Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: maSigPro

https://packages.ecosyste.ms/registries/bioconductor.org/packages/maSigPro

Significant Gene Expression Profile Differences in Time Course Gene Expression Data
1 version
Latest release: 11 months ago
70,320 downloads total

Papers Mentioning maSigPro 119

10.1111/j.1365-313X.2008.03730.x

Molecular processes underlying the floral transition in the soybean shoot apical meristem
Cited by: 54
Author(s): Chui Eng Wong, Mohan B. Singh, Prem L. Bhalla
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2164-14-568

Global expression profiling reveals genetic programs underlying the developmental divergence between mouse and human embryogenesis
Cited by: 44
Author(s): Xue Lü, Jinyang Cai, Jian Ma, Zan Huang, Mingxiong Guo, Longsheng Fu, Yun‐Bo Shi, Wenxin Li
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0089648

Whole CMV Proteome Pattern Recognition Analysis after HSCT Identifies Unique Epitope Targets Associated with the CMV Status
Cited by: 17
Author(s): Lena Pérez-Bercoff, Davide Valentini, Simani Gaseitsiwe, Shahnaz Mahdavifar, Mike Schutkowski, Thomas Poiret, Åsa Pérez-Bercoff, Per Ljungman, Markus Maeurer
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2021.634226

Environmental Plasticity of the RNA Content of Staphylococcus aureus Extracellular Vesicles
Cited by: 17
Author(s): Brenda Silva Rosa da Luz, Aurélie Nicolas, Svetlana Chabelskaya, Vinícius de Rezende Rodovalho, Yves Le Loir, Vasco Azevedo, Brice Felden, Éric Guédon
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-54780-0

Transcriptomic responses in mouse blood during the first week after in vivo gamma irradiation
Cited by: 12
Author(s): Sunirmal Paul, Norman J. Kleiman, Sally A. Amundson
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2229-14-78

Circadian oscillatory transcriptional programs in grapevine ripening fruits
Cited by: 32
Author(s): Pablo Carbonell‐Bejerano, Virginia Rodríguez, C. Royo, Silvia Hernáiz, Luis Carlos Moro-González, Montserrat Torres-Viñals, José M. Martínez‐Zapater
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2105-10-S6-S9

Functional assessment of time course microarray data
Cited by: 19
Author(s): María José Nueda, Patricia Sebastián, Sonia Tarazona, Francisco García‐García, Joaquı́n Dopazo, Alberto Ferrer, Ana Conesa
Software Mentions: 1
Published: over 15 years ago

10.1523/JNEUROSCI.0993-19.2019

Microglia Actively Remodel Adult Hippocampal Neurogenesis through the Phagocytosis Secretome
Cited by: 184
Author(s): Irune Díaz-Aparicio, Iñaki Paris, Virginia Sierra-Torre, Ainhoa Plaza-Zabala, Noelia Rodríguez-Iglesias, Mar Márquez-Ropero, Sol Beccari, Paloma Huguet, Oihane Abiega, Elena Alberdi, Carlos Matute, Irantzu Bernales, Angela Schulz, Lilla Otrokocsi, Beáta Sperlágh, Kaisa E. Happonen, Greg Lemke, Mirjana Maletić-Savatić, Jorge Valero, Amanda Sierra
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-92672-4

A method to analyze time expression profiles demonstrated in a database of chili pepper fruit development
Cited by: 4
Author(s): Christian Escoto-Sandoval, Alan Flores-Díaz, M. Humberto Reyes-Valdés, Neftalí Ochoa-Alejo, Octavio Martínez
Software Mentions: 1
Published: about 3 years ago

10.1038/s41398-019-0507-5

Metabolomic signature of exposure and response to citalopram/escitalopram in depressed outpatients
Cited by: 47
Author(s): Sudeepa Bhattacharyya, Ahmed T. Ahmed, Matthias Arnold, Duan Liu, Cheng Luo, Hongjie Zhu, Siamak MahmoudianDehkordi, Drew Neavin, Gregory Louie, Boadie W. Dunlop, Mark A. Frye, Liewei Wang, Richard M. Weinshilboum, Ranga Krishnan, A. John Rush, Rima Kaddurah‐Daouk
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2018.00578

Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative Approach
Cited by: 9
Author(s): Víctor Sánchez-Gaya, Salvador Casaní-Galdón, Manuel Ugidos, Zheng Kuang, Jane Mellor, Ana Conesa, Sonia Tarazona
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2148-10-199

Microarray analysis of a salamander hopeful monster reveals transcriptional signatures of paedomorphic brain development
Cited by: 26
Author(s): Robert B. Page, Meredith A. Boley, Jeramiah J. Smith, Srikrishna Putta, S. Randal Voss
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0109777

Dissecting the Transcriptional Response to Elicitors in Vitis vinifera Cells
Cited by: 47
Author(s): Lorena Almagro, Pablo Carbonell‐Bejerano, Sarai Belchí-Navarro, Roque Bru, José M. Martínez‐Zapater, Diego Lijavetzky, María A. Pedreño
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0102625

Post-Transcriptional Regulation of BCL2 mRNA by the RNA-Binding Protein ZFP36L1 in Malignant B Cells
Cited by: 35
Author(s): Anna Zekavati, Asghar Nasir, Amor Alcaraz, Maceler Aldrovandi, Philip Marsh, John D. Norton, John J. Murphy
Software Mentions: 1
Published: about 10 years ago

10.1186/s12870-016-0850-0

Temperature desynchronizes sugar and organic acid metabolism in ripening grapevine fruits and remodels their transcriptome
Cited by: 135
Author(s): Markus Rienth, Laurent Torregrosa, Gautier Sarah, Morgane Ardisson, Jean‐Marc Brillouet, Charles Romieu
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2229-13-123

Transcriptomic analysis highlights epigenetic and transcriptional regulation during zygotic embryo development of Pinus pinaster
Cited by: 36
Author(s): Jose J De Vega, Marta Simões, W. Walter Lorenz, Andreia S. Rodrigues, Rob Alba, Jeffrey F. D. Dean, Celia María Gonzalo Miguel
Software Mentions: 1
Published: about 11 years ago

10.14336/AD.2020.0926

Genome-Wide Screen and Validation of Microglia Pro-Inflammatory Mediators in Stroke
Cited by: 11
Author(s): Jing Wu, Zhuoze Wu, Ao-Di He, Tongmei Zhang, Ping Zhang, Jing Jin, Sisi Li, Gaigai Li, Xinyan Li, Shiqi Liang, Lei Pei, Rong Liu, Qing Tian, Ximiao He, Youming Lu, Zhouping Tang, Hao Li
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2019.00359

Time-Course Transcriptome Analysis of Gingiva-Derived Mesenchymal Stem Cells Reveals That Fusobacterium nucleatum Triggers Oncogene Expression in the Process of Cell Differentiation
Cited by: 12
Author(s): Wenyan Kang, Tianyong Sun, Di Tang, Jiannan Zhou, Qiang Feng
Software Mentions: 1
Published: over 4 years ago