bioconductor: limma | Projects | Ecosyste.ms: Papers

10.3389/fonc.2020.606928

Autophagy Gene Panel-Based Prognostic Model in Myelodysplastic Syndrome
Cited by: 2
Author(s): Ming-Jing Wang, Weiyi Liu, Xueying Wang, Yumeng Li, Haiyan Xiao, Richeng Quan, Gang Huang, Xiaomei Hu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0225137

Investigating gene expression profiles of whole blood and peripheral blood mononuclear cells using multiple collection and processing methods
Cited by: 38
Author(s): Aarti Gautam, Duncan Donohue, Allison Hoke, Stacy Ann Miller, Seshamalini Srinivasan, Bintu Sowe, Leanne Detwiler, Jesse Lynch, Michael W. Levangie, Rasha Hammamieh, Marti Jett
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0117963

Proteomic Analysis of Mitochondrial-Associated ER Membranes (MAM) during RNA Virus Infection Reveals Dynamic Changes in Protein and Organelle Trafficking
Cited by: 86
Author(s): Stacy M. Horner, Courtney Wilkins, Samantha Badil, Jason A. Iskarpatyoti, Michael Gale
Software Mentions: 1
Published: over 11 years ago

10.1186/s12885-021-08591-0

Integration of RNA-Seq and proteomics data identifies glioblastoma multiforme surfaceome signature
Cited by: 13
Author(s): Saiful Effendi Syafruddin, Wan Fahmi Wan Mohamad Nazarie, Nurshahirah Ashikin Moidu, Bee Hong Soon, M. Aiman Mohtar
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0034969

Assessment of Chitosan-Affected Metabolic Response by Peroxisome Proliferator-Activated Receptor Bioluminescent Imaging-Guided Transcriptomic Analysis
Cited by: 13
Author(s): Chia‐Hung Kao, Chien-Yun Hsiang, Tin-Yun Ho
Software Mentions: 1
Published: over 14 years ago

10.3389/fonc.2020.00208

Malignant Evaluation and Clinical Prognostic Values of m6A RNA Methylation Regulators in Glioblastoma
Cited by: 35
Author(s): Jianyang Du, Kezuo Hou, Shan Mi, Hang Ji, Shuai Ma, Yixu Ba, Shaoshan Hu, Rui Xie, Lei Chen
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-021-08637-3

Dysregulated paired related homeobox 1 impacts on hepatocellular carcinoma phenotypes
Cited by: 0
Author(s): Weronika Piorońska, Zeribe C. Nwosu, Mei Han, Michael Büttner, Matthias Ebert, Steven Dooley, Christoph Meyer
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2021.744251

Chronic Stress-Induced Gene Changes In Vitro and In Vivo: Potential Biomarkers Associated With Depression and Cancer Based on circRNA- and lncRNA-Associated ceRNA Networks
Cited by: 5
Author(s): Ting Zhou, Mingming Li, Zhijun Xiao, Jian Cai, Weiwei Zhao, Jingjing Duan, Zhen Yang, Zhijun Guo, Yitian Chen, Weijia Cai, Piaopiao Huang, Chaoyong He, Feng Xu
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0013319

Age and Diet Affect Gene Expression Profiles in Canine Liver Tissue
Cited by: 17
Author(s): Dong Yong Kil, Brittany M. Vester Boler, Carolyn J. Apanavicius, Lawrence B. Schook, Kelly S. Swanson
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0015613

Bioinformatics Analysis of Macrophages Exposed to Porphyromonas gingivalis: Implications in Acute vs. Chronic Infections
Cited by: 16
Author(s): Wenhan Yu, Han Hu, Qingde Zhou, Yu Xia, Salomon Amar
Software Mentions: 1
Published: over 15 years ago

10.3389/fonc.2021.659208

Low Expression Levels of SLC22A12 Indicates a Poor Prognosis and Progresses Clear Cell Renal Cell Carcinoma
Cited by: 4
Author(s): Jiaju Xu, Yuenan Liu, Jingchong Liu, Yanhong Shou, Xiong Zhang, Hairong Xiong, Tianbo Xu, Qi Wang, Di Liu, Huageng Liang, Hongmei Yang, Xiong Yang, Xiaoping Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2020.00639

Long Non-coding RNA TDRKH-AS1 Promotes Colorectal Cancer Cell Proliferation and Invasion Through the β-Catenin Activated Wnt Signaling Pathway
Cited by: 10
Author(s): Jiao Yang, Jialiang Zhou, Yecheng Jin, Yingxin Yang, Mingxu Song, Ling Zhang, Jiayan Zhou, Jiwei Zhang
Software Mentions: 1
Published: over 6 years ago

10.1080/2162402X.2017.1414129

Interleukin 7-expressing fibroblasts promote breast cancer growth through sustenance of tumor cell stemness
Cited by: 37
Author(s): Maximilian Boesch, Lucas Onder, Hung‐Wei Cheng, Mario Novković, Urs Mörbe, Sieghart Sopper, Guenther Gastl, Wolfram Jochum, Thomas Ruhstaller, Michael Knauer, Burkhard Ludewig
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0193943

Protease signaling through protease activated receptor 1 mediate nerve activation by mucosal supernatants from irritable bowel syndrome but not from ulcerative colitis patients
Cited by: 32
Author(s): Sabine Bühner, Hannes Hahne, Kerstin Hartwig, Qin Li, Sheila Vignali, Daniela Ostertag, Chen Meng, Gabriele Hörmannsperger, Breg Braak, Christian Pehl, Thomas Frieling, Giovanni Barbara, Roberto De Giorgio, İhsan Ekin Demir, Güralp O. Ceyhan, Florian Zeller, Guy E. Boeckxstaens, Dirk Haller, Bernhard Küster, Michael Schemann
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0208753

Investigating epigenetic effects of activation-induced deaminase in chronic lymphocytic leukemia
Cited by: 4
Author(s): Maria Schubert, Hubert Hackl, Franz Josef Gassner, Richard Greil, Roland Geisberger
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0155191

Maternal Whole Blood Gene Expression at 18 and 28 Weeks of Gestation Associated with Spontaneous Preterm Birth in Asymptomatic Women
Cited by: 47
Author(s): Yujing J. Heng, Craig E. Pennell, Sheila McDonald, Angela Vinturache, Jingxiong Xu, Mary W. F. Lee, Laurent Briollais, Andrew W. Lyon, Donna M. Slater, Alan D. Bocking, Lawrence de Koning, David M. Olson, Siobhan M. Dolan, Suzanne Tough, Stephen J. Lye
Software Mentions: 1
Published: about 10 years ago

10.3389/fonc.2020.00003

Effect of m6A RNA Methylation Regulators on Malignant Progression and Prognosis in Renal Clear Cell Carcinoma
Cited by: 42
Author(s): Jiawu Wang, Chengyao Zhang, Weiyang He, Xin Gou
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0176139

Hypomethylating agents synergize with irinotecan to improve response to chemotherapy in colorectal cancer cells
Cited by: 28
Author(s): Anup Sharma, Rajita Vatapalli, Eihab Abdelfatah, K. Wyatt McMahon, Zachary Kerner, Angela A. Guzzetta, Jasvinder Singh, Cynthia A. Zahnow, Stephen B. Baylin, Sashidhar R. Yerram, Yue Hu, Nilofer S. Azad, Nita Ahuja
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0135520

Pharmacokinetics and Pharmacodynamics with Extended Dosing of CC-486 in Patients with Hematologic Malignancies
Cited by: 52
Author(s): Eric Laille, Tao Shi, Guillermo Garcia‐Manero, Christopher R. Cogle, Steven D. Gore, Joel Hetzer, Keshava Kumar, Barry S. Skikne, Kyle J. MacBeth
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2407-14-54

A panel of genes methylated with high frequency in colorectal cancer
Cited by: 132
Author(s): Susan M. Mitchell, Jason P. Ross, Horace R. Drew, Thu Ho, Glenn Brown, Neil F. W. Saunders, Konsta Duesing, Michael Buckley, Robert Dunne, Iain Beetson, Keith N. Rand, Aidan McEvoy, Melissa L. Thomas, Rohan T. Baker, David Wattchow, Graeme P. Young, Trevor Lockett, Susanne K. Pedersen, Lawrence C. LaPointe, Peter L. Molloy
Software Mentions: 1
Published: over 12 years ago

10.1186/s12885-021-08166-z

Bioinformatics analysis of mRNA and miRNA microarray to identify the key miRNA-mRNA pairs in cisplatin-resistant ovarian cancer
Cited by: 3
Author(s): Xue Bai, Shupeng Li, Xiance Jin, Lifeng Liu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0228195

GPCR-induced YAP activation sensitizes fibroblasts to profibrotic activity of TGFβ1
Cited by: 19
Author(s): Katarina Zmajkovicova, Yasmina Bauer, Katalin Menyhart, Marie Schnoebelen, Diego Freti, Maxime Boucher, Bérengère Renault, R. O. Studer, Magdalena Birker‐Robaczewska, Axel Klenk, Oliver Nayler, John Gatfield
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0101802

Differences in miRNA Expression in Early Stage Lung Adenocarcinomas that Did and Did Not Relapse
Cited by: 27
Author(s): Mick D. Edmonds, Christine M. Eischen
Software Mentions: 1
Published: about 12 years ago

10.1007/s00401-019-02120-x

Antibody signatures in patients with histopathologically defined multiple sclerosis patterns
Cited by: 11
Author(s): Lidia Stork, David Ellenberger, Klemens Ruprecht, Markus Reindl, Tim Beißbarth, Tim Friede, Tania Kümpfel, Lisa Ann Gerdes, Mareike Gloth, Thomas Liman, Friedemann Paul, Wolfgang Brück, Imke Metz
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0046673

Dynamics of Membrane Potential Variation and Gene Expression Induced by Spodoptera littoralis, Myzus persicae, and Pseudomonas syringae in Arabidopsis
Cited by: 45
Author(s): Irene Bricchi, Cinzia M. Bertea, Andrea Occhipinti, Ivan A. Paponov, Massimo E. Maffei
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0001398

Molecular Characterization of Spontaneous Mesenchymal Stem Cell Transformation
Cited by: 148
Author(s): Daniel Rubio, Sílvia García, Maria F. Paz, Teresa de la Cueva, Luis A. López-Fernández, Alison C. Lloyd, Javier García‐Castro, António Bernad
Software Mentions: 1
Published: over 18 years ago

10.3389/fonc.2018.00218

Anti-Leukemic Properties of Histamine in Monocytic Leukemia: The Role of NOX2
Cited by: 21
Author(s): Roberta Kiffin, Hanna Grauers Wiktorin, Madeleine Nilsson, Johan Aurelius, Ebru Aydin, Brianna Lenox, Jonas A. Nilsson, Anders Ståhlberg, Fredrik B. Thorén, Kristoffer Hellstrand, Anna Martner
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0017840

Adjunctive Dexamethasone Affects the Expression of Genes Related to Inflammation, Neurogenesis and Apoptosis in Infant Rat Pneumococcal Meningitis
Cited by: 22
Author(s): C. Blaser, Matthias Wittwer, Denis Grandgirard, Stephen L. Leib
Software Mentions: 1
Published: over 15 years ago

10.3389/fonc.2021.671341

An Immune-Related lncRNA Expression Profile to Improve Prognosis Prediction for Lung Adenocarcinoma: From Bioinformatics to Clinical Word
Cited by: 10
Author(s): Boxiang Zhang, Rui Wang, Kai Li, Zi-Yang Peng, Dapeng Liu, Yunfeng Zhang, Liuzhi Zhou
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2021.720302

Validating HMMR Expression and Its Prognostic Significance in Lung Adenocarcinoma Based on Data Mining and Bioinformatics Methods
Cited by: 9
Author(s): Xia Li, Haiwei Zuo, Li Zhang, Qian Sun, Yong Xin, Longzhen Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2020.00107

miR-20a-5p/TGFBR2 Axis Affects Pro-inflammatory Macrophages and Aggravates Liver Fibrosis
Cited by: 31
Author(s): Xiu‐Tao Fu, Jingbo Qie, Qingchun Fu, Jiafeng Chen, Yinpeng Jin, Zhen–Bin Ding
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0061580

Transcriptional and Metabolic Changes Associated to the Infection by Fusarium verticillioides in Maize Inbreds with Contrasting Ear Rot Resistance
Cited by: 49
Author(s): Valeria A. Campos-Bermudez, Carolina M. Fauguel, Marcos A. Tronconi, Paula Casati, Daniel A. Presello, Carlos S. Andreo
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0023682

Comprehensive Assessment of Host Responses to Ionizing Radiation by Nuclear Factor-κB Bioluminescence Imaging-Guided Transcriptomic Analysis
Cited by: 22
Author(s): Chung‐Ta Chang, Lin H, Tin Yun Ho, Chia-Cheng Li, Hsin Yi Lo, Shih-Lu Wu, Yi Huang, Ji An Liang, Chien Yun Hsiang
Software Mentions: 1
Published: about 15 years ago

10.3389/fonc.2020.566365

Downregulation of miR-146b-3p Inhibits Proliferation and Migration and Modulates the Expression and Location of Sodium/Iodide Symporter in Dedifferentiated Thyroid Cancer by Potentially Targeting MUC20
Cited by: 13
Author(s): Shasha Hou, Xiaorui Xie, Jing Zhao, Cailan Wu, Ning Li, Zhaowei Meng, Chunquan Cai, Jian Tan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0050596

Identification of a Transcription Factor Controlling pH-Dependent Organic Acid Response in Aspergillus niger
Cited by: 22
Author(s): Lars Poulsen, Mikael Rørdam Andersen, Anna Eliasson Lantz, Jette Thykær
Software Mentions: 1
Published: over 13 years ago

10.1186/s12885-020-07598-3

Identification and validation of a six-gene signature associated with glycolysis to predict the prognosis of patients with cervical cancer
Cited by: 14
Author(s): Luya Cai, Chuan Hu, Shanshan Yu, Lixiao Liu, Xiaobo Yu, Jiahua Chen, Xuan Li, Fan Lin, Cheng Zhang, Wenfeng Li, Xiaojian Yan
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00109-016-1466-4

Gene expression profiling at birth characterizing the preterm infant with early onset infection
Cited by: 7
Author(s): Anne Hilgendorff, Anita Windhorst, Manuel Klein, Svetlin Tchatalbachev, Christine Windemuth-Kieselbach, Joachim Kreuder, Matthias Heckmann, Anna Gkatzoflia, Harald Ehrhardt, Josef Mysliwietz, M. Maier, Benjamin Izar, André Billion, Ludwig Gortner, Trinad Chakraborty, Hamid Hossain
Software Mentions: 1
Published: about 10 years ago

10.1186/s12885-021-08293-7

A circular RNAs dataset landscape reveals potential signatures for the detection and prognosis of early-stage lung adenocarcinoma
Cited by: 5
Author(s): Zhiying Chen, Jiahui Wei, Min Li, Yufei Zhao
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.103568

Methylation-dependent MCM6 repression induced by LINC00472 inhibits triple-negative breast cancer metastasis by disturbing the MEK/ERK signaling pathway
Cited by: 11
Author(s): Guoli Shao, Xulong Fan, Pusheng Zhang, Xuewen Li, Lei Huang, Shufeng Ji
Software Mentions: 1
Published: over 5 years ago

10.1007/s12031-014-0368-6

Different MicroRNA Profiles in Chronic Epilepsy Versus Acute Seizure Mouse Models
Cited by: 59
Author(s): Anita Kretschmann, Bénédicte Danis, Lidija Andonovic, Khalid Abnaof, Marijke van Rikxoort, Franziska Siegel, Manuela Mazzuferi, Patrice Godard, Étienne Hanon, Holger Fröhlich, Rafał M. Kamiński, Patrik Foerch, Alexander Pfeifer
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0013615

Functional Genomics of 5- to 8-Cell Stage Human Embryos by Blastomere Single-Cell cDNA Analysis
Cited by: 67
Author(s): Amparo Galán, David Montaner, Maria E. Póo, Diana Valbuena, Verónica Ruiz, Cristóbal Aguilar-Gallardo, Joaquı́n Dopazo, Carlos Simón
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12885-020-07590-x

Expression and prognostic analyses of the insulin-like growth factor 2 mRNA binding protein family in human pancreatic cancer
Cited by: 9
Author(s): Xiaoping Chen, Shu-Yi Hu, Chen Zhu, Xihu Qin
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0117164

Differential Adipose Tissue Gene Expression Profiles in Abacavir Treated Patients That May Contribute to the Understanding of Cardiovascular Risk: A Microarray Study
Cited by: 5
Author(s): Maryam Shahmanesh, Kenneth L. Phillips, Meg Boothby, Jeremy W. Tomlinson
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0206608

Regularization and grouping -omics data by GCA method: A transcriptomic case
Cited by: 3
Author(s): Monika Piwowar, Kinga A. Kocemba‐Pilarczyk, Piotr Piwowar
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0089596

Highly Immunoreactive IgG Antibodies Directed against a Set of Twenty Human Proteins in the Sera of Patients with Amyotrophic Lateral Sclerosis Identified by Protein Array
Cited by: 33
Author(s): Caroline May, Eckhard Nordhoff, Swaantje Casjens, Michael Turewicz, Martin Eisenacher, Ralf Gold, Thomas Brüning, Beate Pesch, Christian Stephan, Dirk Woitalla, Botond Penke, Tamás Janáky, Dezső Virók, László Szabó, J. Engelhardt, Helmut E. Meyer
Software Mentions: 1
Published: over 12 years ago

10.3389/fonc.2021.681777

Bioinformatics Analysis and Functional Verification of ADAMTS9-AS1/AS2 in Lung Adenocarcinoma
Cited by: 4
Author(s): Wei Liu, Wei Luo, Peijie Zhou, Yong Cheng, Liting Qian
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2020.00363

The Interaction Between lncRNA SNHG6 and hnRNPA1 Contributes to the Growth of Colorectal Cancer by Enhancing Aerobic Glycolysis Through the Regulation of Alternative Splicing of PKM
Cited by: 54
Author(s): Zhixian Lan, Xiang Yao, Kangyue Sun, Aimin Li, Side Liu, Xinke Wang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0097162

Changes in Gene Expression Associated with FTO Overexpression in Mice
Cited by: 32
Author(s): Myrte Merkestein, James S. McTaggart, Sheena Lee, Holger Kramer, Fiona McMurray, Mathilde Lafond, Lily Boutens, Roger D. Cox, Frances M. Ashcroft
Software Mentions: 1
Published: over 12 years ago

10.3390/nu12123864

An Integrated Analysis of miRNA and Gene Expression Changes in Response to an Obesogenic Diet to Explore the Impact of Transgenerational Supplementation with Omega 3 Fatty Acids
Cited by: 5
Author(s): Karla Fabiola Corral-Jara, Laura Cantini, Nathalie Poupin, Tao Ye, Jean‐Paul Rigaudière, Sarah de Saint Vincent, Alexandre Pinel, Béatrice Morio, Frédéric Capel
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0073024

IKKα/CHUK Regulates Extracellular Matrix Remodeling Independent of Its Kinase Activity to Facilitate Articular Chondrocyte Differentiation
Cited by: 38
Author(s): Eleonora Olivotto, Miguel Otero, Annalisa Astolfi, Daniela Platano, Angelo Facchini, Stefania Pagani, Flavio Flamigni, Andrea Facchini, Mary B. Goldring, Rosa Maria Borzı̀, Kenneth B. Marcu
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0018640

Identification of Prognostic Molecular Features in the Reactive Stroma of Human Breast and Prostate Cancer
Cited by: 137
Author(s): Anne Planche, Marina Bacac, Paolo Provero, Carlo Fusco, Mauro Delorenzi, Jean-Christophe Stehle, Ivan Stamenkovic
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0104650

A Novel Glycated Hemoglobin A1c-Lowering Traditional Chinese Medicinal Formula, Identified by Translational Medicine Study
Cited by: 10
Author(s): Hsin Yi Lo, Chien Yun Hsiang, Tsai‐Chung Li, Hui Huang, Jaw Chyun Chen, Tin Yun Ho
Software Mentions: 1
Published: about 12 years ago

10.3389/fonc.2021.647273

Development of a Prognostic Model for Ovarian Cancer Patients Based on Novel Immune Microenvironment Related Genes
Cited by: 8
Author(s): Wei Wang, Qianqian Wu, Ziheng Wang, Shengxiang Ren, Hanyu Shen, Wenyu Shi, Yunzhao Xu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0006952

Gene Expression Profiling in Cells with Enhanced γ-Secretase Activity
Cited by: 6
Author(s): Alexandra I. Magold, Matthias Cacquevel, Patrick C. Fraering
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0125013

Characterization of Differentially Expressed Genes Involved in Pathways Associated with Gastric Cancer
Cited by: 54
Author(s): Hao Li, Beiqin Yu, Jianfang Li, Liping Su, Min Yan, Jun Zhang, Chen Li, Zhenggang Zhu, Bingya Liu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0002548

Novel MicroRNA Candidates and miRNA-mRNA Pairs in Embryonic Stem (ES) Cells
Cited by: 48
Author(s): Peili Gu, Jeffrey G. Reid, Xiaolian Gao, Chad A. Shaw, Chad J. Creighton, Peter L. Tran, Xiaochuan Zhou, Rafal Drabek, David L. Steffen, David M. Hoang, Michelle K. Weiss, A.O. Naghavi, Jad El-daye, Mahjabeen F. Khan, Glen B. Legge, David A. Wheeler, Richard A. Gibbs, Jonathan Miller, Austin J. Cooney, Preethi H. Gunaratne
Software Mentions: 1
Published: about 18 years ago

10.1371/journal.pone.0222513

PBMCs transcriptome profiles identified breed-specific transcriptome signatures for PRRSV vaccination in German Landrace and Pietrain pigs
Cited by: 9
Author(s): M. S. Islam, Christiane Neuhoff, Sharmin Aqter Rony, Christine Große‐Brinkhaus, Muhammad Jasim Uddin, Michael Hölker, Dawit Tesfaye, Ernst Tholen, K. Schellander, Maren Julia Pröll‐Cornelissen
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0193335

Molecular adaptations to phosphorus deprivation and comparison with nitrogen deprivation responses in the diatom Phaeodactylum tricornutum
Cited by: 68
Author(s): Leila Alipanah, Per Winge, Jens Rohloff, Javad Najafi, Tore Brembu, Atle M. Bones
Software Mentions: 1
Published: over 8 years ago

10.3389/fonc.2019.00710

Sperm Protein Antigen 17 Expression Correlates With Lymph Node Metastasis and Worse Overall Survival in Patients With Breast Cancer
Cited by: 6
Author(s): Yuting Zhou, Juanjuan Qiu, Yao Wang, Pengcheng Liu, Qing Lv, Zhenggui Du
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0013606

Yeast Biological Networks Unfold the Interplay of Antioxidants, Genome and Phenotype, and Reveal a Novel Regulator of the Oxidative Stress Response
Cited by: 15
Author(s): José M. Otero, Manos A. Papadakis, D.B.R.K. Gupta Udatha, Jens Nielsen, Gianni Panagiotou
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0032875

Skin Regeneration in Adult Axolotls: A Blueprint for Scar-Free Healing in Vertebrates
Cited by: 199
Author(s): Ashley W. Seifert, James R. Monaghan, S. Randal Voss, Malcolm Maden
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0128230

Genome-Wide Transcriptome Directed Pathway Analysis of Maternal Pre-Eclampsia Susceptibility Genes
Cited by: 52
Author(s): Hannah Ee Juen Yong, Phillip E. Melton, Matthew P. Johnson, Katy A. Freed, Bill Kalionis, Padma Murthi, Shaun P. Brennecke, Rosemary Keogh, Eric K. Moses
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0149263

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis
Cited by: 18
Author(s): Michael Roemer, Johannes Eichner, Andreas Dräger, Clemens Wrzodek, Finja Wrzodek, Andreas Zell
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0066278

Differentially Expressed Androgen-Regulated Genes in Androgen-Sensitive Tissues Reveal Potential Biomarkers of Early Prostate Cancer
Cited by: 28
Author(s): Dogus Murat Altintas, Nathalie Allioli, Myriam Decaussin, Simon Bernard, A. Ruffion, Jacques Samarut, Virginie Vlaeminck-Guillem
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0124340

Differentially Expressed MicroRNAs in Postpartum Breast Cancer in Hispanic Women
Cited by: 22
Author(s): J. Muñoz-Rodríguez, Lukáš Vrba, Bernard W. Futscher, Chengcheng Hu, Ian K. Komenaka, María Mercedes Meza-Montenegro, Luis Enrique Gutiérrez-Millán, Adrián Daneri‐Navarro, Patricia A. Thompson, Marı́a Elena Martı́nez
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2407-10-627

Tumour auto-antibody screening: performance of protein microarrays using SEREX derived antigens
Cited by: 19
Author(s): René Stempfer, Parvez Syed, Klemens Vierlinger, Rudolf Pichler, Eckart Meese, Petra Leidinger, Nicole Ludwig, Albert Kriegner, Christa Nöhammer, Andreas Weinhäusel
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0012882

Gene Expression Profiles of Colonic Mucosa in Healthy Young Adult and Senior Dogs
Cited by: 7
Author(s): Dong Yong Kil, Brittany M. Vester Boler, Carolyn J. Apanavicius, Lawrence B. Schook, Kelly S. Swanson
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0133607

Transcriptional Response of Human Neurospheres to Helper-Dependent CAV-2 Vectors Involves the Modulation of DNA Damage Response, Microtubule and Centromere Gene Groups
Cited by: 9
Author(s): Stefania Piersanti, Romina Burla, Valerio Licursi, Catarina Brito, Mattia La Torre, Paula M. Alves, Daniel Simão, Carla Mottini, Sara Salinas, Rodolfo Negri, Enrico Tagliafico, Eric J. Kremer, Isabella Saggio
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0034659

Major Cellular and Physiological Impacts of Ocean Acidification on a Reef Building Coral
Cited by: 234
Author(s): Paulina Kaniewska, Paul Campbell, David I. Kline, Mauricio Rodríguez-Lanetty, David J. Miller, Sophie Dove, Ove Høegh-Guldberg
Software Mentions: 1
Published: over 14 years ago

10.1186/s12885-018-4633-x

Interleukin 8 is a biomarker of telomerase inhibition in cancer cells
Cited by: 3
Author(s): Peter D. Solomon, Yujuan Dong, Shaillay Kumar Dogra, Romi Gupta
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.67624

Genome-wide CRISPRi screening identifies OCIAD1 as a prohibitin client and regulatory determinant of mitochondrial Complex III assembly in human cells
Cited by: 15
Author(s): Maxence Le Vasseur, Jonathan R. Friedman, Marco Jost, Jiawei Xu, Justin Yamada, Martin Kampmann, Max A. Horlbeck, Michelle Salemi, Brett S. Phinney, Jonathan S. Weissman, Jodi Nunnari
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0077627

PhysioSpace: Relating Gene Expression Experiments from Heterogeneous Sources Using Shared Physiological Processes
Cited by: 17
Author(s): Michael Lenz, Bernhard Schuldt, Franz‐Josef Müller, Andreas Schuppert
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0161129

COPD Exacerbation Biomarkers Validated Using Multiple Reaction Monitoring Mass Spectrometry
Cited by: 17
Author(s): Janice M. Leung, Virginia Chen, Zsuzsanna Hollander, Darlene Dai, Scott J. Tebbutt, Shawn D. Aaron, Kathy L. Vandemheen, Stephen I. Rennard, J. Mark FitzGerald, Prescott G. Woodruff, Stephen C. Lazarus, John E. Connett, Harvey O. Coxson, Bruce E. Miller, Christoph H. Borchers, Bruce M. McManus, Raymond T. Ng, Don D. Sin
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0002141

Distinctive Patterns of MicroRNA Expression Associated with Karyotype in Acute Myeloid Leukaemia
Cited by: 250
Author(s): Amanda Dixon‐McIver, Philip East, Charles A. Mein, Jean‐Baptiste Cazier, Gael Molloy, Tracy Chaplin, T. Andrew Lister, Bryan D. Young, Silvana Debernardi
Software Mentions: 1
Published: over 18 years ago

10.3389/fonc.2021.608113

Integrative Analysis of the Expression of SIGLEC Family Members in Lung Adenocarcinoma via Data Mining
Cited by: 5
Author(s): Haiyan Zhang, Yong-Fei Xie, Hu Zhang, Hong Yu, Xiang Xie, Yingchun Ye, Wangyang Xu, Siji Nian, Qing Yuan
Software Mentions: 1
Published: over 5 years ago

Projects: bioconductor: limma

Science Score: 78/100

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Papers Mentioning limma 7,776