Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: maSigPro
https://packages.ecosyste.ms/registries/bioconductor.org/packages/maSigPro
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
1 version
Latest release: about 1 year ago
70,320 downloads total
Papers Mentioning maSigPro 119
10.1111/j.1365-313X.2008.03730.x
Molecular processes underlying the floral transition in the soybean shoot apical meristemCited by: 54
Author(s): Chui Eng Wong, Mohan B. Singh, Prem L. Bhalla
Software Mentions: 1
Published: almost 16 years ago
10.1186/1471-2164-14-568
Global expression profiling reveals genetic programs underlying the developmental divergence between mouse and human embryogenesisCited by: 44
Author(s): Xue Lü, Jinyang Cai, Jian Ma, Zan Huang, Mingxiong Guo, Longsheng Fu, Yun‐Bo Shi, Wenxin Li
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0089648
Whole CMV Proteome Pattern Recognition Analysis after HSCT Identifies Unique Epitope Targets Associated with the CMV StatusCited by: 17
Author(s): Lena Pérez-Bercoff, Davide Valentini, Simani Gaseitsiwe, Shahnaz Mahdavifar, Mike Schutkowski, Thomas Poiret, Åsa Pérez-Bercoff, Per Ljungman, Markus Maeurer
Software Mentions: 1
Published: over 10 years ago
10.3389/fmicb.2021.634226
Environmental Plasticity of the RNA Content of Staphylococcus aureus Extracellular VesiclesCited by: 17
Author(s): Brenda Silva Rosa da Luz, Aurélie Nicolas, Svetlana Chabelskaya, Vinícius de Rezende Rodovalho, Yves Le Loir, Vasco Azevedo, Brice Felden, Éric Guédon
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-019-54780-0
Transcriptomic responses in mouse blood during the first week after in vivo gamma irradiationCited by: 12
Author(s): Sunirmal Paul, Norman J. Kleiman, Sally A. Amundson
Software Mentions: 1
Published: almost 5 years ago
10.1186/1471-2229-14-78
Circadian oscillatory transcriptional programs in grapevine ripening fruitsCited by: 32
Author(s): Pablo Carbonell‐Bejerano, Virginia Rodríguez, C. Royo, Silvia Hernáiz, Luis Carlos Moro-González, Montserrat Torres-Viñals, José M. Martínez‐Zapater
Software Mentions: 1
Published: almost 11 years ago
10.1186/1471-2105-10-S6-S9
Functional assessment of time course microarray dataCited by: 19
Author(s): María José Nueda, Patricia Sebastián, Sonia Tarazona, Francisco García‐García, Joaquı́n Dopazo, Alberto Ferrer, Ana Conesa
Software Mentions: 1
Published: over 15 years ago
10.1523/JNEUROSCI.0993-19.2019
Microglia Actively Remodel Adult Hippocampal Neurogenesis through the Phagocytosis SecretomeCited by: 184
Author(s): Irune Díaz-Aparicio, Iñaki Paris, Virginia Sierra-Torre, Ainhoa Plaza-Zabala, Noelia Rodríguez-Iglesias, Mar Márquez-Ropero, Sol Beccari, Paloma Huguet, Oihane Abiega, Elena Alberdi, Carlos Matute, Irantzu Bernales, Angela Schulz, Lilla Otrokocsi, Beáta Sperlágh, Kaisa E. Happonen, Greg Lemke, Mirjana Maletić-Savatić, Jorge Valero, Amanda Sierra
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-021-92672-4
A method to analyze time expression profiles demonstrated in a database of chili pepper fruit developmentCited by: 4
Author(s): Christian Escoto-Sandoval, Alan Flores-Díaz, M. Humberto Reyes-Valdés, Neftalí Ochoa-Alejo, Octavio Martínez
Software Mentions: 1
Published: over 3 years ago
10.1038/s41398-019-0507-5
Metabolomic signature of exposure and response to citalopram/escitalopram in depressed outpatientsCited by: 47
Author(s): Sudeepa Bhattacharyya, Ahmed T. Ahmed, Matthias Arnold, Duan Liu, Cheng Luo, Hongjie Zhu, Siamak MahmoudianDehkordi, Drew Neavin, Gregory Louie, Boadie W. Dunlop, Mark A. Frye, Liewei Wang, Richard M. Weinshilboum, Ranga Krishnan, A. John Rush, Rima Kaddurah‐Daouk
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2018.00578
Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative ApproachCited by: 9
Author(s): Víctor Sánchez-Gaya, Salvador Casaní-Galdón, Manuel Ugidos, Zheng Kuang, Jane Mellor, Ana Conesa, Sonia Tarazona
Software Mentions: 1
Published: almost 6 years ago
10.1186/1471-2148-10-199
Microarray analysis of a salamander hopeful monster reveals transcriptional signatures of paedomorphic brain developmentCited by: 26
Author(s): Robert B. Page, Meredith A. Boley, Jeramiah J. Smith, Srikrishna Putta, S. Randal Voss
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0109777
Dissecting the Transcriptional Response to Elicitors in Vitis vinifera CellsCited by: 47
Author(s): Lorena Almagro, Pablo Carbonell‐Bejerano, Sarai Belchí-Navarro, Roque Bru, José M. Martínez‐Zapater, Diego Lijavetzky, María A. Pedreño
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0102625
Post-Transcriptional Regulation of BCL2 mRNA by the RNA-Binding Protein ZFP36L1 in Malignant B CellsCited by: 35
Author(s): Anna Zekavati, Asghar Nasir, Amor Alcaraz, Maceler Aldrovandi, Philip Marsh, John D. Norton, John J. Murphy
Software Mentions: 1
Published: over 10 years ago
10.1186/s12870-016-0850-0
Temperature desynchronizes sugar and organic acid metabolism in ripening grapevine fruits and remodels their transcriptomeCited by: 135
Author(s): Markus Rienth, Laurent Torregrosa, Gautier Sarah, Morgane Ardisson, Jean‐Marc Brillouet, Charles Romieu
Software Mentions: 1
Published: over 8 years ago
10.1186/1471-2229-13-123
Transcriptomic analysis highlights epigenetic and transcriptional regulation during zygotic embryo development of Pinus pinasterCited by: 36
Author(s): Jose J De Vega, Marta Simões, W. Walter Lorenz, Andreia S. Rodrigues, Rob Alba, Jeffrey F. D. Dean, Celia María Gonzalo Miguel
Software Mentions: 1
Published: about 11 years ago
10.14336/AD.2020.0926
Genome-Wide Screen and Validation of Microglia Pro-Inflammatory Mediators in StrokeCited by: 11
Author(s): Jing Wu, Zhuoze Wu, Ao-Di He, Tongmei Zhang, Ping Zhang, Jing Jin, Sisi Li, Gaigai Li, Xinyan Li, Shiqi Liang, Lei Pei, Rong Liu, Qing Tian, Ximiao He, Youming Lu, Zhouping Tang, Hao Li
Software Mentions: 1
Published: almost 4 years ago
10.3389/fcell.2019.00359
Time-Course Transcriptome Analysis of Gingiva-Derived Mesenchymal Stem Cells Reveals That Fusobacterium nucleatum Triggers Oncogene Expression in the Process of Cell DifferentiationCited by: 12
Author(s): Wenyan Kang, Tianyong Sun, Di Tang, Jiannan Zhou, Qiang Feng
Software Mentions: 1
Published: almost 5 years ago