Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: makecdfenv
https://packages.ecosyste.ms/registries/bioconductor.org/packages/makecdfenv
CDF Environment Maker
1 version
Latest release: about 1 year ago
1 dependent package
72,815 downloads total
Papers Mentioning makecdfenv 11
10.1200/PO.17.00241
Transcriptional Subtyping and CD8 Immunohistochemistry Identifies Patients With Stage II and III Colorectal Cancer With Poor Prognosis Who Benefit From Adjuvant ChemotherapyCited by: 40
Author(s): Wendy L. Allen, Philip D. Dunne, Simon S. McDade, Enya Scanlon, Maurice B. Loughrey, Helen Coleman, Christopher McCann, Kristy McLaughlin, Zsuzsanna Németh, Najeeb Syed, Puthen V. Jithesh, Ken Arthur, Richard H. Wilson, Vicky M. Coyle, Darragh G. McArt, Graeme I. Murray, Leslie Samuel, Paolo Nuciforo, José Jimenez, Guillem Argilés, Rodrigo Dienstmann, J. Tabernero, Lucia Picariello, Luca Messerini, Stefania Nobili, Enrico Mini, Kieran Sheahan, Elizabeth J. Ryan, Patrick G. Johnston, Sandra Van Schaeybroeck, Mark Lawler, Daniel B. Longley
Software Mentions: 6
Published: about 6 years ago
10.1186/1756-0500-7-302
Assessment of a novel multi-array normalization method based on spike-in control probes suitable for microRNA datasets with global decreases in expressionCited by: 9
Author(s): Alain Sewer, Sylvain Gubian, Ulrike Kogel, Emilija Veljkovic, Wanjiang Han, Arnd Hengstermann, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 5
Published: over 10 years ago
10.7717/peerj.3737
Allele specific expression analysis identifies regulatory variation associated with stress-related genes in the Mexican highland maize landrace Palomero ToluqueñoCited by: 16
Author(s): M. Rocío Aguilar-Rangel, Ricardo A. Chávez Montes, Eric González‐Segovia, Jeffrey Ross‐Ibarra, June Simpson, Ruairidh J. H. Sawers
Software Mentions: 4
Published: about 7 years ago
10.1186/1471-2105-12-136
ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFsCited by: 2
Author(s): Chris Overall, Denis Carr, Ehsan Tabari, Kevin J. Thompson, Juliane Weller
Software Mentions: 4
Published: over 13 years ago
10.1002/cbf.3491
Identification and functional analysis of long non‐coding RNAs in the synovial membrane of osteoarthritis patientsCited by: 7
Author(s): Xiaolong Shui, Qipeng Xie, Shaomin Chen, Chengwei Zhou, Jianzhong Kong, Yi Wang
Software Mentions: 4
Published: almost 5 years ago
10.1186/1471-2164-11-50
Integrating multiple genome annotation databases improves the interpretation of microarray gene expression dataCited by: 17
Author(s): Jun Yin, Sarah McLoughlin, Ian B. Jeffery, Antonino Glaviano, Breandán N. Kennedy, Desmond G. Higgins
Software Mentions: 4
Published: almost 15 years ago
10.1186/1471-2229-14-97
ARACNe-based inference, using curated microarray data, of Arabidopsis thaliana root transcriptional regulatory networksCited by: 35
Author(s): Ricardo A. Chávez Montes, Gerardo Coello, Karla L. González-Aguilera, Nayelli Marsch-Martínez, Stefan de Folter, Elena Álvarez-Buylla
Software Mentions: 4
Published: over 10 years ago
10.1186/s12885-018-4103-5
A 35-gene signature discriminates between rapidly- and slowly-progressing glioblastoma multiforme and predicts survival in known subtypes of the cancerCited by: 25
Author(s): Azeez Ayomide Fatai, Junaid Gamieldien
Software Mentions: 2
Published: over 6 years ago
10.1186/s12864-017-4266-5
Framework for reanalysis of publicly available Affymetrix® GeneChip® data sets based on functional regions of interestCited by: 4
Author(s): Ernur Saka, Benjamin J. Harrison, Kirk West, Jeffrey C. Petruska, Eric C. Rouchka
Software Mentions: 2
Published: almost 7 years ago
10.3390/microorganisms8040562
Interactions among Redox Regulators and the CtrA Phosphorelay in Dinoroseobacter shibae and Rhodobacter capsulatusCited by: 6
Author(s): Sonja Koppenhöfer, Andrew S. Lang
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0078497
Optimized Probe Masking for Comparative Transcriptomics of Closely Related SpeciesCited by: 5
Author(s): Yvonne Poeschl, Carolin Delker, Jana Trenner, Kristian K. Ullrich, Marcel Quint, Ivo Große
Software Mentions: 2
Published: about 11 years ago