bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1172/JCI125170

Sonic Hedgehog signaling limits atopic dermatitis via Gli2-driven immune regulation
Cited by: 36
Author(s): Eleftheria Papaioannou, Diana C. Yánez, Scott R. Ross, Ching‐In Lau, Anisha Solanki, Mira Manilal Chawda, Alex Virasami, Ismael Ranz, M. Ono, R O'Shaughnessy, Tessa Crompton
Software Mentions: 1
Published: over 5 years ago

10.3390/toxins10050199

Saccharomyces cerevisiae Boulardii Reduces the Deoxynivalenol-Induced Alteration of the Intestinal Transcriptome
Cited by: 18
Author(s): Imourana Alassane-Kpémbi, Philippe Pinton, Jean-François Hupé, Manon Neves, Yannick Lippi, Sylvie Combes, Mathieu Castex, Isabelle P. Oswald
Software Mentions: 1
Published: over 6 years ago

10.3390/cells8101187

Proteomic and Transcriptomic Profiling Identifies Early Developmentally Regulated Proteins in Dictyostelium Discoideum
Cited by: 9
Author(s): Óscar González-Velasco, Javier De Las Rivas, Jesús Lacal
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.9086

Identification of key genes associated with progression and prognosis for lung squamous cell carcinoma
Cited by: 10
Author(s): Xu Ma, Hongyi Ren, Ruoyu Peng, Yi Li, Liang Ming
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins12100645

Bacillus cereus Decreases NHE and CLO Exotoxin Synthesis to Maintain Appropriate Proteome Dynamics During Growth at Low Temperature
Cited by: 6
Author(s): Catherine Duport, Ludivine Rousset, Béatrice Alpha-Bazin, Jean Armengaud
Software Mentions: 1
Published: about 4 years ago

10.1002/jcla.23393

Identification of plasma hsa_circ_0008673 expression as a potential biomarker and tumor regulator of breast cancer
Cited by: 26
Author(s): Youting Hu, Qi Song, Jinmin Zhao, Jian Ruan, Fan He, Xia Yang, Xindi Yu
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins12100621

Indoxyl Sulfate-Mediated Metabolic Alteration of Transcriptome Signatures in Monocytes of Patients with End-Stage Renal Disease (ESRD)
Cited by: 2
Author(s): Hee Young Kim, Su Jeong Lee, Yuri Hwang, Ga Hye Lee, Chae Eun Yoon, Hyeon Chang Kim, Tae Hyun Yoo, Won Woo Lee
Software Mentions: 1
Published: about 4 years ago

10.1002/jcla.23584

Microinjection manipulation decreases the expression of GABA‐A receptor signaling pathway genes in mouse embryos derived using intracytoplasmic sperm injection
Cited by: 0
Author(s): Zili Zhang, Ting Wang, Juanhua Huang, Yu‐Yao Huang, Qingxue Zhang
Software Mentions: 1
Published: about 4 years ago

10.1002/jcla.23588

Bioinformatics analysis of differentially expressed miRNAs in non‐small cell lung cancer
Cited by: 14
Author(s): Hui Yu, Zhonghao Pang, Gang Li, Tianyi Gu
Software Mentions: 1
Published: about 4 years ago

10.1002/jcla.23779

A ten N6‐methyladenosine‐related long non‐coding RNAs signature predicts prognosis of triple‐negative breast cancer
Cited by: 19
Author(s): Jie Wu, Yan Cai, Gaiping Zhao, Maolan Li
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2021.688970

CircITGA7 Suppresses Gastric Cancer Progression Through miR-1471/MTDH Axis
Cited by: 2
Author(s): Haifeng Jin, Zheng Wu, Bibo Tan, Zhen Liu, Binqian Zhang
Software Mentions: 1
Published: about 3 years ago

10.7717/peerj.10830

The methylation level of TFAP2A is a potential diagnostic biomarker for retinoblastoma: an analytical validation study
Cited by: 4
Author(s): Qi Zeng, Sha Wang, Jia Tan, Lu Chen, Jinwei Wang
Software Mentions: 1
Published: over 3 years ago

10.1186/s40035-020-00194-2

Paroxetine ameliorates prodromal emotional dysfunction and late-onset memory deficit in Alzheimer’s disease mice
Cited by: 11
Author(s): Penghui Ai, Si Chen, Xiandong Liu, Xiaona Zhu, Yuan‐Bo Pan, Donghan Feng, Shengdi Chen, Nan‐Jie Xu, Suya Sun
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.2839

Transcriptomic response of maize primary roots to low temperatures at seedling emergence
Cited by: 15
Author(s): Mauro Di Fenza, Bridget Hogg, Jim Grant, Susanne Barth
Software Mentions: 1
Published: almost 8 years ago

10.3390/jcm9051276

Gene Expression Patterns Distinguish Mortality Risk in Patients with Postsurgical Shock
Cited by: 7
Author(s): Pedro Martínez-Paz, Marta Aragón-Camino, Esther Gómez-Sánchez, Mario Lorenzo-López, Estefanía Gómez-Pesquera, Rocío López-Herrero, Belén Sánchez-Quirós, Olga de la Varga, Álvaro Tamayo-Velasco, Christian Ortega-Loubón, Emilio García‐Morán, Hugo Gonzalo, María Heredia-Rodríguez, Eduardo Tamayo
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.656554

lncRNA Profiles Enable Prognosis Prediction and Subtyping for Esophageal Squamous Cell Carcinoma
Cited by: 9
Author(s): Shujun Zhang, Juan Li, Hongtao Gao, Yao Tong, Peilong Li, Yunshan Wang, Du Li, Chuanxin Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2020.544248

Identification of Interleukin-9 Producing Immune Cells in Endometrial Carcinoma and Establishment of a Prognostic Nomogram
Cited by: 11
Author(s): Huan Tong, Hao Feng, Xiang Hu, Mengfei Wang, Yiran Song, Wen Xu, Yiran Li, Xiaoping Wan
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0089839

Association of Childhood Chronic Physical Aggression with a DNA Methylation Signature in Adult Human T Cells
Cited by: 74
Author(s): Nadine Provençal, Matthew Suderman, Claire Guillemin, Frank Vitaro, Sylvana M. Côté, Michael Hallett, Richard E. Tremblay, Moshe Szyf
Software Mentions: 1
Published: over 10 years ago

10.1186/s13018-019-1538-6

Knockdown of miR-660 protects nucleus pulposus cells from TNF-a-induced apoptosis by targeting serum amyloid A1
Cited by: 10
Author(s): Hao Jie Zhang, Xue Hai, Song Lin Xie, Shu Qin, Cong Zhi Liu, Zhen Guo Zhang
Software Mentions: 1
Published: almost 5 years ago

10.3389/pore.2021.609620

Wnt3a/β-Catenin/CBP Activation in the Progression of Cervical Intraepithelial Neoplasia
Cited by: 1
Author(s): Dingqing Feng, Jie Lin, Wenhui Wang, Keqin Yan, Huaping Liang, Jing Liang, Huan Yu, Bin Ling
Software Mentions: 1
Published: over 3 years ago

10.3389/pore.2021.596899

Identification of DNA-Repair-Related Five-Gene Signature to Predict Prognosis in Patients with Esophageal Cancer
Cited by: 7
Author(s): Lin Wang, Xueping Li, Liang Zhao, Longyang Jiang, Xinyue Song, Aoshuang Qi, Ting Chen, Mingyi Ju, Baohui Hu, Minjie Wei, Miao He, Lin Zhao
Software Mentions: 1
Published: over 3 years ago

10.1038/tp.2016.131

MicroRNAs as biomarkers for major depression: a role for let-7b and let-7c
Cited by: 94
Author(s): Anand Gururajan, Marie Naughton, Karen A. Scott, Richard M. O’Connor, Gerard M. Moloney, Gerard Clarke, Joshua L. Dowling, Annabel Walsh, Muhammad Ismail, George Shorten, Lucinda V. Scott, Declan M. McLoughlin, John F. Cryan, Timothy G. Dinan
Software Mentions: 1
Published: over 8 years ago

10.3389/pore.2021.581542

Tumor Inhibitory Effect of Long Non-coding RNA LOC100505817 on Gastric Cancer
Cited by: 1
Author(s): Lei Zheng, Liying Kang, Yan Cheng, Jun-Li Cao, Lijie Liu, Hongmei Xu, Lian Gao
Software Mentions: 1
Published: over 3 years ago

10.1038/tp.2016.78

Differential expression of transcriptional regulatory units in the prefrontal cortex of patients with bipolar disorder: potential role of early growth response gene 3
Cited by: 27
Author(s): Bianca Pfaffenseller, Pedro Vieira da Silva Magalhães, Marco Antônio De Bastiani, Mauro A. A. Castro, Amelia L. Gallitano, Flávio Kapczinski, Fábio Klamt
Software Mentions: 1
Published: over 8 years ago

10.1155/2013/589451

The Effect of Diabetes-Associated Autoantigens on Cell Processes in Human PBMCs and Their Relevance to Autoimmune Diabetes Development
Cited by: 4
Author(s): Jana Včeláková, Radek Blatný, Z. Halbhuber, Michal Kolář, Aleš Neuwirth, Lenka Petruželková, Tereza Ulmannová, Stanislava Koloušková, Zdenĕk Šumnı́k, Pavlína Piťhová, M Krivjanska, Dominik Filipp, Kateřina Štechová
Software Mentions: 1
Published: almost 12 years ago

10.1155/2014/763936

Targets and Candidate Agents for Type 2 Diabetes Treatment with Computational Bioinformatics Approach
Cited by: 10
Author(s): Qiong Wang, Zhigang Zhao, Jing Shang, Wei Xia
Software Mentions: 1
Published: almost 11 years ago

10.1155/2018/7361684

A Transcriptional Sequencing Analysis of Islet Stellate Cell and Pancreatic Stellate Cell
Cited by: 10
Author(s): Xiaohang Wang, Wei Li, Juan Chen, Sheng Zhao, Shanhu Qiu, Han Yin, Vladmir Carvalho, Yunting Zhou, Ruifeng Shi, Jiannan Hu, Shenyi Li, Munire Nijiati, Zilin Sun
Software Mentions: 1
Published: almost 7 years ago

10.1042/BSR20181783

Integrated analyses of lncRNAs microarray profiles and mRNA–lncRNA coexpression in smooth muscle cells under hypoxic and normoxic conditions
Cited by: 6
Author(s): Qinshuo Zhao, Dating Sun, Yuanyuan Li, Jin Qin, Jiangtao Yan
Software Mentions: 1
Published: over 5 years ago

10.3390/pathogens9010069

Staphylococcus saprophyticus Proteomic Analyses Elucidate Differences in the Protein Repertories among Clinical Strains Related to Virulence and Persistence
Cited by: 6
Author(s): Karla Christina Sousa Silva, Lana O’Hara Souza Silva, Guilherme Algusto Alves Silva, Clayton Luiz Borges, Evandro Novaes, Juliano D. Paccez, Wagner Fontes, Márcia Giambiagi-deMarval, Célia Maria de Almeida Soares, Juliana Alves Parente-Rocha
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12989-016-0160-6

Copper oxide nanoparticle toxicity profiling using untargeted metabolomics
Cited by: 54
Author(s): Matthew Boyles, Christina Ranninger, Roland Reischl, Marc Rurik, Richard Tessadri, Oliver Kohlbacher, Albert Duschl, Christian G. Huber
Software Mentions: 1
Published: almost 9 years ago

10.1093/jxb/eru145

Heterografting with nonself rootstocks induces genes involved in stress responses at the graft interface when compared with autografted controls
Cited by: 85
Author(s): Sarah Jane Cookson, María José Clemente‐Moreno, Cyril Hévin, Larissa Zita Nyamba Mendome, Serge Delrot, Noël Magnin, Claudine Trossat-Magnin, Nathalie Ollat
Software Mentions: 1
Published: over 10 years ago

10.1042/BSR20200980

Identification of prognosis-related genes in the tumor microenvironment of stomach adenocarcinoma by TCGA and GEO datasets
Cited by: 22
Author(s): Na Ren, Bin Liang, Yunhui Li
Software Mentions: 1
Published: about 4 years ago

10.3390/cells9040828

Cholesterol Homeostasis Modulates Platinum Sensitivity in Human Ovarian Cancer
Cited by: 36
Author(s): Daniela Criscuolo, Rosario Avolio, Giovanni Calice, Chiara Laezza, Simona Paladino, Giovanna Navarra, Francesca Maddalena, Fabiana Crispo, Cristina Pagano, Maurizio Bifulco, Matteo Landriscina, Danilo Swann Matassa, Franca Esposito
Software Mentions: 1
Published: over 4 years ago

10.1186/s13018-017-0674-0

A time-course microarray data analysis reveals consistent dysregulated genes and upstream microRNAs in autoantibody-mediated arthritis
Cited by: 1
Author(s): Xinwen Wang, Jie Bai, Zhen Jia, Yangjun Zhu, Jijun Liu, Kun Zhang, Dingjun Hao, Heng Li
Software Mentions: 1
Published: almost 7 years ago

10.1093/jxb/erw295

Spatial and temporal transcriptome changes occurring during flower opening and senescence of the ephemeral hibiscus flower,<i>Hibiscus rosa-sinensis</i>
Cited by: 30
Author(s): Alice Trivellini, Giacomo Cocetta, Donald A. Hunter, Paolo Vernieri, António Ferrante
Software Mentions: 1
Published: about 8 years ago

10.3390/cells10061326

The C0-C1f Region of Cardiac Myosin Binding Protein-C Induces Pro-Inflammatory Responses in Fibroblasts via TLR4 Signaling
Cited by: 5
Author(s): Athiththan Yogeswaran, Christian Troidl, James W. McNamara, Jochen Wilhelm, Theresa Truschel, Laila Widmann, Muhammad Aslam, Christian W. Hamm, Sakthivel Sadayappan, Christoph Lipps
Software Mentions: 1
Published: over 3 years ago

10.1093/jxb/erx104

Complexity and specificity of the maize (Zea mays L.) root hair transcriptome
Cited by: 18
Author(s): Stefan Hey, Jutta A. Baldauf, Nina Opitz, Andrew Lithio, Asher Pasha, Nicholas J. Provart, Dan Nettleton, Frank Hochholdinger
Software Mentions: 1
Published: over 7 years ago

10.1186/s13018-021-02390-w

Identification of key genes and pathways of BMP-9-induced osteogenic differentiation of mesenchymal stem cells by integrated bioinformatics analysis
Cited by: 12
Author(s): Jiaqi Wu, Lin-Bo Mao, Lingfeng Liu, Yongmei Li, Jian Wu, Jiao Yao, Fenghuan Zhang, Tingyu Liu, Ling Yuan
Software Mentions: 1
Published: over 3 years ago

10.1042/BSR20192724

Profiles of immune cell infiltration in head and neck squamous carcinoma
Cited by: 18
Author(s): Bin Liang, Tao Ye, Tianjiao Wang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0173822

In silico search for modifier genes associated with pancreatic and liver disease in Cystic Fibrosis
Cited by: 14
Author(s): Pascal Trouvé, Emmanuelle Génin, Claude Férec
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.21929

Proteome profiling of clear cell renal cell carcinoma in von Hippel-Lindau patients highlights upregulation of Xaa-Pro aminopeptidase-1, an anti-proliferative and anti-migratory exoprotease
Cited by: 13
Author(s): Vanessa Drendel, Bianca Heckelmann, Chia-Yi Chen, Juliane Weißer, Guadalupe Espadas, Christoph Schell, Eduard Sabidò, Martin Werner, Cordula A. Jilg, Oliver Schilling
Software Mentions: 1
Published: about 7 years ago

10.1042/BSR20180775

Analysis of anti-osteoporosis function of chlorogenic acid by gene microarray profiling in ovariectomy rat model
Cited by: 21
Author(s): Min Jun, Zhen Yuan, Qiao Zhang, Sijian Lin, Kai Wang, Jun Luo
Software Mentions: 1
Published: about 6 years ago

10.1155/2018/1590465

Microarray Analysis of the Molecular Mechanism Involved in Parkinson’s Disease
Cited by: 13
Author(s): Cheng Tan, Xiaoyang Liu, Jiajun Chen
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13018-021-02464-9

Bioinformatics analysis and identification of genes and molecular pathways in steroid-induced osteonecrosis of the femoral head
Cited by: 8
Author(s): Tianye Lin, Weijian Chen, Peng Yang, Ziqi Li, Qiushi Wei, Liqing Du, Haibin Wang, Wei He, Qingwen Zhang
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.622001

Repurposing of the Antiepileptic Drug Levetiracetam to Restrain Neuroendocrine Prostate Cancer and Inhibit Mast Cell Support to Adenocarcinoma
Cited by: 6
Author(s): Roberta Sulsenti, Barbara Frossi, Lucia Bongiovanni, Valeria Cancila, Paola Ostano, Irene Fischetti, Claudia Enriquez, Francesca Guana, Giovanna Chiorino, Claudio Tripodo, Carlo Pucillo, Mario P. Colombo, Elena Jachetti
Software Mentions: 1
Published: over 3 years ago

10.1093/jxb/eraa130

Seasonal nitrogen remobilization and the role of auxin transport in poplar trees
Cited by: 10
Author(s): Gen Li, Rongshoung Lin, Chioma Egekwu, Joshua J. Blakeslee, Ji Lin, Emily A. Pettengill, Angus S. Murphy, Wendy Ann Peer, Nazrul Islam, Benjamin A. Babst, Fei Gao, Sergey Komarov, Yuan Chuan Tai, Gary D. Coleman
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.21132

Characterization of epithelial-mesenchymal transition intermediate/hybrid phenotypes associated to resistance to EGFR inhibitors in non-small cell lung cancer cell lines
Cited by: 41
Author(s): Valentina Fustaino, Dario Presutti, Teresa Colombo, Beatrice Cardinali, Giuliana Papoff, Rossella Brandi, Paola Bertolazzi, G. Felici, Giovina Ruberti
Software Mentions: 1
Published: about 7 years ago

10.1093/jxb/erab306

ABA signalling promotes cell totipotency in the shoot apex of germinating embryos
Cited by: 14
Author(s): Baojian Chen, Martijn Fiers, Bas J.W. Dekkers, Lena Maas, G. Wilma van Esse, Gerco C. Angenent, Yanping Zhao, Kim Boutilier
Software Mentions: 1
Published: over 3 years ago

10.3390/cells9102329

Complexity of Brassica oleracea–Alternaria brassicicola Susceptible Interaction Reveals Downregulation of Photosynthesis at Ultrastructural, Transcriptional, and Physiological Levels
Cited by: 16
Author(s): Violetta Katarzyna Macioszek, Magdalena Gapińska, Agnieszka Żmieńko, Mirosław Sobczak, Andrzej Skoczowski, Jakub Oliwa, Andrzej K. Kononowicz
Software Mentions: 1
Published: about 4 years ago

10.3390/cells10020325

Genetic Perturbation of Pyruvate Dehydrogenase Kinase 1 Modulates Growth, Angiogenesis and Metabolic Pathways in Ovarian Cancer Xenografts
Cited by: 8
Author(s): Carolina Venturoli, Ilaria Piga, Matteo Curtarello, Martina Verza, Giovanni Esposito, Santina Venuto, Filippo Navaglia, Angela Grassi, Stefano Indraccolo
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.ppat.1000616

KSHV Manipulates Notch Signaling by DLL4 and JAG1 to Alter Cell Cycle Genes in Lymphatic Endothelia
Cited by: 61
Author(s): Victoria Emuss, Dimitrios Lagos, Arnold Pizzey, Fiona Gratrix, Stephen Henderson, Chris Boshoff
Software Mentions: 1
Published: about 15 years ago

10.1042/BSR20201713

Identification of biomarkers associated with synovitis in rheumatoid arthritis by bioinformatics analyses
Cited by: 5
Author(s): Zhaoyan Li, Meng Xu, Ronghang Li, Zhe Zhu, Yuzhe Liu, Zhenwu Du, Guizhen Zhang, Yang Song
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.ppat.1001013

Epigenetic Analysis of KSHV Latent and Lytic Genomes
Cited by: 219
Author(s): Zsolt Tóth, Dennis T. Maglinte, Sun Hwa Lee, Hye‐Ra Lee, Li Chin Wong, Kevin Brulois, Stacy Lee, Jonathan D. Buckley, Peter W. Laird, Víctor E. Márquez, Jae U. Jung
Software Mentions: 1
Published: over 14 years ago

10.7554/eLife.69578

Innate immune activation by checkpoint inhibition in human patient-derived lung cancer tissues
Cited by: 15
Author(s): Teresa W.‐M. Fan, Richard M. Higashi, Hai Song, Saeed Daneshmandi, Angela Mahan, Matthew S. Purdom, Thérèse Bocklage, Thomas Pittman, Daheng He, Chi Wang, Andrew N. Lane
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.ppat.1002405

Kaposi's Sarcoma Herpesvirus microRNAs Target Caspase 3 and Regulate Apoptosis
Cited by: 108
Author(s): Guillaume Suffert, Georg Malterer, Jean Hausser, Johanna Viiliäinen, Aurélie Fender, Maud Contrant, Tomi Ivacevic, Vladimír Beneš, Frédéric Gros, Olivier Voinnet, Mihaela Zavolan, Päivi M. Ojala, Juergen Haas, Sébastien Pfeffer
Software Mentions: 1
Published: almost 13 years ago

10.7554/eLife.12102

Structural and kinetic analysis of the COP9-Signalosome activation and the cullin-RING ubiquitin ligase deneddylation cycle
Cited by: 72
Author(s): Ruzbeh Mosadeghi, Kurt M. Reichermeier, Martin Winkler, Anne Schreiber, Justin M. Reitsma, Yaru Zhang, Florian Stengel, Junyue Cao, Minsoo Kim, Michael J. Sweredoski, Sonja Hess, Alexander Leitner, Ruedi Aebersold, Matthias Peter, Raymond J. Deshaies, Radoslav I. Enchev
Software Mentions: 1
Published: over 8 years ago

10.1186/s12916-016-0710-7

Spatial transcriptome analysis reveals Notch pathway-associated prognostic markers in IDH1 wild-type glioblastoma involving the subventricular zone
Cited by: 31
Author(s): Christine Jungk, Andreas Möck, Janina Exner, Christoph Geisenberger, Rolf Warta, David Capper, Amir Abdollahi, Sara Friauf, Bernd Lahrmann, Niels Grabe, Philipp Beckhove, Andreas von Deimling, Andreas Unterberg, Christel Herold‐Mende
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.ppat.1002840

CD160 and PD-1 Co-Expression on HIV-Specific CD8 T Cells Defines a Subset with Advanced Dysfunction
Cited by: 129
Author(s): Yoav Peretz, Zuoli He, Yulu Shi, Bader Yassine‐Diab, Jean-Philippe Goulet, Rebeka Bordi, Ali Filali‐Mouhim, Jean-Baptiste Loubert, Mohamed El-Far, Franck P. Dupuy, Mohamed-Rachid Boulassel, Cécile Tremblay, Jean‐Pierre Routy, Nicole F. Bernard, Robert Balderas, Elias K. Haddad, Rafick‐Pierre Sékaly
Software Mentions: 1
Published: over 12 years ago

10.1186/s13071-019-3672-8

Differential gene expression, including Sjfs800, in Schistosoma japonicum females at pre-pairing, initial pairing and oviposition
Cited by: 5
Author(s): Fengchun Liu, Han‐Fei Ding, Jiaming Tian, Congyu Zhou, Fei Yang, Wei Shao, Yinan Du, Xin Hou, Chao Ren, Jijia Shen
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1003118

IRF-3, IRF-5, and IRF-7 Coordinately Regulate the Type I IFN Response in Myeloid Dendritic Cells Downstream of MAVS Signaling
Cited by: 247
Author(s): Helen M. Lazear, Alissa M. Lancaster, Courtney Wilkins, Mehul S. Suthar, Albert C. Huang, Sarah C. Vick, Lisa Clepper, Larissa B. Thackray, Margaret M. Brassil, Herbert W. Virgin, Janko Nikolich‐Žugich, Ashlee V. Moses, Michael Gale, Klaus Früh, Michael S. Diamond
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.ppat.1003098

Teleost fish mount complex clonal IgM and IgT responses in spleen upon systemic viral infection.
Cited by: 1
Author(s): Rosario Castro, Luc Jouneau, Hang-Phuong Pham, Olivier Bouchez, Véronique Giudicelli, Marie‐Paule Lefranc, Edwige Quillet, Abdenour Benmansour, Frédéric Cazals, Adrien Six, Simon Fillatreau, Oriol Sunyer, Pierre Boudinot
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.ppat.1003416

Genome-wide RNAi Screen Reveals a New Role of a WNT/CTNNB1 Signaling Pathway as Negative Regulator of Virus-induced Innate Immune Responses
Cited by: 56
Author(s): Martin Baril, Salwa Es-Saad, Laurent Chatel‐Chaix, Karin Fink, Tram N. Q. Pham, Valérie–Ann Raymond, Karine Audette, Anne-Sophie Guenier, Jean Duchaine, Marc J. Servant, Marc Bilodeau, Éric A. Cohen, Nathalie Grandvaux, Daniel Lamarre
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1003441

Multifunctional Double-negative T Cells in Sooty Mangabeys Mediate T-helper Functions Irrespective of SIV Infection
Cited by: 29
Author(s): Vasudha Sundaravaradan, Ramsey A. Saleem, Luca Micci, Melanie A. Gasper, Alexandra M. Ortiz, James G. Else, Guido Silvestri, Mirko Paiardini, John D. Aitchison, Donald L. Sodora
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1003799

Myeloid Dendritic Cells Induce HIV-1 Latency in Non-proliferating CD4+ T Cells
Cited by: 58
Author(s): Vanessa A. Evans, Nitasha Kumar, Ali Filali, Francesco A. Procopio, Oleg Yegorov, Jean-Philippe Goulet, Suha Saleh, Elias K. Haddad, Candida da Fonseca Pereira, Paula Ellenberg, Rafick‐Pierre Sékaly, Paul Cameron, Sharon R. Lewin
Software Mentions: 1
Published: almost 11 years ago

10.1042/BSR20193823

Identification of novel biomarkers and candidate small molecule drugs in rheumatoid arthritis and osteoarthritis based on bioinformatics analysis of high-throughput data
Cited by: 9
Author(s): Bin Zuo, Junfeng Zhu, Fei Xiao, Chenglong Wang, Yun Shen, Xiao Chen
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.51620

An atypical DYRK kinase connects quorum-sensing with posttranscriptional gene regulation in Trypanosoma brucei
Cited by: 28
Author(s): Mathieu Cayla, Lindsay McDonald, Paula MacGregor, Keith R. Matthews
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.ppat.1004419

Leishmania donovani Infection Causes Distinct Epigenetic DNA Methylation Changes in Host Macrophages
Cited by: 109
Author(s): Alexandra K. Marr, Julia L. MacIsaac, Ruiwei Jiang, Adriana M. Airo, Michæl S. Kobor, W. Robert McMaster
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.ppat.1004542

Targeted Changes of the Cell Wall Proteome Influence Candida albicans Ability to Form Single- and Multi-strain Biofilms
Cited by: 52
Author(s): Vitor Cabral, Sadri Znaidi, Larry P. Walker, Hélène Martin-Yken, Étienne Dague, Mélanie Legrand, Keunsook Lee, Murielle Chauvel, Arnaud Firon, Tristan Rossignol, Mathias L. Richard, Carol A. Munro, Sophie Bachellier‐Bassi, Christophe d’Enfert
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.1004630

Cell Cycle-Independent Phospho-Regulation of Fkh2 during Hyphal Growth Regulates Candida albicans Pathogenesis
Cited by: 25
Author(s): Jamie A. Greig, Ian Sudbery, Jonathan P. Richardson, Julian R. Naglik, Yan Ming Wang, Peter E. Sudbery
Software Mentions: 1
Published: almost 10 years ago

10.1042/BSR20201946

Circular RNA expression profiles in umbilical cord blood exosomes from normal and gestational diabetes mellitus patients
Cited by: 24
Author(s): Mingtao Cao, Le Zhang, Yongcheng Lin, Zhengying Li, Jianjuan Xu, Zhonghua Shi, Zhong Chen, Jinqi Ma, Juan Wen
Software Mentions: 1
Published: about 4 years ago

10.1186/s13071-015-0844-z

Profiling of differentially expressed genes in sheep T lymphocytes response to an artificial primary Haemonchus contortus infection
Cited by: 9
Author(s): Yi Yang, Qianjin Zhou, Xue-Qiu Chen, Bowen Yan, Xing Guo, Hongli Zhang, Aifang Du
Software Mentions: 1
Published: over 9 years ago

10.1186/s13071-018-2822-8

The mosquito adulticidal Chromobacterium sp. Panama causes transgenerational impacts on fitness parameters and elicits xenobiotic gene responses
Cited by: 9
Author(s): Sarah M. Short, Sarah van Tol, Barry D. Smith, Yuemei Dong, George Dimopoulos
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9061333

Heterogeneity of Metabolic Vulnerability in Imatinib-Resistant Gastrointestinal Stromal Tumor
Cited by: 11
Author(s): Wen‐Shih Huang, Jianlu Gao, Ziqing Chen, Hao Shi, Jing Yuan, Huanhuan Cui, Chun‐Nan Yeh, Robert Bränström, Catharina Larsson, Shuijie Li, Weng‐Onn Lui
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.ppat.1005772

Spliceosome SNRNP200 Promotes Viral RNA Sensing and IRF3 Activation of Antiviral Response
Cited by: 22
Author(s): Nicolas Tremblay, Martin Baril, Laurent Chatel‐Chaix, Salwa Es-Saad, Alex Young Park, Robert K. Koenekoop, Daniel Lamarre
Software Mentions: 1
Published: over 8 years ago

10.1186/1755-8794-7-13

Childhood abuse is associated with methylation of multiple loci in adult DNA
Cited by: 147
Author(s): Matthew Suderman, Nada Borghol, Jane J. Pappas, Snehal M Pinto Pereira, Marcus Pembrey, Clyde Hertzman, Chris Power, Moshe Szyf
Software Mentions: 1
Published: over 10 years ago

Projects: bioconductor: limma

Papers Mentioning limma 7,776