bioconductor: limma | Projects | Ecosyste.ms: Papers

10.3390/ijms21228759

Phylostratic Shift of Whole-Genome Duplications in Normal Mammalian Tissues towards Unicellularity Is Driven by Developmental Bivalent Genes and Reveals a Link to Cancer
Cited by: 27
Author(s): Olga V. Anatskaya, Alexander E. Vinogradov, Ninel M. Vainshelbaum, Alessandro Giuliani, Jekaterina Ērenpreisa
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-021-01935-7

GNG5 is a novel oncogene associated with cell migration, proliferation, and poor prognosis in glioma
Cited by: 6
Author(s): Wang Zhang, Zhendong Liu, Binchao Liu, Miaomiao Jiang, Yan Shi, Xian Han, Hong Shen, Na Meng, Yanbiao Wang, Zhishuai Ren, Binfeng Liu, Zhenfeng Jiang, Yanzheng Gao, Zhiguo Lin
Software Mentions: 1
Published: over 5 years ago

10.1111/cns.13273

microRNA cluster MC‐let‐7a‐1~let‐7d promotes autophagy and apoptosis of glioma cells by down‐regulating STAT3
Cited by: 14
Author(s): Zhiyong Yang, Ying Wang, Qing Liu, Ming Wu
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21239051

Kisspeptin Influences the Reproductive Axis and Circulating Levels of microRNAs in Senegalese Sole
Cited by: 15
Author(s): Catarina C Oliveira, Elvira Fatsini, Ignacio Fernández, Catarina Anjos, François Chauvigné, Joan Cerdà, Robin Mjelle, Jorge M.O. Fernandes, Elsa Cabrita
Software Mentions: 1
Published: almost 6 years ago

10.1111/cns.13109

Long noncoding RNA expression profile from cryptococcal meningitis patients identifies DPY19L1p1 as a new disease marker
Cited by: 7
Author(s): Lei Zhang, Wenjie Fang, Ke-Ming Zhang, Weiwei Jiang, Min Chen, Wanqing Liao, Weihua Pan
Software Mentions: 1
Published: over 7 years ago

10.1111/cns.13197

Combined elevation of TRIB2 and MAP3K1 indicates poor prognosis and chemoresistance to temozolomide in glioblastoma
Cited by: 28
Author(s): Jia Wang, Jie Zuo, Alafate Wahafu, Maode Wang, Rui-Chun Li, Wei Xie
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2164-9-78

Effect of thyroid hormone concentration on the transcriptional response underlying induced metamorphosis in the Mexican axolotl (Ambystoma)
Cited by: 47
Author(s): Robert B. Page, S. Randal Voss, Amy Samuels, Jeramiah J. Smith, Srikrishna Putta, Christopher K. Beachy
Software Mentions: 1
Published: over 18 years ago

10.1016/j.cjco.2020.11.019

A Comparative Analysis of the Lipoprotein(a) and Low-Density Lipoprotein Proteomic Profiles Combining Mass Spectrometry and Mendelian Randomization
Cited by: 10
Author(s): Raphaëlle Bourgeois, Arnaud Girard, Nicolas Perrot, Jakie Guertin, Patricia L. Mitchell, Christian Couture, Clarisse Gotti, Sylvie Bourassa, Paolo Poggio, Elvira Mass, Romain Capoulade, Corey A. Scipione, Audrey-Anne Després, Patrick Couture, Arnaud Droit, Philippe Pîbarot, Michael B. Boffa, Sébastien Thériault, Marlys L. Koschinsky, Patrick Mathieu, Benoît J. Arsenault
Software Mentions: 1
Published: over 5 years ago

10.1007/s10549-018-4920-x

Co-expressed genes enhance precision of receptor status identification in breast cancer patients
Cited by: 7
Author(s): Michael Kenn, Dan Cacsire Castillo‐Tong, Christian F. Singer, Michael Cibena, H. Kölbl, Wolfgang Schreiner
Software Mentions: 1
Published: about 8 years ago

10.1155/2020/3280530

MicroRNA-587 Functions as a Tumor Suppressor in Hepatocellular Carcinoma by Targeting Ribosomal Protein SA
Cited by: 8
Author(s): Miao Chen, Duo Wang, Junjie Liu, Ziyan Zhou, Zhanling Ding, Lianfeng Liu, Danke Su, Hang Li
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms22041523

Multiomics Integration in Skin Diseases with Alterations in Notch Signaling Pathway: PlatOMICs Phase 1 Deployment
Cited by: 8
Author(s): Lucas André Cavalcanti Brandão, Paola Maura Tricarico, Rossella Gratton, Almerinda Agrelli, Luisa Zupin, Haissam Abou-Saleh, Romero Marinho de Moura, Sérgio Crovella
Software Mentions: 1
Published: over 5 years ago

10.1155/2019/3629751

Integration of Gene Expression Profile Data to Verify Hub Genes of Patients with Stanford A Aortic Dissection
Cited by: 9
Author(s): Weitie Wang, Tiance Wang, Yong Wang, Hulin Piao, Bo Li, Zhicheng Zhu, Rihao Xu, Dan Li, Kexiang Liu
Software Mentions: 1
Published: over 7 years ago

10.1155/2016/7281732

Identification and Evolutionary Analysis of Potential Candidate Genes in a Human Eating Disorder
Cited by: 6
Author(s): Ubadah Sabbagh, Saman Mullegama, Gerald J. Wyckoff
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12967-020-02652-x

Extracellular vesicle-encapsulated microRNA-424 exerts inhibitory function in ovarian cancer by targeting MYB
Cited by: 20
Author(s): Ping Li, Hongyan Xin, Lili Lu
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-9-388

Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate
Cited by: 61
Author(s): Onguma Natalang, Emmanuel Bischoff, Guillaume Deplaine, Caroline Proux, Marie‐Agnès Dillies, Odile Sismeiro, Ghislaine Guigon, Serge Bonnefoy, Jintana Patarapotikul, Odile Mercereau–Puijalon, Jean‐Yves Coppée, Peter H. David
Software Mentions: 1
Published: about 18 years ago

10.1155/2020/5307641

SRCIN1 Regulated by circCCDC66/miR-211 Is Upregulated and Promotes Cell Proliferation in Non-Small-Cell Lung Cancer
Cited by: 8
Author(s): Weijun Hong, Suyun Yu, Yaqing Zhuang, Qingqing Zhang, Jiqin Wang, Xiwen Gao
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms22105225

Distinct Concentration-Dependent Molecular Pathways Regulate Bone Cell Responses to Cobalt and Chromium Exposure from Joint Replacement Prostheses
Cited by: 4
Author(s): Karan M. Shah, Mark J. Dunning, Alison Gartland, JM Wilkinson
Software Mentions: 1
Published: over 5 years ago

10.1155/2014/498318

Development and Maturation of the Immune System in Preterm Neonates: Results from a Whole Genome Expression Study
Cited by: 13
Author(s): Magdalena Zasada, Przemko Kwinta, Wojciech Durlak, Mirosław Bik-Multanowski, Anna Madetko‐Talowska, Jacek J Pietrzyk
Software Mentions: 1
Published: almost 13 years ago

10.3390/ijms22115547

Mutant p53 Mediates Sensitivity to Cancer Treatment Agents in Oesophageal Adenocarcinoma Associated with MicroRNA and SLC7A11 Expression
Cited by: 7
Author(s): Ann-Kathrin Eichelmann, George C. Mayne, Karen Chiam, Steven L. Due, Isabell Bastian, Frederike Butz, Tingting Wang, Pamela J. Sykes, Nicholas J. Clemons, David S. Liu, Michael Michael, Christos S. Karapetis, Richard Hummel, David I. Watson, Damian J. Hussey
Software Mentions: 1
Published: over 5 years ago

10.1186/s12967-021-02915-1

ELK4 promotes the development of gastric cancer by inducing M2 polarization of macrophages through regulation of the KDM5A-PJA2-KSR1 axis
Cited by: 20
Author(s): Lei Zheng, Hongmei Xu, Yunsong Di, Lanlan Chen, Jiao Liu, Liying Kang, Lian Gao
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22158205

Identification of an IL-22-Dependent Gene Signature as a Pharmacodynamic Biomarker
Cited by: 1
Author(s): Julie Rae, Jason A. Hackney, Kevin Huang, Mary E. Keir, Ann Herman
Software Mentions: 1
Published: about 5 years ago

10.1155/2015/760698

Profiling of Selected MicroRNAs in Proliferative Eutopic Endometrium of Women with Ovarian Endometriosis
Cited by: 36
Author(s): Piotr Laudański, Radosław Charkiewicz, Agnieszka Tołwińska, Jacek Szamatowicz, Angelika Edyta Charkiewicz, Jacek Nikliński
Software Mentions: 1
Published: almost 12 years ago

10.1155/2020/5637864

Mining miRNAs’ Expressions in Glioma Based on GEO Database and Their Effects on Biological Functions
Cited by: 2
Author(s): Ké Li, Qi Zhang, Duan Niu, Hailong Xing
Software Mentions: 1
Published: about 6 years ago

10.1155/2020/7283581

Identification of Key Genes of Human Advanced Diabetic Nephropathy Independent of Proteinuria by Transcriptome Analysis
Cited by: 3
Author(s): Fei Cai, Xu‐jie Zhou, Yan Jia, Weijian Yao, Jicheng Lv, Gang Liu, Li Yang
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/1840415

Identification, Validation, and Functional Annotations of Genome-Wide Profile Variation between Melanocytic Nevus and Malignant Melanoma
Cited by: 6
Author(s): Wei Han, Wenhao Xu, Jianxiong Wang, Jia-Min Hou, Hai-Liang Zhang, Xiaoyu Zhao, Ge Shen
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms221910819

Transcriptome Analyses Identify Potential Key microRNAs and Their Target Genes Contributing to Ovarian Reserve
Cited by: 1
Author(s): Yoon Young Kim, Kwang S. Kim, Yong Jin Kim, Sung Woo Kim, Hoon Kim, Seung‐Yup Ku
Software Mentions: 1
Published: about 5 years ago

10.1155/2018/9482726

Integration of Gene Expression Profile Data to Screen and Verify Hub Genes Involved in Osteoarthritis
Cited by: 20
Author(s): Zhaoyan Li, Qingyu Wang, Gaoyang Chen, Xin Li, Qiwei Yang, Zhenwu Du, Mingchun Ren, Yang Song, Guizhen Zhang
Software Mentions: 1
Published: about 8 years ago

10.1111/jne.12339

Decreased Npas4 and Arc <scp>mRNA</scp> Levels in the Hippocampus of Aged Memory‐Impaired Wild‐Type But Not Memory Preserved 11β‐<scp>HSD</scp>1 Deficient Mice
Cited by: 20
Author(s): Jing Qiu, Donald R. Dunbar, June Noble, Carolynn Cairns, Rod Carter, Val Kelly, Karen Chapman, Jonathan R. Seckl, Joyce L.W. Yau
Software Mentions: 1
Published: almost 11 years ago

10.3390/nu10050547

A Vitamin E-Enriched Antioxidant Diet Interferes with the Acute Adaptation of the Liver to Physical Exercise in Mice
Cited by: 8
Author(s): Miriam Hoene, Martin Irmler, Johannes Beckers, Martin Hrabé de Angelis, Hans‐Ulrich Häring, Cora Weigert
Software Mentions: 1
Published: over 8 years ago

10.1155/2017/8589347

Screening for Key Pathways Associated with the Development of Osteoporosis by Bioinformatics Analysis
Cited by: 2
Author(s): Yanqing Liu, Yueqiu Wang, Yanxia Zhang, Yong Li, Hongfei Xiang, Xiaojin Peng, Bohua Chen, Guyou Jia
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12974-018-1386-z

The atypical RhoGTPase RhoE/Rnd3 is a key molecule to acquire a neuroprotective phenotype in microglia
Cited by: 10
Author(s): Veronika E. Neubrand, Irene Forte-Lago, Marta Caro, Mario Delgado
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12974-017-0825-6

Astrocyte-specific overexpressed gene signatures in response to methamphetamine exposure in vitro
Cited by: 29
Author(s): Nikki Bortell, Liana V. Basova, Svetlana Semenova, Howard S. Fox, Timothy Ravasi, Maria Cecília Garibaldi Marcondes
Software Mentions: 1
Published: over 9 years ago

10.1186/s12967-019-02148-3

Identification of key genes in invasive clinically non-functioning pituitary adenoma by integrating analysis of DNA methylation and mRNA expression profiles
Cited by: 17
Author(s): Sen Cheng, Weiyan Xie, Yun‐gen Miao, Jing Guo, Jichao Wang, Chuzhong Li, Yazhou Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1523/JNEUROSCI.1511-19.2019

Gamma Visual Stimulation Induces a Neuroimmune Signaling Profile Distinct from Acute Neuroinflammation
Cited by: 33
Author(s): Kristie M. Garza, Lu Zhang, Ben Borron, Levi B. Wood, Annabelle C. Singer
Software Mentions: 1
Published: almost 7 years ago

10.1155/2020/4516349

Bioinformatic Analysis of Neuroimmune Mechanism of Neuropathic Pain
Cited by: 11
Author(s): Yu Hao, Yang Liu, Chao Li, Jianhao Wang, Bo Yu, Wu Qiang, Ziqian Xiang, Shiqing Feng
Software Mentions: 1
Published: about 6 years ago

10.1155/2021/9956078

RSV Promotes Epithelial Neuroendocrine Phenotype Differentiation through NODAL Signaling Pathway
Cited by: 3
Author(s): Dan Liŭ, Zhongxiang Tang, Kezi Qiu, Ousman Bajinka, Lili Wang, Ling Qin, Yurong Tan
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/1028158

Development and Validation of an Autophagy-Related Signature for Head and Neck Squamous Cell Carcinoma
Cited by: 3
Author(s): Chang Liu, Wenling Wu, Meng Xu, Jing-Lin Mi, Longjiang Xu, Rensheng Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s40364-018-0141-z

Dysregulated transcriptional networks in KMT2A- and MLLT10-rearranged T-ALL
Cited by: 9
Author(s): Huining Kang, Nitesh Sharma, Christian K. Nickl, Meenakshi Devidas, Mignon L. Loh, Stephen P. Hunger, Kimberly P. Dunsmore, Stuart S. Winter, Ksenia Matławska-Wasowska
Software Mentions: 1
Published: about 8 years ago

10.3390/biology10090939

HuD Regulates mRNA-circRNA-miRNA Networks in the Mouse Striatum Linked to Neuronal Development and Drug Addiction
Cited by: 7
Author(s): Michela Dell’Orco, Amir Elyaderani, Annika Vannan, Shobana Sekar, Gregory L. Powell, Winnie S. Liang, Janet L. Neisewander, Nora I. Perrone‐Bizzozero
Software Mentions: 1
Published: about 5 years ago

10.3390/biology10070609

Human Trisomic iPSCs from Down Syndrome Fibroblasts Manifest Mitochondrial Alterations Early during Neuronal Differentiation
Cited by: 11
Author(s): Nunzia Mollo, M. Esposito, Miriam Aurilia, Roberta Scognamiglio, Rossella Accarino, Ferdinando Bonfiglio, Rita Cicatiello, Maria Charalambous, Claudio Procaccini, Teresa Micillo, Rita Genesio, Gaetano Calı̀, Agnese Secondo, Simona Paladino, Giuseppe Matarese, Gabriella De Vita, Anna Conti, Lucio Nitsch, Antonella Izzo
Software Mentions: 1
Published: over 5 years ago

10.3390/biology10030221

Gene Co-Expression Analysis of Human RNASEH2A Reveals Functional Networks Associated with DNA Replication, DNA Damage Response, and Cell Cycle Regulation
Cited by: 3
Author(s): Stefania Marsili, Ailone Tichon, Deepali L. Kundnani, Francesca Storici
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-14-861

The role of Dichaete in transcriptional regulation during Drosophila embryonic development
Cited by: 32
Author(s): J. Aleksić, Enrico Ferrero, Bettina Fischer, Shih Pei Shen, Steven Russell
Software Mentions: 1
Published: almost 13 years ago

10.1186/2042-6410-5-8

The effects of perinatal testosterone exposure on the DNA methylome of the mouse brain are late-emerging
Cited by: 105
Author(s): Negar Ghahramani, Tuck C Ngun, Pao‐Yang Chen, Yuan Tian, Sangitha Krishnan, Stephanie Muir, Liudmilla Rubbi, Arthur P. Arnold, Geert J. De Vries, Nancy G. Forger, Matteo Pellegrini, Éric Vilain
Software Mentions: 1
Published: over 12 years ago

10.1186/s13293-017-0149-3

Sex differences in microRNA-mRNA networks: examination of novel epigenetic programming mechanisms in the sexually dimorphic neonatal hypothalamus
Cited by: 25
Author(s): Christopher P. Morgan, Tracy L. Bale
Software Mentions: 1
Published: about 9 years ago

10.1186/s13293-018-0213-7

Sex-related DNA methylation differences in B cell chronic lymphocytic leukemia
Cited by: 23
Author(s): Shuchun Lin, Yun Liu, Lynn R. Goldin, Chao Lyu, Xiangyin Kong, Yan Zhang, Neil E. Caporaso, Song Xiang, Ying Gao
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40659-018-0175-6

Bioinformatics analysis of microarray data to reveal the pathogenesis of diffuse intrinsic pontine glioma
Cited by: 16
Author(s): Wei Li, Fei He, Wen Zhang, Wenhua Chen, Bo Yu
Software Mentions: 1
Published: about 8 years ago

10.1186/s40659-017-0108-9

Analysis of gene expression changes associated with human carcinoma-associated fibroblasts in non-small cell lung carcinoma
Cited by: 16
Author(s): Xiaofen Wu, Lei Ruan, Yi Yang, Qi Mei
Software Mentions: 1
Published: over 9 years ago

10.1155/2020/4728947

An Autophagy-Related Long Noncoding RNA Signature Contributes to Poor Prognosis in Colorectal Cancer
Cited by: 35
Author(s): Jingsun Wei, Xin Ge, Yang Tang, Yuntao Qian, Wei Lu, Kai Jiang, Yunxia Fang, Maxwell Hwang, Dongliang Fu, Qian Xiao, Kefeng Ding
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.biopsych.2021.03.009

Developmental Profile of Psychiatric Risk Associated With Voltage-Gated Cation Channel Activity
Cited by: 10
Author(s): Nicholas E. Clifton, Leonardo Collado‐Torres, Emily E. Burke, Antonio F. Pardiñas, Janet Harwood, Arianna Di Florio, James Walters, Michael John Owen, Daniel R. Weinberger, Peter Holmans, Andrew E. Jaffe, Jérémy Hall
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/5193913

Identification of Differentially Expressed Circular RNAs as miRNA Sponges in Lung Adenocarcinoma
Cited by: 4
Author(s): Yuechao Liu, Xin Wang, Lulu Bi, Hongbo Huo, Yan Shi, Yimeng Cui, Yaowen Cui, Ruixue Gu, Dexin Jia, Shuai Zhang, Li Cai, Xiaomei Li, Ying Xing
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/6610511

Osthole Inhibits Breast Cancer Progression through Upregulating Tumor Suppressor GNG7
Cited by: 11
Author(s): Jie Mei, Zhihui Wang, Shaojie Zhao, Yan Zhang
Software Mentions: 1
Published: over 5 years ago

10.1242/bio.027391

miR-9a mediates the role of Lethal giant larvae as an epithelial growth inhibitor in Drosophila
Cited by: 5
Author(s): Scott G. Daniel, Atlantis Dawn Russ, Kathryn M. Guthridge, Ammad Raina, Patricia S. Estes, Linda M. Parsons, Helena E. Richardson, Joyce A. Schroeder, Daniela C. Zarnescu
Software Mentions: 1
Published: almost 10 years ago

10.6026/97320630017348

Molecular docking analysis of stachydrine and sakuranetin with IL-6 and TNF-α in the context of inflammation
Cited by: 12
Author(s): Inamul Hasan Madar, Ghazala Sultan, Iftikhar Aslam Tayubi, Atif Noorul Hasan, Bandana Pahi, Anjali Rai, Pravitha Kasu Sivanandan, Tamizhini Loganathan, M. Yasmin Begum, Sneha Rai
Software Mentions: 1
Published: over 5 years ago

10.1016/j.isci.2021.102676

A human multi-cellular model shows how platelets drive production of diseased extracellular matrix and tissue invasion
Cited by: 26
Author(s): Beatrice Malacrida, Sam Nichols, Eleni Maniati, Roanne R. Jones, Robin Delanie-Smith, Reza Roozitalab, Eleanor J. Tyler, Morgan Thomas, Gina Boot, Jonas Mackerodt, Michelle Lockley, Martin M. Knight, Frances R. Balkwill, Oliver M.T. Pearce
Software Mentions: 1
Published: over 5 years ago

10.6026/97320630015853

Genomic profiling of Nipah virus using NGS driven RNA-Seq expression data
Cited by: 1
Author(s): Zakiul Hassan, Shakil Ahmed, Md Marufuzzaman Khan, Mohammad Ahsan Uddin, Fahmida Chowdhury, Md. Kamruzzaman
Software Mentions: 1
Published: almost 7 years ago

10.1093/bioinformatics/btz256

Hybrid analysis of gene dynamics predicts context-specific expression and offers regulatory insights
Cited by: 2
Author(s): Justin D. Finkle, Neda Bagheri
Software Mentions: 1
Published: over 7 years ago

10.1186/s13048-021-00864-3

CXCL2-mediated ATR/CHK1 signaling pathway and platinum resistance in epithelial ovarian cancer
Cited by: 5
Author(s): Song Nie, Yicong Wan, Hui Wang, Jinhui Liu, Jing Yang, Rui Sun, Hua Meng, Xiaolin Ma, Yi Jiang, Wenjun Cheng
Software Mentions: 1
Published: about 5 years ago

10.1186/s13048-021-00794-0

Identification of potential markers for differentiating epithelial ovarian cancer from ovarian low malignant potential tumors through integrated bioinformatics analysis
Cited by: 3
Author(s): Wende Hao, Hongyu Zhao, Zhefeng Li, Jie Li, Jiahao Guo, Qi Chen, Yan Gao, Meng Ren, Xiaoting Zhao, Wentao Yue
Software Mentions: 1
Published: over 5 years ago

10.1186/s13048-021-00837-6

Integrative analysis of key candidate genes and signaling pathways in ovarian cancer by bioinformatics
Cited by: 5
Author(s): Cuicui Dong, Xiaohui Tian, Fucheng He, Jiayi Zhang, Xiaohui Cui, Qiaojun He, Ping Si, Yongming Shen
Software Mentions: 1
Published: over 5 years ago

10.1186/s13048-018-0399-7

Deregulation of the spindle assembly checkpoint is associated with paclitaxel resistance in ovarian cancer
Cited by: 25
Author(s): Taryne Chong, Amila Sarac, Cindy Q. Yao, Linda M. Liao, Nicola Lyttle, Paul C. Boutros, John M.S. Bartlett, Melanie Spears
Software Mentions: 1
Published: over 8 years ago

10.1186/1757-2215-6-24

Small SSEA-4-positive cells from human ovarian cell cultures: related to embryonic stem cells and germinal lineage?
Cited by: 37
Author(s): Irma Virant‐Klun, Martin Štimpfel, Branko Cvjetičanin, Eda Vrtačnik-Bokal, Thomas Skutella
Software Mentions: 1
Published: almost 14 years ago

10.1186/1757-2215-6-88

Gene-gene interaction network analysis of ovarian cancer using TCGA data
Cited by: 18
Author(s): Huanchun Ying, Jing Lv, Tianshu Ying, Shanshan Jin, Junfeng Shao, Lili Wang, Huibin Xu, Bin Yuan, Qing Yang
Software Mentions: 1
Published: almost 14 years ago

10.18632/oncotarget.6548

Combinatorial drug screening and molecular profiling reveal diverse mechanisms of intrinsic and adaptive resistance to BRAF inhibition in V600E BRAF mutant melanomas
Cited by: 19
Author(s): Devin G. Roller, Brian J. Capaldo, Stefan Bekiranov, Aaron J. Mackey, Mark R. Conaway, Emanuel F. Petricoin, Daniel Gioeli, Michael J. Weber
Software Mentions: 1
Published: almost 11 years ago

10.18632/oncotarget.6667

In silico pathway analysis in cervical carcinoma reveals potential new targets for treatment
Cited by: 18
Author(s): Peter van Dam, Pieter-Jan H.H. van Dam, Christian Rolfo, Marco Giallombardo, Christophe Van Berckelaer, Xuan Bich Trinh, Sevilay Altıntaş, Manon Huizing, Κonstantina Papadimitriou, Wiebren Tjalma, Steven Van Laere
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-14-631

Efficient utilization of aerobic metabolism helps Tibetan locusts conquer hypoxia
Cited by: 27
Author(s): Dejian Zhao, Zhenyu Zhang, Arianne Cease, Jon F. Harrison, Le Kang
Software Mentions: 1
Published: about 13 years ago

10.18632/oncotarget.6978

CTNNA3is a tumor suppressor in hepatocellular carcinomas and is inhibited by miR-425
Cited by: 38
Author(s): Bing He, Ting Li, Lei Guan, Fange Liu, Xuemei Chen, Jing Zhao, Lin Song, Zhizhen Liu, Huqin Zhang
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.6985

Common and distinct features of mammary tumors driven by Pten-deletion or activating Pik3ca mutation
Cited by: 10
Author(s): Jeff C. Liu, Dong‐Yu Wang, Sean E. Egan, Eldad Zacksenhaus
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.7398

Gamabufotalin triggers c-Myc degradation via induction of WWP2 in multiple myeloma cells
Cited by: 20
Author(s): Zhenlong Yu, Tao Li, Chao Wang, Sa Deng, Baojing Zhang, Xiaokui Huo, Bo Zhang, Xiaobo Wang, Yuanyuan Zhong, Xiaochi Ma
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-13-305

De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system
Cited by: 34
Author(s): Mark P. Peterson, Danielle J. Whittaker, Shruthi Ambreth, Suhas Sureshchandra, Aaron Buechlein, Ram Podicheti, Jeong-Hyeon Choi, Zhao Lai, Keithanne Mockatis, John K. Colbourne, Haixu Tang, Ellen D. Ketterson
Software Mentions: 1
Published: almost 15 years ago

10.18632/oncotarget.8623

Human mesenchymal stromal cell-secreted lactate induces M2-macrophage differentiation by metabolic reprogramming
Cited by: 110
Author(s): Silvia Selleri, Panojot Bifsha, Sara Civini, Consiglia Pacelli, Mame Massar Dieng, William Lemieux, Ping Jin, Renée Bazin, Natacha Patey, Francesco M. Marincola, Florina Moldovan, Charlotte Zaouter, Louis-Éric Trudeau, Basma Benabdhalla, Isabelle Louis, Christian Beauséjour, David F. Stroncek, Françoise Le Deist, Élie Haddad
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.8458

MicroRNA-375/SEC23A as biomarkers of the in vitro efficacy of vandetanib
Cited by: 40
Author(s): Sandra Lassalle, Joséphine Zangari, Alexandra Popa, Marius Ilié, Véronique Hofman, Élodie Long, Martine Patey, Frédérique Tissier, Geneviève Belleannée, H Trouette, Bogdan Catargi, Isabelle Peyrottes, Jean–Louis Sadoul, Olivier Bordone, Christelle Bonnetaud, Catherine Butori, Alexandre Bozec, N. Guevara, J. Santini, Imène Sarah Hénaoui, G. Lemaire, Olivier Blanck, Philippe Vielh, Pascal Barbry, Bernard Mari, Patrick Brest, Paul Hofman
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.9019

microRNA-802/Rnd3 pathway imposes on carcinogenesis and metastasis of fine particulate matter exposure
Cited by: 30
Author(s): Xiaobo Li, Yang Lv, Na Gao, Hao Sun, Runze Lu, Hongbao Yang, Chengcheng Zhang, Qingtao Meng, Shenshen Wu, Aiqun Li, Yankai Xia, Rui Chen
Software Mentions: 1
Published: over 10 years ago

10.3390/nu11020232

β-Cryptoxanthin Reduces Body Fat and Increases Oxidative Stress Response in Caenorhabditis elegans Model
Cited by: 18
Author(s): Silvia Llopis, María Jesús Rodrigo, Núria González, Salvador Genovés, Lorenzo Zacarı́as, Daniel Ramón, Patricia Martorell
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.9978

Role of microRNA-4516 involved autophagy associated with exposure to fine particulate matter
Cited by: 33
Author(s): Xiaobo Li, Yang Lv, Jihong Hao, Hao Sun, Na Gao, Chengcheng Zhang, Runze Lu, Shizhi Wang, Lihong Ye, Yuepu Pu, Rui Chen
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.10022

CCI-007, a novel small molecule with cytotoxic activity against infant leukemia with MLL rearrangements
Cited by: 10
Author(s): Klaartje Somers, Daria A. Chudakova, Shiloh Middlemiss, Victoria W. Wen, Molly Clifton, Alan Kwek, Bing Liu, Chelsea Mayoh, Angelika Bongers, Mawar Karsa, Sukey Pan, Sarah Cruikshank, Marissa J. Scandlyn, Wendi Hoang, Toshihiko Imamura, Ursula R. Kees, Andrei V. Gudkov, Olga B. Chernova, Michelle Haber, Murray D. Norris, Michelle J. Henderson
Software Mentions: 1
Published: over 10 years ago

Projects: bioconductor: limma

Science Score: 78/100

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Papers Mentioning limma 7,776