bioconductor: limma | Projects | Ecosyste.ms: Papers

10.3389/fmolb.2020.573327

Mapping the Multi-Organ miRNA-mRNA Regulatory Network in LPS-Mediated Endotoxemic Mice: Exploring the Shared Underlying Key Genes and Mechanisms
Cited by: 3
Author(s): Cong Zhang, Ying Liao, Zhihao Liu, Lijin Zeng, Zhihua Peng, Jinli Liao, Zhen Yang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0155191

Maternal Whole Blood Gene Expression at 18 and 28 Weeks of Gestation Associated with Spontaneous Preterm Birth in Asymptomatic Women
Cited by: 47
Author(s): Yujing J. Heng, Craig E. Pennell, Sheila McDonald, Angela Vinturache, Jingxiong Xu, Mary W. F. Lee, Laurent Briollais, Andrew W. Lyon, Donna M. Slater, Alan D. Bocking, Lawrence de Koning, David M. Olson, Siobhan M. Dolan, Suzanne Tough, Stephen J. Lye
Software Mentions: 1
Published: over 10 years ago

10.7150/jca.57255

circ0101675 promotes malignant process via sponging miR-1278 and upregulating WNT3A/5A in non-small cell lung cancer
Cited by: 11
Author(s): Wei Du, Jianpeng Hu, Rong Hu, Min Yang, Yun Peng, Zhiwei Zhang, Yuehua Li, Xiu‐Sheng He
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0176139

Hypomethylating agents synergize with irinotecan to improve response to chemotherapy in colorectal cancer cells
Cited by: 28
Author(s): Anup Sharma, Rajita Vatapalli, Eihab Abdelfatah, K. Wyatt McMahon, Zachary Kerner, Angela A. Guzzetta, Jasvinder Singh, Cynthia A. Zahnow, Stephen B. Baylin, Sashidhar R. Yerram, Yue Hu, Nilofer S. Azad, Nita Ahuja
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0135520

Pharmacokinetics and Pharmacodynamics with Extended Dosing of CC-486 in Patients with Hematologic Malignancies
Cited by: 52
Author(s): Eric Laille, Tao Shi, Guillermo Garcia‐Manero, Christopher R. Cogle, Steven D. Gore, Joel Hetzer, Keshava Kumar, Barry S. Skikne, Kyle J. MacBeth
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0228195

GPCR-induced YAP activation sensitizes fibroblasts to profibrotic activity of TGFβ1
Cited by: 19
Author(s): Katarina Zmajkovicova, Yasmina Bauer, Katalin Menyhart, Marie Schnoebelen, Diego Freti, Maxime Boucher, Bérengère Renault, R. O. Studer, Magdalena Birker‐Robaczewska, Axel Klenk, Oliver Nayler, John Gatfield
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0101802

Differences in miRNA Expression in Early Stage Lung Adenocarcinomas that Did and Did Not Relapse
Cited by: 27
Author(s): Mick D. Edmonds, Christine M. Eischen
Software Mentions: 1
Published: about 12 years ago

10.1111/acel.12229

Gene profiling reveals association between altered Wnt signaling and loss of T-cell potential with age in human hematopoietic stem cells
Cited by: 13
Author(s): Melissa Khoo, Stephen M. Carlin, Mark Lutherborrow, Vivek Jayaswal, D. F. David, John J. Moore
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0046673

Dynamics of Membrane Potential Variation and Gene Expression Induced by Spodoptera littoralis, Myzus persicae, and Pseudomonas syringae in Arabidopsis
Cited by: 45
Author(s): Irene Bricchi, Cinzia M. Bertea, Andrea Occhipinti, Ivan A. Paponov, Massimo E. Maffei
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-9-388

Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate
Cited by: 61
Author(s): Onguma Natalang, Emmanuel Bischoff, Guillaume Deplaine, Caroline Proux, Marie‐Agnès Dillies, Odile Sismeiro, Ghislaine Guigon, Serge Bonnefoy, Jintana Patarapotikul, Odile Mercereau–Puijalon, Jean‐Yves Coppée, Peter H. David
Software Mentions: 1
Published: about 18 years ago

10.1111/acel.13015

Aging induces cardiac mesenchymal stromal cell senescence and promotes endothelial cell fate of the CD90 + subset
Cited by: 27
Author(s): Hélène Martini, Jason S. Iacovoni, Damien Maggiorani, Marianne Dutaur, Dimitri Marsal, Jérôme Roncalli, Romain Itier, Camille Dambrin, Nathalie Pizzinat, Jeanne Mialet‐Perez, Daniel Cussac, Angelo Parini, Lise Lefèvre, Victorine Douin‐Echinard
Software Mentions: 1
Published: about 7 years ago

10.1007/s00432-020-03287-7

Microarray analysis of the expression profile of immune-related gene in rapid recurrence early-stage lung adenocarcinoma
Cited by: 9
Author(s): Jie Liu, Xia Yang, Liang Zhang, Bo Yang, Wenwang Rao, Mengxia Li, Nan Dai, Yuxin Yang, Chengyuan Qian, Lei Zhang, Hualiang Xiao, Dong Wang
Software Mentions: 1
Published: over 6 years ago

10.1002/jcb.27181

MiR‐145 affected the circular RNA expression in prostate cancer LNCaP cells
Cited by: 27
Author(s): Jinhua He, Zeping Han, Jiacheng Zhou, Wei Ming Chen, Yubing Lv, Men Ling He, Yuguang Li
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0001398

Molecular Characterization of Spontaneous Mesenchymal Stem Cell Transformation
Cited by: 148
Author(s): Daniel Rubio, Sílvia García, Maria F. Paz, Teresa de la Cueva, Luis A. López-Fernández, Alison C. Lloyd, Javier García‐Castro, António Bernad
Software Mentions: 1
Published: almost 19 years ago

10.3390/ijms21196988

Proteomics Analysis of Plasma Membrane Fractions of the Root, Leaf, and Flower of Rice
Cited by: 2
Author(s): Yukimoto Iwasaki, Takafumi Itoh, Yusuke Hagi, Sakura Matsuta, Aki Nishiyama, Genki Chaya, Yuki Kobayashi, Kotaro Miura, Setsuko Komatsu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0017840

Adjunctive Dexamethasone Affects the Expression of Genes Related to Inflammation, Neurogenesis and Apoptosis in Infant Rat Pneumococcal Meningitis
Cited by: 22
Author(s): C. Blaser, Matthias Wittwer, Denis Grandgirard, Stephen L. Leib
Software Mentions: 1
Published: over 15 years ago

10.1083/jcb.201704115

Regulation of lipid droplets by metabolically controlled Ldo isoforms
Cited by: 73
Author(s): Vítor Teixeira, Lisa Johnsen, Fernando Martínez-Montañés, Alexandra Grippa, Laura Buxó, Fátima-Zahra Idrissi, Christer S. Ejsing, Pedro Carvalho
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0061580

Transcriptional and Metabolic Changes Associated to the Infection by Fusarium verticillioides in Maize Inbreds with Contrasting Ear Rot Resistance
Cited by: 49
Author(s): Valeria A. Campos-Bermudez, Carolina M. Fauguel, Marcos A. Tronconi, Paula Casati, Daniel A. Presello, Carlos S. Andreo
Software Mentions: 1
Published: over 13 years ago

10.1111/jcmm.12616

Allergenic Can f 1 and its human homologue Lcn-1 direct dendritic cells to induce divergent immune responses
Cited by: 7
Author(s): Beate Posch, Christian Irsara, Fabian S. Gamper, M. Herrmann, Daniel Bindreither, Dietmar Fuchs, Norbert Reider, Bernhard Redl, Christine Heufler
Software Mentions: 1
Published: about 11 years ago

10.1111/jcmm.12667

Complement inhibition decreases early fibrogenic events in the lung of septic baboons
Cited by: 33
Author(s): Robert Silasi‐Mansat, Hua Zhu, Constantin Georgescu, Narcis I. Popescu, Ravi S. Keshari, G. Peer, Cristina Lupu, Fletcher B. Taylor, H. Anne Pereira, Gary T. Kinasewitz, John D. Lambris, Florea Lupu
Software Mentions: 1
Published: about 11 years ago

10.1111/jcmm.13249

Perfusion of isolated rat kidney with Mesenchymal Stromal Cells/Extracellular Vesicles prevents ischaemic injury
Cited by: 87
Author(s): Marilena Gregorini, Valeria Corradetti, Eleonora Francesca Pattonieri, Chiara Rocca, Samantha Milanesi, Andréa Peloso, Silvana Canevari, Loris De Cecco, Matteo Dugo, Maria Antonietta Avanzini, Melissa Mantelli, Marcello Maestri, Pasquale Esposito, Stefania Bruno, Carmelo Libetta, Antonio Dal Canton, Teresa Rampino
Software Mentions: 1
Published: over 9 years ago

10.1111/jcmm.13640

A panel consisting of three novel circulating lncRNAs, is it a predictive tool for gastric cancer?
Cited by: 22
Author(s): Jingjing Liu, Jiajun Wang, Yongxi Song, Bin Ma, Junlong Luo, Zhongran Ni, Peng Gao, Jingwei Sun, Jiang Zhao, Xiaowan Chen, Zhenning Wang
Software Mentions: 1
Published: over 8 years ago

10.1111/jcmm.13620

Up‐regulation of miR‐10b‐3p promotes the progression of hepatocellular carcinoma cells via targeting <scp>CMTM</scp> 5 
Cited by: 24
Author(s): Lina Guan, Degang Ji, Na Liang, Shuo Li, Baozhen Sun
Software Mentions: 1
Published: over 8 years ago

10.1111/jcmm.13684

Dysregulated circRNAs in plasma from active tuberculosis patients
Cited by: 34
Author(s): Zhengjun Yi, Kunshan Gao, Ruifang Li, Yurong Fu
Software Mentions: 1
Published: over 8 years ago

10.1111/jcmm.13856

Long non‐coding <scp>RNA CRNDE</scp> promotes the proliferation, migration and invasion of hepatocellular carcinoma cells through miR‐217/<scp>MAPK</scp>1 axis
Cited by: 55
Author(s): Haihao Wang, Jun Ke, Qiannan Guo, Kan‐Paatib Barnabo Nampoukime, Pei-Wen Yang, Ke Ma
Software Mentions: 1
Published: about 8 years ago

10.1111/acel.12696

Plasticity of lifelong calorie-restricted C57BL/6J mice in adapting to a medium-fat diet intervention at old age
Cited by: 4
Author(s): Fenni Rusli, Mark V. Boekschoten, Vincenzo Borelli, Chen Sun, Carolien Lute, Aswin Menke, Joost van den Heuvel, Stefano Salvioli, Claudio Franceschi, Michael Müller, Wilma T. Steegenga
Software Mentions: 1
Published: almost 9 years ago

10.1111/jcmm.14078

MicroRNA‐488 inhibits endometrial glandular epithelial cell proliferation, migration, and invasion in endometriosis mice via Wnt by inhibiting FZD7
Cited by: 26
Author(s): Hui Zhu, Xi-Xia Cao, Juan Liu, Hua Hua
Software Mentions: 1
Published: over 7 years ago

10.1111/jcmm.14426

Comprehensive proteogenomic analysis of human embryonic and induced pluripotent stem cells
Cited by: 11
Author(s): Elvira Immacolata Parrotta, Stefania Scalise, Domenico Taverna, Maria Teresa De Angelis, G. B. De Sarro, Marco Gaspari, Gianluca Santamaria, Giovanni Cuda
Software Mentions: 1
Published: over 7 years ago

10.1111/jcmm.14402

MicroRNA‐539 functions as a tumour suppressor in prostate cancer via the TGF‐β/Smad4 signalling pathway by down‐regulating DLX1
Cited by: 12
Author(s): Bin Sun, Yingying Fan, Aijun Yang, Lunan Liang, Jinghe Cao
Software Mentions: 1
Published: over 7 years ago

10.1111/jcmm.14079

MicroRNA‐351 eases insulin resistance and liver gluconeogenesis via the PI3K/AKT pathway by inhibiting FLOT2 in mice of gestational diabetes mellitus
Cited by: 50
Author(s): Shuhong Chen, Xiao‐Nan Liu, Yan Peng
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-14-861

The role of Dichaete in transcriptional regulation during Drosophila embryonic development
Cited by: 32
Author(s): J. Aleksić, Enrico Ferrero, Bettina Fischer, Shih Pei Shen, Steven Russell
Software Mentions: 1
Published: almost 13 years ago

10.1111/jcmm.14552

Up‐regulated CST5 inhibits bone resorption and activation of osteoclasts in rat models of osteoporosis via suppression of the NF‐κB pathway
Cited by: 11
Author(s): Fei Wang, Chuanzhu Zhang, Wei Ge, Guoqiang Zhang
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0023682

Comprehensive Assessment of Host Responses to Ionizing Radiation by Nuclear Factor-κB Bioluminescence Imaging-Guided Transcriptomic Analysis
Cited by: 22
Author(s): Chung‐Ta Chang, Lin H, Tin Yun Ho, Chia-Cheng Li, Hsin Yi Lo, Shih-Lu Wu, Yi Huang, Ji An Liang, Chien Yun Hsiang
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0050596

Identification of a Transcription Factor Controlling pH-Dependent Organic Acid Response in Aspergillus niger
Cited by: 22
Author(s): Lars Poulsen, Mikael Rørdam Andersen, Anna Eliasson Lantz, Jette Thykær
Software Mentions: 1
Published: almost 14 years ago

10.1111/jcmm.14537

PON1 hypermethylation is associated with progression of renal cell carcinoma
Cited by: 8
Author(s): Xin Li, Qian Yu
Software Mentions: 1
Published: about 7 years ago

10.1111/jcmm.14582

Elevated hsa‐miR‐590‐3p expression down‐regulates HMGB2 expression and contributes to the severity of IgA nephropathy
Cited by: 9
Author(s): Yunkai Zhai, Yuanyuan Qi, Xiaoyan Long, Dou Yu, Dong Li, Genyang Cheng, Jing Xiao, Zhangsuo Liu, Zhanzheng Zhao
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0013615

Functional Genomics of 5- to 8-Cell Stage Human Embryos by Blastomere Single-Cell cDNA Analysis
Cited by: 67
Author(s): Amparo Galán, David Montaner, Maria E. Póo, Diana Valbuena, Verónica Ruiz, Cristóbal Aguilar-Gallardo, Joaquı́n Dopazo, Carlos Simón
Software Mentions: 1
Published: almost 16 years ago

10.1111/jcmm.14766

Pancreatic cancer cell–derived exosomal microRNA‐27a promotes angiogenesis of human microvascular endothelial cells in pancreatic cancer via BTG2
Cited by: 62
Author(s): Dan Shang, Chao Xie, Jin Hu, Jinru Tan, Yufeng Yuan, Zhisu Liu, Zhiyong Yang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0117164

Differential Adipose Tissue Gene Expression Profiles in Abacavir Treated Patients That May Contribute to the Understanding of Cardiovascular Risk: A Microarray Study
Cited by: 5
Author(s): Maryam Shahmanesh, Kenneth L. Phillips, Meg Boothby, Jeremy W. Tomlinson
Software Mentions: 1
Published: over 11 years ago

10.1111/jcmm.14875

Circular RNA hsa_circRNA_002178 silencing retards breast cancer progression via microRNA‐328‐3p‐mediated inhibition of COL1A1
Cited by: 62
Author(s): Ting Liu, Ping Ye, Yuanyuan Ye, Sen Lu, Baohui Han
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21217812

Circular RNAs and Their Linear Transcripts as Diagnostic and Prognostic Tissue Biomarkers in Prostate Cancer after Prostatectomy in Combination with Clinicopathological Factors
Cited by: 6
Author(s): Hannah Rochow, Monika Jung, Sabine Weickmann, Bernhard Ralla, Carsten Stephan, Sefer Elezkurtaj, Ergin Kilic, Zhao Zhi, Klaus Jung, Annika Fendler, Antonia Franz
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0206608

Regularization and grouping -omics data by GCA method: A transcriptomic case
Cited by: 3
Author(s): Monika Piwowar, Kinga A. Kocemba‐Pilarczyk, Piotr Piwowar
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12967-019-02178-x

ROR2 induces cell apoptosis via activating IRE1α/JNK/CHOP pathway in high-grade serous ovarian carcinoma in vitro and in vivo
Cited by: 12
Author(s): Rui Li, Tianfeng Liu, Juanjuan Shi, Wenqing Luan, Wei Xuan, Jiangtao Yu, Hongluan Mao, Peishu Liu
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0089596

Highly Immunoreactive IgG Antibodies Directed against a Set of Twenty Human Proteins in the Sera of Patients with Amyotrophic Lateral Sclerosis Identified by Protein Array
Cited by: 33
Author(s): Caroline May, Eckhard Nordhoff, Swaantje Casjens, Michael Turewicz, Martin Eisenacher, Ralf Gold, Thomas Brüning, Beate Pesch, Christian Stephan, Dirk Woitalla, Botond Penke, Tamás Janáky, Dezső Virók, László Szabó, J. Engelhardt, Helmut E. Meyer
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms21228479

Establishment of a Gene Signature to Predict Prognosis for Patients with Lung Adenocarcinoma
Cited by: 17
Author(s): Zhaodong Li, Fanghua Qi, Fan Li
Software Mentions: 1
Published: almost 6 years ago

10.1111/jcmm.15424

Identification of circRNA and mRNA expression profiles and functional networks of vascular tissue in lipopolysaccharide‐induced sepsis
Cited by: 17
Author(s): Mu Wen Nie, Ye Chen Han, Zhu Jun Shen, Hongzhi Xie
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.15438

UHRF1 predicts poor prognosis by triggering cell cycle in lung adenocarcinoma
Cited by: 6
Author(s): Zhenbo Tu, Xinzhou Deng, Shengqi Hou, Feng Ai, Qiuping Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21228759

Phylostratic Shift of Whole-Genome Duplications in Normal Mammalian Tissues towards Unicellularity Is Driven by Developmental Bivalent Genes and Reveals a Link to Cancer
Cited by: 27
Author(s): Olga V. Anatskaya, Alexander E. Vinogradov, Ninel M. Vainshelbaum, Alessandro Giuliani, Jekaterina Ērenpreisa
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-14-631

Efficient utilization of aerobic metabolism helps Tibetan locusts conquer hypoxia
Cited by: 27
Author(s): Dejian Zhao, Zhenyu Zhang, Arianne Cease, Jon F. Harrison, Le Kang
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0097162

Changes in Gene Expression Associated with FTO Overexpression in Mice
Cited by: 32
Author(s): Myrte Merkestein, James S. McTaggart, Sheena Lee, Holger Kramer, Fiona McMurray, Mathilde Lafond, Lily Boutens, Roger D. Cox, Frances M. Ashcroft
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-13-305

De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system
Cited by: 34
Author(s): Mark P. Peterson, Danielle J. Whittaker, Shruthi Ambreth, Suhas Sureshchandra, Aaron Buechlein, Ram Podicheti, Jeong-Hyeon Choi, Zhao Lai, Keithanne Mockatis, John K. Colbourne, Haixu Tang, Ellen D. Ketterson
Software Mentions: 1
Published: almost 15 years ago

10.3390/ijms21239051

Kisspeptin Influences the Reproductive Axis and Circulating Levels of microRNAs in Senegalese Sole
Cited by: 15
Author(s): Catarina C Oliveira, Elvira Fatsini, Ignacio Fernández, Catarina Anjos, François Chauvigné, Joan Cerdà, Robin Mjelle, Jorge M.O. Fernandes, Elsa Cabrita
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0073024

IKKα/CHUK Regulates Extracellular Matrix Remodeling Independent of Its Kinase Activity to Facilitate Articular Chondrocyte Differentiation
Cited by: 38
Author(s): Eleonora Olivotto, Miguel Otero, Annalisa Astolfi, Daniela Platano, Angelo Facchini, Stefania Pagani, Flavio Flamigni, Andrea Facchini, Mary B. Goldring, Rosa Maria Borzı̀, Kenneth B. Marcu
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0018640

Identification of Prognostic Molecular Features in the Reactive Stroma of Human Breast and Prostate Cancer
Cited by: 137
Author(s): Anne Planche, Marina Bacac, Paolo Provero, Carlo Fusco, Mauro Delorenzi, Jean-Christophe Stehle, Ivan Stamenkovic
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0104650

A Novel Glycated Hemoglobin A1c-Lowering Traditional Chinese Medicinal Formula, Identified by Translational Medicine Study
Cited by: 10
Author(s): Hsin Yi Lo, Chien Yun Hsiang, Tsai‐Chung Li, Hui Huang, Jaw Chyun Chen, Tin Yun Ho
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0006952

Gene Expression Profiling in Cells with Enhanced γ-Secretase Activity
Cited by: 6
Author(s): Alexandra I. Magold, Matthias Cacquevel, Patrick C. Fraering
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0125013

Characterization of Differentially Expressed Genes Involved in Pathways Associated with Gastric Cancer
Cited by: 54
Author(s): Hao Li, Beiqin Yu, Jianfang Li, Liping Su, Min Yan, Jun Zhang, Chen Li, Zhenggang Zhu, Bingya Liu
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-9-173

Transcriptome architecture across tissues in the pig
Cited by: 46
Author(s): André Luiz Julien Ferraz, Alejandro González-Ojeda, Manel López‐Béjar, Lana Teixeira Fernandes, Anna Castelló, Josep María Folch, Miguel Pérez‐Enciso
Software Mentions: 1
Published: over 18 years ago

10.1111/jcmm.15862

Identification of Hub genes associated with infection of three lung cell lines by SARS‐CoV‐2 with integrated bioinformatics analysis
Cited by: 8
Author(s): Tian-Ao Xie, Meng-Yi Han, Xiaorui Su, Hou-He Li, Ji-Chun Chen, Xu‐Guang Guo
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0002548

Novel MicroRNA Candidates and miRNA-mRNA Pairs in Embryonic Stem (ES) Cells
Cited by: 48
Author(s): Peili Gu, Jeffrey G. Reid, Xiaolian Gao, Chad A. Shaw, Chad J. Creighton, Peter L. Tran, Xiaochuan Zhou, Rafal Drabek, David L. Steffen, David M. Hoang, Michelle K. Weiss, A.O. Naghavi, Jad El-daye, Mahjabeen F. Khan, Glen B. Legge, David A. Wheeler, Richard A. Gibbs, Jonathan Miller, Austin J. Cooney, Preethi H. Gunaratne
Software Mentions: 1
Published: over 18 years ago

10.1111/jcmm.15845

Respiratory syncytial virus infection‐induced mucus secretion by down‐regulation of miR‐34b/c‐5p expression in airway epithelial cells
Cited by: 17
Author(s): Xiao Du, Yu Yang, Gelei Xiao, Ming Yang, Yuan Lin, Ling Qin, Ruoxi He, Leyuan Wang, Mengping Wu, Shuangyan Wu, Juntao Feng, Yang Xiang, Xiangping Qu, Huijun Liu, Xiaoqun Qin, Chi Liu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0222513

PBMCs transcriptome profiles identified breed-specific transcriptome signatures for PRRSV vaccination in German Landrace and Pietrain pigs
Cited by: 9
Author(s): M. S. Islam, Christiane Neuhoff, Sharmin Aqter Rony, Christine Große‐Brinkhaus, Muhammad Jasim Uddin, Michael Hölker, Dawit Tesfaye, Ernst Tholen, K. Schellander, Maren Julia Pröll‐Cornelissen
Software Mentions: 1
Published: about 7 years ago

10.1111/jcmm.15894

CircHivep2 contributes to microglia activation and inflammation via miR‐181a‐5p/SOCS2 signalling in mice with kainic acid‐induced epileptic seizures
Cited by: 26
Author(s): Xiaoying Gao, Mian Guo, Jie Liu, Yixin Zhu, Ying Cui, Shu Shengjie, Gou Haiyan, Feng-Yan Sun, Shijie Qi, Jing Sun
Software Mentions: 1
Published: about 6 years ago

10.1111/jcmm.15984

Epigenetic alternations of microRNAs and DNA methylation contribute to gestational diabetes mellitus
Cited by: 21
Author(s): Weiqiang Zhu, Yuxia Shen, Junwei Liu, Xiaoping Fei, Zhaofeng Zhang, Min Li, Xiaohong Chen, Jianhua Xu, Qianxi Zhu, Weijin Zhou, Meihua Zhang, Shangqing Liu, Jing Du
Software Mentions: 1
Published: almost 6 years ago

10.1111/acel.13013

Senescence‐associated tissue microenvironment promotes colon cancer formation through the secretory factor GDF15
Cited by: 58
Author(s): Yi Guo, Jessica Ayers, Kelly Carter, Ting Wang, Sean K. Maden, Darwin Edmond, Polly Newcomb P, Christopher Li, Cornelia M. Ulrich, Ming Yu, William M. Grady
Software Mentions: 1
Published: about 7 years ago

10.1523/ENEURO.0310-19.2019

TrkB Signaling Influences Gene Expression in Cortistatin-Expressing Interneurons
Cited by: 8
Author(s): Kristen R. Maynard, Alisha Kardian, Joanne M. Hill, Yishan Mai, Brianna K. Barry, Henry L. Hallock, Andrew E. Jaffe
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0193335

Molecular adaptations to phosphorus deprivation and comparison with nitrogen deprivation responses in the diatom Phaeodactylum tricornutum
Cited by: 68
Author(s): Leila Alipanah, Per Winge, Jens Rohloff, Javad Najafi, Tore Brembu, Atle M. Bones
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0013606

Yeast Biological Networks Unfold the Interplay of Antioxidants, Genome and Phenotype, and Reveal a Novel Regulator of the Oxidative Stress Response
Cited by: 15
Author(s): José M. Otero, Manos A. Papadakis, D.B.R.K. Gupta Udatha, Jens Nielsen, Gianni Panagiotou
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0032875

Skin Regeneration in Adult Axolotls: A Blueprint for Scar-Free Healing in Vertebrates
Cited by: 199
Author(s): Ashley W. Seifert, James R. Monaghan, S. Randal Voss, Malcolm Maden
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-12-501

Temporal transcriptome changes induced by MDV in marek's disease-resistant and -susceptible inbred chickens
Cited by: 35
Author(s): Ying Yu, Juan Luo, Apratim Mitra, Shuang Chang, Fei Tian, Huanmin Zhang, Ping Yuan, Huaijun Zhou, Jiuzhou Song
Software Mentions: 1
Published: about 15 years ago

10.1111/jcmm.15866

Extracellular vesicles‐encapsulated let‐7i shed from bone mesenchymal stem cells suppress lung cancer via KDM3A/DCLK1/FXYD3 axis
Cited by: 22
Author(s): Jiefeng Liu, Yuhua Feng, Xinyu Zeng, Miao He, Yujing Gong, Yiping Liu
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-016-2623-4

Cyclic AMP signaling restricts activation and promotes maturation and antioxidant defenses in astrocytes
Cited by: 37
Author(s): Sonia Paco, Manuela Hummel, Virginia Plá, Lauro Sumoy, Fernando Aguado
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0128230

Genome-Wide Transcriptome Directed Pathway Analysis of Maternal Pre-Eclampsia Susceptibility Genes
Cited by: 52
Author(s): Hannah Ee Juen Yong, Phillip E. Melton, Matthew P. Johnson, Katy A. Freed, Bill Kalionis, Padma Murthi, Shaun P. Brennecke, Rosemary Keogh, Eric K. Moses
Software Mentions: 1
Published: over 11 years ago

10.1186/s12967-015-0506-0

DNA methylation analysis of phenotype specific stratified Indian population
Cited by: 43
Author(s): Harish Rotti, Sandeep Mallya, Shama Prasada Kabekkodu, Sanjiban Chakrabarty, Sameer Bhale, Ramachandra Bharadwaj, Balakrishna K Bhat, Amrish P Dedge, Vikram Ram Dhumal, G G Gangadharan, P. M. Gopinath, Periyasamy Govindaraj, Kalpana Joshi, Paturu Kondaiah, Sreekumaran Nair, SN Venugopalan Nair, Jayakrishna Nayak, B V Prasanna, Pooja Shintre, Mayura Sule, Kumarasamy Thangaraj, Bhushan Patwardhan, Marthanda Varma Sankaran Valiathan, Kapaettu Satyamoorthy
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-020-06992-2

Candidate stress biomarkers for queen failure diagnostics
Cited by: 13
Author(s): Alison McAfee, Joseph Milone, Abigail Chapman, Leonard J. Foster, Jeffery S. Pettis, David R. Tarpy
Software Mentions: 1
Published: about 6 years ago

10.1111/jcmm.15765

Cancer‐associated fibroblast‐derived exosomal microRNA‐24‐3p enhances colon cancer cell resistance to MTX by down‐regulating CDX2/HEPH axis
Cited by: 40
Author(s): Hongwei Zhang, Yi Shi, Ji‐Bin Liu, Huimin Wang, Pei‐Yao Wang, Zhijun Wu, Liu Li, Li‐Peng Gu, Ping‐Sheng Cao, Gao‐Ren Wang, Yu‐Shui Ma, Da Fu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0149263

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis
Cited by: 18
Author(s): Michael Roemer, Johannes Eichner, Andreas Dräger, Clemens Wrzodek, Finja Wrzodek, Andreas Zell
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0066278

Differentially Expressed Androgen-Regulated Genes in Androgen-Sensitive Tissues Reveal Potential Biomarkers of Early Prostate Cancer
Cited by: 28
Author(s): Dogus Murat Altintas, Nathalie Allioli, Myriam Decaussin, Simon Bernard, A. Ruffion, Jacques Samarut, Virginie Vlaeminck-Guillem
Software Mentions: 1
Published: over 13 years ago

10.1186/s40478-015-0211-5

Identification of targets for rational pharmacological therapy in childhood craniopharyngioma
Cited by: 84
Author(s): Jacob M. Gump, Andrew M. Donson, Diane K. Birks, Vladimir Amani, Karun K. Rao, Andrea Griesinger, B. K. Kleinschmidt-DeMasters, James M. Johnston, Richard C. E. Anderson, Amy Rosenfeld, Michael H. Handler, Lia Gore, Nicholas K. Foreman, Todd C. Hankinson
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0124340

Differentially Expressed MicroRNAs in Postpartum Breast Cancer in Hispanic Women
Cited by: 22
Author(s): J. Muñoz-Rodríguez, Lukáš Vrba, Bernard W. Futscher, Chengcheng Hu, Ian K. Komenaka, María Mercedes Meza-Montenegro, Luis Enrique Gutiérrez-Millán, Adrián Daneri‐Navarro, Patricia A. Thompson, Marı́a Elena Martı́nez
Software Mentions: 1
Published: over 11 years ago

10.1111/jcmm.16405

miR‐365 secreted from M2 Macrophage‐derived extracellular vesicles promotes pancreatic ductal adenocarcinoma progression through the BTG2/FAK/AKT axis
Cited by: 21
Author(s): Xin Li, Hao Xu, Jianfeng Yi, Changfeng Dong, Hui Zhang, Zhengfeng Wang, Long Miao, Wence Zhou
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.16523

Bioinformatic analysis and validation of microRNA‐508‐3p as a protective predictor by targeting NR4A3/MEK axis in pulmonary arterial hypertension
Cited by: 8
Author(s): Yi Ma, Shu-Shu Chen, Jiang Fen, Ru-Yi Ma, Huanliang Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-2988-4

CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems
Cited by: 21
Author(s): Anne Abot, Grégory Arnal, Lucas Auer, Adèle Lazuka, Delphine Labourdette, Sophie Lamarre, Lidwine Trouilh, Élisabeth Laville, Vincent Lombard, Gabrielle Potocki-Véronèse, Bernard Henrissat, Michael O’Donohue, Guillermina Hernandez-Raquet, Claire Dumon, Véronique Anton Leberre
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0012882

Gene Expression Profiles of Colonic Mucosa in Healthy Young Adult and Senior Dogs
Cited by: 7
Author(s): Dong Yong Kil, Brittany M. Vester Boler, Carolyn J. Apanavicius, Lawrence B. Schook, Kelly S. Swanson
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0133607

Transcriptional Response of Human Neurospheres to Helper-Dependent CAV-2 Vectors Involves the Modulation of DNA Damage Response, Microtubule and Centromere Gene Groups
Cited by: 9
Author(s): Stefania Piersanti, Romina Burla, Valerio Licursi, Catarina Brito, Mattia La Torre, Paula M. Alves, Daniel Simão, Carla Mottini, Sara Salinas, Rodolfo Negri, Enrico Tagliafico, Eric J. Kremer, Isabella Saggio
Software Mentions: 1
Published: about 11 years ago

10.1111/jcmm.16756

IRF1 as a potential biomarker in Mycobacterium tuberculosis infection
Cited by: 1
Author(s): Liwei Wu, Qiliang Cheng, Wen Zhu, Yanzheng Song, Yijun Zhu, Lin Wang
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.16745

TNF‐α induces up‐regulation of MicroRNA‐27a via the P38 signalling pathway, which inhibits intervertebral disc degeneration by targeting FSTL1
Cited by: 6
Author(s): Jihong Shi, Shaoyi Wang, Qiting He, Kaiwen Liu, Weihua Zhao, Qing Xie, Lei Cheng
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.203400

Establishing a three-miRNA signature as a prognostic model for colorectal cancer through bioinformatics analysis
Cited by: 9
Author(s): Yiming Wang, Lumi Huang, Nan Shan, Huiqin Ma, Songmei Lu, Xingyue Chen, Heng Long
Software Mentions: 1
Published: about 5 years ago

10.1111/jcmm.16792

P53 suppresses the progression of hepatocellular carcinoma via miR‐15a by decreasing OGT expression and EZH2 stabilization
Cited by: 10
Author(s): Zhenyu You, Dandan Peng, Yixin Cao, Yuanzhe Zhu, Jianjun Yin, Guangxing Zhang, Xiao-Dong Peng
Software Mentions: 1
Published: about 5 years ago

10.1111/jcmm.16844

MALAT1 shuttled by extracellular vesicles promotes M1 polarization of macrophages to induce acute pancreatitis via miR‐181a‐5p/HMGB1 axis
Cited by: 19
Author(s): Jie Liu, Zequn Niu, Rui Zhang, Zhuo Peng, Liming Wang, Zhong Liu, Yanxia Gao, Honghong Pei, Longfei Pan
Software Mentions: 1
Published: about 5 years ago

10.1002/jcp.28789

A miR‐206 regulated gene landscape enhances mammary epithelial differentiation
Cited by: 8
Author(s): Jun Wang, Eylem Aydoğdu, Srijita Mukhopadhyay, Luísa A. Helguero, Cecilia Williams
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-14-527

Dissecting the psoriasis transcriptome: inflammatory- and cytokine-driven gene expression in lesions from 163 patients
Cited by: 107
Author(s): William R. Swindell, Andrew Johnston, John J. Voorhees, James T. Elder, Jóhann E. Guðjónsson
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-11-414

ChIP on Chip: surprising results are often artifacts
Cited by: 65
Author(s): Torsten Waldminghaus, Kirsten Skarstad
Software Mentions: 1
Published: almost 17 years ago

10.1242/jcs.184291

Pax8 controls thyroid follicular polarity through Cadherin-16
Cited by: 34
Author(s): Petrina Koumarianou, Gonzalo Goméz-López, Pilar Santisteban
Software Mentions: 1
Published: almost 11 years ago

10.1177/0271678X211004307

Global proteomic analysis of extracellular matrix in mouse and human brain highlights relevance to cerebrovascular disease
Cited by: 11
Author(s): Alexandra Pokhilko, Gaia Brezzo, Lahiru Handunnetthi, Raphael Heilig, Rachel Lennon, Colin Smith, Stuart M. Allan, Alessandra Granata, Sanjay Sinha, T Wang, Hugh S. Markus, Alexandra Naba, Román Fischer, Tom Van Agtmael, Karen Horsburgh, M Z Cader
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-13-243

The genes and enzymes of the carotenoid metabolic pathway in Vitis vinifera L.
Cited by: 109
Author(s): Philip R. Young, Justin Graham Lashbrooke, Erik Alexandersson, Dan Jacobson, C. Moser, Riccardo Velasco, Melané A. Vivier
Software Mentions: 1
Published: over 14 years ago

10.1186/s12967-019-2042-9

Metabolic profiling reveals distinct metabolic alterations in different subtypes of pituitary adenomas and confers therapeutic targets
Cited by: 8
Author(s): Jiaxuan Feng, Hua Gao, Qi Zhang, Yang Zhou, Chuzhong Li, Sida Zhao, Liu Hong, Jinjin Yang, Shuyu Hao, Hong Wan, Zhengping Zhuang, Guowang Xu, Yazhou Zhang
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0034659

Major Cellular and Physiological Impacts of Ocean Acidification on a Reef Building Coral
Cited by: 234
Author(s): Paulina Kaniewska, Paul Campbell, David I. Kline, Mauricio Rodríguez-Lanetty, David J. Miller, Sophie Dove, Ove Høegh-Guldberg
Software Mentions: 1
Published: over 14 years ago

10.1210/clinem/dgz266

Muscle-Liver Substrate Fluxes in Exercising Humans and Potential Effects on Hepatic Metabolism
Cited by: 23
Author(s): Chunxiu Hu, Miriam Hoene, Peter Plomgaard, Jørn Bindslev Hansen, Xinjie Zhao, Jia Li, Xiaolin Wang, J Clemmesen, Niels H. Secher, Hans Ulrich Häring, Rainer Lehmann, Guowang Xu, Cora Weigert
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms22041523

Multiomics Integration in Skin Diseases with Alterations in Notch Signaling Pathway: PlatOMICs Phase 1 Deployment
Cited by: 8
Author(s): Lucas André Cavalcanti Brandão, Paola Maura Tricarico, Rossella Gratton, Almerinda Agrelli, Luisa Zupin, Haissam Abou-Saleh, Romero Marinho de Moura, Sérgio Crovella
Software Mentions: 1
Published: over 5 years ago

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Papers Mentioning limma 7,776