bioconductor: limma | Projects | Ecosyste.ms: Papers

10.3390/ijms21176092

Metabolite Patterns in Human Myeloid Hematopoiesis Result from Lineage-Dependent Active Metabolic Pathways
Cited by: 4
Author(s): Lars Kaiser, Helga Weinschrott, Isabel Quint, Markus Blaess, René Csuk, Manfred Jung, Matthias Kohl, Hans‐Peter Deigner
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.23190

Different TCR-induced T lymphocyte responses are potentiated by stiffness with variable sensitivity
Cited by: 135
Author(s): Michael Saitakis, Stéphanie Dogniaux, Christel Goudot, Nathalie Bufi, Sophie Asnacios, Mathieu Maurin, Clotilde Randriamampita, Atef Asnacios, Claire Hivroz
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms21186660

The brlA Gene Deletion Reveals That Patulin Biosynthesis Is Not Related to Conidiation in Penicillium expansum
Cited by: 7
Author(s): Chrystian Zetina-Serrano, Ophélie Rocher, Claire Naylies, Yannick Lippi, Isabelle P. Oswald, Sophie Lorber, Olivier Puel
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21186858

Preventive Triple Gene Therapy Reduces the Negative Consequences of Ischemia-Induced Brain Injury after Modelling Stroke in a Rat
Cited by: 13
Author(s): Vage Markosyan, Zufar Z. Safiullov, Andrei Izmailov, Filip Fadeev, Mikhail Sokolov, M. S. Kuznetsov, Д. А. Трофимов, Evgeny Kim, Grayr Kundakchyan, Airat Gibadullin, И. И. Салафутдинов, Л. Ф. Нуруллин, Farid Vagizovich Bashirov, Р. Р. Исламов
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-85471-4

Global network analysis in Schizosaccharomyces pombe reveals three distinct consequences of the common 1-kb deletion causing juvenile CLN3 disease
Cited by: 6
Author(s): Christopher J. Minnis, StJohn Townsend, Julia Petschnigg, Elisa Tinelli, Jürg Bähler, Claire Russell, Sara Mole
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.48625

PUMILIO, but not RBMX, binding is required for regulation of genomic stability by noncoding RNA NORAD
Cited by: 50
Author(s): Mahmoud M. Elguindy, Florian Kopp, Mohammad Goodarzi, Frederick Rehfeld, Anu Thomas, Tsung Cheng Chang, Joshua T. Mendell
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-85237-y

Genome-wide identification and characterization of circular RNA in resected hepatocellular carcinoma and background liver tissue
Cited by: 5
Author(s): Yuki Sunagawa, Suguru Yamada, Fuminori Sonohara, Keisuke Kurimoto, Nobutake Tanaka, Yunosuke Suzuki, Yoshikuni Inokawa, Hideki Takami, Masamichi Hayashi, Mitsuro Kanda, Chie Tanaka, Goro Nakayama, Masahiko Koike, Yasuhiro Kodera
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21196988

Proteomics Analysis of Plasma Membrane Fractions of the Root, Leaf, and Flower of Rice
Cited by: 2
Author(s): Yukimoto Iwasaki, Takafumi Itoh, Yusuke Hagi, Sakura Matsuta, Aki Nishiyama, Genki Chaya, Yuki Kobayashi, Kotaro Miura, Setsuko Komatsu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-84612-z

Validation of a multicellular tumor microenvironment system for modeling patient tumor biology and drug response
Cited by: 4
Author(s): Devin G. Roller, Stephen A. Hoang, Kristopher D. Rawls, Katherine A. Owen, Michael B. Simmers, Robert A. Figler, Julia Wulfkuhle, Emanuel F. Petricoin, Brian R. Wamhoff, Daniel Gioeli
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.10592

TRAF2 regulates TNF and NF-κB signalling to suppress apoptosis and skin inflammation independently of Sphingosine kinase 1
Cited by: 70
Author(s): Nima Etemadi, Michaël Chopin, Holly Anderton, Maria C. Tanzer, James A Rickard, Waruni Abeysekera, Cathrine Hall, Sukhdeep K Spall, Bing Wang, Ye Xiong, Timothy Hla, Stuart M. Pitson, Claudine S. Bonder, Wendy Wei-Lynn Wong, Matthias Ernst, Gordon K. Smyth, David L. Vaux, Stephen L. Nutt, Ueli Nachbur, John Silke
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms21217812

Circular RNAs and Their Linear Transcripts as Diagnostic and Prognostic Tissue Biomarkers in Prostate Cancer after Prostatectomy in Combination with Clinicopathological Factors
Cited by: 6
Author(s): Hannah Rochow, Monika Jung, Sabine Weickmann, Bernhard Ralla, Carsten Stephan, Sefer Elezkurtaj, Ergin Kilic, Zhao Zhi, Klaus Jung, Annika Fendler, Antonia Franz
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12967-019-02178-x

ROR2 induces cell apoptosis via activating IRE1α/JNK/CHOP pathway in high-grade serous ovarian carcinoma in vitro and in vivo
Cited by: 12
Author(s): Rui Li, Tianfeng Liu, Juanjuan Shi, Wenqing Luan, Wei Xuan, Jiangtao Yu, Hongluan Mao, Peishu Liu
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21228479

Establishment of a Gene Signature to Predict Prognosis for Patients with Lung Adenocarcinoma
Cited by: 17
Author(s): Zhaodong Li, Fanghua Qi, Fan Li
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21228759

Phylostratic Shift of Whole-Genome Duplications in Normal Mammalian Tissues towards Unicellularity Is Driven by Developmental Bivalent Genes and Reveals a Link to Cancer
Cited by: 27
Author(s): Olga V. Anatskaya, Alexander E. Vinogradov, Ninel M. Vainshelbaum, Alessandro Giuliani, Jekaterina Ērenpreisa
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.14926

Polycomb enables primitive endoderm lineage priming in embryonic stem cells
Cited by: 27
Author(s): Robert S. Illingworth, Jurriaan Hölzenspies, Fabian V Roske, Wendy A. Bickmore, Joshua M. Brickman
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.07839

Functional evidence implicating chromosome 7q22 haploinsufficiency in myelodysplastic syndrome pathogenesis
Cited by: 14
Author(s): Jasmine C. Wong, Kelley Weinfurtner, Maria del pilar Alzamora, Scott C. Kogan, Michael R. Burgess, Yan Zhang, Joy Nakitandwe, Jing Ma, Jinjun Cheng, Shann-Ching Chen, Theodore Ho, Johanna Flach, Damien Reynaud, Emmanuelle Passegué, James R. Downing, Kevin Shannon
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms21239051

Kisspeptin Influences the Reproductive Axis and Circulating Levels of microRNAs in Senegalese Sole
Cited by: 15
Author(s): Catarina C Oliveira, Elvira Fatsini, Ignacio Fernández, Catarina Anjos, François Chauvigné, Joan Cerdà, Robin Mjelle, Jorge M.O. Fernandes, Elsa Cabrita
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.52535

Tuberculosis-associated IFN-I induces Siglec-1 on tunneling nanotubes and favors HIV-1 spread in macrophages
Cited by: 25
Author(s): Maeva Dupont, Shanti Souriant, Luciana Balboa, Thien‐Phong Vu Manh, Karine Pingris, Stella Rousset, Céline Cougoule, Yoann Rombouts, Renaud Poincloux, Myriam Ben Neji, Carolina Allers, Deepak Kaushal, Marcelo J. Kuroda, Susana Benet, Javier Martínez-Picado, Nuria Izquierdo‐Useros, Marı́a del Carmen Sasiain, Isabelle Maridonneau‐Parini, Olivier Neyrolles, Christel Vérollet, Geanncarlo Lugo-Villarino
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-85044-5

Integrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome
Cited by: 4
Author(s): Robert E. Moore, Bhanwar Lal Puniya, Robert Powers, Chittibabu Guda, Kenneth W. Bayles, David B. Berkowitz, Tomáš Helikar
Software Mentions: 1
Published: over 5 years ago

10.1523/ENEURO.0310-19.2019

TrkB Signaling Influences Gene Expression in Cortistatin-Expressing Interneurons
Cited by: 8
Author(s): Kristen R. Maynard, Alisha Kardian, Joanne M. Hill, Yishan Mai, Brianna K. Barry, Henry L. Hallock, Andrew E. Jaffe
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.38430

Thalidomide promotes degradation of SALL4, a transcription factor implicated in Duane Radial Ray syndrome
Cited by: 282
Author(s): Katherine A. Donovan, Jian An, Radosław P. Nowak, Jingting Yuan, Emma C. Fink, Bethany C. Berry, Benjamin L. Ebert, Eric S. Fischer
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.58396

A cross-kingdom conserved ER-phagy receptor maintains endoplasmic reticulum homeostasis during stress
Cited by: 116
Author(s): Madlen Stephani, Lorenzo Picchianti, Alexander Gajic, Rebecca Beveridge, Emilio Skarwan, Víctor Sánchez de Medina Hernández, Azadeh Mohseni, Marion Clavel, Yonglung Zeng, Christin Naumann, Mateusz Matuszkiewicz, Eleonora Turco, Christian Loefke, Baiying Li, Gerhard Dürnberger, Michael Schutzbier, Hsiao Tieh Chen, Alibek Abdrakhmanov, Adriana Savova, Khong Sam Chia, Armin Djamei, Irene Schaffner, Steffen Abel, Liwen Jiang, Karl Mechtler, Fumiyo Ikeda, Sascha Martens, Tim Clausen, Yasin Dagdas
Software Mentions: 1
Published: about 6 years ago

10.1186/s12967-015-0506-0

DNA methylation analysis of phenotype specific stratified Indian population
Cited by: 43
Author(s): Harish Rotti, Sandeep Mallya, Shama Prasada Kabekkodu, Sanjiban Chakrabarty, Sameer Bhale, Ramachandra Bharadwaj, Balakrishna K Bhat, Amrish P Dedge, Vikram Ram Dhumal, G G Gangadharan, P. M. Gopinath, Periyasamy Govindaraj, Kalpana Joshi, Paturu Kondaiah, Sreekumaran Nair, SN Venugopalan Nair, Jayakrishna Nayak, B V Prasanna, Pooja Shintre, Mayura Sule, Kumarasamy Thangaraj, Bhushan Patwardhan, Marthanda Varma Sankaran Valiathan, Kapaettu Satyamoorthy
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.10769

Mitochondrial DNA copy number variation across human cancers
Cited by: 363
Author(s): Ed Reznik, Martin L. Miller, Yasin Şenbabaoğlu, Nadeem Riaz, Judy Sarungbam, Satish K. Tickoo, Hikmat Al‐Ahmadie, William Lee, Venkatraman Seshan, A. Ari Hakimi, Chris Sander
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-019-47774-5

Comprehensive Proteomic Analysis Reveals Intermediate Stage of Non-Lesional Psoriatic Skin and Points out the Importance of Proteins Outside this Trend
Cited by: 23
Author(s): Edit Szél, Renáta Bozó, Éva Hunyadi‐Gulyás, Máté Manczinger, Kornélia Szabó, Lajos Kemény, Zsuzsanna Bata‐Csörgő, Gergely Groma
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.69142

An engineered transcriptional reporter of protein localization identifies regulators of mitochondrial and ER membrane protein trafficking in high-throughput CRISPRi screens
Cited by: 10
Author(s): Robert Coukos, David Yao, Mateo Lopez Sanchez, Eric T. Strand, Meagan E. Olive, Namrata D. Udeshi, Jonathan S. Weissman, Steven A. Carr, Michael C. Bassik, Alice Y. Ting
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-82834-9

LINC00665 promotes the progression of acute myeloid leukemia by regulating the miR-4458/DOCK1 pathway
Cited by: 10
Author(s): Xiaoyu Yang, Yan Wang, Sulei Pang, Xiaojie Li, Panpan Wang, Ruojin Ma, Yunyun Ma, Chunge Song
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.08752

Layer 2/3 pyramidal cells in the medial prefrontal cortex moderate stress induced depressive behaviors
Cited by: 61
Author(s): Prerana Shrestha, Awni Mousa, Nathaniel Heintz
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.31299

Therapeutic effects of telomerase in mice with pulmonary fibrosis induced by damage to the lungs and short telomeres
Cited by: 80
Author(s): Juan Manuel Povedano, Paula Martínez, Rosa Serrano, Águeda M. Tejera, Gonzalo Goméz-López, María Bobadilla, Juana M. Flores, Fàtima Bosch, Marı́a A. Blasco
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.12116

Hepatocyte Growth Factor-mediated satellite cells niche perturbation promotes development of distinct sarcoma subtypes
Cited by: 5
Author(s): Deborah Morena, Nicola Maestro, Francesca Bersani, Paolo E. Forni, Marcello Francesco Lingua, Valentina Foglizzo, Petar Šćepanović, Silvia Miretti, Alessandro Morotti, Jack F. Shern, Javed Khan, Ugo Ala, Paolo Provero, Valentina Sala, Tiziana Crepaldi, Patrizia Gasparini, Michela Casanova, Andrea Ferrari, Gabriella Sozzi, Roberto Chiarle, Carola Ponzetto, Riccardo Taulli
Software Mentions: 1
Published: over 10 years ago

10.1186/s12967-019-2042-9

Metabolic profiling reveals distinct metabolic alterations in different subtypes of pituitary adenomas and confers therapeutic targets
Cited by: 8
Author(s): Jiaxuan Feng, Hua Gao, Qi Zhang, Yang Zhou, Chuzhong Li, Sida Zhao, Liu Hong, Jinjin Yang, Shuyu Hao, Hong Wan, Zhengping Zhuang, Guowang Xu, Yazhou Zhang
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms22041523

Multiomics Integration in Skin Diseases with Alterations in Notch Signaling Pathway: PlatOMICs Phase 1 Deployment
Cited by: 8
Author(s): Lucas André Cavalcanti Brandão, Paola Maura Tricarico, Rossella Gratton, Almerinda Agrelli, Luisa Zupin, Haissam Abou-Saleh, Romero Marinho de Moura, Sérgio Crovella
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.03115

A receptor-like kinase mutant with absent endodermal diffusion barrier displays selective nutrient homeostasis defects
Cited by: 180
Author(s): Alexandre Pfister, Marie Barberon, Julien Alassimone, Lothar Kalmbach, Yuree Lee, Joop E. M. Vermeer, Misako Yamazaki, Guowei Li, Christophe Maurel, Junpei Takano, Takehiro Kamiya, David E. Salt, Daniele Roppolo, Niko Geldner
Software Mentions: 1
Published: about 12 years ago

10.7554/eLife.51620

An atypical DYRK kinase connects quorum-sensing with posttranscriptional gene regulation in Trypanosoma brucei
Cited by: 28
Author(s): Mathieu Cayla, Lindsay McDonald, Paula MacGregor, Keith R. Matthews
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.12102

Structural and kinetic analysis of the COP9-Signalosome activation and the cullin-RING ubiquitin ligase deneddylation cycle
Cited by: 72
Author(s): Ruzbeh Mosadeghi, Kurt M. Reichermeier, Martin Winkler, Anne Schreiber, Justin M. Reitsma, Yaru Zhang, Florian Stengel, Junyue Cao, Minsoo Kim, Michael J. Sweredoski, Sonja Hess, Alexander Leitner, Ruedi Aebersold, Matthias Peter, Raymond J. Deshaies, Radoslav I. Enchev
Software Mentions: 1
Published: over 10 years ago

10.1186/s12967-021-03006-x

Identification of proteins associated with development of psoriatic arthritis in peripheral blood mononuclear cells: a quantitative iTRAQ-based proteomics study
Cited by: 7
Author(s): Jie Zhu, Ling Han, Ruilai Liu, Zhenghua Zhang, Qiong Huang, Xu Fang, Yang Ke, Guangjian Huang, Zheng Zhang, Nikhil Yawalkar, Hui Deng, Kexiang Yan
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.69578

Innate immune activation by checkpoint inhibition in human patient-derived lung cancer tissues
Cited by: 15
Author(s): Teresa W.‐M. Fan, Richard M. Higashi, Hai Song, Saeed Daneshmandi, Angela Mahan, Matthew S. Purdom, Thérèse Bocklage, Thomas Pittman, Daheng He, Chi Wang, Andrew N. Lane
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.45457

Targeted degradation of aberrant tau in frontotemporal dementia patient-derived neuronal cell models
Cited by: 171
Author(s): M. Catarina Silva, Fleur M. Ferguson, Quan Cai, Katherine A. Donovan, Ghata Nandi, Debasis Patnaik, Tinghu Zhang, Hai‐Tsang Huang, Diane Lucente, Bradford C. Dickerson, Timothy J. Mitchison, Eric S. Fischer, Nathanael S. Gray, Stephen J. Haggarty
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.25474

A lectin receptor kinase as a potential sensor for extracellular nicotinamide adenine dinucleotide in Arabidopsis thaliana
Cited by: 67
Author(s): Chenggang Wang, Mingqi Zhou, Xudong Zhang, Jin Yao, Yanping Zhang, Zhonglin Mou
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-021-83591-5

CSF proteome in multiple sclerosis subtypes related to brain lesion transcriptomes
Cited by: 7
Author(s): Maria L. Elkjaer, Arkadiusz Nawrocki, Tim Kacprowski, Pernille Lassen, Anja Hviid Simonsen, Romain Marignier, Tobias Sejbæk, Helle Hvilsted Nielsen, Lene Wermuth, Alyaa Yakut Rashid, Peter Høgh, Finn Sellebjerg, Richard Reynolds, Jan Baumbach, Martin R. Larsen, Zsolt Illés
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.26435

Ubiquilin1 promotes antigen-receptor mediated proliferation by eliminating mislocalized mitochondrial proteins
Cited by: 34
Author(s): Alexandra M Whiteley, Miguel A. Prado, Ivan Peng, Alexander R. Abbas, Benjamin Haley, João A. Paulo, Mike Reichelt, Anand Kumar Katakam, Meredith Sagolla, Zora Modrušan, Dong Yun Lee, Merone Roose‐Girma, Donald S. Kirkpatrick, Brent McKenzie, Steven P. Gygi, Daniel Finley, Eric J. Brown
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.15316

Enhancer regions show high histone H3.3 turnover that changes during differentiation
Cited by: 84
Author(s): Aimée M. Deaton, Mariluz Gómez-Rodríguez, Jakub Mieczkowski, Michael Y. Tolstorukov, Sharmistha Kundu, Ruslan I. Sadreyev, Lars Jansen, Robert E. Kingston
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.16432

Interferon alpha-inducible protein 6 regulates NRASQ61K-induced melanomagenesis and growth
Cited by: 21
Author(s): Romi Gupta, Matteo Forloni, Malik Bisserier, Shaillay Kumar Dogra, Qinghua Yang, Narendra Wajapeyee
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-021-83138-8

MUTYH is associated with hepatocarcinogenesis in a non-alcoholic steatohepatitis mouse model
Cited by: 4
Author(s): Hiroki Sakamoto, Koji Miyanishi, Shingo Tanaka, Ryo Itô, Kota Hamaguchi, Akira Sakurada, Masanori Sato, Tomohiro Kubo, Takahiro Osuga, Kazuyuki Murase, Kohichi Takada, Yusaku Nakabeppu, Masayoshi Kobune, Junji Kato
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22105225

Distinct Concentration-Dependent Molecular Pathways Regulate Bone Cell Responses to Cobalt and Chromium Exposure from Joint Replacement Prostheses
Cited by: 4
Author(s): Karan M. Shah, Mark J. Dunning, Alison Gartland, JM Wilkinson
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.67624

Genome-wide CRISPRi screening identifies OCIAD1 as a prohibitin client and regulatory determinant of mitochondrial Complex III assembly in human cells
Cited by: 15
Author(s): Maxence Le Vasseur, Jonathan R. Friedman, Marco Jost, Jiawei Xu, Justin Yamada, Martin Kampmann, Max A. Horlbeck, Michelle Salemi, Brett S. Phinney, Jonathan S. Weissman, Jodi Nunnari
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22115547

Mutant p53 Mediates Sensitivity to Cancer Treatment Agents in Oesophageal Adenocarcinoma Associated with MicroRNA and SLC7A11 Expression
Cited by: 7
Author(s): Ann-Kathrin Eichelmann, George C. Mayne, Karen Chiam, Steven L. Due, Isabell Bastian, Frederike Butz, Tingting Wang, Pamela J. Sykes, Nicholas J. Clemons, David S. Liu, Michael Michael, Christos S. Karapetis, Richard Hummel, David I. Watson, Damian J. Hussey
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-79611-5

Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance
Cited by: 8
Author(s): Jan Félix, Claire Siebert, Julia Novion Ducassou, Jérôme Nigou, Pierre Garcia, Angélique Fraudeau, Karine Huard, Caroline Mas, Céline Brochier-Armanet, Yohann Couté, Irina Gutsche, Patricia Renesto
Software Mentions: 1
Published: over 5 years ago

10.1007/s12031-014-0368-6

Different MicroRNA Profiles in Chronic Epilepsy Versus Acute Seizure Mouse Models
Cited by: 59
Author(s): Anita Kretschmann, Bénédicte Danis, Lidija Andonovic, Khalid Abnaof, Marijke van Rikxoort, Franziska Siegel, Manuela Mazzuferi, Patrice Godard, Étienne Hanon, Holger Fröhlich, Rafał M. Kamiński, Patrik Foerch, Alexander Pfeifer
Software Mentions: 1
Published: about 12 years ago

10.1007/s00109-016-1466-4

Gene expression profiling at birth characterizing the preterm infant with early onset infection
Cited by: 7
Author(s): Anne Hilgendorff, Anita Windhorst, Manuel Klein, Svetlin Tchatalbachev, Christine Windemuth-Kieselbach, Joachim Kreuder, Matthias Heckmann, Anna Gkatzoflia, Harald Ehrhardt, Josef Mysliwietz, M. Maier, Benjamin Izar, André Billion, Ludwig Gortner, Trinad Chakraborty, Hamid Hossain
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-020-79598-z

Blocking PDGF-CC signaling ameliorates multiple sclerosis-like neuroinflammation by inhibiting disruption of the blood–brain barrier
Cited by: 13
Author(s): Manuel Zeitelhofer, Milena Z. Adzemovic, Christine Moessinger, Christina Stefanitsch, Carina Strell, Lars Muhl, Lou Brundin, Linda Fredriksson, Tomas Olsson, Ulf Eriksson, Ingrid Nilsson
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47581-y

Effect of immunosuppression in miRNAs from extracellular vesicles of colorectal cancer and their influence on the pre-metastatic niche
Cited by: 11
Author(s): Valeria Tubita, Joan Seguí-Barber, Juan José Lozano, Elisenda Bañón-Maneus, Jordi Rovira, David Cucchiari, Daniel Moya-Rull, Federico Oppenheimer, Hernando del Portillo, Josep M. Campistol, Fritz Diekmann, María José Ramírez-Bajo, Ignacio Revuelta
Software Mentions: 1
Published: about 7 years ago

10.1080/2162402X.2017.1414129

Interleukin 7-expressing fibroblasts promote breast cancer growth through sustenance of tumor cell stemness
Cited by: 37
Author(s): Maximilian Boesch, Lucas Onder, Hung‐Wei Cheng, Mario Novković, Urs Mörbe, Sieghart Sopper, Guenther Gastl, Wolfram Jochum, Thomas Ruhstaller, Michael Knauer, Burkhard Ludewig
Software Mentions: 1
Published: over 8 years ago

10.1038/s41389-018-0032-z

Efficacy of the highly selective focal adhesion kinase inhibitor BI 853520 in adenocarcinoma xenograft models is linked to a mesenchymal tumor phenotype
Cited by: 36
Author(s): Ulrich Hirt, Irene C. Waizenegger, Norbert Schweifer, Christian Haslinger, Daniel Gerlach, Jürgen Braunger, Ulrike Weyer-Czernilofsky, Heinz Stadtmüller, Ioannis Sapountzis, Gerd Bader, Andreas Zoephel, Bojan Bister, Anke Baum, Jens Quant, Norbert Kraut, Pilar Garin‐Chesa, Günther R. Adolf
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-78207-3

Maternal proteomic profiling reveals alterations in lipid metabolism in late-onset fetal growth restriction
Cited by: 9
Author(s): Cristina Paulés, L. Youssef, J. Miranda, F. Crovetto, Josep Marı́a Estanyol, Guerau Fernández, F. Crispi, E. Gratacós
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-77732-5

Spontaneous intake of essential oils after a negative postnatal experience has long-term effects on blood transcriptome in chickens
Cited by: 6
Author(s): Aline Foury, Anne Collin, Jean‐Christophe Helbling, Christine Leterrier, Marie‐Pierre Moisan, Laurence Guilloteau
Software Mentions: 1
Published: almost 6 years ago

10.1038/oncsis.2017.33

Cyclin-dependent kinase 7 is a therapeutic target in high-grade glioma
Cited by: 52
Author(s): Sameer A. Greenall, Yi Chieh Lim, Camilla B. Mitchell, Kathleen S. Ensbey, Brett W. Stringer, Alexander L. Wilding, Geraldine M. O’Neill, Kerrie L. McDonald, Daniel J. Gough, Bryan W. Day, Terrance G. Johns
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms22158205

Identification of an IL-22-Dependent Gene Signature as a Pharmacodynamic Biomarker
Cited by: 1
Author(s): Julie Rae, Jason A. Hackney, Kevin Huang, Mary E. Keir, Ann Herman
Software Mentions: 1
Published: about 5 years ago

10.1038/s41388-018-0577-5

Integrative network biology analysis identifies miR-508-3p as the determinant for the mesenchymal identity and a strong prognostic biomarker of ovarian cancer
Cited by: 36
Author(s): Linjie Zhao, Wei Wang, Lian Xu, Tao Yi, Xia Zhao, Yuquan Wei, Louis Vermeulen, Ajay Goel, Shengtao Zhou, Xin Wang
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41388-018-0546-z

Regulation of human glioma cell migration, tumor growth, and stemness gene expression using a Lck targeted inhibitor
Cited by: 48
Author(s): John P. Zepecki, Kristin M. Snyder, Margot-Martinez Moreno, Eduardo Fajardo, András Fiser, Jennifer K. Ness, Atom Sarkar, Steven Toms, Nikos Tapinos
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41388-018-0277-1

Inhibition of GPR158 by microRNA-449a suppresses neural lineage of glioma stem/progenitor cells and correlates with higher glioma grades
Cited by: 20
Author(s): Ningning Li, Ying Zhang, Kastytis Šidlauskas, Matthew Ellis, Ivor H. Evans, Paul Frankel, Joanne Lau, Tedani El-Hassan, Loredana Guglielmi, Jessica Broni, Angela Richard-Loendt, Sebastian Brandner
Software Mentions: 1
Published: over 8 years ago

10.1186/s12967-020-02367-z

High methylation of lysine acetyltransferase 6B is associated with the Cobb angle in patients with congenital scoliosis
Cited by: 9
Author(s): Yuantao Wu, Hongqi Zhang, Mingxing Tang, Chaofeng Guo, Ang Deng, Jiong Li, Yunjia Wang, Lairong Xiao, Guanteng Yang
Software Mentions: 1
Published: over 6 years ago

10.1093/infdis/jiy420

Impact of Zostavax Vaccination on T-Cell Accumulation and Cutaneous Gene Expression in the Skin of Older Humans After Varicella Zoster Virus Antigen–Specific Challenge
Cited by: 10
Author(s): Nayna Patel, Milica Vukmanovic‐Stejic, Mayte Suárez‐Fariñas, Emma S. Chambers, Daisy Sandhu, Judilyn Fuentes‐Duculan, Neil A. Mabbott, M.H.A. Rustin, James G. Krueger, Arne N. Akbar
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-72551-0

Identifying a nasal gene expression signature associated with hyperinflation and treatment response in severe COPD
Cited by: 2
Author(s): Alen Faiz, Kai Imkamp, Erica van der Wiel, Ilse M. Boudewijn, Gerard H. Koppelman, Corry‐Anke Brandsma, Huib A. M. Kerstjens, Wim Timens, Sebastiaan J. Vroegop, Henk Pasma, Wim Boersma, Pascal Wielders, Frank van den Elshout, Khaled Mansour, Katrina Steiling, Avrum Spira, Marc E. Lenburg, Irene H. Heijink, Dirkje S. Postma, Maarten van den Berge
Software Mentions: 1
Published: almost 6 years ago

10.1155/2015/952184

Electroporated Antigen-Encoding mRNA Is Not a Danger Signal to Human Mature Monocyte-Derived Dendritic Cells
Cited by: 6
Author(s): Stefanie Hoyer, Kerstin F. Gerer, Isabell A. Pfeiffer, Sabrina Prommersberger, Sandra Höfflin, Tanushree Jaitly, Luca Beltrame, Duccio Cavalieri, Gerold Schuler, Julio Vera, Niels Schaft, Jan Dörrie
Software Mentions: 1
Published: over 11 years ago

10.1155/2021/6661625

Identification of Immune-Related Prognostic Biomarkers Associated with HPV-Positive Head and Neck Squamous Cell Carcinoma
Cited by: 6
Author(s): Yifei Chen, Jin Nie, Xiangsheng Li, Tao Fan, Xiaowen Deng, Dan Liang, Gui‐Lin Song
Software Mentions: 1
Published: over 5 years ago

10.1155/2018/6451298

LCK as a Potential Therapeutic Target for Acute Rejection after Kidney Transplantation: A Bioinformatics Clue
Cited by: 6
Author(s): Linpei Jia, Rufu Jia, Yinping Li, Xiaoxia Li, Qiang Jia, Hong‐Liang Zhang
Software Mentions: 1
Published: over 8 years ago

10.1186/s12967-018-1577-5

Identification of an early diagnostic biomarker of lung adenocarcinoma based on co-expression similarity and construction of a diagnostic model
Cited by: 7
Author(s): Zhirui Fan, Wenhua Xue, Lifeng Li, Chaoqi Zhang, Jingli Lü, Yunkai Zhai, Zhenhe Suo, Jie Zhao
Software Mentions: 1
Published: about 8 years ago

10.1186/s40425-019-0641-x

Oncolytic Maraba virus armed with tumor antigen boosts vaccine priming and reveals diverse therapeutic response patterns when combined with checkpoint blockade in ovarian cancer
Cited by: 38
Author(s): AJ Robert McGray, Ruea-Yea Huang, Sebastiano Battaglia, Cheryl Eppolito, Anthony Miliotto, Kyle B. Stephenson, Amit A. Lugade, Gill Webster, Brian D. Lichty, Mukund Seshadri, Danuta Kozbor, Kunle Odunsi
Software Mentions: 1
Published: about 7 years ago

10.1002/jsp2.1146

Transcriptional profiling of intervertebral disc in a post‐traumatic early degeneration organ culture model
Cited by: 4
Author(s): Shangbin Cui, Zhiyu Zhou, Xu Chen, Fuxin Wei, R. Geoff Richards, Mauro Alini, Sibylle Grad, Zhen Li
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms221910819

Transcriptome Analyses Identify Potential Key microRNAs and Their Target Genes Contributing to Ovarian Reserve
Cited by: 1
Author(s): Yoon Young Kim, Kwang S. Kim, Yong Jin Kim, Sung Woo Kim, Hoon Kim, Seung‐Yup Ku
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-72955-y

Arabidopsis, tobacco, nightshade and elm take insect eggs as herbivore alarm and show similar transcriptomic alarm responses
Cited by: 14
Author(s): Tobias Lortzing, Reinhard Kunze, Anke Steppuhn, Monika Hilker, Tobias Lortzing
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13052-018-0575-9

Genomics of neonatal sepsis: has-miR-150 targeting BCL11B functions in disease progression
Cited by: 17
Author(s): Li Huang, Lixing Qiao, Huan Zhu, Li Jiang, Yin Li
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-71852-8

The synergistic interaction of thermal stress coupled with overstocking strongly modulates the transcriptomic activity and immune capacity of rainbow trout (Oncorhynchus mykiss)
Cited by: 16
Author(s): Alexander Rebl, Tomáš Korytář, Andreas Borchel, Ralf Bochert, Joanna Ewa Strzelczyk, Tom Goldammer, Marieke Verleih
Software Mentions: 1
Published: about 6 years ago

10.1111/jne.12339

Decreased <i>Npas4</i> and <i>Arc </i><scp>mRNA</scp> Levels in the Hippocampus of Aged Memory‐Impaired Wild‐Type But Not Memory Preserved 11β‐<scp>HSD</scp>1 Deficient Mice
Cited by: 20
Author(s): Jing Qiu, Donald R. Dunbar, June Noble, Carolynn Cairns, Rod Carter, Val Kelly, Karen Chapman, Jonathan R. Seckl, Joyce L.W. Yau
Software Mentions: 1
Published: over 10 years ago

Projects: bioconductor: limma

Science Score: 78/100

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Papers Mentioning limma 7,776