Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: maanova

https://packages.ecosyste.ms/registries/bioconductor.org/packages/maanova

Tools for analyzing Micro Array experiments
1 version
Latest release: about 1 year ago
36,526 downloads total

Papers Mentioning maanova 20

10.1534/g3.120.401270

Application of Transcriptional Gene Modules to Analysis of <i>Caenorhabditis elegans</i>’ Gene Expression Data
Cited by: 7
Author(s): Michael Cary, Katie Podshivalova, Cynthia Kenyon
Software Mentions: 11
Published: about 4 years ago

10.1155/2008/147563

Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data: Tools for the First Steps
Cited by: 6
Author(s): Grier P. Page, Issa Coulibaly
Software Mentions: 10
Published: over 16 years ago

10.1371/journal.pone.0019024

Functional Genomics Unique to Week 20 Post Wounding in the Deep Cone/Fat Dome of the Duroc/Yorkshire Porcine Model of Fibroproliferative Scarring
Cited by: 21
Author(s): Loren H. Engrav, Christopher K. Tuggle, Kathleen F. Kerr, Kehao Zhu, Surawej Numhom, Oliver Couture, Richard P. Beyer, Anne M. Hocking, Gretchen J. Carrougher, Maria Luiza Christóvão Ramos, Matthew B. Klein, Nicole S. Gibran
Software Mentions: 6
Published: over 13 years ago

10.1186/1471-2105-14-165

Separate-channel analysis of two-channel microarrays: recovering inter-spot information
Cited by: 28
Author(s): Gordon K. Smyth, Naomi Altman
Software Mentions: 5
Published: over 11 years ago

10.1186/1471-2164-15-687

Species and gene divergence in Littorina snails detected by array comparative genomic hybridization
Cited by: 20
Author(s): Marina Panova, Tomas Johansson, Björn Canbäck, Johan Bentzer, Magnus Alm Rosenblad, Kerstin Johannesson, Anders Tunlid, Carl André
Software Mentions: 5
Published: almost 11 years ago

10.1186/1471-2105-12-209

Multiple testing for gene sets from microarray experiments
Cited by: 6
Author(s): Insuk Sohn, Kouros Owzar, Jong-Tae Lim, Stephen L. George, Stephanie M. Cushman, Sin‐Ho Jung
Software Mentions: 5
Published: over 13 years ago

10.3389/fpls.2015.00967

The effector repertoire of Fusarium oxysporum determines the tomato xylem proteome composition following infection
Cited by: 55
Author(s): Fleur Gawehns, Lisong Ma, Oskar Bruning, Petra M. Houterman, Sjef Boeren, Ben J. C. Cornelissen, Martijn Rep, Frank L. W. Takken
Software Mentions: 4
Published: about 9 years ago

10.1186/1475-2859-6-29

Thioredoxin reductase is a key factor in the oxidative stress response of Lactobacillus plantarum WCFS1
Cited by: 107
Author(s): L.M. Serrano, Douwe Molenaar, Michiel Wels, Bas Teusink, Peter A. Bron, Willem M. de Vos, Eddy J. Smid
Software Mentions: 4
Published: about 17 years ago

10.1371/journal.pone.0163128

Activation of Ftz-F1-Responsive Genes through Ftz/Ftz-F1 Dependent Enhancers
Cited by: 8
Author(s): Amanda Field, Jie Xiang, W. Ray Anderson, Patricia L. Graham, Leslie Pick
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-017-3672-z

Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos
Cited by: 12
Author(s): Han Rauwerda, J.F.B. Pagano, Wim C. de Leeuw, Wim A. Ensink, Ulrike Nehrdich, Mark de Jong, Martijs J. Jonker, Herman P. Spaink, Timo M. Breit
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0147151

Mother-Specific Signature in the Maternal Transcriptome Composition of Mature, Unfertilized Zebrafish Eggs
Cited by: 32
Author(s): Han Rauwerda, Paul Wackers, J.F.B. Pagano, Mark de Jong, Wim A. Ensink, R.J. Dekker, Ulrike Nehrdich, Herman P. Spaink, Martijs J. Jonker, Timo M. Breit
Software Mentions: 3
Published: almost 9 years ago

10.1186/1471-2407-8-107

Two-dimensional electrophoretic comparison of metastatic and non-metastatic human breast tumors using in vitrocultured epithelial cells derived from the cancer tissues
Cited by: 19
Author(s): Jan Vydra, Irena Selicharová, Kateřina Smutná, Miloslav Šanda, Eva Matoušková, Eva Buršíková, Markéta Prchalová, Z Velenská, David Coufal, Jiřı́ Jiráček
Software Mentions: 3
Published: over 16 years ago

10.1016/j.dib.2016.04.045

Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers
Cited by: 1
Author(s): J.F.B. Pagano, Han Rauwerda, Wim C. de Leeuw, Paul Wackers, Mark de Jong, Wim A. Ensink, R.J. Dekker, Ulrike Nehrdich, Herman P. Spaink, Martijs J. Jonker, Timo M. Breit
Software Mentions: 3
Published: about 8 years ago

10.3390/ijms19123918

Transcriptomic Characterization of Bradyrhizobium diazoefficiens Bacteroids Reveals a Post-Symbiotic, Hemibiotrophic-Like Lifestyle of the Bacteria within Senescing Soybean Nodules
Cited by: 3
Author(s): Sooyoung Franck, Kent N. Strodtman, Jing Qiu, David W. Emerich
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0145252

Confounding Factors in the Transcriptome Analysis of an In-Vivo Exposure Experiment
Cited by: 12
Author(s): Oskar Bruning, Wendy Rodenburg, Paul Wackers, Conny van Oostrom, Martijs J. Jonker, R.J. Dekker, Han Rauwerda, Wim A. Ensink, Annemieke de Vries, Timo M. Breit
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0068136

Genome-Wide Responses of Female Fruit Flies Subjected to Divergent Mating Regimes
Cited by: 8
Author(s): Dave T. Gerrard, Claudia Fricke, Dominic A. Edward, Dylan R. Edwards, Tracey Chapman
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0097089

A Range Finding Protocol to Support Design for Transcriptomics Experimentation: Examples of In-Vitro and In-Vivo Murine UV Exposure
Cited by: 7
Author(s): Oskar Bruning, Wendy Rodenburg, Conny T. van Oostrom, Martijs J. Jonker, Mark de Jong, R.J. Dekker, Han Rauwerda, Wim A. Ensink, Annemieke de Vries, Timo M. Breit
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0092434

Discovery of a Strongly-Interrelated Gene Network in Corals under Constant Darkness by Correlation Analysis after Wavelet Transform on Complex Network Model
Cited by: 3
Author(s): Longlong Liu, Jing Qu, Xiangqian Zhou, Xuefeng Li, Zhaobao Zhang, Xumin Wang, Tao Liu, Guiming Liu
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-244X-8-29

Application of microarray outlier detection methodology to psychiatric research
Cited by: 11
Author(s): Carl Ernst, Alexandre Bureau, Gustavo Turecki
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2156-9-34

Overexpression of Scg5 increases enzymatic activity of PCSK2 and is inversely correlated with body weight in congenic mice
Cited by: 16
Author(s): Charles R. Farber, James L. Chitwood, Sang‐Nam Lee, Ricardo A. Verdugo, Alma Islas–Trejo, Gonzalo Rincón, Iris Lindberg, Juan F. Medrano
Software Mentions: 1
Published: over 16 years ago