10.3389/fmed.2021.649279

Targeting Antisense lncRNA PRKAG2-AS1, as a Therapeutic Target, Suppresses Malignant Behaviors of Hepatocellular Carcinoma Cells
Cited by: 4
Author(s): Yanjiao Ou, Yong Deng, Hong Wang, Qingyi Zhang, Huan Luo, Peng Hu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0013319

Age and Diet Affect Gene Expression Profiles in Canine Liver Tissue
Cited by: 17
Author(s): Dong Yong Kil, Brittany M. Vester Boler, Carolyn J. Apanavicius, Lawrence B. Schook, Kelly S. Swanson
Software Mentions: 1
Published: about 16 years ago

10.3389/fmed.2020.577578

Bone Marrow Mesenchymal Stem Cell-Derived Exosomal miR-25 Regulates the Ubiquitination and Degradation of Runx2 by SMURF1 to Promote Fracture Healing in Mice
Cited by: 22
Author(s): Yikun Jiang, Jun Zhang, Zhengwei Li, Guanghong Jia
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmed.2021.626948

Circular RNA Microarray Analyses in Hepatic Ischemia-Reperfusion Injury With Ischemic Preconditioning Prevention
Cited by: 4
Author(s): Xinyao Tian, Yan Hu, Yuanxing Liu, Zhe Yang, Haiyang Xie, Lin Zhou, Shusen Zheng
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0015613

Bioinformatics Analysis of Macrophages Exposed to Porphyromonas gingivalis: Implications in Acute vs. Chronic Infections
Cited by: 16
Author(s): Wenhan Yu, Han Hu, Qingde Zhou, Yu Xia, Salomon Amar
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0193943

Protease signaling through protease activated receptor 1 mediate nerve activation by mucosal supernatants from irritable bowel syndrome but not from ulcerative colitis patients
Cited by: 32
Author(s): Sabine Bühner, Hannes Hahne, Kerstin Hartwig, Qin Li, Sheila Vignali, Daniela Ostertag, Chen Meng, Gabriele Hörmannsperger, Breg Braak, Christian Pehl, Thomas Frieling, Giovanni Barbara, Roberto De Giorgio, İhsan Ekin Demir, Güralp O. Ceyhan, Florian Zeller, Guy E. Boeckxstaens, Dirk Haller, Bernhard Küster, Michael Schemann
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0208753

Investigating epigenetic effects of activation-induced deaminase in chronic lymphocytic leukemia
Cited by: 4
Author(s): Maria Schubert, Hubert Hackl, Franz Josef Gassner, Richard Greil, Roland Geisberger
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2015.00027

Analysis of the Salmonella regulatory network suggests involvement of SsrB and H-NS in σE-regulated SPI-2 gene expression
Cited by: 17
Author(s): Jie Li, Chris Overall, Ernesto Nakayasu, Afshan S. Kidwai, Marcus B. Jones, Rudd C. Johnson, Nancy Nguyen, Jason McDermott, Charles Ansong, Fred Heffron, Eric D. Cambronne, Joshua N. Adkins
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0068693

Transcriptome of Extracellular Vesicles Released by Hepatocytes
Cited by: 54
Author(s): Félix Royo, Karin Schlangen, Laura Palomo, Esperanza González, Javier Conde‐Vancells, A. Berisa, Ana M. Aransay, Juan Manuel Falcón‐Pérez
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0041593

Inhibition of AKT with the Orally Active Allosteric AKT Inhibitor, MK-2206, Sensitizes Endometrial Cancer Cells to Progestin
Cited by: 48
Author(s): Alok Pant, Irene Lee, Zhenxiao Lu, Bo R. Rueda, Julian C. Schink, Julie Kim
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0095893

Rac2 Controls Tumor Growth, Metastasis and M1-M2 Macrophage Differentiation In Vivo
Cited by: 84
Author(s): Shweta Joshi, Alok R. Singh, Muamera Zulcic, Lei Bao, Karen Messer, Trey Ideker, Janusz Dutkowski, Donald L. Durden
Software Mentions: 1
Published: over 12 years ago

10.18632/aging.102111

Genetic polymorphisms and transcription profiles associated with intracranial aneurysm: a key role for NOTCH3
Cited by: 2
Author(s): Mengqi Li, Xinlong Dong, Shi Chen, Weihan Wang, Chao Yang, Bochuan Li, Degang Liang, Weidong Yang, Xiaozhi Liu, Xinyu Yang
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0019980

Novel Two-Component Systems Implied in Antibiotic Production in Streptomyces coelicolor
Cited by: 43
Author(s): Ana Yepes, Sergio Rico, Antonio Rodríguez‐García, Ramón I. Santamaría, Margarita Díaz
Software Mentions: 1
Published: over 15 years ago

10.3390/ijms20246283

Genetic Programs Driving Oncogenic Transformation: Lessons from In Vitro Models
Cited by: 6
Author(s): Eros Di Giorgio, Harikrishnareddy Paluvai, Raffaella Picco, Claudio Brancolini
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2018.00397

Analysis of Mouse Brain Transcriptome After Experimental Duvenhage Virus Infection Shows Activation of Innate Immune Response and Pyroptotic Cell Death Pathway
Cited by: 9
Author(s): Penelope Koraka, Benedict Martina, Henk-Jan van den Ham, Fatiha Zaaraoui-Boutahar, Wilfred F. J. van IJcken, Jouke M. Roose, Geert van Amerongen, Arno C. Andeweg, A.D.M.E. Osterhaus
Software Mentions: 1
Published: over 8 years ago

10.1186/s12885-020-07316-z

Interconnectivity between molecular subtypes and tumor stage in colorectal cancer
Cited by: 13
Author(s): Robert R.J. Coebergh van den Braak, Sanne ten Hoorn, Anieta M. Sieuwerts, Jurriaan B. Tuynman, Marcel Smid, Saskia M. Wilting, John W.M. Martens, Cornelis J.A. Punt, John A. Foekens, Jan Paul Medema, Jan N.M. IJzermans, Louis Vermeulen
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0171958

Dissecting nutrient-related co-expression networks in phosphate starved poplars
Cited by: 16
Author(s): Mareike Kavka, Andrea Polle
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms20246296

Irradiated Human Fibroblasts as a Substitute Feeder Layer to Irradiated Mouse 3T3 for the Culture of Human Corneal Epithelial Cells: Impact on the Stability of the Transcription Factors Sp1 and NFI
Cited by: 6
Author(s): Gaëtan Le‐Bel, Sergio Cortez Ghio, Louis-Philippe Guérin, Francis Bisson, Lucie Germain, Sylvain L. Guérin
Software Mentions: 1
Published: almost 7 years ago

10.18632/aging.203158

Comprehensive signature analysis of drug metabolism differences in the White, Black and Asian prostate cancer patients
Cited by: 8
Author(s): Liu Yang, Jiawei Zhou, Cundong Liu, Jing Yang, De-Ying Liao, Zhen Liang, Xiao Xie, Qing Zhou, Kai Xue, Wenbing Guo, Ming Xia, Jiaju Zhou, Junjie Bao, Cheng Yang, Haifeng Duan, Hongyi Wang, Zhipeng Huang, Shan‐Chao Zhao, Ming-Kun Chen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0094963

Tomato Genome-Wide Transcriptional Responses to Fusarium Wilt and Tomato Mosaic Virus
Cited by: 23
Author(s): Giuseppe Andolfo, Francesca Ferriello, Luca Tardella, Alberto Ferrarini, Loredana Sigillo, Luigi Frusciante, Maria Raffaella Ercolano
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0056818

Whole Genome Gene Expression Meta-Analysis of Inflammatory Bowel Disease Colon Mucosa Demonstrates Lack of Major Differences between Crohn's Disease and Ulcerative Colitis
Cited by: 105
Author(s): Atle van Beelen Granlund, Arnar Flatberg, Ann Elisabet Østvik, Ignat Drozdov, Bjørn Gustafsson, Mark Kidd, Vidar Beisvåg, Sverre Helge Torp, Helge L. Waldum, Tom Christian Martinsen, Jan Kristian Damås, Terje Espevik, Arne K. Sandvik
Software Mentions: 1
Published: almost 14 years ago

10.3390/ijms21010129

Hypoxia-Induced miR-210 Is Necessary for Vascular Regeneration upon Acute Limb Ischemia
Cited by: 14
Author(s): Germana Zaccagnini, Biagina Maimone, Paola Fuschi, Marialucia Longo, Daniel Da Silva, Matteo Carrara, Christine Voellenkle, Laura Perani, Antonio Esposito, Carlo Gaetano, Fabio Martelli
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21020638

Transcriptome Modifications in the Porcine Intramuscular Adipocytes during Differentiation and Exogenous Stimulation with TNF-α and Serotonin
Cited by: 13
Author(s): Asuka Tada, M. S. Islam, A. K. M. Humayun Kober, Kohtaro Fukuyama, Michihiro Takagi, Manami Igata, Leonardo Albarracín, Wakako Ikeda-Ohtsubo, Kenji Miyazawa, Kazutoyo Yoda, Fang He, Hideki Takahashi, Julio Villena, Hisashi Aso, Haruki Kitazawa
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21020602

Mechanisms of Tumor-Lymphatic Interactions in Invasive Breast and Prostate Carcinoma
Cited by: 9
Author(s): Leticia Oliveira‐Ferrer, Karin Milde‐Langosch, Kathrin Eylmann, Maila Roßberg, Volkmar Müller, Barbara Schmalfeldt, Isabell Witzel, Jasmin Wellbrock, Walter Fiedler
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0149050

Gene Regulatory Network Inference of Immunoresponsive Gene 1 (IRG1) Identifies Interferon Regulatory Factor 1 (IRF1) as Its Transcriptional Regulator in Mammalian Macrophages
Cited by: 63
Author(s): Aravind Tallam, Thanneer M. Perumal, Paul Antony, Christian Jäger, Joëlle V. Fritz, Laurent Vallar, Rudi Balling, Antonio del Sol, Alessandro Michelucci
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijms21031100

The Effect of 3′-Hydroxy-3,4,5,4′-Tetramethoxy -stilbene, the Metabolite of the Resveratrol Analogue DMU-212, on the Motility and Proliferation of Ovarian Cancer Cells
Cited by: 9
Author(s): Andrzej Nowicki, Paulina Skupin-Mrugalska, Małgorzata Józkowiak, Marcin Wierzchowski, Marcin Ruciński, Piotr Ramlau, Violetta Krajka‐Kuźniak, Jadwiga Jodynis‐Liebert, Hanna Piotrowska‐Kempisty
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2012.00284

Comparison of Sepsis-Induced Transcriptomic Changes in a Murine Model to Clinical Blood Samples Identifies Common Response Patterns
Cited by: 15
Author(s): Sandro Lambeck, Martina Weber, Falk A. Gonnert, Ralf Mrowka, Michael Bauer
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2407-9-441

Transcribed-ultra conserved region expression is associated with outcome in high-risk neuroblastoma
Cited by: 95
Author(s): Paola Scaruffi, Sara Stigliani, Stefano Moretti, Simona Coco, Carla De Vecchi, Francesca Valdora, Alberto Garaventa, Stefano Bonassi, Gian Paolo Tonini
Software Mentions: 1
Published: almost 17 years ago

10.3389/fmicb.2017.00276

Apoptosis, Toll-like, RIG-I-like and NOD-like Receptors Are Pathways Jointly Induced by Diverse Respiratory Bacterial and Viral Pathogens
Cited by: 21
Author(s): Isidoro Martı́nez, Juan Carlos Oliveros, Isabel Cuesta, Jorge de la Barrera, Vicente Ausina, Cristina Casals, Alba de Lorenzo, Ernesto Garcı́a, Belén García-Fojeda, Junkal Garmendía, Mar González-Nicolau, Alícia Lacoma, Margarita Menéndez, David Moranta, Amelia Nieto, Juan Ortı́n, Alicia Pérez-González, Cristina Prat, Elisa Ramos‐Sevillano, Verónica Regueiro, Ariel Rodríguez-Frandsen, Dolores Solı́s, José Yuste, José A. Bengoechea, José A. Melero
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2016.00229

Different Transcriptional Responses from Slow and Fast Growth Rate Strains of Listeria monocytogenes Adapted to Low Temperature
Cited by: 24
Author(s): Ninoska Cordero, Felipe Rodríguez Maza, Helen Navea-Perez, Andrés Aravena, Bárbara Marquez-Fontt, Paola Navarrete, Guillermo Figueroa, Maurício González, Mauricio Latorre, Angélica Reyes-Jara
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2021.638640

Silver Nanoparticles Induce a Triclosan-Like Antibacterial Action Mechanism in Multi-Drug Resistant Klebsiella pneumoniae
Cited by: 19
Author(s): Vikram Pareek, Stéphanie Devineau, Sathesh K Sivasankaran, Arpit Bhargava, Jitendra Panwar, Shabarinath Srikumar, Séamus Fanning
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.01301

NF-κB/TWIST1 Mediates Migration and Phagocytosis of Macrophages in the Mice Model of Implant-Associated Staphylococcus aureus Osteomyelitis
Cited by: 13
Author(s): Yutian Wang, Yihuang Lin, Ching‐Li Cheng, Pengyu Chen, Ping Zhang, Hangtian Wu, Kaiqun Li, Ye Deng, Jikun Qian, Xianrong Zhang, Bin Yu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0097078

Involvement of MAP3K8 and miR-17-5p in Poor Virologic Response to Interferon-Based Combination Therapy for Chronic Hepatitis C
Cited by: 10
Author(s): Akihito Tsubota, Kaoru Mogushi, Hideki Aizaki, Ken Miyaguchi, Keisuke Nagatsuma, Hiroshi Miyata, Tatsuya Kushida, Tomomi Furihata, Hiroshi Tanaka, Tomokazu Matsuura
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms21030909

Combined Proteomics and Metabolism Analysis Unravels Prominent Roles of Antioxidant System in the Prevention of Alfalfa (Medicago sativa L.) against Salt Stress
Cited by: 31
Author(s): Jikai Li, Jemâa Essemine, Chaoqun Shang, Hailing Zhang, Xiaocen Zhu, Jialin Yu, Genyun Chen, Mingnan Qu, Dequan Sun
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2017.00539

Outlining Core Pathways of Amyloid Toxicity in Bacteria with the RepA-WH1 Prionoid
Cited by: 15
Author(s): Laura Molina García, María Moreno-del Álamo, Pedro Botías, Zaira Martín‐Moldes, María Rosario Salinas Fernández, Alicia Sánchez-Gorostiaga, Aída Alonso-del Valle, Juan Nogales, Jesús García-Cantalejo, Rafael Giraldo
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.02084

Clostridium difficile Biofilm: Remodeling Metabolism and Cell Surface to Build a Sparse and Heterogeneously Aggregated Architecture
Cited by: 46
Author(s): Isabelle Poquet, Laure Saujet, Alexis Canette, Marc Monot, Jovana Mihajlovic, Jean‐Marc Ghigo, Olga Soutourina, Romain Briandet, Isabelle Martin‐Verstraete, Bruno Dupuy
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2407-13-231

Age dependence of tumor genetics in unfavorable neuroblastoma: arrayCGH profiles of 34 consecutive cases, using a Swedish 25-year neuroblastoma cohort for validation
Cited by: 9
Author(s): Cihan Cetinkaya, Tommy Martinsson, Johanna Sandgren, Catarina Träger, Per Kogner, Jan P. Dumanski, Teresita Díaz de Ståhl, Fredrik Hedborg
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0036708

Extensive Transcriptional Regulation of Chromatin Modifiers during Human Neurodevelopment
Cited by: 22
Author(s): Matthias K. Weng, Bastian Zimmer, Dominik Pöltl, Marc P. Broeg, Violeta N. Ivanova, John Antonydas Gaspar, Agapios Sachinidis, Ullrich Wüllner, Tanja Waldmann, Marcel Leist
Software Mentions: 1
Published: over 14 years ago

10.3389/fmicb.2020.01553

Increased Antibody Response to Fucosylated Oligosaccharides and Fucose-Carrying Bacteroides Species in Crohn’s Disease
Cited by: 7
Author(s): Katharina Kappler, Yi Lasanajak, David F. Smith, Lennart Opitz, Thierry Hennet
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0150383

Cigarette Smoke Enhances the Expression of Profibrotic Molecules in Alveolar Epithelial Cells
Cited by: 51
Author(s): Marco Checa, James S. Hagood, Rafael Velázquez‐Cruz, Vı́ctor Ruiz, Carolina García de Alba, Claudia Rangel‐Escareño, Francisco Urrea, Carina Becerril, Martha Montaño, Semiramis García-Trejo, José Cisneros, Arnoldo Aquino‐Gálvez, Annie Pardo, Moisés Selman
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0191892

Recellularization of rat liver: An in vitro model for assessing human drug metabolism and liver biology
Cited by: 24
Author(s): Matthew J. Robertson, Benjamin Soibam, Jacqueline G. O’Leary, Luiz C. Sampaio, Doris A. Taylor
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0058651

B0AT2 (SLC6A15) Is Localized to Neurons and Astrocytes, and Is Involved in Mediating the Effect of Leucine in the Brain
Cited by: 18
Author(s): Maria Hägglund, Sahar Roshanbin, Erik Löfqvist, Sofie V. Hellsten, Victor Nilsson, Aniruddha Todkar, Yinan Zhu, Olga Stephansson, Jana Drgonová, George R. Uhl, Helgi B. Schiöth, Robert Fredriksson
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2019.02007

Regulation of Early Host Immune Responses Shapes the Pathogenicity of Avian Influenza A Virus
Cited by: 9
Author(s): Jiya Sun, Jingfeng Wang, Xuye Yuan, Xiangwei Wu, Tianqi Sui, Aiping Wu, Genhong Cheng, Taijiao Jiang
Software Mentions: 1
Published: about 7 years ago

10.1186/s12885-016-2212-6

Dynamic modulation of phosphoprotein expression in ovarian cancer xenograft models
Cited by: 5
Author(s): Antonis Koussounadis, Simon P. Langdon, In Hwa Um, Charlene Kay, Kyle Francis, David J. Harrison, V. Anne Smith
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms21041305

Differential Secretion of Angiopoietic Factors and Expression of MicroRNA in Umbilical Cord Blood from Healthy Appropriate-For-Gestational-Age Preterm and Term Newborns—in Search of Biomarkers of Angiogenesis-Related Processes in Preterm Birth
Cited by: 10
Author(s): Dorota Gródecka-Szwajkiewicz, Zofia Ulańczyk, Edyta Zagrodnik, Karolina Łuczkowska, Dorota Rogińska, Miłosz Kawa, Iwona Stecewicz, Krzysztof Safranow, Bogusław Machaliński
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2016.00320

Genome-Wide Expression Profiling Reveals S100B as Biomarker for Invasive Aspergillosis
Cited by: 6
Author(s): Andreas Dix, Kristin Czakai, Jan Springer, Mirjam Fließer, Michael Bonin, Reinhard Guthke, Anna Lena Schmitt, Hermann Einsele, Jörg Linde, Jürgen Löffler
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0233702

Expression of hepatic stellate cell activation-related genes in HBV-, HCV-, and nonalcoholic fatty liver disease-associated fibrosis
Cited by: 16
Author(s): Lǚ Hé, Hui Yuan, Jianying Liang, Jian Hong, Chen Qu
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.596440

CircRNA-1806 Decreases T Cell Apoptosis and Prolongs Survival of Mice After Cryptococcal Infection by Sponging miRNA-126
Cited by: 4
Author(s): Lei Zhang, Keming Zhang, Wenzhang Fang, Hang Li, Yingfang Li, Weiwei Jiang, Dongying Hu, Carolina Coelho, Xiaogang Liu, Liangqi Cai, Wanqing Liao, Weihua Pan
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2015.00051

Heat shock proteins IbpA and IbpB are required for NlpI-participated cell division in Escherichia coli
Cited by: 9
Author(s): Jing Tao, Yu Sang, Qihui Teng, Jinjing Ni, Kevin Yi Yang, Stephen Kwok‐Wing Tsui, Yufeng Yao
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmicb.2018.01142

Analysis of Beijing Douzhir Microbiota by High-Throughput Sequencing and Isolation of Acidogenic, Starch-Flocculating Strains
Cited by: 2
Author(s): Yan Xu, Yu Yang, Yuan Tian, Yuhong Su, Xiaona Li, Zhen Zhang, Hongyan Zhu, Jiahong Han, Huajiang Zhang, Liying Liu, Lili Zhang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0227889

Dipeptidyl peptidase-4 is increased in the abdominal aortic aneurysm vessel wall and is associated with aneurysm disease processes
Cited by: 6
Author(s): Moritz Lindquist Liljeqvist, Linnéa Eriksson, Christina Villard, Mariette Lengquist, Malin Kronqvist, Rebecka Hultgren, Joy Roy
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0114530

The Molecular Signature of the Stroma Response in Prostate Cancer-Induced Osteoblastic Bone Metastasis Highlights Expansion of Hematopoietic and Prostate Epithelial Stem Cell Niches
Cited by: 43
Author(s): Berna C. Özdemir, Janine Hensel, Chiara Secondini, Antoinette Wetterwald, Ruth Schwaninger, Achim Fleischmann, Wolfgang Raffelsberger, Olivier Poch, Mauro Delorenzi, Ramzi Temanni, Ian G. Mills, Gabri van der Pluijm, George N. Thalmann, Marco Cecchini
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2407-10-262

High-throughput miRNA profiling of human melanoma blood samples
Cited by: 143
Author(s): Petra Leidinger, Andreas Keller, Anne Borries, Jörg Reichrath, Knuth Rass, Sven Jäger, Hans‐Peter Lenhof, Eckart Meese
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0003713

Genome-Scale Validation of Deep-Sequencing Libraries
Cited by: 18
Author(s): Dominic Schmidt, Rory Stark, Michael D. Wilson, Gordon D. Brown, Duncan T. Odom
Software Mentions: 1
Published: about 18 years ago

10.1371/journal.pone.0143045

An Effective Method to Identify Shared Pathways and Common Factors among Neurodegenerative Diseases
Cited by: 15
Author(s): Ping Li, Yaling Nie, Jing Yu
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2020.01939

Genome-Wide Transcription Start Site Mapping and Promoter Assignments to a Sigma Factor in the Human Enteropathogen Clostridioides difficile
Cited by: 38
Author(s): Olga Soutourina, Thomas Dubois, Marc Monot, Pavel V. Shelyakin, Laure Saujet, Pierre Boudry, Mikhail S. Gelfand, Bruno Dupuy, Isabelle Martin‐Verstraete
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-017-3114-y

Effect of myeloid differentiation primary response gene 88 on expression profiles of genes during the development and progression of Helicobacter-induced gastric cancer
Cited by: 19
Author(s): Ivonne Lozano‐Pope, Arnika Sharma, Michael Matthias, Kelly S. Doran, Marygorret Obonyo
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0206547

Parahippocampal gyrus expression of endothelial and insulin receptor signaling pathway genes is modulated by Alzheimer’s disease and normalized by treatment with anti-diabetic agents
Cited by: 19
Author(s): Pavel Katsel, Panos Roussos, Michal Schnaider Beeri, Miguel A. Gama-Sosa, Sam Gandy, Sonia Khan, Vahram Haroutunian
Software Mentions: 1
Published: about 8 years ago

10.1186/s12896-015-0218-9

Transcriptome study and identification of potential marker genes related to the stable expression of recombinant proteins in CHO clones
Cited by: 9
Author(s): Uroš Jamnikar, Petra Nikolić, Aleš Belič, Marjanca Blas, Dominik Gaser, Andrej Francky, Holger Laux, Andrej Blejec, Špela Baebler, Kristina Gruden
Software Mentions: 1
Published: about 11 years ago

10.18632/oncotarget.27844

Differential gene expression in cisplatin-resistant and -sensitive testicular germ cell tumor cell lines
Cited by: 6
Author(s): Jan Roška, Lenka Wachsmannová, Lenka Hurbanová, Zuzana Šestáková, Thomas Mueller, Dana Jurkovičová, Miroslav Chovanec
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0137657

Copy Number Gains at 8q24 and 20q11-q13 in Gastric Cancer Are More Common in Intestinal-Type than Diffuse-Type
Cited by: 19
Author(s): Dong Jin, Seong-Eun Park, Jeeyun Lee, Kyungmi Kim, Sung Kim, Duk-Hwan Kim, Joobae Park
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0068810

Potential Capacity of Aptamers to Trigger Immune Activation in Human Blood
Cited by: 42
Author(s): Meltem Avci‐Adali, Heidrun Steinle, Tatjana Michel, Christian Schlensak, Hans Peter Wendel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0061353

Mutant p53 Attenuates the Anti-Tumorigenic Activity of Fibroblasts-Secreted Interferon Beta
Cited by: 29
Author(s): Shalom Madar, Einav Harel, Ido Goldstein, Yan Stein, Ira Kogan-Sakin, Iris Kamer, Hilla Solomon, Elya Dekel, Perry Tal, Naomi Goldfinger, Gérard Friedlander, Varda Rotter
Software Mentions: 1
Published: over 13 years ago

10.3389/fonc.2021.608113

Integrative Analysis of the Expression of SIGLEC Family Members in Lung Adenocarcinoma via Data Mining
Cited by: 5
Author(s): Haiyan Zhang, Yong-Fei Xie, Hu Zhang, Hong Yu, Xiang Xie, Yingchun Ye, Wangyang Xu, Siji Nian, Qing Yuan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0095596

Separate and Combined Effects of DNMT and HDAC Inhibitors in Treating Human Multi-Drug Resistant Osteosarcoma HosDXR150 Cell Line
Cited by: 42
Author(s): Enrico Capobianco, Antonio M. Mora, Dario La Sala, Annalisa Roberti, Nazar Zaki, Elarbi Badidi, Monia Taranta, Caterina Cinti
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms21051840

Does the Pre-Ovulatory Pig Oviduct Rule Sperm Capacitation In Vivo Mediating Transcriptomics of Catsper Channels?
Cited by: 8
Author(s): Cristina A. Martínez, Manuel Álvarez‐Rodríguez, Dominic Wright, Heriberto Rodríguez-Martinez
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0017198

Differential Expression of Non-Coding RNAs and Continuous Evolution of the X Chromosome in Testicular Transcriptome of Two Mouse Species
Cited by: 6
Author(s): David Homolka, Robert Ivánek, Jiřı́ Forejt, P Jansa
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0103998

In-Silico Prediction of Key Metabolic Differences between Two Non-Small Cell Lung Cancer Subtypes
Cited by: 10
Author(s): Alberto Rezola, Jon Pey, Ángel Rubio, Francisco J. Planes
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0138653

Transcriptomic and Epigenetic Profiling of the Lung of Influenza-Infected Pigs: A Comparison of Different Birth Weight and Susceptibility Groups
Cited by: 5
Author(s): Jamie M. Wilkinson, Rayna E. Gunvaldsen, Susan E. Detmer, Michael K. Dyck, Walter T. Dixon, G. R. Foxcroft, Graham Plastow, John C. S. Harding
Software Mentions: 1
Published: about 11 years ago

10.1186/s12967-021-03050-7

GSK2126458 has the potential to inhibit the proliferation of pancreatic cancer uncovered by bioinformatics analysis and pharmacological experiments
Cited by: 9
Author(s): Yangyang Feng, Yuguan Jiang, Hao Fang
Software Mentions: 1
Published: about 5 years ago

10.1186/1741-7007-11-93

Gene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis eleganspopulations
Cited by: 54
Author(s): Rita J. M. Volkers, L. Basten Snoek, Caspara J van Hellenberg Hubar, Renata Coopman, Wei Chen, Wentao Yang, Mark G. Sterken, Hinrich Schulenburg, Bart P. Braeckman, J.E. Kammenga
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0158367

miR-34 miRNAs Regulate Cellular Senescence in Type II Alveolar Epithelial Cells of Patients with Idiopathic Pulmonary Fibrosis
Cited by: 99
Author(s): Supparerk Disayabutr, Min Jung Kim, Seung‐Ick Cha, Gary Green, Ram P. Naikawadi, Kirk D. Jones, Jeffrey A. Golden, Aaron Schroeder, Michael A. Matthay, Jasleen Kukreja, David J. Erle, Harold R. Collard, Paul J. Wolters
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0237579

Untargeted high-resolution plasma metabolomic profiling predicts outcomes in patients with coronary artery disease
Cited by: 16
Author(s): Anurag Mehta, Chang Liu, Aditi Nayak, Ayman Samman Tahhan, Yi‐An Ko, Devinder S. Dhindsa, Jeong Hwan Kim, Salim S. Hayek, Laurence Sperling, Puja K. Mehta, Yan V. Sun, Karan Uppal, Dean P. Jones
Software Mentions: 1
Published: about 6 years ago

10.18632/aging.104195

Exploring the mechanism of resistance to sorafenib in two hepatocellular carcinoma cell lines
Cited by: 2
Author(s): Zhang Zhi, Cheng-Zu He, Yaqin Qin, Jianjun Liao, Shang-Tao Huang, Steven Mo, Hong-Mian Li, Jian Lin
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0172498

Characterization of long noncoding RNA and messenger RNA signatures in melanoma tumorigenesis and metastasis
Cited by: 21
Author(s): Siqi Wang, Wenliang Fan, Bing Wan, Min Tu, Feng Jin, Fang Liu, Haibo Xu, Ping Han
Software Mentions: 1
Published: over 9 years ago