bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1097/MD.0000000000014074

Identification of key regulators of pancreatic ductal adenocarcinoma using bioinformatics analysis of microarray data
Cited by: 5
Author(s): Nan Li, Xin Zhao, Shengyi You
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-7-261

Empirical array quality weights in the analysis of microarray data
Cited by: 270
Author(s): Matthew E. Ritchie, Dileepa S. Diyagama, Jody Neilson, Ryan K. van Laar, Alexander Dobrovic, Andrew Holloway, Gordon K. Smyth
Software Mentions: 1
Published: over 20 years ago

10.1186/s12920-021-00885-3

A novel prognostic prediction model based on seven immune-related RNAs for predicting overall survival of patients in early cervical squamous cell carcinoma
Cited by: 7
Author(s): Rui Qin, Lu Cao, Cong Ye, Junrong Wang, Ziqian Sun
Software Mentions: 1
Published: over 5 years ago

10.1080/21623945.2019.1649578

Identification of biomarkers, pathways and potential therapeutic agents for white adipocyte insulin resistance using bioinformatics analysis
Cited by: 16
Author(s): Yemin Zhang, Yuyang Zheng, Yalin Fu, Changhua Wang
Software Mentions: 1
Published: over 7 years ago

10.1186/1755-8794-7-35

A systems biology approach to understand the pathophysiological mechanisms of cardiac pathological hypertrophy associated with rosiglitazone
Cited by: 18
Author(s): Lars Verschuren, Peter Y. Wielinga, Thomas Kelder, Marijana Radonjić, Kanita Salic, Robert Kleemann, Ben van Ommen, Teake Kooistra
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pcbi.1003572

Contribution of Network Connectivity in Determining the Relationship between Gene Expression and Metabolite Concentration Changes
Cited by: 62
Author(s): Aleksej Zelezniak, Steven D. Sheridan, Kiran Raosaheb Patil
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0086137

Gene Expression Profiling and Secretome Analysis Differentiate Adult-Derived Human Liver Stem/Progenitor Cells and Human Hepatic Stellate Cells
Cited by: 49
Author(s): Silvia Berardis, Catherine Lombard, Jonathan Evraerts, Adil El Taghdouini, Valérie Rosseels, Pau Sancho‐Bru, Juan José Lozano, Leo A. van Grunsven, Étienne Sokal, Mustapha Najimi
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0139285

Bioinformatics Analyses of the Role of Vascular Endothelial Growth Factor in Patients with Non-Small Cell Lung Cancer
Cited by: 13
Author(s): Ying Wang, Lu Huang, Shuqiang Wu, Yongshi Jia, Yunmei Yang, Limin Luo, Aihong Bi, Min Fang
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2105-10-45

Comparison of small n statistical tests of differential expression applied to microarrays
Cited by: 75
Author(s): Carl Murie, Owen Z. Woody, Anna Y. Lee, Robert Nadon
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2105-9-409

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
Cited by: 121
Author(s): Johan Staaf, Johan Vallon‐Christersson, David Lindgren, Gunnar Juliusson, Richard Rosenquist, Mattias Höglund, Åke Borg, Markus Ringnér
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0189780

Multigenic DNA vaccine induces protective cross-reactive T cell responses against heterologous influenza virus in nonhuman primates
Cited by: 22
Author(s): Merika Treants Koday, Jolie A. Leonard, Paul V. Munson, Adriana Forero, Michael Koday, Debra Bratt, James T. Fuller, Robert D. Murnane, Shulin Qin, Todd A. Reinhart, Karen Duus, Ilhem Messaoudi, Amy L. Hartman, Kelly Stefano-Cole, Juliet Morrison, Michael G. Katze, Deborah H. Fuller
Software Mentions: 1
Published: almost 9 years ago

10.3389/fonc.2021.592393

Clinical and Genetic Predictive Models for the Prediction of Pathological Complete Response to Optimize the Effectiveness for Trastuzumab Based Chemotherapy
Cited by: 1
Author(s): Lun Li, Min Chen, Shuyue Zheng, Hanlu Li, Weiru Chi, Bingqiu Xiu, Qi Zhang, Jian Hou, Wang Jia, Jiong Wu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0225137

Investigating gene expression profiles of whole blood and peripheral blood mononuclear cells using multiple collection and processing methods
Cited by: 38
Author(s): Aarti Gautam, Duncan Donohue, Allison Hoke, Stacy Ann Miller, Seshamalini Srinivasan, Bintu Sowe, Leanne Detwiler, Jesse Lynch, Michael W. Levangie, Rasha Hammamieh, Marti Jett
Software Mentions: 1
Published: almost 7 years ago

10.3389/fonc.2021.700084

A New Prognostic Risk Signature of Eight Ferroptosis-Related Genes in the Clear Cell Renal Cell Carcinoma
Cited by: 8
Author(s): Ji Chen, Yating Zhan, Rongrong Zhang, Bin Chen, Junting Huang, Chunxue Li, Wenjie Zhang, Yajing Wang, Yuxiang Gao, Jianjian Zheng, Yeping Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s12920-020-00744-7

Long non-coding RNA profiling of pediatric Medulloblastoma
Cited by: 14
Author(s): Varun Kesherwani, Mamta Shukla, Donald W. Coulter, John Sharp, Shantaram S. Joshi, Nagendra K. Chaturvedi
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0117963

Proteomic Analysis of Mitochondrial-Associated ER Membranes (MAM) during RNA Virus Infection Reveals Dynamic Changes in Protein and Organelle Trafficking
Cited by: 86
Author(s): Stacy M. Horner, Courtney Wilkins, Samantha Badil, Jason A. Iskarpatyoti, Michael Gale
Software Mentions: 1
Published: over 11 years ago

10.1186/s12859-015-0808-5

Practical impacts of genomic data “cleaning” on biological discovery using surrogate variable analysis
Cited by: 50
Author(s): Andrew E. Jaffe, Thomas M. Hyde, Joel E. Kleinman, Daniel R. Weinbergern, Joshua G. Chenoweth, Ronald D.G. McKay, Jeffrey T. Leek, Carlo Colantuoni
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0034969

Assessment of Chitosan-Affected Metabolic Response by Peroxisome Proliferator-Activated Receptor Bioluminescent Imaging-Guided Transcriptomic Analysis
Cited by: 13
Author(s): Chia‐Hung Kao, Chien-Yun Hsiang, Tin-Yun Ho
Software Mentions: 1
Published: over 14 years ago

10.3389/fonc.2021.608113

Integrative Analysis of the Expression of SIGLEC Family Members in Lung Adenocarcinoma via Data Mining
Cited by: 5
Author(s): Haiyan Zhang, Yong-Fei Xie, Hu Zhang, Hong Yu, Xiang Xie, Yingchun Ye, Wangyang Xu, Siji Nian, Qing Yuan
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/4728947

An Autophagy-Related Long Noncoding RNA Signature Contributes to Poor Prognosis in Colorectal Cancer
Cited by: 35
Author(s): Jingsun Wei, Xin Ge, Yang Tang, Yuntao Qian, Wei Lu, Kai Jiang, Yunxia Fang, Maxwell Hwang, Dongliang Fu, Qian Xiao, Kefeng Ding
Software Mentions: 1
Published: almost 6 years ago

10.3390/jpm11020107

Potential Role of miRNAs in the Acquisition of Chemoresistance in Neuroblastoma
Cited by: 7
Author(s): Barbara Marengo, Alessandra Pulliero, Maria Valeria Corrias, Riccardo Leardi, Emanuele Farinini, Gilberto Fronza, Paola Menichini, Lorenzo Monteleone, Giulia Elda Valenti, Andrea Speciale, Patrizia Perri, Francesca Madia, Alberto Izzotti, Cinzia Domenicotti
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0013319

Age and Diet Affect Gene Expression Profiles in Canine Liver Tissue
Cited by: 17
Author(s): Dong Yong Kil, Brittany M. Vester Boler, Carolyn J. Apanavicius, Lawrence B. Schook, Kelly S. Swanson
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2105-9-S4-S9

Reconstructing networks of pathways via significance analysis of their intersections
Cited by: 29
Author(s): Mirko Francesconi, Daniel Remondini, Nicola Neretti, John M. Sedivy, Leon N. Cooper, E. Verondini, Luciano Milanesi, Gastone Castellani
Software Mentions: 1
Published: over 18 years ago

10.1186/s12859-021-04197-2

Hypergraph models of biological networks to identify genes critical to pathogenic viral response
Cited by: 29
Author(s): Song Feng, Emily Heath, Brett Jefferson, Cliff Joslyn, Henry Kvinge, Hugh D. Mitchell, Brenda Praggastis, Amie J. Eisfeld, Amy C. Sims, Larissa B. Thackray, Shufang Fan, Kevin B. Walters, Peter Halfmann, Danielle Westhoff-Smith, Qing Tan, Vineet D. Menachery, Timothy P. Sheahan, Adam S. Cockrell, Jacob Kocher, Kelly G. Stratton, Natalie C. Heller, Lisa Bramer, Michael S. Diamond, Ralph S. Baric, Katrina M. Waters, Yoshihiro Kawaoka, Jason McDermott, Emilie Purvine
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-019-0823-2

A post-translational modification signature defines changes in soluble tau correlating with oligomerization in early stage Alzheimer’s disease brain
Cited by: 47
Author(s): Ebru Ercan-Herbst, J Ehrig, David C. Schöndorf, Annika Behrendt, Bernd Klaus, Borja Gomez Ramos, Nuria Prat Oriol, Christian Weber, Dagmar E. Ehrnhoefer
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1007771

Bayesian integrative analysis of epigenomic and transcriptomic data identifies Alzheimer's disease candidate genes and networks
Cited by: 8
Author(s): Hans-Ulrich Klein, Martin Schäfer, David A. Bennett, Holger Schwender, Philip L. De Jager
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2105-12-197

Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in breast cancer
Cited by: 37
Author(s): Hiroko Kato Solvang, Ole Christian Lingjærde, Arnoldo Frigessi, Anne‐Lise Børresen‐Dale, Vessela N. Kristensen
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0015613

Bioinformatics Analysis of Macrophages Exposed to Porphyromonas gingivalis: Implications in Acute vs. Chronic Infections
Cited by: 16
Author(s): Wenhan Yu, Han Hu, Qingde Zhou, Yu Xia, Salomon Amar
Software Mentions: 1
Published: almost 16 years ago

10.1007/s00401-016-1550-4

Glycolytic-to-oxidative fiber-type switch and mTOR signaling activation are early-onset features of SBMA muscle modified by high-fat diet
Cited by: 67
Author(s): Anna Rocchi, Carmelo Milioto, Sara Parodi, Andrea Armirotti, Doriana Borgia, Matteo Pellegrini, Anna Urciuolo, Sibilla Molon, Valeria Morbidoni, Manuela Marabita, Vanina Romanello, Pamela Gatto, Bert Blaauw, Paolo Bonaldo, Fabio Sambataro, Diane M. Robins, Andrew P. Lieberman, Gian Domenico Sorarù, Lodovica Vergani, Marco Sandri, Maria Pennuto
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-14-631

Efficient utilization of aerobic metabolism helps Tibetan locusts conquer hypoxia
Cited by: 27
Author(s): Dejian Zhao, Zhenyu Zhang, Arianne Cease, Jon F. Harrison, Le Kang
Software Mentions: 1
Published: about 13 years ago

10.18632/aging.103568

Methylation-dependent MCM6 repression induced by LINC00472 inhibits triple-negative breast cancer metastasis by disturbing the MEK/ERK signaling pathway
Cited by: 11
Author(s): Guoli Shao, Xulong Fan, Pusheng Zhang, Xuewen Li, Lei Huang, Shufeng Ji
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87362-0

Establishment and characterization of a new spontaneously immortalized ER−/PR−/HER2+ human breast cancer cell line, DHSF-BR16
Cited by: 2
Author(s): Stefania Nobili, Antonella Mannini, Astrid Parenti, Chiara Raggi, Andrea Lapucci, Giovanna Chiorino, Sara Paccosi, Paola Di Gennaro, Vania Vezzosi, Paolo Romagnoli, Tommaso Susini, Marcella Coronnello
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87168-0

Multi-omic analyses in Abyssinian cats with primary renal amyloid deposits
Cited by: 4
Author(s): Francesca Genova, Simona Nonnis, Elisa Maffioli, Gioacchino Tedeschi, M.G. Strillacci, Michela Carisetti, G. Sironi, Francesca Anna Cupaioli, Noemi Di Nanni, Alessandra Mezzelani, Ettore Mosca, Christopher R Helps, P.A.J. Leegwater, Laëtitia Dorso, M. Longeri
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-11-27

Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach
Cited by: 101
Author(s): Dirk Repsilber, Sabine Kern, Anna Telaar, Gerhard Walzl, Gillian F. Black, Joachim Selbig, Shreemanta K. Parida, Stefan H. E. Kaufmann, Marc Jacobsen
Software Mentions: 1
Published: over 16 years ago

10.3389/fonc.2020.01172

LncRNA DLX6-AS1 Promotes Malignant Phenotype and Lymph Node Metastasis in Prostate Cancer by Inducing LARGE Methylation
Cited by: 15
Author(s): Zhifeng Zhao, Shu Liang, Fang Sun
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-14-861

The role of Dichaete in transcriptional regulation during Drosophila embryonic development
Cited by: 32
Author(s): J. Aleksić, Enrico Ferrero, Bettina Fischer, Shih Pei Shen, Steven Russell
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0193943

Protease signaling through protease activated receptor 1 mediate nerve activation by mucosal supernatants from irritable bowel syndrome but not from ulcerative colitis patients
Cited by: 32
Author(s): Sabine Bühner, Hannes Hahne, Kerstin Hartwig, Qin Li, Sheila Vignali, Daniela Ostertag, Chen Meng, Gabriele Hörmannsperger, Breg Braak, Christian Pehl, Thomas Frieling, Giovanni Barbara, Roberto De Giorgio, İhsan Ekin Demir, Güralp O. Ceyhan, Florian Zeller, Guy E. Boeckxstaens, Dirk Haller, Bernhard Küster, Michael Schemann
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pcbi.1003851

A Novel Model to Combine Clinical and Pathway-Based Transcriptomic Information for the Prognosis Prediction of Breast Cancer
Cited by: 70
Author(s): Sijia Huang, Cameron Yee, Travers Ching, Herbert Yu, Lana X. Garmire
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pcbi.1002531

Viral Perturbations of Host Networks Reflect Disease Etiology
Cited by: 99
Author(s): Natali Gulbahce, Han Yan, Amélie Dricot, Megha Padi, Danielle Byrdsong, Rachel Franchi, Deok-Sun Lee, Orit Rozenblatt-Rosen, Jessica C. Mar, Michael A. Calderwood, Amy Baldwin, Bo Zhao, S. Balaji, Pascal Braun, Nicolas Simonis, Kyung-Won Huh, Karin Hellner, Miranda Grace, Alyce A. Chen, Renee Rubio, Jarrod A. Marto, Nicholas A. Christakis, Elliott Kieff, Frederick P. Roth, Jennifer Roecklein‐Canfield, James A. DeCaprio, Michael E. Cusick, John Quackenbush, David E. Hill, Karl Münger, Marc Vidal, Albert‐László Barabási
Software Mentions: 1
Published: over 14 years ago

10.3389/fonc.2019.01029

MicroRNA and mRNA Interaction Network Regulates the Malignant Transformation of Human Bronchial Epithelial Cells Induced by Cigarette Smoke
Cited by: 20
Author(s): Jin Wang, Xiaofan Yu, Nan Ouyang, Shiyu Zhao, Haiping Yao, Xifei Guan, Jian Tong, Tao Chen, Jianxiang Li
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2105-9-117

A mixture model approach to sample size estimation in two-sample comparative microarray experiments
Cited by: 14
Author(s): Tommy S Jørstad, Herman Midelfart, Atle M. Bones
Software Mentions: 1
Published: over 18 years ago

10.3389/fonc.2021.630260

Characterization of the Prognostic m6A-Related lncRNA Signature in Gastric Cancer
Cited by: 47
Author(s): Haixu Wang, Qingkai Meng, Bin Ma
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2019.01261

hsa_circ_0007841: A Novel Potential Biomarker and Drug Resistance for Multiple Myeloma
Cited by: 40
Author(s): Meng Gao, Chengyuan Li, Han Xiao, Hang Dong, Siyi Jiang, Yunfeng Fu, Liying Gong
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1005460

Highly accessible AU-rich regions in 3’ untranslated regions are hotspots for binding of regulatory factors
Cited by: 48
Author(s): Mireya Plass, Simon Rasmussen, Anders Krogh
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0208753

Investigating epigenetic effects of activation-induced deaminase in chronic lymphocytic leukemia
Cited by: 4
Author(s): Maria Schubert, Hubert Hackl, Franz Josef Gassner, Richard Greil, Roland Geisberger
Software Mentions: 1
Published: almost 8 years ago

10.18632/aging.202785

Silencing long non-coding RNA MIAT ameliorates myocardial dysfunction induced by myocardial infarction via MIAT/miR-10a-5p/EGR2 axis
Cited by: 16
Author(s): Xiaohong Cao, Qinghua Ma, Bin Wang, Qingqiang Qian, Ning Liu, Tiejun Liu, Xiaoliu Dong
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88489-w

Ulcerative colitis immune cell landscapes and differentially expressed gene signatures determine novel regulators and predict clinical response to biologic therapy
Cited by: 12
Author(s): Harrison M. Penrose, Rida Iftikhar, Morgan Collins, Eman A. Toraih, Emmanuelle Ruiz, Nathan Ungerleider, Hani Nakhoul, Erik Flemington, Emad Kandil, Shamita B. Shah, Suzana D. Savkovic
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0155191

Maternal Whole Blood Gene Expression at 18 and 28 Weeks of Gestation Associated with Spontaneous Preterm Birth in Asymptomatic Women
Cited by: 47
Author(s): Yujing J. Heng, Craig E. Pennell, Sheila McDonald, Angela Vinturache, Jingxiong Xu, Mary W. F. Lee, Laurent Briollais, Andrew W. Lyon, Donna M. Slater, Alan D. Bocking, Lawrence de Koning, David M. Olson, Siobhan M. Dolan, Suzanne Tough, Stephen J. Lye
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-021-88695-6

Differential root and shoot magnetoresponses in Arabidopsis thaliana
Cited by: 15
Author(s): Ivan A. Paponov, Judith Fliegmann, Ravishankar Narayana, Massimo E. Maffei
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0176139

Hypomethylating agents synergize with irinotecan to improve response to chemotherapy in colorectal cancer cells
Cited by: 28
Author(s): Anup Sharma, Rajita Vatapalli, Eihab Abdelfatah, K. Wyatt McMahon, Zachary Kerner, Angela A. Guzzetta, Jasvinder Singh, Cynthia A. Zahnow, Stephen B. Baylin, Sashidhar R. Yerram, Yue Hu, Nilofer S. Azad, Nita Ahuja
Software Mentions: 1
Published: over 9 years ago

10.3389/fonc.2021.680642

Long Non-Coding RNA CCAT2 Promotes the Development of Esophageal Squamous Cell Carcinoma by Inhibiting miR-200b to Upregulate the IGF2BP2/TK1 Axis
Cited by: 15
Author(s): Xiaodan Wu, Yihui Fan, Yupeng Liu, Baogen Shen, Haimin Lu, Haitao Ma
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2105-12-134

SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects
Cited by: 69
Author(s): Alexis Dereeper, Stéphane Nicolas, Loïc Le Cunff, Roberto Baciliéri, Agnès Doligez, Jean‐Pierre Péros, Manuel Ruiz, Patrice This
Software Mentions: 1
Published: over 15 years ago

10.1098/rsob.170134

TGFβ-facilitated optic fissure fusion and the role of bone morphogenetic protein antagonism
Cited by: 28
Author(s): Max D. Knickmeyer, Juan L. Mateo, Priska Eckert, Eleni Roussa, Belal Rahhal, Aimée Zúñiga, Kerstin Krieglstein, Joachim Wittbrodt, Stephan Heermann
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-88816-1

Inhibition of eEF2K synergizes with glutaminase inhibitors or 4EBP1 depletion to suppress growth of triple-negative breast cancer cells
Cited by: 5
Author(s): Youngjun Ju, Yaacov Ben‐David, Daniela Rotin, Eldad Zacksenhaus
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2021.611038

CHI3L2 Is a Novel Prognostic Biomarker and Correlated With Immune Infiltrates in Gliomas
Cited by: 17
Author(s): Liling Liu, Yuan-Zhong Yang, Hao Duan, Jiahua He, Lu Sun, Wanming Hu, Jing Zeng
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2021.661653

miR-9-5p Mediates ABCC1 to Elevate the Sensitivity of Glioma Cells to Temozolomide
Cited by: 3
Author(s): Xiangrui Chen, Yanguo Zhang, Qiang Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12859-018-2117-2

Robust volcano plot: identification of differential metabolites in the presence of outliers
Cited by: 25
Author(s): Nishith Kumar, Md. Rakibul Hoque, Masahiro Sugimoto
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.18285

Altered erythropoiesis and decreased number of erythrocytes in children with neuroblastoma
Cited by: 11
Author(s): Fabio Morandi, Sebastiano Barco, Sara Stigliani, Michela Croce, Luca Persico, Corrado Lagazio, Francesca Scuderi, Maria Luisa Belli, Mariapina Montera, Giuliana Cangemi, Sarah Pozzi, Valentina Rigo, Paola Scaruffi, Loredana Amoroso, Giovanni Erminio, Vito Pistoia, Silvano Ferrini, Maria Valeria Corrias
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-021-88465-4

Adulthood blood levels of hsa-miR-29b-3p associate with preterm birth and adult metabolic and cognitive health
Cited by: 9
Author(s): Saara Marttila, Suvi Rovio, Pashupati P. Mishra, Ilkka Seppälä, Leo-Pekka Lyytikäinen, Markus Juonala, Mélanie Waldenberger, Niku Oksala, Mika Ala‐Korpela, Emily W. Harville, Nina Hutri‐Kähönen, Mika Kähönen, Olli T. Raitakari, Terho Lehtimäki, Emma Raitoharju
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007061

The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern
Cited by: 4
Author(s): Saman Amini, Annika Jacobsen, Olga Ivanova, Philip Lijnzaad, Jaap Heringa, Frank C. P. Holstege, K. Anton Feenstra, Patrick Kemmeren
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.10949

Prognostic value of molecular events from negative surgical margin of non-small-cell lung cancer
Cited by: 7
Author(s): Bangrong Cao, Feng Li, Dongfang Lu, Yan Liu, Yu Liu, Shu Guo, Ning Han, Xiangyang Liu, Yousheng Mao, Jie He, Shujun Cheng, Yanning Gao, Kaitai Zhang
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0135520

Pharmacokinetics and Pharmacodynamics with Extended Dosing of CC-486 in Patients with Hematologic Malignancies
Cited by: 52
Author(s): Eric Laille, Tao Shi, Guillermo Garcia‐Manero, Christopher R. Cogle, Steven D. Gore, Joel Hetzer, Keshava Kumar, Barry S. Skikne, Kyle J. MacBeth
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2105-14-59

Active subnetwork recovery with a mechanism-dependent scoring function; with application to angiogenesis and organogenesis studies
Cited by: 3
Author(s): Ilana Lichtenstein, Michael A. Charleston, Tibério Caetano, Jennifer R. Gamble, Mathew A. Vadas
Software Mentions: 1
Published: over 13 years ago

10.3389/fonc.2020.545460

Circular RNA Circ-03955 Promotes Epithelial-Mesenchymal Transition in Osteosarcoma by Regulating miR-3662/Metadherin Pathway
Cited by: 11
Author(s): Zhengguang Wang, Mingsi Deng, Liangjian Chen, Weiguo Wang, Gengyan Liu, Dongbiao Liu, Zhipeng Han, Yong Zhou
Software Mentions: 1
Published: almost 6 years ago

10.3390/microarrays3040263

Expression Comparison of Oil Biosynthesis Genes in Oil Palm Mesocarp Tissue Using Custom Array
Cited by: 12
Author(s): Yick Ching Wong, Qi Bin Kwong, Heng Leng Lee, Chuang Kee Ong, Sean Mayes, Fook Tim Chew, David R. Appleton, Harikrishna Kulaveerasingam
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41388-018-0546-z

Regulation of human glioma cell migration, tumor growth, and stemness gene expression using a Lck targeted inhibitor
Cited by: 48
Author(s): John P. Zepecki, Kristin M. Snyder, Margot-Martinez Moreno, Eduardo Fajardo, András Fiser, Jennifer K. Ness, Atom Sarkar, Steven Toms, Nikos Tapinos
Software Mentions: 1
Published: almost 8 years ago

10.1097/MD.0000000000018815

Expression of SREBP2 and cholesterol metabolism related genes in TCGA glioma cohorts
Cited by: 6
Author(s): Dali Li, Shenglan Li, Allen Z Xue, Laura A. Smith Callahan, Ying Liu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0228195

GPCR-induced YAP activation sensitizes fibroblasts to profibrotic activity of TGFβ1
Cited by: 19
Author(s): Katarina Zmajkovicova, Yasmina Bauer, Katalin Menyhart, Marie Schnoebelen, Diego Freti, Maxime Boucher, Bérengère Renault, R. O. Studer, Magdalena Birker‐Robaczewska, Axel Klenk, Oliver Nayler, John Gatfield
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-9-388

Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate
Cited by: 61
Author(s): Onguma Natalang, Emmanuel Bischoff, Guillaume Deplaine, Caroline Proux, Marie‐Agnès Dillies, Odile Sismeiro, Ghislaine Guigon, Serge Bonnefoy, Jintana Patarapotikul, Odile Mercereau–Puijalon, Jean‐Yves Coppée, Peter H. David
Software Mentions: 1
Published: about 18 years ago

10.1002/cam4.4033

Regional and racial disparity in proximal gastric cancer survival outcomes 1996–2016: Results from SEER and China National Cancer Center database
Cited by: 10
Author(s): Lulu Zhao, Penghui Niu, Dongbing Zhao, Yingtai Chen
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.18255

Bromodomain inhibition shows antitumoral activity in mice and human luminal breast cancer
Cited by: 21
Author(s): Montserrat Pérez-Salvia, Laia Simó-Riudalbas, Pere Llinàs‐Arias, Laura M. Roa, Fernando Setién, Marta Soler, Manuel Castro de Moura, James E. Bradner, Eva González-Suárez, Cátia Moutinho, Manel Esteller
Software Mentions: 1
Published: over 9 years ago

10.3389/fonc.2020.560779

A Seven Immune-Related lncRNAs Model to Increase the Predicted Value of Lung Adenocarcinoma
Cited by: 43
Author(s): Jianping Li, Rui Li, Xiao Liu, Huo Chen, Tingting Liu, Jie Yao, Yi-Qing Qu
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-15-1018

Dissecting the organ specificity of insecticide resistance candidate genes in Anopheles gambiae: known and novel candidate genes
Cited by: 52
Author(s): Victoria A. Ingham, Christopher M. Jones, Pasquale Pignatelli, Vasileia Balabanidou, John Vontas, Simon C. Wagstaff, Jonathan D. Moore, Hilary Ranson
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-021-89789-x

Discovery of primary prostate cancer biomarkers using cross cancer learning
Cited by: 12
Author(s): Kaiyue Zhou, Suzan Arslanturk, Douglas B. Craig, Elisabeth I. Heath, Sorin Drăghici
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-8-17

Normalization of low-density microarray using external spike-in controls: analysis of macrophage cell lines expression profile
Cited by: 10
Author(s): Paolo Fardin, Stefano Moretti, Barbara Biasotti, Annamaria Ricciardi, Stefano Bonassi, Luigi Varesio
Software Mentions: 1
Published: over 19 years ago

Projects: bioconductor: limma

Science Score: 78/100

Bonuses:

Penalties:

Papers Mentioning limma 7,776