. Alfredo Martínéz
Software Mentions: 2
Published: about 4 years ago

10.3390/microorganisms8081151

Discovery of Predictors of Mycoplasma hyopneumoniae Vaccine Response Efficiency in Pigs: 16S rRNA Gene Fecal Microbiota Analysis
Cited by: 9
Author(s): Peris M. Munyaka, Fany Blanc, Jordi Estellé, Gaëtan Lemonnier, Jean Jacques Leplat, Marie Rossignol, Déborah Jardet, Graham Plastow, Yvon Billon, Benjamin P. Willing, Claire Rogel–Gaillard
Software Mentions: 2
Published: about 4 years ago

10.1186/s40413-015-0074-z

The microbiome of the human lower airways: a next generation sequencing perspective
Cited by: 34
Author(s): Velma Aho, Pedro Pereira, Tari Haahtela, Ruby Pawankar, Petri Auvinen, Kaisa Koskinen
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0205784

Analysis of gut microbiota and the effect of lauric acid against necrotic enteritis in Clostridium perfringens and Eimeria side-by-side challenge model
Cited by: 74
Author(s): Wen Yang, Yue-Jia Lee, Hsin‐Yi Lu, Chung‐Hsi Chou, Chinling Wang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0188461

Composition and variation of respiratory microbiota in healthy military personnel
Cited by: 16
Author(s): Jun Hang, Nela Zavaljevski, Yu Yang, Valmik Desai, Richard C. Ruck, Louis Macareo, Richard G. Jarman, Jaques Reifman, Robert A. Kuschner, Paul B. Keiser
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0213384

Exploring the bacteriome in anthropophilic ticks: To investigate the vectors for diagnosis
Cited by: 27
Author(s): Aránzazu Portillo, Ana M. Palomar, María de Toro, Sonia Santibáñez, Paula Santibáñez, José A. Oteo
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00572-17

Antibiotic Treatments for Clostridium difficile Infection Are Associated with Distinct Bacterial and Fungal Community Structures
Cited by: 30
Author(s): Regina Lamendella, Justin Wright, Jada Hackman, Christopher J. McLimans, David R. Toole, William Bernard Rubio, Rebecca Drucker, Hoi Tong Wong, Kate Sabey, John P. Hegarty, David B. Stewart
Software Mentions: 1
Published: over 6 years ago

10.1017/jns.2016.38

A randomised, controlled, crossover study of the effect of diet on angiopoietin-like protein 4 (ANGPTL4) through modification of the gut microbiome
Cited by: 15
Author(s): Trine Blædel, Jacob Bak Holm, Ulrik Kræmer Sundekilde, Mette Søndergaard Schmedes, Anne Lundby Hess, Janne Kunchel Lorenzen, Karsten Kristiansen, Trine Kastrup Dalsgaard, Arne Astrup, Lesli H. Larsen
Software Mentions: 1
Published: over 8 years ago

10.1186/2049-2618-2-31

16S rRNA gene pyrosequencing of reference and clinical samples and investigation of the temperature stability of microbiome profiles
Cited by: 52
Author(s): Jun Hang, Valmik Desai, Nela Zavaljevski, Yu Yang, Xiangui Lin, Ravi Vijaya Satya, Luis Martínez, Jason M Blaylock, Richard G. Jarman, Stephen J. Thomas, Robert A. Kuschner
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2018.00862

Oral Microbiota Community Dynamics Associated With Oral Squamous Cell Carcinoma Staging
Cited by: 184
Author(s): Chao-Ping Yang, Yuan-Ming Yeh, Haiying Yu, Chia-Yin Chin, Chia-Wei Hsu, Hsuan Liu, Po-Jung Huang, Songnian Hu, Chun-Ta Liao, Kai-Ping Chang, Yu‐Cheng Chang
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.00767

Gender-Specific Associations Between Saliva Microbiota and Body Size
Cited by: 44
Author(s): Sajan C. Raju, Sonja Lagström, Pekka Ellonen, Willem M. de Vos, Johan G. Eriksson, Elisabete Weiderpass, Trine B. Rounge
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0125495

Chronic Trichuris muris Infection Decreases Diversity of the Intestinal Microbiota and Concomitantly Increases the Abundance of Lactobacilli
Cited by: 148
Author(s): Jacob Bak Holm, Daniel Sorobetea, Pia Kiilerich, Yuliaxis Ramayo-Caldas, Jordi Estellé, Tao Ma, Lise Madsen, Karsten Kristiansen, Marcus Svensson‐Frej
Software Mentions: 1
Published: over 9 years ago

10.1186/s40168-017-0377-0

Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth
Cited by: 98
Author(s): Alex Grier, Xing Qiu, Sanjukta Bandyopadhyay, Jeanne Holden‐Wiltse, Haeja A. Kessler, Ann Lindley Gill, Brooke Hamilton, Heidie Huyck, Sara K. Misra, Thomas J. Mariani, Rita M. Ryan, Lori Scholer, Kristin Scheible, Yi‐Horng Lee, Mary T. Caserta, Gloria S. Pryhuber, Steven R. Gill
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.01825

Metagenomic Profiling and Microbial Metabolic Potential of Perdido Fold Belt (NW) and Campeche Knolls (SE) in the Gulf of Mexico
Cited by: 15
Author(s): Luciana Raggi, Fernando García-Guevara, Elizabeth Ernestina Godoy-Lozano, Adrian Martínez-Santana, Alejandra Escobar‐Zepeda, Rosa Marı́a Gutiérrez-Rı́os, Antonio Loza, Enrique Merino, Alejandro Sánchez-Flores, Alexei F. Licea-Navarro, Liliana Pardo-López, Lorenzo Segovia, Katy Juarez
Software Mentions: 1
Published: about 4 years ago

10.3390/nu13030881

The Western Dietary Pattern Combined with Vancomycin-Mediated Changes to the Gut Microbiome Exacerbates Colitis Severity and Colon Tumorigenesis
Cited by: 8
Author(s): Niklas Aardema, Daphne Rodriguez, Arnaud J. Van Wettere, Abby D. Benninghoff, Korry Hintze
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-02067-7

Airway Microbial Diversity is Inversely Associated with Mite-Sensitized Rhinitis and Asthma in Early Childhood
Cited by: 52
Author(s): Chih Yung Chiu, Yi-Jen Chan, Yu Shuen Tsai, Ssu An Chen, Chia Jung Wang, Kuan Fu Chen, Injae Chung
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1008452

Protein kinases PknA and PknB independently and coordinately regulate essential Mycobacterium tuberculosis physiologies and antimicrobial susceptibility
Cited by: 28
Author(s): Jumei Zeng, John Platig, Tan Yun Cheng, Saima Ahmed, Yara Skaf, Lakshmi-Prasad Potluri, Daniel Schwartz, Hanno Steen, D. Branch Moody, Robert N. Husson
Software Mentions: 1
Published: over 4 years ago

10.1186/s12879-018-3272-9

Temporal instability of the post-surgical maxillary sinus microbiota
Cited by: 10
Author(s): Ioannis Koutsourelakis, Ashleigh A. Halderman, Syed Muaz Khalil, Lauren E. Hittle, Emmanuel F. Mongodin, Andrew P. Lane
Software Mentions: 1
Published: about 6 years ago

10.1007/s00442-017-3968-3

Nutritional composition of honey bee food stores vary with floral composition
Cited by: 80
Author(s): Philip Donkersley, Glenn Rhodes, Roger W. Pickup, Kevin C. Jones, Eileen F. Power, Geraldine A. Wright, Kenneth Wilson
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12866-017-1084-5

Association of coral algal symbionts with a diverse viral community responsive to heat shock
Cited by: 20
Author(s): Jan D Brüwer, Shobhit Agrawal, Yi Jin Liew, Manuel Aranda, Christian R. Voolstra
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2019.01912

Effects of Captivity and Season on the Gut Microbiota of the Brown Frog (Rana dybowskii)
Cited by: 30
Author(s): Qing Tong, Xiaoning Liu, Zongfu Hu, Jiafeng Ding, Bingrui Jia, Hongbin Wang, Jiantao Zhang
Software Mentions: 1
Published: about 5 years ago

10.3390/nu13082792

Administration of Lactobacillus reuteri Combined with Clostridium butyricum Attenuates Cisplatin-Induced Renal Damage by Gut Microbiota Reconstitution, Increasing Butyric Acid Production, and Suppressing Renal Inflammation
Cited by: 35
Author(s): Yu‐Ping Hsiao, Hsiao‐Ling Chen, Jia-Lun Tsai, Meei‐Yn Lin, Jiunn‐Wang Liao, Meng-Syuan Wei, Jiunn‐Liang Ko, Chu‐Chyn Ou
Software Mentions: 1
Published: about 3 years ago

10.7717/peerj.10026

Microbiomes of fish, sediment and seagrass suggest connectivity of coral reef microbial populations
Cited by: 2
Author(s): Rosa León‐Zayas, Molly McCargar, Joshua Adam Drew, Jennifer F. Biddle
Software Mentions: 1
Published: almost 4 years ago

10.7717/peerj.2660

Salivary microbiomes of indigenous Tsimane mothers and infants are distinct despite frequent premastication
Cited by: 14
Author(s): Cliff Han, Mary C. Martin, Armand E. K. Dichosa, Ashlynn R. Daughton, Seth Frietze, Hillard Kaplan, Michael Gurven, Joe Alcock
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2018.02757

Traumatic Brain Injury in Mice Induces Acute Bacterial Dysbiosis Within the Fecal Microbiome
Cited by: 91
Author(s): Todd J. Treangen, Justin Wagner, Mark P. Burns, Sonia Villapol
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00248-018-1191-3

The Airplane Cabin Microbiome
Cited by: 19
Author(s): Howard M. Weiss, Vicki Hertzberg, Chris L. Dupont, Josh L. Espinoza, Shawn Levy, Karen E. Nelson, Sharon L. Norris
Software Mentions: 1
Published: over 6 years ago

Projects: bioconductor: metagenomeSeq

Papers Mentioning metagenomeSeq 169