bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1186/1471-2164-13-173

Genome-wide expression profiling shows transcriptional reprogramming in Fusarium graminearum by Fusarium graminearum virus 1-DK21 infection
Cited by: 33
Author(s): Won Kyong Cho, Jisuk Yu, Kyung-Mi Lee, Moonil Son, Kyung-Hee Min, Yin-Won Lee, Kook‐Hyung Kim
Software Mentions: 1
Published: over 14 years ago

10.1128/EC.00335-13

High-Throughput Chemical Screening for Antivirulence Developmental Phenotypes in Trypanosoma brucei
Cited by: 9
Author(s): Paula MacGregor, Alasdair Ivens, Steven Shave, Iain T. Collie, David W. Gray, Manfred Auer, Keith R. Matthews
Software Mentions: 1
Published: over 12 years ago

10.1111/cns.13109

Long noncoding RNA expression profile from cryptococcal meningitis patients identifies DPY19L1p1 as a new disease marker
Cited by: 7
Author(s): Lei Zhang, Wenjie Fang, Ke-Ming Zhang, Weiwei Jiang, Min Chen, Wanqing Liao, Weihua Pan
Software Mentions: 1
Published: over 7 years ago

10.1186/s12935-020-01302-y

Serum-derived three-circRNA signature as a diagnostic biomarker for hepatocellular carcinoma
Cited by: 44
Author(s): Xianghong Sun, Yu-Tong Wang, Guofu Li, Nan Zhang, Ling Fan
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0001398

Molecular Characterization of Spontaneous Mesenchymal Stem Cell Transformation
Cited by: 148
Author(s): Daniel Rubio, Sílvia García, Maria F. Paz, Teresa de la Cueva, Luis A. López-Fernández, Alison C. Lloyd, Javier García‐Castro, António Bernad
Software Mentions: 1
Published: almost 19 years ago

10.1111/cns.13197

Combined elevation of TRIB2 and MAP3K1 indicates poor prognosis and chemoresistance to temozolomide in glioblastoma
Cited by: 28
Author(s): Jia Wang, Jie Zuo, Alafate Wahafu, Maode Wang, Rui-Chun Li, Wei Xie
Software Mentions: 1
Published: about 7 years ago

10.1186/s12935-020-01651-8

Hsa_circ_0004831 serves as a blood-based prognostic biomarker for colorectal cancer and its potentially circRNA-miRNA-mRNA regulatory network construction
Cited by: 13
Author(s): Linlin Xing, Mengyan Xia, Xin Jiao, Ling Fan
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-72551-0

Identifying a nasal gene expression signature associated with hyperinflation and treatment response in severe COPD
Cited by: 2
Author(s): Alen Faiz, Kai Imkamp, Erica van der Wiel, Ilse M. Boudewijn, Gerard H. Koppelman, Corry‐Anke Brandsma, Huib A. M. Kerstjens, Wim Timens, Sebastiaan J. Vroegop, Henk Pasma, Wim Boersma, Pascal Wielders, Frank van den Elshout, Khaled Mansour, Katrina Steiling, Avrum Spira, Marc E. Lenburg, Irene H. Heijink, Dirkje S. Postma, Maarten van den Berge
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0017840

Adjunctive Dexamethasone Affects the Expression of Genes Related to Inflammation, Neurogenesis and Apoptosis in Infant Rat Pneumococcal Meningitis
Cited by: 22
Author(s): C. Blaser, Matthias Wittwer, Denis Grandgirard, Stephen L. Leib
Software Mentions: 1
Published: over 15 years ago

10.1016/j.cjco.2020.11.019

A Comparative Analysis of the Lipoprotein(a) and Low-Density Lipoprotein Proteomic Profiles Combining Mass Spectrometry and Mendelian Randomization
Cited by: 10
Author(s): Raphaëlle Bourgeois, Arnaud Girard, Nicolas Perrot, Jakie Guertin, Patricia L. Mitchell, Christian Couture, Clarisse Gotti, Sylvie Bourassa, Paolo Poggio, Elvira Mass, Romain Capoulade, Corey A. Scipione, Audrey-Anne Després, Patrick Couture, Arnaud Droit, Philippe Pîbarot, Michael B. Boffa, Sébastien Thériault, Marlys L. Koschinsky, Patrick Mathieu, Benoît J. Arsenault
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-021-01821-2

Identification the ferroptosis-related gene signature in patients with esophageal adenocarcinoma
Cited by: 58
Author(s): Lei Zhu, Fugui Yang, Lingwei Wang, Dong Lin, Zhiyuan Huang, Guangxue Wang, Guohan Chen
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21217812

Circular RNAs and Their Linear Transcripts as Diagnostic and Prognostic Tissue Biomarkers in Prostate Cancer after Prostatectomy in Combination with Clinicopathological Factors
Cited by: 6
Author(s): Hannah Rochow, Monika Jung, Sabine Weickmann, Bernhard Ralla, Carsten Stephan, Sefer Elezkurtaj, Ergin Kilic, Zhao Zhi, Klaus Jung, Annika Fendler, Antonia Franz
Software Mentions: 1
Published: almost 6 years ago

10.1007/s10549-018-4920-x

Co-expressed genes enhance precision of receptor status identification in breast cancer patients
Cited by: 7
Author(s): Michael Kenn, Dan Cacsire Castillo‐Tong, Christian F. Singer, Michael Cibena, H. Kölbl, Wolfgang Schreiner
Software Mentions: 1
Published: about 8 years ago

10.1155/2020/3280530

MicroRNA-587 Functions as a Tumor Suppressor in Hepatocellular Carcinoma by Targeting Ribosomal Protein SA
Cited by: 8
Author(s): Miao Chen, Duo Wang, Junjie Liu, Ziyan Zhou, Zhanling Ding, Lianfeng Liu, Danke Su, Hang Li
Software Mentions: 1
Published: about 6 years ago

10.1155/2019/3629751

Integration of Gene Expression Profile Data to Verify Hub Genes of Patients with Stanford A Aortic Dissection
Cited by: 9
Author(s): Weitie Wang, Tiance Wang, Yong Wang, Hulin Piao, Bo Li, Zhicheng Zhu, Rihao Xu, Dan Li, Kexiang Liu
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2020.571524

Identification of Key Gene Signatures Associated With Bone Metastasis in Castration-Resistant Prostate Cancer Using Co-Expression Analysis
Cited by: 5
Author(s): Zhongxiang Yu, Hanlin Zou, Huihao Wang, Qi Li, Dong Yu
Software Mentions: 1
Published: over 5 years ago

10.1186/s13072-019-0283-8

Aberrant methylation-mediated downregulation of lncRNA SSTR5-AS1 promotes progression and metastasis of laryngeal squamous cell carcinoma
Cited by: 30
Author(s): Baoshan Wang, Lei Zhao, Weiwei Chi, Huấn Cao, Weina Cui, Wenxia Meng
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0012882

Gene Expression Profiles of Colonic Mucosa in Healthy Young Adult and Senior Dogs
Cited by: 7
Author(s): Dong Yong Kil, Brittany M. Vester Boler, Carolyn J. Apanavicius, Lawrence B. Schook, Kelly S. Swanson
Software Mentions: 1
Published: about 16 years ago

10.1155/2016/7281732

Identification and Evolutionary Analysis of Potential Candidate Genes in a Human Eating Disorder
Cited by: 6
Author(s): Ubadah Sabbagh, Saman Mullegama, Gerald J. Wyckoff
Software Mentions: 1
Published: almost 11 years ago

10.3389/fonc.2020.01031

Identification of Aberrantly Methylated Differentially CpG Sites in Hepatocellular Carcinoma and Their Association With Patient Survival
Cited by: 2
Author(s): Renguo Guan, Weimin Guo, Wang Hong, Ye Lin, Xiongfeng Zou, Ning Shi, Dongyang Yang, Yu Zhou, Zhixiang Jian, Haosheng Jin, Weidong Lin, Min Yu
Software Mentions: 1
Published: about 6 years ago

10.3389/fonc.2020.585452

Mechanism and Molecular Network of RBM8A-Mediated Regulation of Oxaliplatin Resistance in Hepatocellular Carcinoma
Cited by: 9
Author(s): Rong Liang, Jinyan Zhang, Zhihui Liu, Ziyu Liu, Qian Li, Xi Luo, Yongqiang Li, Jiazhou Ye, Yan Lin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0061580

Transcriptional and Metabolic Changes Associated to the Infection by Fusarium verticillioides in Maize Inbreds with Contrasting Ear Rot Resistance
Cited by: 49
Author(s): Valeria A. Campos-Bermudez, Carolina M. Fauguel, Marcos A. Tronconi, Paula Casati, Daniel A. Presello, Carlos S. Andreo
Software Mentions: 1
Published: over 13 years ago

10.3390/ijms21228479

Establishment of a Gene Signature to Predict Prognosis for Patients with Lung Adenocarcinoma
Cited by: 17
Author(s): Zhaodong Li, Fanghua Qi, Fan Li
Software Mentions: 1
Published: almost 6 years ago

10.1080/15592294.2017.1367475

Variability of genome-wide DNA methylation and mRNA expression profiles in reproductive and endocrine disease related tissues
Cited by: 32
Author(s): Nilüfer Rahmioğlu, Alexander W. Drong, Helen Lockstone, Thomas T. Tapmeier, Karin Hellner, Merli Saare, Triin Laisk-Podar, Christine Dew, Emily Tough, George Nicholson, Maire Peters, Andrew P. Morris, Cecilia M. Lindgren, Christian M. Becker, Krina T. Zondervan
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0029457

Convergent Differential Regulation of Parvalbumin in the Brains of Vocal Learners
Cited by: 42
Author(s): Erina Hara, Miriam V. Rivas, James M. Ward, Kazuo Okanoya, Erich D. Jarvis
Software Mentions: 1
Published: almost 15 years ago

10.1038/s41598-021-89789-x

Discovery of primary prostate cancer biomarkers using cross cancer learning
Cited by: 12
Author(s): Kaiyue Zhou, Suzan Arslanturk, Douglas B. Craig, Elisabeth I. Heath, Sorin Drăghici
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0133607

Transcriptional Response of Human Neurospheres to Helper-Dependent CAV-2 Vectors Involves the Modulation of DNA Damage Response, Microtubule and Centromere Gene Groups
Cited by: 9
Author(s): Stefania Piersanti, Romina Burla, Valerio Licursi, Catarina Brito, Mattia La Torre, Paula M. Alves, Daniel Simão, Carla Mottini, Sara Salinas, Rodolfo Negri, Enrico Tagliafico, Eric J. Kremer, Isabella Saggio
Software Mentions: 1
Published: about 11 years ago

10.1016/j.omtn.2020.08.020

GC-Derived EVs Enriched with MicroRNA-675-3p Contribute to the MAPK/PD-L1-Mediated Tumor Immune Escape by Targeting CXXC4
Cited by: 23
Author(s): Ping Li, Xingdong Luo, Yue Xie, Pengfei Li, Fangyong Hu, Junfeng Chu, Xiaojun Chen, Wenbo Song, Ali Wang, Xiang Gu
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21228759

Phylostratic Shift of Whole-Genome Duplications in Normal Mammalian Tissues towards Unicellularity Is Driven by Developmental Bivalent Genes and Reveals a Link to Cancer
Cited by: 27
Author(s): Olga V. Anatskaya, Alexander E. Vinogradov, Ninel M. Vainshelbaum, Alessandro Giuliani, Jekaterina Ērenpreisa
Software Mentions: 1
Published: almost 6 years ago

10.1177/1073274819831260

Identification of Potential Key Genes and Pathways in Early-Onset Colorectal Cancer Through Bioinformatics Analysis
Cited by: 39
Author(s): Bin Zhao, Zulqarnain Baloch, Yunhan Ma, Weiping Zheng, Yani Huo, Fujun Li, Yilin Zhao
Software Mentions: 1
Published: almost 8 years ago

10.1080/15592294.2020.1788325

Epigenome-wide cross-tissue correlation of human bone and blood DNA methylation – can blood be used as a surrogate for bone?
Cited by: 17
Author(s): Parvaneh Ebrahimi, Holger Luthman, Fiona McGuigan, Kristina Åkesson
Software Mentions: 1
Published: about 6 years ago

10.1155/2020/5307641

SRCIN1 Regulated by circCCDC66/miR-211 Is Upregulated and Promotes Cell Proliferation in Non-Small-Cell Lung Cancer
Cited by: 8
Author(s): Weijun Hong, Suyun Yu, Yaqing Zhuang, Qingqing Zhang, Jiqin Wang, Xiwen Gao
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-14-869

TE-array—a high throughput tool to study transposon transcription
Cited by: 12
Author(s): Veena P. Gnanakkan, Andrew E. Jaffe, Lixin Dai, Jie Fu, Sarah J. Wheelan, Hyam I. Levitsky, Jef D. Boeke, Kathleen H. Burns
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-12-81

Population transcriptomics of Drosophila melanogaster females
Cited by: 45
Author(s): Lena Müller, Stephan Hütter, Rayna Stamboliyska, Sarah S. Saminadin-Peter, Wolfgang Stephan, John Parsch
Software Mentions: 1
Published: over 15 years ago

10.1155/2014/498318

Development and Maturation of the Immune System in Preterm Neonates: Results from a Whole Genome Expression Study
Cited by: 13
Author(s): Magdalena Zasada, Przemko Kwinta, Wojciech Durlak, Mirosław Bik-Multanowski, Anna Madetko‐Talowska, Jacek J Pietrzyk
Software Mentions: 1
Published: almost 13 years ago

10.1007/s11356-019-05350-4

Correlation between pri-miR-124 (rs531564) polymorphism and congenital heart disease susceptibility in Chinese population at two different altitudes: a case-control and in silico study
Cited by: 10
Author(s): Wenke Yang, Kang Yi, Hongmiao Yu, Yunhan Ding, Dehong Li, Wei Ye, Tao You, Xiaodong Xie
Software Mentions: 1
Published: over 7 years ago

10.1289/ehp.11647

One-Month Diesel Exhaust Inhalation Produces Hypertensive Gene Expression Pattern in Healthy Rats
Cited by: 54
Author(s): Reddy R. Gottipolu, J. Grace Wallenborn, Edward D. Karoly, Mette C. Schladweiler, Allen D. Ledbetter, Todd Krantz, William P. Linak, Abraham Nyska, Johnny A. Johnson, Ronald F. Thomas, Judy E. Richards, Richard H. Jaskot, Urmila P. Kodavanti
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0023682

Comprehensive Assessment of Host Responses to Ionizing Radiation by Nuclear Factor-κB Bioluminescence Imaging-Guided Transcriptomic Analysis
Cited by: 22
Author(s): Chung‐Ta Chang, Lin H, Tin Yun Ho, Chia-Cheng Li, Hsin Yi Lo, Shih-Lu Wu, Yi Huang, Ji An Liang, Chien Yun Hsiang
Software Mentions: 1
Published: about 15 years ago

10.3389/fonc.2021.699847

Gimap5 Inhibits Lung Cancer Growth by Interacting With M6PR
Cited by: 4
Author(s): Pei Dai, Zhongxiang Tang, Pinglang Ruan, Ousman Bajinka, Dan Liu, Yurong Tan
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22158205

Identification of an IL-22-Dependent Gene Signature as a Pharmacodynamic Biomarker
Cited by: 1
Author(s): Julie Rae, Jason A. Hackney, Kevin Huang, Mary E. Keir, Ann Herman
Software Mentions: 1
Published: about 5 years ago

10.1016/j.omtn.2019.02.022

RETRACTED: Bone Marrow Mesenchymal Stem Cell-Derived Exosomal MicroRNA-126-3p Inhibits Pancreatic Cancer Development by Targeting ADAM9
Cited by: 90
Author(s): Dongmei Wu, Xin Wen, Xin‐Rui Han, Shan Wang, Yongjian Wang, Min Shen, Shao‐Hua Fan, Zi-Feng Zhang, Qun Shan, Meng‐Qiu Li, Bin Hu, Jun Lü, Guiquan Chen, Yuxin Zheng
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21239051

Kisspeptin Influences the Reproductive Axis and Circulating Levels of microRNAs in Senegalese Sole
Cited by: 15
Author(s): Catarina C Oliveira, Elvira Fatsini, Ignacio Fernández, Catarina Anjos, François Chauvigné, Joan Cerdà, Robin Mjelle, Jorge M.O. Fernandes, Elsa Cabrita
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0077232

High-Throughput 3D Screening Reveals Differences in Drug Sensitivities between Culture Models of JIMT1 Breast Cancer Cells
Cited by: 152
Author(s): Vesa Hongisto, Sandra Jernström, Vidal Fey, John-Patrick Mpindi, Kristine Kleivi Sahlberg, Olli Kallioniemi, Merja Perälä
Software Mentions: 1
Published: almost 13 years ago

10.1155/2015/760698

Profiling of Selected MicroRNAs in Proliferative Eutopic Endometrium of Women with Ovarian Endometriosis
Cited by: 36
Author(s): Piotr Laudański, Radosław Charkiewicz, Agnieszka Tołwińska, Jacek Szamatowicz, Angelika Edyta Charkiewicz, Jacek Nikliński
Software Mentions: 1
Published: almost 12 years ago

10.3389/fonc.2020.606928

Autophagy Gene Panel-Based Prognostic Model in Myelodysplastic Syndrome
Cited by: 2
Author(s): Ming-Jing Wang, Weiyi Liu, Xueying Wang, Yumeng Li, Haiyan Xiao, Richeng Quan, Gang Huang, Xiaomei Hu
Software Mentions: 1
Published: over 5 years ago

10.1002/cam4.2433

The establishment of immune infiltration based novel recurrence predicting nomogram in prostate cancer
Cited by: 35
Author(s): Jialin Meng, Yi Liu, Shi-Yang Guan, Song Fan, Jun Zhou, Meng Zhang, Chaozhao Liang
Software Mentions: 1
Published: about 7 years ago

10.1155/2020/5637864

Mining miRNAs’ Expressions in Glioma Based on GEO Database and Their Effects on Biological Functions
Cited by: 2
Author(s): Ké Li, Qi Zhang, Duan Niu, Hailong Xing
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0046961

Gene and Genome Parameters of Mammalian Liver Circadian Genes (LCGs)
Cited by: 10
Author(s): Gang Wu, Jiang Zhu, Fuhong He, Weiwei Wang, Songnian Hu, Jun Yu
Software Mentions: 1
Published: about 14 years ago

10.1289/ehp.9556

Up-regulation of Tissue Factor in Human Pulmonary Artery Endothelial Cells after Ultrafine Particle Exposure
Cited by: 59
Author(s): Edward D. Karoly, Zhuowei Li, Lisa A. Dailey, Xhevahire Hyseni, Yuh‐Chin T. Huang
Software Mentions: 1
Published: over 19 years ago

10.3389/fonc.2020.00208

Malignant Evaluation and Clinical Prognostic Values of m6A RNA Methylation Regulators in Glioblastoma
Cited by: 35
Author(s): Jianyang Du, Kezuo Hou, Shan Mi, Hang Ji, Shuai Ma, Yixu Ba, Shaoshan Hu, Rui Xie, Lei Chen
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-77732-5

Spontaneous intake of essential oils after a negative postnatal experience has long-term effects on blood transcriptome in chickens
Cited by: 6
Author(s): Aline Foury, Anne Collin, Jean‐Christophe Helbling, Christine Leterrier, Marie‐Pierre Moisan, Laurence Guilloteau
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2021.744251

Chronic Stress-Induced Gene Changes In Vitro and In Vivo: Potential Biomarkers Associated With Depression and Cancer Based on circRNA- and lncRNA-Associated ceRNA Networks
Cited by: 5
Author(s): Ting Zhou, Mingming Li, Zhijun Xiao, Jian Cai, Weiwei Zhao, Jingjing Duan, Zhen Yang, Zhijun Guo, Yitian Chen, Weijia Cai, Piaopiao Huang, Chaoyong He, Feng Xu
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-15-829

Profiling of the embryonic Atlantic halibut (Hippoglossus hippoglossus L.) transcriptome reveals maternal transcripts as potential markers of embryo quality
Cited by: 29
Author(s): Maren Mommens, Jorge M.O. Fernandes, Knut Erik Tollefsen, Ian A. Johnston, Igor Babiak
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2164-10-30

Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies
Cited by: 57
Author(s): Henrik Hornshøj, Emøke Bendixen, Lene N Conley, P. Andersen, Jakob Hedegaard, Frank Panitz, Christian Berthou
Software Mentions: 1
Published: over 17 years ago

10.3389/fonc.2021.659208

Low Expression Levels of SLC22A12 Indicates a Poor Prognosis and Progresses Clear Cell Renal Cell Carcinoma
Cited by: 4
Author(s): Jiaju Xu, Yuenan Liu, Jingchong Liu, Yanhong Shou, Xiong Zhang, Hairong Xiong, Tianbo Xu, Qi Wang, Di Liu, Huageng Liang, Hongmei Yang, Xiong Yang, Xiaoping Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.00639

Long Non-coding RNA TDRKH-AS1 Promotes Colorectal Cancer Cell Proliferation and Invasion Through the β-Catenin Activated Wnt Signaling Pathway
Cited by: 10
Author(s): Jiao Yang, Jialiang Zhou, Yecheng Jin, Yingxin Yang, Mingxu Song, Ling Zhang, Jiayan Zhou, Jiwei Zhang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0050596

Identification of a Transcription Factor Controlling pH-Dependent Organic Acid Response in Aspergillus niger
Cited by: 22
Author(s): Lars Poulsen, Mikael Rørdam Andersen, Anna Eliasson Lantz, Jette Thykær
Software Mentions: 1
Published: almost 14 years ago

10.1155/2020/7283581

Identification of Key Genes of Human Advanced Diabetic Nephropathy Independent of Proteinuria by Transcriptome Analysis
Cited by: 3
Author(s): Fei Cai, Xu‐jie Zhou, Yan Jia, Weijian Yao, Jicheng Lv, Gang Liu, Li Yang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-78207-3

Maternal proteomic profiling reveals alterations in lipid metabolism in late-onset fetal growth restriction
Cited by: 9
Author(s): Cristina Paulés, L. Youssef, J. Miranda, F. Crovetto, Josep Marı́a Estanyol, Guerau Fernández, F. Crispi, E. Gratacós
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0013615

Functional Genomics of 5- to 8-Cell Stage Human Embryos by Blastomere Single-Cell cDNA Analysis
Cited by: 67
Author(s): Amparo Galán, David Montaner, Maria E. Póo, Diana Valbuena, Verónica Ruiz, Cristóbal Aguilar-Gallardo, Joaquı́n Dopazo, Carlos Simón
Software Mentions: 1
Published: almost 16 years ago

10.3389/fonc.2020.00003

Effect of m6A RNA Methylation Regulators on Malignant Progression and Prognosis in Renal Clear Cell Carcinoma
Cited by: 42
Author(s): Jiawu Wang, Chengyao Zhang, Weiyang He, Xin Gou
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/1840415

Identification, Validation, and Functional Annotations of Genome-Wide Profile Variation between Melanocytic Nevus and Malignant Melanoma
Cited by: 6
Author(s): Wei Han, Wenhao Xu, Jianxiong Wang, Jia-Min Hou, Hai-Liang Zhang, Xiaoyu Zhao, Ge Shen
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0064144

Generation and Characterization of an Nxf7 Knockout Mouse to Study NXF5 Deficiency in a Patient with Intellectual Disability
Cited by: 7
Author(s): Lieselot Vanmarsenille, Johan Verbeeck, Stefanie Belet, Anton Roebroek, Tom Van de Putte, Joke Nevelsteen, Zsuzsanna Callaerts-Végh, Rudi D’Hooge, Peter Marynen, Guy Froyen
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0004427

Detection of Gene Expression in an Individual Cell Type within a Cell Mixture Using Microarray Analysis
Cited by: 16
Author(s): Penelope A Bryant, Gordon K. Smyth, Roy M. Robins-Browne, Nigel Curtis
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0104379

Identification of Candidate Genes Associated with Leaf Senescence in Cultivated Sunflower (Helianthus annuus L.)
Cited by: 21
Author(s): Sebastián Moschen, Sofía A. Bengoa Luoni, Norma Paniego, H. Esteban Hopp, Guillermo A. A. Dosio, Paula Fernández, Ruth Amelia Heinz
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0117164

Differential Adipose Tissue Gene Expression Profiles in Abacavir Treated Patients That May Contribute to the Understanding of Cardiovascular Risk: A Microarray Study
Cited by: 5
Author(s): Maryam Shahmanesh, Kenneth L. Phillips, Meg Boothby, Jeremy W. Tomlinson
Software Mentions: 1
Published: over 11 years ago

10.1155/2018/9482726

Integration of Gene Expression Profile Data to Screen and Verify Hub Genes Involved in Osteoarthritis
Cited by: 20
Author(s): Zhaoyan Li, Qingyu Wang, Gaoyang Chen, Xin Li, Qiwei Yang, Zhenwu Du, Mingchun Ren, Yang Song, Guizhen Zhang
Software Mentions: 1
Published: about 8 years ago

10.1016/j.omto.2021.03.016

MicroRNA-499 serves as a sensitizer for lung cancer cells to radiotherapy by inhibition of CK2α-mediated phosphorylation of p65
Cited by: 2
Author(s): Yu‐Shui Ma, Bowen Shi, Haimin Lu, Pengfei Xie, Rui Xin, Zhijun Wu, Yi Shi, Yuzhen Yin, Likun Hou, Chengyou Jia, Wei Wu, Zhongwei Lv, Fei Yu, Wang Gaoren, Ji‐Bin Liu, Gengxi Jiang
Software Mentions: 1
Published: over 5 years ago

10.1155/2017/8589347

Screening for Key Pathways Associated with the Development of Osteoporosis by Bioinformatics Analysis
Cited by: 2
Author(s): Yanqing Liu, Yueqiu Wang, Yanxia Zhang, Yong Li, Hongfei Xiang, Xiaojin Peng, Bohua Chen, Guyou Jia
Software Mentions: 1
Published: almost 10 years ago

10.1289/ehp.8419

Proteomic Evaluation of Neonatal Exposure to 2,2′,4,4′,5-Pentabromodiphenyl Ether
Cited by: 68
Author(s): Henrik Alm, Birger Scholz, Celia Fischer, Kim Kultima, Henrik Viberg, Per Eriksson, Lennart Dencker, Michael Stigson
Software Mentions: 1
Published: over 20 years ago

10.3389/fonc.2018.00218

Anti-Leukemic Properties of Histamine in Monocytic Leukemia: The Role of NOX2
Cited by: 21
Author(s): Roberta Kiffin, Hanna Grauers Wiktorin, Madeleine Nilsson, Johan Aurelius, Ebru Aydin, Brianna Lenox, Jonas A. Nilsson, Anders Ståhlberg, Fredrik B. Thorén, Kristoffer Hellstrand, Anna Martner
Software Mentions: 1
Published: over 8 years ago

10.1186/s12940-016-0202-4

Long-term outdoor air pollution and DNA methylation in circulating monocytes: results from the Multi-Ethnic Study of Atherosclerosis (MESA)
Cited by: 57
Author(s): C. Gloria, Yongmei Liu, James W. MacDonald, R. Graham Barr, Kathleen Donohue, Mark Hensley, Lifang Hou, Charles E. McCall, Lindsay M. Reynolds, David S. Siscovick, Joel D. Kaufman
Software Mentions: 1
Published: almost 10 years ago

10.3389/fonc.2021.671341

An Immune-Related lncRNA Expression Profile to Improve Prognosis Prediction for Lung Adenocarcinoma: From Bioinformatics to Clinical Word
Cited by: 10
Author(s): Boxiang Zhang, Rui Wang, Kai Li, Zi-Yang Peng, Dapeng Liu, Yunfeng Zhang, Liuzhi Zhou
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2021.720302

Validating HMMR Expression and Its Prognostic Significance in Lung Adenocarcinoma Based on Data Mining and Bioinformatics Methods
Cited by: 9
Author(s): Xia Li, Haiwei Zuo, Li Zhang, Qian Sun, Yong Xin, Longzhen Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2020.00107

miR-20a-5p/TGFBR2 Axis Affects Pro-inflammatory Macrophages and Aggravates Liver Fibrosis
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Author(s): Xiu‐Tao Fu, Jingbo Qie, Qingchun Fu, Jiafeng Chen, Yinpeng Jin, Zhen–Bin Ding
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-79598-z

Blocking PDGF-CC signaling ameliorates multiple sclerosis-like neuroinflammation by inhibiting disruption of the blood–brain barrier
Cited by: 13
Author(s): Manuel Zeitelhofer, Milena Z. Adzemovic, Christine Moessinger, Christina Stefanitsch, Carina Strell, Lars Muhl, Lou Brundin, Linda Fredriksson, Tomas Olsson, Ulf Eriksson, Ingrid Nilsson
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0172832

Genome-wide effects of MELK-inhibitor in triple-negative breast cancer cells indicate context-dependent response with p53 as a key determinant
Cited by: 24
Author(s): Marisa Simon, Fahmi Mesmar, Luísa A. Helguero, Cecilia Williams
Software Mentions: 1
Published: over 9 years ago

10.3389/fonc.2020.566365

Downregulation of miR-146b-3p Inhibits Proliferation and Migration and Modulates the Expression and Location of Sodium/Iodide Symporter in Dedifferentiated Thyroid Cancer by Potentially Targeting MUC20
Cited by: 13
Author(s): Shasha Hou, Xiaorui Xie, Jing Zhao, Cailan Wu, Ning Li, Zhaowei Meng, Chunquan Cai, Jian Tan
Software Mentions: 1
Published: almost 6 years ago

10.1186/1476-069X-10-5

In utero exposure to butyl benzyl phthalate induces modifications in the morphology and the gene expression profile of the mammary gland: an experimental study in rats
Cited by: 49
Author(s): Raquel Moral, Julia Santucci-Pereira, Thomas J. Wang, Irma H. Russo, Coral A. Lamartiniere, José Russo
Software Mentions: 1
Published: over 15 years ago

10.1016/j.omto.2020.03.021

Analysis of Lung Adenocarcinoma Subtypes Based on Immune Signatures Identifies Clinical Implications for Cancer Therapy
Cited by: 43
Author(s): Feng Xu, Jiexin Chen, Xianghong Yang, Xin-Bin Hong, Zixiong Li, Ling Lin, Yongsong Chen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0048651

Py2T Murine Breast Cancer Cells, a Versatile Model of TGFβ-Induced EMT In Vitro and In Vivo
Cited by: 60
Author(s): Lorenz Waldmeier, Nathalie Meyer-Schaller, Maren Diepenbruck, Gerhard Christofori
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12864-015-1393-8

Pichia pastoris regulates its gene-specific response to different carbon sources at the transcriptional, rather than the translational, level
Cited by: 70
Author(s): Roland Prielhofer, Stephanie P. Cartwright, Alexandra B. Graf, Minoska Valli, Roslyn M. Bill, Diethard Mattanovich, Brigitte Gasser
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-10-236

Transcriptomics reveals extensive inducible biotransformation in the soil-dwelling invertebrate Folsomia candida exposed to phenanthrene
Cited by: 65
Author(s): Benjamin Nota, Mirte Bosse, Bauke Ylstra, Nico M. van Straalen, Dick Roelofs
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0005292

Short-Term Striatal Gene Expression Responses to Brain-Derived Neurotrophic Factor Are Dependent on MEK and ERK Activation
Cited by: 51
Author(s): Özgün Gökçe, Heike Runne, Aléxandre Kuhn, Ruth Lüthi-Carter
Software Mentions: 1
Published: over 17 years ago

10.1210/en.2014-1302

Repair-Related Activation of Hedgehog Signaling in Stromal Cells Promotes Intrahepatic Hypothyroidism
Cited by: 43
Author(s): Brittany N. Bohinc, Gregory A. Michelotti, Guanhua Xie, Herbert Pang, Ayako Suzuki, Cynthia D. Guy, Dawn Piercy, Leandi Krüger, Marzena Swiderska‐Syn, Mariana Verdelho Machado, Thiago A. Pereira, Ann Marie Zavacki, Manal F. Abdelmalek, Anna Mae Diehl
Software Mentions: 1
Published: almost 12 years ago

10.1080/21505594.2018.1526528

A possible role for fumagillin in cellular damage during host infection by Aspergillus fumigatus
Cited by: 31
Author(s): Xabier Guruceaga, Guillermo Ezpeleta-Lobato, Emilio Mayayo, Mónica Sueiro-Olivares, Ana Abad-Díaz-de-Cerio, José Manuel Aguirre Urízar, Hong G. Liu, Philipp Wiemann, Jin Woo Bok, Scott G. Filler, Nancy P. Keller, Fernando Hernando, Andoni Ramirez‐Garcia, Aitor Rementerı́a
Software Mentions: 1
Published: about 8 years ago

10.1530/ERC-13-0222

IL6 sensitizes prostate cancer to the antiproliferative effect of IFNα2 through IRF9
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Author(s): Holger H.H. Erb, Regina V Langlechner, Patrizia Moser, Florian Handle, Tineke Casneuf, Karin Verstraeten, Bettina Schlick, Georg Schäfer, Brett M. Hall, Kate Sasser, Zoran Čulig, Frédéric R. Santer
Software Mentions: 1
Published: about 13 years ago

10.1002/ece3.1933

The transcriptomic basis of tissue‐ and nutrition‐dependent sexual dimorphism in the beetle Onthophagus taurus
Cited by: 17
Author(s): Cristina C. Ledón‐Rettig, Armin P. Moczek
Software Mentions: 1
Published: over 10 years ago

10.1002/ece3.1565

Scaling nitrogen and carbon interactions: what are the consequences of biological buffering?
Cited by: 4
Author(s): David J. Weston, Alistair Rogers, Timothy J. Tschaplinski, Lee E. Gunter, Sara Jawdy, Nancy L. Engle, Lindsey E. Heady, Gerald A. Tuskan, Stan D. Wullschleger
Software Mentions: 1
Published: over 11 years ago

10.3389/fonc.2021.681777

Bioinformatics Analysis and Functional Verification of ADAMTS9-AS1/AS2 in Lung Adenocarcinoma
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Author(s): Wei Liu, Wei Luo, Peijie Zhou, Yong Cheng, Liting Qian
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2020.00363

The Interaction Between lncRNA SNHG6 and hnRNPA1 Contributes to the Growth of Colorectal Cancer by Enhancing Aerobic Glycolysis Through the Regulation of Alternative Splicing of PKM
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Author(s): Zhixian Lan, Xiang Yao, Kangyue Sun, Aimin Li, Side Liu, Xinke Wang
Software Mentions: 1
Published: over 6 years ago

10.17179/excli2019-1893

Common transcriptional programs and the role of chemokine (C-C motif) ligand 20 (CCL20) in cell migration of cholangiocarcinoma.
Cited by: 3
Author(s): Hay Mar Win Maung, Waraporn Chan-On, Nawapol Kunkeaw, Prasong Khaenam
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-79611-5

Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance
Cited by: 8
Author(s): Jan Félix, Claire Siebert, Julia Novion Ducassou, Jérôme Nigou, Pierre Garcia, Angélique Fraudeau, Karine Huard, Caroline Mas, Céline Brochier-Armanet, Yohann Couté, Irina Gutsche, Patricia Renesto
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12974-018-1386-z

The atypical RhoGTPase RhoE/Rnd3 is a key molecule to acquire a neuroprotective phenotype in microglia
Cited by: 10
Author(s): Veronika E. Neubrand, Irene Forte-Lago, Marta Caro, Mario Delgado
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0175473

Molecular analysis of Culex quinquefasciatus larvae responses to Lysinibacillus sphaericus Bin toxin
Cited by: 9
Author(s): Chontida Tangsongcharoen, Natapong Jupatanakul, Boonhiang Promdonkoy, George Dimopoulos, Panadda Boonserm
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0020043

Differential Proteomics in Dequeened Honeybee Colonies Reveals Lower Viral Load in Hemolymph of Fertile Worker Bees
Cited by: 21
Author(s): Dries Cardoen, Ulrich Ernst, Matthias Van Vaerenbergh, Bart Boerjan, Dirk C. de Graaf, Tom Wenseleers, Liliane Schoofs, Peter Verleyen
Software Mentions: 1
Published: over 15 years ago

10.3389/fonc.2021.647273

Development of a Prognostic Model for Ovarian Cancer Patients Based on Novel Immune Microenvironment Related Genes
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Author(s): Wei Wang, Qianqian Wu, Ziheng Wang, Shengxiang Ren, Hanyu Shen, Wenyu Shi, Yunzhao Xu
Software Mentions: 1
Published: over 5 years ago

10.3892/mmr.2014.2756

Neuronal calcium signaling pathways are associated with the development of epilepsy
Cited by: 14
Author(s): Fanjuan Meng, Yu You, Zhiliang Liu, Jianming Liu, Hu Ding, Ran Xu
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0056122

Differential Effects of Drug Interventions and Dietary Lifestyle in Developing Type 2 Diabetes and Complications: A Systems Biology Analysis in LDLr−/− Mice
Cited by: 21
Author(s): Marijana Radonjić, Peter Y. Wielinga, Suzan Wopereis, Thomas Kelder, Varshna Goelela, Lars Verschuren, Karin Toet, Wim van Duyvenvoorde, Bianca van der Werff van der Vat, Johanna H. M. Stroeve, N.H.P. Cnubben, Teake Kooistra, Ben van Ommen, Robert Kleemann
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0206608

Regularization and grouping -omics data by GCA method: A transcriptomic case
Cited by: 3
Author(s): Monika Piwowar, Kinga A. Kocemba‐Pilarczyk, Piotr Piwowar
Software Mentions: 1
Published: almost 8 years ago

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