bioconductor: maftools | Projects

10.3389/fonc.2021.710694

The Prognostic Value of the DNA Repair Gene Signature in Head and Neck Squamous Cell Carcinoma
Cited by: 2
Author(s): Ruijie Ming, Enhao Wang, Jiahui Wei, Jinxiong Shen, Shimin Zong, Hongjun Xiao
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.677609

Characterization of the Immune Cell Infiltration Profile in Pancreatic Carcinoma to Aid in Immunotherapy
Cited by: 6
Author(s): De Luo, Fei Li Kuang, Juan Du, Mimi Zhou, Fangyi Peng, Yu Gan, Cheng Fang, Xiaoli Yang, Bo Li, Song Su
Software Mentions: 3
Published: over 3 years ago

10.1001/jamanetworkopen.2020.13201

Association of<i>MUC16</i>Mutation With Response to Immune Checkpoint Inhibitors in Solid Tumors
Cited by: 50
Author(s): Lei Zhang, Xiaohong Han, Yuankai Shi
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-71527-4

A pan-cancer assessment of alterations of the kinase domain of ULK1, an upstream regulator of autophagy
Cited by: 17
Author(s): Mukesh Kumar, Elena Papaleo
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-021-94064-0

Exome sequencing identifies novel somatic variants in African American esophageal squamous cell carcinoma
Cited by: 3
Author(s): Hayriye V. Erkizan, Shrey Sukhadia, Thanemozhi G. Natarajan, Gustavo Mariño, Vicente Notario, Jack H. Lichy, Robert G. Wadleigh
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-97102-z

A ferroptosis-associated gene signature for the prediction of prognosis and therapeutic response in luminal-type breast carcinoma
Cited by: 3
Author(s): Yang Peng, Haochen Yu, Yingzi Zhang, Fanli Qu, Zhenrong Tang, Chi Qu, Jiao Tian, Beige Zong, Yu Wang, Haoyu Ren, Shengchun Liu
Software Mentions: 3
Published: about 3 years ago

10.7150/ijms.54747

Granzyme family acts as a predict biomarker in cutaneous melanoma and indicates more benefit from anti-PD-1 immunotherapy
Cited by: 10
Author(s): Xia Wu, Xiaojie Wang, Yan Zhao, Kun Li, Bo Yu, Jianzhong Zhang
Software Mentions: 3
Published: almost 4 years ago

10.1186/s40425-019-0660-7

Epigenetic alterations are associated with tumor mutation burden in non-small cell lung cancer
Cited by: 28
Author(s): Lun Cai, Hua Bai, Jianchun Duan, Zhijie Wang, Shugeng Gao, Di Wang, Shuhang Wang, Jun Jiang, Jiefei Han, Yanhua Tian, Xue Zhang, Yue Hao, Minghui Li, Bingding Huang, Jie He, Jie Wang
Software Mentions: 3
Published: over 5 years ago

10.1155/2020/8758090

Major Histocompatibility Complex Genes as Therapeutic Opportunity for Immune Cold Molecular Cancer Subtypes
Cited by: 2
Author(s): Paweł Karpiński, Łukasz Łaczmański, Maria M. Sąsiadek
Software Mentions: 3
Published: about 4 years ago

10.3390/ijms22136957

TENT4A Non-Canonical Poly(A) Polymerase Regulates DNA-Damage Tolerance via Multiple Pathways That Are Mutated in Endometrial Cancer
Cited by: 8
Author(s): Umakanta Swain, Gilgi Friedlander, Urmila Sehrawat, Avital Sarusi-Portuguez, Ron Rotkopf, Charlotte Ebert, Tamar Paz-Elizur, Rivka Dikstein, Thomas Carell, Nicholas E. Geacintov, Zvi Livneh
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.672597

DIVIS: Integrated and Customizable Pipeline for Cancer Genome Sequencing Analysis and Interpretation
Cited by: 0
Author(s): Xiaoyu He, Yu Zhang, Dan-Yang Yuan, Xinyin Han, Jiayin He, Xiaohong Duan, Siyao Liu, Xintong Wang, Beifang Niu
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.705869

Identification of Prognostic miRNAs Associated With Immune Cell Tumor Infiltration Predictive of Clinical Outcomes in Patients With Non-Small Cell Lung Cancer
Cited by: 3
Author(s): Yuepeng Zhang, Kai Mi, Zhiheng Li, Qiang Lü, Meiyu Lv, Yu-Shan Wu, Ligong Yuan, Shoude Jin
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2021.671392

Expression and Prognosis Analysis of SUMOylation Regulators in Oral Squamous Cell Carcinoma Based on High-Throughput Sequencing
Cited by: 8
Author(s): Yutong Meng, Xiaozhi Li
Software Mentions: 2
Published: over 3 years ago

10.3390/genes10090678

Focal Recurrent Copy Number Alterations Characterize Disease Relapse in High Grade Serous Ovarian Cancer Patients with Good Clinical Prognosis: A Pilot Study
Cited by: 8
Author(s): Matteo Dugo, Andrea Devecchi, Loris De Cecco, Erika Cecchin, Delia Mezzanzanica, Marialuisa Sensi, Marina Bagnoli
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2021.685371

Identification of Distinct Molecular Patterns and a Four-Gene Signature in Colon Cancer Based on Invasion-Related Genes
Cited by: 3
Author(s): Yanfang Dong, Tao Shang, HaiXin Ji, Xiukou Zhou, Zhi Chen
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/5981870

Immune Infiltration Landscape in Lung Squamous Cell Carcinoma Implications
Cited by: 7
Author(s): Jungang Zhao, Wenming Bao, Weiyang Cai
Software Mentions: 2
Published: about 4 years ago

10.3389/fcell.2021.658856

SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma
Cited by: 8
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 2
Published: over 3 years ago

10.1002/ctm2.32

Classification of gastric cancer by EBV status combined with molecular profiling predicts patient prognosis
Cited by: 8
Author(s): Caiyun He, Miaozhen Qiu, Xinhua Yang, Da‐Lei Zhou, Jingyi Ma, Ya-Kang Long, Zu‐Lu Ye, Baoshan Xu, Qi Zhao, Ying Jin, Shi-Xun Lu, Zhiqiang Wang, Wen‐Long Guan, Bin Zhao, Zhiwei Zhou, Jian Yong Shao, Rui‐hua Xu
Software Mentions: 2
Published: over 4 years ago

10.1002/ctm2.399

Identification of biomarkers complementary to homologous recombination deficiency for improving the clinical outcome of ovarian serous cystadenocarcinoma
Cited by: 18
Author(s): Zhiwen Shi, Qingguo Zhao, Bin Lv, Xinyu Qu, Xiao Han, Hongyan Wang, Junjun Qiu, Keqin Hua
Software Mentions: 2
Published: over 3 years ago

10.3390/cells9061398

Conditionally Reprogrammed Cells from Patient-Derived Xenograft to Model Neuroendocrine Prostate Cancer Development
Cited by: 12
Author(s): Xinpei Ci, Jun Hao, Xin Dong, Hui Xue, Rebecca Wu, Si‐Sun Choi, Anne Haegert, Colin C. Collins, Xuefeng Li, Dong Lin, Yuzhuo Wang
Software Mentions: 2
Published: over 4 years ago

10.3390/cancers13133123

Molecular Alterations in Relation to Histopathological Characteristics in a Large Series of Pediatric Papillary Thyroid Carcinoma from a Single Institution
Cited by: 10
Author(s): Elisabetta Macerola, Agnese Proietti, Anello Marcello Poma, Clara Ugolini, Liborio Torregrossa, Paola Vignali, Alessio Basolo, Gabriele Materazzi, Rossella Elisei, Ferruccio Santini, Fulvio Basolo
Software Mentions: 2
Published: over 3 years ago

10.3390/cancers13112709

Prognostic Genetic Biomarkers Based on Oncogenic Signaling Pathways for Outcome Prediction in Patients with Oral Cavity Squamous Cell Carcinoma
Cited by: 9
Author(s): Wen‐Lang Fan, Lan-Yan Yang, Chia-Hsun Hsieh, Tsung‐Chieh Lin, Mei-Yeh Jade Lu, Chun‐Ta Liao
Software Mentions: 2
Published: over 3 years ago

10.3390/cancers11111753

Targeted-Gene Sequencing to Catch Triple Negative Breast Cancer Heterogeneity before and after Neoadjuvant Chemotherapy
Cited by: 13
Author(s): Serena Di Cosimo, Valentina Appierto, M. Silvestri, Giancarlo Pruneri, Andrea Vingiani, Federica Perrone, Adele Busico, Secondo Folli, Gianfranco Scaperrotta, Filippo G. De Braud, Giulia Bianchi, Stefano Cavalieri, Maria Grazia Daidone, Matteo Dugo
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-74580-1

Targeted sequencing reveals the somatic mutation landscape in a Swedish breast cancer cohort
Cited by: 10
Author(s): Argyri Mathioudaki, Viktor Ljungström, Malin Melin, Maja L. Arendt, Jessika Nordin, Åsa Karlsson, Eva Murén, Pushpa Saksena, Jennifer R. S. Meadows, Voichita D. Marinescu, Tobias Sjöblom, Kerstin Lindblad‐Toh
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-84787-5

Pancancer survival analysis of cancer hallmark genes
Cited by: 561
Author(s): Ádám Nagy, Gyöngyi Munkácsy, Balázs Győrffy
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.102728

EP300 mutation is associated with tumor mutation burden and promotes antitumor immunity in bladder cancer patients
Cited by: 52
Author(s): Gongmin Zhu, Lijiao Pei, Yuan Li, Xin Gou
Software Mentions: 2
Published: almost 5 years ago

10.3390/cancers13030490

Mutational Signatures Driven by Epigenetic Determinants Enable the Stratification of Patients with Gastric Cancer for Therapeutic Intervention
Cited by: 4
Author(s): Jaqueline Ramalho Buttura, Monize Nakamoto Provisor Santos, Renan Valieris, Rodrigo Duarte Drummond, Alexandre Defelicibus, João Paulo da Silveira Nogueira Lima, Vinícius Fernando Calsavara, Helano C. Freitas, Vladmir Cláudio Cordeiro de Lima, Thais Fernanda Bartelli, Marc Wiedner, Rafael Rosales, Kenneth J. Gollob, Joanna I. Loizou, Emmanuel Dias-Neto, Diana Noronha Nunes, Israel Tojal da Silva
Software Mentions: 2
Published: almost 4 years ago

10.3390/mi12010049

Design and Clinical Application of an Integrated Microfluidic Device for Circulating Tumor Cells Isolation and Single-Cell Analysis
Cited by: 7
Author(s): Mingxin Xu, Wenwen Liu, Kun Zou, Wei Song, Xinri Zhang, Encheng Li, Qi Wang
Software Mentions: 2
Published: almost 4 years ago

10.1097/MD.0000000000026623

Increased expression of Cyclin F in liver cancer predicts poor prognosis
Cited by: 3
Author(s): Zelong Yang, Yang Han, Tao Guo, Yifei Wang, Kai He, Haoran Hu, Yong Chen
Software Mentions: 2
Published: over 3 years ago

10.1186/s12935-020-01413-6

Prognostic value of an autophagy-related gene expression signature for endometrial cancer patients
Cited by: 10
Author(s): Hui Wang, Xiaoling Ma, Jinhui Liu, Yicong Wan, Yi Jiang, Yankai Xia, Wenjun Cheng
Software Mentions: 2
Published: over 4 years ago

10.1186/s12935-021-02048-x

Prognostic value of tumor immune cell infiltration patterns in colon adenocarcinoma based on systematic bioinformatics analysis
Cited by: 3
Author(s): Hao Xu, Qianhui Xu, Lu Yin
Software Mentions: 2
Published: over 3 years ago

10.7150/ijms.50916

Somatic Mutation Profiling of Papillary Thyroid Carcinomas by Whole-exome Sequencing and Its Relationship with Clinical Characteristics
Cited by: 3
Author(s): Tingyue Qi, Xin Rong, Qingling Feng, Hongyan Sun, Haiyan Cao, Yan Yang, Hao Feng, Linhai Zhu, Lei Wang, Qiu Du
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12935-021-02130-4

LPCAT1 overexpression promotes the progression of hepatocellular carcinoma
Cited by: 20
Author(s): Rong‐Quan He, Jian‐Di Li, Xiu‐Fang Du, Yi‐Wu Dang, Linjie Yang, Zhi‐Guang Huang, Limin Liu, Lin Liao, Hong Yang, Gang Chen
Software Mentions: 2
Published: over 3 years ago

10.1186/s12935-021-02191-5

TNFAIP3 mutation may be associated with favorable overall survival for patients with T-cell lymphoma
Cited by: 6
Author(s): Cunte Chen, Zheng Chen, Ling Huang, Lingling Zhou, Lihua Zhu, Sichu Liu, Guopei Luo, Wenyu Li, Chengwu Zeng, Yangqiu Li
Software Mentions: 2
Published: about 3 years ago

10.18632/aging.202594

Artificial intelligence prediction model for overall survival of clear cell renal cell carcinoma based on a 21-gene molecular prognostic score system
Cited by: 6
Author(s): Qiliang Peng, Yi Shen, Kai Fu, Zheng Dai, Lü Jin, Dian Yang, Jin Zhu
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22115652

Expression and Prognostic Characteristics of Ferroptosis-Related Genes in Colon Cancer
Cited by: 16
Author(s): Jie Zhu, Jie Zhu, Zhengwei Xie
Software Mentions: 2
Published: over 3 years ago

10.3390/biomedicines9081021

Utilizing Patient-Derived Epithelial Ovarian Cancer Tumor Organoids to Predict Carboplatin Resistance
Cited by: 11
Author(s): J Górski, Zhuwei Zhang, Joseph R. McCorkle, Jodi M. DeJohn, Chi Wang, Rachel W. Miller, Holly H. Gallion, Charles S. Dietrich, Frederick R. Ueland
Software Mentions: 2
Published: over 3 years ago

10.1155/2019/6096350

Tumor Mutational Burden and Genomic Alterations in Chinese Small Cell Lung Cancer Measured by Whole-Exome Sequencing
Cited by: 5
Author(s): Shan Su, Jianyong Zou, Ye Zeng, Wenchang Cen, Wei Zhou, Yan Liu, Duo-Hua Su, Xianlan Zhang, Hui Huang, Li An, Zhihao Huang, Yun Jin, Lei Li, Ning Su, Yiqiang Xie, Zhengang Zhao, Jian-Xiong Liu
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.709579

m6A Regulator-Mediated Methylation Modification Model Predicts Prognosis, Tumor Microenvironment Characterizations and Response to Immunotherapies of Clear Cell Renal Cell Carcinoma
Cited by: 9
Author(s): Wenhao Xu, Xi Tian, Wangrui Liu, Aihetaimujiang Anwaier, Jiaqi Su, Wenkai Zhu, Fangning Wan, Guohai Shi, Gaomeng Wei, Yuanyuan Qu, Ye Zhang, Dingwei Ye
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2020.571545

Integration of the Tumor Mutational Burden and Tumor Heterogeneity Identify an Immunological Subtype of Melanoma With Favorable Survival
Cited by: 11
Author(s): Yanmei Gao, Chunhe Yang, Ning He, Guodong Zhao, Jianfei Wang, Yadong Yang
Software Mentions: 2
Published: about 4 years ago

10.3389/fmolb.2021.683240

Immunological Significance of Prognostic DNA Methylation Sites in Hepatocellular Carcinoma
Cited by: 12
Author(s): Qianhui Xu, Yuanbo Hu, Shaohuai Chen, Yulun Zhu, Siwei Li, Feng Shen, Yifan Guo, Tao Sun, Xiaoyu Chen, Jinpeng Jiang, Wen Huang
Software Mentions: 2
Published: over 3 years ago

10.3389/fmolb.2021.645084

Identification of Prognostic Glycolysis-Related lncRNA Signature in Tumor Immune Microenvironment of Hepatocellular Carcinoma
Cited by: 24
Author(s): Yang Bai, Hanyang Lin, Jiaqi Chen, Yulian Wu, Shi’an Yu
Software Mentions: 2
Published: over 3 years ago

10.3389/fmolb.2020.599142

Identification of Tumor Mutation Burden and Immune Infiltrates in Hepatocellular Carcinoma Based on Multi-Omics Analysis
Cited by: 17
Author(s): Yin Li, Liuzhi Zhou, Ruochen Xu
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2021.708294

DNA Damage Response and Repair Gene Alterations Increase Tumor Mutational Burden and Promote Poor Prognosis of Advanced Lung Cancer
Cited by: 11
Author(s): Jing Dai, Minlin Jiang, Kan He, Hao Wang, Peixin Chen, Haoyue Guo, Wencheng Zhao, Hui Lü, Yayi He, Caicun Zhou
Software Mentions: 2
Published: about 3 years ago

10.3389/fmed.2021.702638

Molecular Characteristics, Clinical Implication, and Cancer Immunity Interactions of Pyroptosis-Related Genes in Breast Cancer
Cited by: 35
Author(s): Dandan Xu, Zhipeng Ji, Lei Qiang
Software Mentions: 2
Published: about 3 years ago

10.3389/fmed.2021.662460

Pan-Cancer Analysis of Genomic and Prognostic Characteristics Associated With Coronavirus Disease 2019 Regulators
Cited by: 6
Author(s): Jian Zhang, Huali Jiang, Kunpeng Du, Tao Xie, Baiyao Wang, Chengcong Chen, Bohong Cen, Yawei Yuan, Jiacai Ye
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2020.01933

Construction of a Prognostic Immune Signature for Squamous-Cell Lung Cancer to Predict Survival
Cited by: 6
Author(s): Rui Lian Chen, Jing Zhou, Yang Cao, Liankang Sun, Shan Su, Xiao Jie Deng, Jie Lin, Zhi Wei Xiao, Zhuang Zhong Chen, Si Yu Wang, Li Zhu Lin
Software Mentions: 2
Published: about 4 years ago

10.3389/fonc.2021.650673

Establishment of an Immune Cell Infiltration Score to Help Predict the Prognosis and Chemotherapy Responsiveness of Gastric Cancer Patients
Cited by: 26
Author(s): Quan Jiang, Jie Sun, Hao Chen, Chen Ding, Zhaoqing Tang, Yuanyuan Ruan, Fenglin Liu, Yihong Sun
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.715460

DNA Damage Repair Profiles Alteration Characterize a Hepatocellular Carcinoma Subtype With Unique Molecular and Clinicopathologic Features
Cited by: 12
Author(s): Peng Lin, Ruizhi Gao, Rong Wen, Yun He, Hong Yang
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.565341

Multi-Omics Analysis Reveals Novel Subtypes and Driver Genes in Glioblastoma
Cited by: 11
Author(s): Yuan Yang, Qi Pan, Xiang Wang, Yan‐Hui Liu, Li Yu, Qing Mao
Software Mentions: 2
Published: almost 4 years ago

10.3389/fgene.2021.670384

Development and Validation of a Hypoxia-Related Signature for Predicting Survival Outcomes in Patients With Bladder Cancer
Cited by: 14
Author(s): Facai Zhang, Xiaoming Wang, Yunjin Bai, Huan Hu, Yubo Yang, Jiahao Wang, Yin Tang, Honggui Ma, Dechao Feng, Dengxiong Li, Ping Han
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.603660

FAT3 Mutation Is Associated With Tumor Mutation Burden and Poor Prognosis in Esophageal Cancer
Cited by: 13
Author(s): Zixin Guo, Xin Yan, Congkuan Song, Qingwen Wang, Yujin Wang, Peter Liu, Jingyu Huang, Sheng Li, Weidong Hu
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/2861240

Recurrent Neoantigens in Colorectal Cancer as Potential Immunotherapy Targets
Cited by: 8
Author(s): Chao Chen, Songming Liu, Ruokai Qu, Bo Li
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2021.669694

Association of RYR2 Mutation With Tumor Mutation Burden, Prognosis, and Antitumor Immunity in Patients With Esophageal Adenocarcinoma
Cited by: 31
Author(s): Xinwei Han, Long Liu, Dechao Jiao, Chunguang Guo, Libo Wang, Zhaonan Li, Zhenqiang Sun, Yanan Zhao
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.660273

A Poliovirus Receptor (CD155)-Related Risk Signature Predicts the Prognosis of Bladder Cancer
Cited by: 6
Author(s): Cong Luo, Wenrui Ye, Jiao Hu, Belaydi Othmane, Huihuang Li, Jinbo Chen, Xiongbing Zu
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2021.666300

Identification of a Costimulatory Molecule-Related Signature for Predicting Prognostic Risk in Prostate Cancer
Cited by: 11
Author(s): Shengdong Ge, Xiaoliang Hua, Juan Chen, Heng Xiao, Li Zhang, Jun Zhou, Chaozhao Liang, Sheng Tai
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.584213

A Four−Gene-Based Risk Score With High Prognostic Value in Gastric Cancer
Cited by: 3
Author(s): Bingdong Zhang, Yuerui Li, Yang Liu, Yongbing Chen
Software Mentions: 1
Published: about 3 years ago

10.3389/fonc.2020.01430

Long Non-Coding RNA Profile Study Identifies an Immune-Related lncRNA Prognostic Signature for Kidney Renal Clear Cell Carcinoma
Cited by: 32
Author(s): Zhuolun Sun, Changying Jing, Chutian Xiao, Tengcheng Li
Software Mentions: 1
Published: over 4 years ago

10.18632/aging.103972

Colon cancer combined with obesity indicates improved survival- research on relevant mechanism
Cited by: 8
Author(s): Yang Zhou, Xiao‐Hong Wei, Yuning Pan, Min Zhang, Jianping Xu, Bo Yu
Software Mentions: 1
Published: about 4 years ago

10.3389/fonc.2021.596789

Differential Mutation Detection Capability Through Capture-Based Targeted Sequencing in Plasma Samples in Hepatocellular Carcinoma
Cited by: 8
Author(s): Jian Gao, Lei Xi, Rentao Yu, Huailong Xu, Min Wu, Hong Huang
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers13133211

Activation of DNA Damage Tolerance Pathways May Improve Immunotherapy of Mesothelioma
Cited by: 3
Author(s): Hélène Brossel, Alexis Fontaine, Clotilde Hoyos, Majeed Jamakhani, M. Willems, Malik Hamaïdia, Luc Willems
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-61575-1

ecTMB: a robust method to estimate and classify tumor mutational burden
Cited by: 14
Author(s): Lijing Yao, Yao Fu, Marghoob Mohiyuddin, Hugo Y. K. Lam
Software Mentions: 1
Published: over 4 years ago

10.1186/s12885-021-08078-y

RB1 and TP53 co-mutations correlate strongly with genomic biomarkers of response to immunity checkpoint inhibitors in urothelial bladder cancer
Cited by: 16
Author(s): Ramón González Manzano, Ana Catalán-Latorre, Antonio Brugarolas
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2019.01360

Genomic Profiles of a Patient of Pulmonary Hepatoid Adenocarcinoma With High AFP Level: A Case Report
Cited by: 10
Author(s): Jinglin Li, Hao Qi, Bin Xu, Jing Zhao, Hongjun Gao, Xiuwei Ma, Xiaoqing Liu
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-79195-0

Somatic alterations and mutational burden are potential predictive factors for metachronous development of early gastric cancer
Cited by: 7
Author(s): Kazuhiro Sakuta, Yu Sasaki, Yasuhiko Abe, Hidenori Sato, Masakuni Shoji, Takao Yaoita, Makoto Yagi, Naoko Mizumoto, Yusuke Onozato, Takashi Kon, Ayumi Koseki, Sanai Sato, Ryoko Murakami, Yuki Miyano, Yoshiyuki Ueno
Software Mentions: 1
Published: almost 4 years ago

10.1155/2020/8873104

Integrative Analysis Reveals the Landscape of Hypoxia-Inducible Factor (HIF) Family Genes in Pan-Cancer
Cited by: 2
Author(s): Qiankun Yang, Xue-Xin Wang, Yang Wang, Ni Ni
Software Mentions: 1
Published: almost 4 years ago

10.18632/aging.202613

Identification and validation of a glycolysis-associated multiomics prognostic model for hepatocellular carcinoma
Cited by: 3
Author(s): Tuo Deng, Qian Ye, Chen Jin, Manman Wu, Kaiyu Chen, Jinhuan Yang, Zi-Yan Chen, Xianjun Yu, Gang Chen, Yi Wang
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.202238

Intra-tumoral heterogeneity and immune responses predicts prognosis of gastric cancer
Cited by: 6
Author(s): Feng Wu, Yue Wang, Siyuan Chen, Xiaoyan Zhu
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms19103250

PR/SET Domain Family and Cancer: Novel Insights from the Cancer Genome Atlas
Cited by: 28
Author(s): Anna Sorrentino, Antonio Federico, Monica Rienzo, Patrizia Gazzerro, Maurizio Bifulco, Alfredo Ciccodicola, Amelia Casamassimi, Ciro Abbondanza
Software Mentions: 1
Published: about 6 years ago

10.3389/fonc.2021.682017

Characteristics of Pan-Cancer Patients With Ultrahigh Tumor Mutation Burden
Cited by: 4
Author(s): Hong Ye, Jun Ho Ji, Min Shi, Yan Shi, Jing Liu, Junwei Wu, Catherine F. Yang, Xi Wu, Qingyuan Li, Wei Zhu, Jingjie Li, Xiaoli Gong, Jun Zhang
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2021.747270

Integrating Genetic and Transcriptomic Data to Reveal Pathogenesis and Prognostic Markers of Pancreatic Adenocarcinoma
Cited by: 2
Author(s): Kai-Song Bai, Tong Zhao, Yilong Li, Xinjian Li, Zhantian Zhang, Zu-Chao Du, Zimin Wang, Yan Xu, Bei Sun, Xuewei Bai
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0242793

Correlation of genetic alterations by whole-exome sequencing with clinical outcomes of glioblastoma patients from the Lebanese population
Cited by: 1
Author(s): Fadi Saadeh, Rami Z. Morsi, Abdullah El-Kurdi, Georges Nemer, Rami Mahfouz, Maya Charafeddine, Jessica Khoury, Marwan Najjar, Pierre Khoueiry, Hazem Assi
Software Mentions: 1
Published: almost 4 years ago

10.3390/v9090252

Analysis of Class I Major Histocompatibility Complex Gene Transcription in Human Tumors Caused by Human Papillomavirus Infection
Cited by: 27
Author(s): Steven F. Gameiro, Ali Zhang, Farhad Ghasemi, John W. Barrett, Anthony C. Nichols, Joe S. Mymryk
Software Mentions: 1
Published: about 7 years ago

10.1007/s40291-020-00462-x

Use of an Integrated Pan-Cancer Oncology Enrichment Next-Generation Sequencing Assay to Measure Tumour Mutational Burden and Detect Clinically Actionable Variants
Cited by: 31
Author(s): Valerie Pestinger, Matthew Smith, Toju Sillo, John M. Findlay, Jean-François Laes, Gerald S. Martin, Gary Middleton, Philippe Taniere, Andrew D Beggs
Software Mentions: 1
Published: over 4 years ago

10.1038/s41416-020-0999-z

Whole-exome sequencing of long-term, never relapse exceptional responders of trastuzumab-treated HER2+ metastatic breast cancer
Cited by: 3
Author(s): Naomi Walsh, Catherine Andrieu, Peter O’Donovan, Cecily Quinn, Alanna Maguire, Simon J. Furney, Giuseppe Gullo, John Crown
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.20404

A comprehensive genomic meta-analysis identifies confirmatory role of<i>OBSCN</i>gene in breast tumorigenesis
Cited by: 21
Author(s): Barani Kumar Rajendran, Chu‐Xia Deng
Software Mentions: 1
Published: over 7 years ago

10.3390/life11090925

Identification of Immune Function-Related Subtypes in Cutaneous Melanoma
Cited by: 1
Author(s): Lin Liu, Junkai Zhu, Tong‐Shou Jin, Menghao Huang, Yi Chen, Li Xu, Wenxuan Chen, Bo Jiang, Fangrong Yan
Software Mentions: 1
Published: about 3 years ago

10.1007/s00262-021-02852-4

Efficacy and safety of anti-PD-1-based therapy in combination with PARP inhibitors for patients with advanced solid tumors in a real-world setting
Cited by: 8
Author(s): Zhaozhen Wu, Haitao Tao, Sujie Zhang, Xiao Wang, Junxun Ma, Ruixin Li, Zhefeng Liu, Jinliang Wang, Pengfei Cui, Shixue Chen, Di Huang, Ziwei Huang, Xuan Zheng, Yi Hu
Software Mentions: 1
Published: over 3 years ago

10.1172/jci.insight.145307

Syngeneic tobacco carcinogen–induced mouse lung adenocarcinoma model exhibits PD-L1 expression and high tumor mutational burden
Cited by: 11
Author(s): Laura P. Stabile, Vikas Kumar, Autumn Gaither-Davis, L. Eric Huang, Frank P. Vendetti, Princey Devadassan, Sanja Đačić, Riyue Bao, Richard A. Steinman, Timothy F. Burns, Christopher J. Bakkenist
Software Mentions: 1
Published: almost 4 years ago

10.7150/jca.30307

A novel gene signature combination improves the prediction of overall survival in urinary bladder cancer
Cited by: 16
Author(s): Siteng Chen, Ning Zhang, Jianhua Shao, Tao Wang, Xiang Wang
Software Mentions: 1
Published: almost 6 years ago

10.7150/jca.37017

The somatic mutation landscape of Chinese Colorectal Cancer
Cited by: 16
Author(s): Rong Ma, Changwen Jing, Yuan Zhang, Hongyan Cao, Siwen Liu, Zhuo Wang, Dan Chen, Junying Zhang, Yang Wu, Jianzhong Wu, Jifeng Feng
Software Mentions: 1
Published: almost 5 years ago

10.3389/fgene.2021.551605

Tumor Microenvironment Analysis Identified Subtypes Associated With the Prognosis and the Tumor Response to Immunotherapy in Bladder Cancer
Cited by: 9
Author(s): Hongxian Zhang, Jiwen Song, Junqiang Dong, Zhuo Liu, Lixuan Lin, Bing Wang, Qingjie Ma, Lulin Ma
Software Mentions: 1
Published: over 3 years ago

10.1186/s13046-021-02026-1

Kidney cancer biomarkers and targets for therapeutics: survivin (BIRC5), XIAP, MCL-1, HIF1α, HIF2α, NRF2, MDM2, MDM4, p53, KRAS and AKT in renal cell carcinoma
Cited by: 38
Author(s): Fengzhi Li, Ieman Aljahdali, Renyuan Zhang, Kent L. Nastiuk, John J. Krolewski, Xiang Ling
Software Mentions: 1
Published: over 3 years ago

10.3389/fbioe.2020.00702

Characterization of Neoantigen Load Subgroups in Gynecologic and Breast Cancers
Cited by: 7
Author(s): Yue Zhu, Xiangzhao Meng, Xinjia Ruan, Xiaofan Lu, Fangrong Yan, Fei Wang
Software Mentions: 1
Published: over 4 years ago

10.18632/aging.103781

SYNE1 mutation may enhance the response to immune checkpoint blockade therapy in clear cell renal cell carcinoma patients
Cited by: 18
Author(s): Pengju Li, Jeifei Xiao, Bangfen Zhou, Jinhuan Wei, Junhang Luo, Wei Chen
Software Mentions: 1
Published: about 4 years ago

10.1186/s12935-020-01428-z

Establishment of a novel cell cycle-related prognostic signature predicting prognosis in patients with endometrial cancer
Cited by: 22
Author(s): Jinhui Liu, Jie Mei, Siyue Li, Zhipeng Wu, Yan Zhang
Software Mentions: 1
Published: over 4 years ago

10.3389/fmolb.2020.569414

Systematic Analysis of Coronavirus Disease 2019 (COVID-19) Receptor ACE2 in Malignant Tumors: Pan-Cancer Analysis
Cited by: 10
Author(s): Jukun Song, Jing Han, Feng Liu, Chen Xianlin, Shenqi Qian, Yadong Wang, Zhenyu Jia, Xiaofeng Duan, Xiangyan Zhang, Jianguo Zhu
Software Mentions: 1
Published: about 4 years ago

10.3389/fmolb.2021.648402

Pan-Cancer Analysis of FURIN as a Potential Prognostic and Immunological Biomarker
Cited by: 12
Author(s): Bolun Zhou, Shugeng Gao
Software Mentions: 1
Published: over 3 years ago

Projects: bioconductor: maftools

Papers Mentioning maftools 288