bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1038/s41388-018-0546-z

Regulation of human glioma cell migration, tumor growth, and stemness gene expression using a Lck targeted inhibitor
Cited by: 48
Author(s): John P. Zepecki, Kristin M. Snyder, Margot-Martinez Moreno, Eduardo Fajardo, András Fiser, Jennifer K. Ness, Atom Sarkar, Steven Toms, Nikos Tapinos
Software Mentions: 1
Published: almost 8 years ago

10.1155/2016/3650909

Toward Noninvasive Diagnosis of IgA Nephropathy: A Pilot Urinary Metabolomic and Proteomic Study
Cited by: 19
Author(s): Michaela Neprašová, Dita Maixnerová, Jan Novák, Colin Reily, Bruce A. Julian, Jan Boron, Petr Novotný, Miloslav Suchánek, Vladimı́r Tesař, Petr Kačer
Software Mentions: 1
Published: almost 10 years ago

10.1007/s00018-021-03902-x

Chronic exposure to Cytolethal Distending Toxin (CDT) promotes a cGAS-dependent type I interferon response
Cited by: 6
Author(s): Benoît J. Pons, Aurélie Pettes-Duler, Claire Naylies, Frédéric Taïeb, Catherine Bouchenot, Saleha Hashim, Patrick Rouimi, Maxime Deslande, Yannick Lippi, Gladys Mirey, Julien Vignard
Software Mentions: 1
Published: about 5 years ago

10.1007/s00018-013-1336-y

Function of the C. elegans T-box factor TBX-2 depends on SUMOylation
Cited by: 13
Author(s): Paul Huber, Tanya Crum, Lynn M. Clary, Tom Ronan, Adelaide V. Packard, Peter G. Okkema
Software Mentions: 1
Published: over 13 years ago

10.1111/os.12412

Curcumin Inhibits Proliferation of Synovial Cells by Downregulating Expression of Matrix Metalloproteinase-3 in Osteoarthritis
Cited by: 29
Author(s): Jianbin Zeng, Haidong Wang, Zhongwei Shen, Xiaodong Yao, Chengjun Wu, Tao Pan
Software Mentions: 1
Published: over 7 years ago

10.1038/s41388-018-0577-5

Integrative network biology analysis identifies miR-508-3p as the determinant for the mesenchymal identity and a strong prognostic biomarker of ovarian cancer
Cited by: 36
Author(s): Linjie Zhao, Wei Wang, Lian Xu, Tao Yi, Xia Zhao, Yuquan Wei, Louis Vermeulen, Ajay Goel, Shengtao Zhou, Xin Wang
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.681941

The Transcriptome of Paired Major and Minor Salivary Gland Tissue in Patients With Primary Sjögren’s Syndrome
Cited by: 20
Author(s): Gwenny M Verstappen, Lu Gao, Sarah Pringle, Erlin A. Haacke, Bert van der Vegt, S.C. Liefers, Vishal Patel, Yanhua Hu, Sumanta Mukherjee, Julie A. Carman, Laurence Ménard, Frederik Spijkervet, Arjan Vissink, Hendrika Bootsma, Frans G. M. Kroese
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2018.01264

PU.1 Is Required for the Developmental Progression of Multipotent Progenitors to Common Lymphoid Progenitors
Cited by: 27
Author(s): Siew Siew Pang, Carolyn A. de Graaf, Douglas J. Hilton, Nicholas D. Huntington, Sebastian Carotta, Li Wu, Stephen L. Nutt
Software Mentions: 1
Published: about 8 years ago

10.1002/2211-5463.12428

Gene expression profiles and pathway enrichment analysis of human osteosarcoma cells exposed to sorafenib
Cited by: 9
Author(s): Zhehao Dai, Haoyu Tang, Yue Pan, Junquan Chen, Yongping Li, Zhu Jun
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2017.01841

Blood Gene Expression Predicts Bronchiolitis Obliterans Syndrome
Cited by: 23
Author(s): Richard Danger, Pierre-Joseph Royer, Damien Reboulleau, Eugénie Durand, Jennifer Loy, A. N. Tissot, Philippe Lacoste, Antoine Roux, Martine Reynaud‐Gaubert, Carine Gomez, Romain Kessler, Sacha Mussot, C. Dromer, Olivier Brugière, Jean‐François Mornex, R. Guillemain, M. Dahan, Christiane Knoop, K. Botturi, Aurore Foureau, Christophe Pison, Angela Koutsokera, Laurent Nicod, Sophie Brouard, A. Magnan
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.19637

Inhibition of LSD1 epigenetically attenuates oral cancer growth and metastasis
Cited by: 41
Author(s): Saqer F. Alsaqer, Mustafa Tashkandi, Vinay K. Kartha, Yating Yang, Yazeed Alkheriji, Andrew Salama, Xaralabos Varelas, Maria A. Kukuruzinska, Stefano Monti, Manish V. Bais
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.20420

Molecular profiling identifies prognostic markers of stage IA lung adenocarcinoma
Cited by: 7
Author(s): Jie Zhang, Jinchen Shao, Lei Zhu, Ruiying Zhao, Jie Xing, Jun Wang, Guo X, Shichun Tu, Baohui Han, Kejing Yu
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2020.02165

Gene Expression in Spontaneous Experimental Autoimmune Encephalomyelitis Is Linked to Human Multiple Sclerosis Risk Genes
Cited by: 5
Author(s): Hans von Faber, Dunja Kurtoic, Gurumoorthy Krishnamoorthy, Peter Weber, Benno Pütz, Bertram Müller‐Myhsok, Frank Weber, Till F. M. Andlauer
Software Mentions: 1
Published: almost 6 years ago

10.1186/s11658-019-0183-8

Monoamine oxidase-A activity is required for clonal tumorsphere formation by human breast tumor cells
Cited by: 10
Author(s): William D. Gwynne, Mirza S. Shakeel, Jianhan Wu, Robin Hallett, Adele Girgis-Gabardo, Anna Dvorkin‐Gheva, John A. Hassell
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13018-020-01756-w

Identification of a potential gene target for osteoarthritis based on bioinformatics analyses
Cited by: 5
Author(s): Zhixi Duan, Yusheng Li, Chao Tu, Peng Xie, Yi-Han Li, Lin Qi, Zhihong Li
Software Mentions: 1
Published: about 6 years ago

10.1093/database/baab045

circExp database: an online transcriptome platform for human circRNA expressions in cancers
Cited by: 4
Author(s): Min Zhao, Yining Liu, Hong Qu
Software Mentions: 1
Published: over 5 years ago

10.15252/msb.20145486

Drugs that reverse disease transcriptomic signatures are more effective in a mouse model of dyslipidemia
Cited by: 41
Author(s): Allon Wagner, Noa Cohen, Thomas Kelder, Uri Amit, Elad Liebman, David M. Steinberg, Marijana Radonjić, Eytan Ruppin
Software Mentions: 1
Published: over 11 years ago

10.3389/fimmu.2019.00312

Fatigue in Sjögren's Syndrome: A Search for Biomarkers and Treatment Targets
Cited by: 18
Author(s): Iris L A Bodewes, Peter J. van der Spek, Leticia G. León, Annemarie J.M. Wijkhuijs, Cornelia G van Helden-Meeuwsen, Liselotte Tas, Marco W. J. Schreurs, Paul L A van Daele, Peter D. Katsikis, Marjan A. Versnel
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.719175

Construction of a Ferroptosis-Related Nine-lncRNA Signature for Predicting Prognosis and Immune Response in Hepatocellular Carcinoma
Cited by: 86
Author(s): Zhijie Xu, Bi Peng, Qiuju Liang, Xi Chen, Yuan Cai, Shuangshuang Zeng, Kewa Gao, Xiang Wang, Qiaoli Yi, Zhicheng Gong, Yuanliang Yan
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.cmet.2018.02.007

Visceral Adipose Tissue Immune Homeostasis Is Regulated by the Crosstalk between Adipocytes and Dendritic Cell Subsets
Cited by: 106
Author(s): Claire Elizabeth Macdougall, Elizabeth G. Wood, Jakob Loschko, Valeria Scagliotti, Féaron C. Cassidy, Mark E. Robinson, Niklas Feldhahn, Leandro Castellano, Mathieu-Benoı̂t Voisin, Federica M. Marelli‐Berg, Carles Gaston‐Massuet, Marika Charalambous, M. Paula Longhi
Software Mentions: 1
Published: over 8 years ago

10.22074/cellj.2018.4991

Bioinformatic Analysis Identifies Three Potentially Key Differentially Expressed Genes in Peripheral Blood Mononuclear Cells of Patients with Takayasu's Arteritis.
Cited by: 0
Author(s): Renping Huang, Yang He, Bei Sun, Bing Liu
Software Mentions: 1
Published: over 8 years ago

10.1038/oncsis.2017.33

Cyclin-dependent kinase 7 is a therapeutic target in high-grade glioma
Cited by: 52
Author(s): Sameer A. Greenall, Yi Chieh Lim, Camilla B. Mitchell, Kathleen S. Ensbey, Brett W. Stringer, Alexander L. Wilding, Geraldine M. O’Neill, Kerrie L. McDonald, Daniel J. Gough, Bryan W. Day, Terrance G. Johns
Software Mentions: 1
Published: over 9 years ago

10.1038/cddiscovery.2016.16

Mitochondrial DNA plasticity is an essential inducer of tumorigenesis
Cited by: 26
Author(s): William Lee, Jason E. Cain, Andrew Cuddihy, Jacqueline L. Johnson, Adam Dickinson, K-Y Yeung, Beena Kumar, Terrance G. Johns, D. Neil Watkins, Andrew Spencer, Justin C. St. John
Software Mentions: 1
Published: over 10 years ago

10.1038/s41389-018-0032-z

Efficacy of the highly selective focal adhesion kinase inhibitor BI 853520 in adenocarcinoma xenograft models is linked to a mesenchymal tumor phenotype
Cited by: 36
Author(s): Ulrich Hirt, Irene C. Waizenegger, Norbert Schweifer, Christian Haslinger, Daniel Gerlach, Jürgen Braunger, Ulrike Weyer-Czernilofsky, Heinz Stadtmüller, Ioannis Sapountzis, Gerd Bader, Andreas Zoephel, Bojan Bister, Anke Baum, Jens Quant, Norbert Kraut, Pilar Garin‐Chesa, Günther R. Adolf
Software Mentions: 1
Published: over 8 years ago

10.1038/s41420-021-00525-w

Hypoxic TAM-derived exosomal miR-155-5p promotes RCC progression through HuR-dependent IGF1R/AKT/PI3K pathway
Cited by: 25
Author(s): Wei Gu, Linjing Gong, Xu Wu, Xudong Yao
Software Mentions: 1
Published: about 5 years ago

10.1016/j.jprot.2014.05.007

Identification and quantification of the basal and inducible Nrf2-dependent proteomes in mouse liver: Biochemical, pharmacological and toxicological implications
Cited by: 52
Author(s): James Walsh, Rosalind E. Jenkins, Michael H. L. Wong, Adeniyi Olayanju, Helen Powell, Ian M. Copple, Paul M. O’Neill, Christopher E. Goldring, Neil R. Kitteringham, B. Kevin Park
Software Mentions: 1
Published: about 12 years ago

10.1038/s41420-018-0036-7

Characterization of dysregulated lncRNA-mRNA network based on ceRNA hypothesis to reveal the occurrence and recurrence of myocardial infarction
Cited by: 39
Author(s): Guangde Zhang, Haoran Sun, Yawei Zhang, Hengqiang Zhao, Wenjing Fan, Jianfei Li, Yingli Lv, Qiong Song, Jiayao Li, Mingyu Zhang, Hang Shi
Software Mentions: 1
Published: over 8 years ago

10.1038/s41420-021-00625-7

Dipeptidyl peptidase-4 (DPP4) inhibitor sitagliptin alleviates liver inflammation of diabetic mice by acting as a ROS scavenger and inhibiting the NFκB pathway
Cited by: 17
Author(s): Xin Wang, Jing Ke, Yingjun Zhu, Bin Cao, Ruili Yin, Yan Wang, Lingling Wei, Lijie Zhang, Longyan Yang, Dong Zhao
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.devcel.2018.10.026

Oxidative Stress in Cells with Extra Centrosomes Drives Non-Cell-Autonomous Invasion
Cited by: 89
Author(s): Teresa Arnandis, Pedro T. Monteiro, Sophie D. Adams, Victoria L. Bridgeman, Vinothini Rajeeve, Emanuela Gadaleta, Jacek Marzec, Claude Chelala, Ilaria Malanchi, Pedro R. Cutillas, Susana A. Godinho
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2019.01113

Association of LRP1B Mutation With Tumor Mutation Burden and Outcomes in Melanoma and Non-small Cell Lung Cancer Patients Treated With Immune Check-Point Blockades
Cited by: 117
Author(s): Hao Chen, Wei Chong, Qian Wu, Yueliang Yao, Min Mao, Xin Wang
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.20497

Oxidative stress-induced JNK/AP-1 signaling is a major pathway involved in selective apoptosis of myelodysplastic syndrome cells by Withaferin-A
Cited by: 11
Author(s): Karine Z. Oben, Sara S. Alhakeem, Mary K. McKenna, J. Anthony Brandon, Rajeswaran Mani, Sunil K. Noothi, Jinpeng Liu, Shailaja Akunuru, Subhra Dhar, Inder Pal Singh, Ying Liang, Chi Wang, Ahmed Abdel‐Latif, Harold F. Stills, Daret K. St. Clair, Hartmut Geiger, Natarajan Muthusamy, Kaoru Tohyama, Ramesh C. Gupta, Subbarao Bondada
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41420-021-00562-5

Implication of human endogenous retrovirus W family envelope in hepatocellular carcinoma promotes MEK/ERK-mediated metastatic invasiveness and doxorubicin resistance
Cited by: 24
Author(s): Yan Zhou, Lijuan Liu, Youyi Liu, Ping Zhou, Qiujin Yan, Honglian Yu, Xiaobei Chen, Fan Zhu
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2016.00631

Adverse Husbandry of Maraena Whitefish Directs the Immune System to Increase Mobilization of Myeloid Cells and Proinflammatory Responses
Cited by: 25
Author(s): Tomáš Korytář, Mareen Nipkow, Simone Altmann, Tom Goldammer, Bernd Köllner, Alexander Rebl
Software Mentions: 1
Published: over 9 years ago

10.1038/cddiscovery.2017.15

Cell-free chromatin from dying cancer cells integrate into genomes of bystander healthy cells to induce DNA damage and inflammation
Cited by: 38
Author(s): Indraneel Mittra, Urmila Samant, Suvarna Sharma, G. Raghuram, Tannistha Saha, Pritishkumar Tidke, Namrata Pancholi, Deepika Gupta, Preeti Prasannan, Ashwini Gaikwad, Nilesh Gardi, Rohan Chaubal, Pawan Upadhyay, Kavita Pal, Bhagyeshri Rane, Alfina Shaikh, Sameer Salunkhe, Shilpee Dutt, Pradyumna Kumar Mishra, Naveen K. Khare, Naveen Kumar Nair, Amit Dutt
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2021.736260

Glycoprotein Pathways Altered in Frontotemporal Dementia With Autoimmune Disease
Cited by: 2
Author(s): Fiona Bright, Jared S. Katzeff, John R. Hodges, Olivier Piguet, Jillian J. Kril, Glenda M. Halliday, Woojin Scott Kim
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12967-019-02178-x

ROR2 induces cell apoptosis via activating IRE1α/JNK/CHOP pathway in high-grade serous ovarian carcinoma in vitro and in vivo
Cited by: 12
Author(s): Rui Li, Tianfeng Liu, Juanjuan Shi, Wenqing Luan, Wei Xuan, Jiangtao Yu, Hongluan Mao, Peishu Liu
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2018.00031

The Activin A-Peroxisome Proliferator-Activated Receptor Gamma Axis Contributes to the Transcriptome of GM-CSF-Conditioned Human Macrophages
Cited by: 14
Author(s): Concha Nieto, Rafael Bragado, Cristina Municio, Elena Sierra‐Filardi, Bárbara Alonso, María M. Escribese, Jorge Domínguez‐Andrés, Carlos Ardavı́n, Antonio Castrillo, Miguel A. Vega, Amaya Puig‐Kröger, Ángel L. Corbí
Software Mentions: 1
Published: over 8 years ago

10.1186/s13018-019-1538-6

Knockdown of miR-660 protects nucleus pulposus cells from TNF-a-induced apoptosis by targeting serum amyloid A1
Cited by: 10
Author(s): Hao Jie Zhang, Xue Hai, Song Lin Xie, Shu Qin, Cong Zhi Liu, Zhen Guo Zhang
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.21540

GFAPδ/GFAPα ratio directs astrocytoma gene expression towards a more malignant profile
Cited by: 18
Author(s): Oscar M. J. A. Stassen, Emma J. van Bodegraven, Fabrizio Giuliani, Martina Moeton, Regina Kanski, Jacqueline A. Sluijs, Miriam E. van Strien, Willem Kamphuis, Pierre A. Robe, Elly M. Hol
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2020.01678

Identification of an Immune Signature Predicting Prognosis Risk and Lymphocyte Infiltration in Colon Cancer
Cited by: 55
Author(s): Xinyu Li, Dacheng Wen, Xiaokang Li, Yao Chen, Wei Chong, Hao Chen
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41420-018-0096-8

The role of miR-106p-5p in cervical cancer: from expression to molecular mechanism
Cited by: 17
Author(s): Yuexiong Yi, Yanyan Liu, Wanrong Wu, Kejia Wu, Wei Zhang
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2019.02863

The Cellular Transcriptome in the Maternal Circulation During Normal Pregnancy: A Longitudinal Study
Cited by: 39
Author(s): Nardhy Gómez-López, Roberto Romero, Sonia S. Hassan, Gaurav Bhatti, Stanley M. Berry, Juan Pedro Kusanovic, Percy Pacora, Adi L. Tarca
Software Mentions: 1
Published: over 6 years ago

10.1080/2162402X.2017.1414129

Interleukin 7-expressing fibroblasts promote breast cancer growth through sustenance of tumor cell stemness
Cited by: 37
Author(s): Maximilian Boesch, Lucas Onder, Hung‐Wei Cheng, Mario Novković, Urs Mörbe, Sieghart Sopper, Guenther Gastl, Wolfram Jochum, Thomas Ruhstaller, Michael Knauer, Burkhard Ludewig
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2020.613975

GM-CSF Expression and Macrophage Polarization in Joints of Undifferentiated Arthritis Patients Evolving to Rheumatoid Arthritis or Psoriatic Arthritis
Cited by: 15
Author(s): Sara Fuentelsaz-Romero, Andrea Cuervo, Lizbeth Estrada-Capetillo, Raquel Celis, Raquel García-Campos, Julio Ramírez, Sergi Sastre, Rafael Samaniego, Amaya Puig‐Kröger, Juan D. Cañete
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/7253633

Expression of Four Autophagy-Related Genes Accurately Predicts the Prognosis of Gastrointestinal Cancer in Asian Patients
Cited by: 3
Author(s): Hua Tang, Yan Liang, Shanshan Xu, Rong Xia, Jiacheng Shen, Yuxin Zhang, Xing Gong, Yang Gi Min, Di Zhang, Tai-Yun Zhao, Shoulin Wang, Yi Zhang, Chao Wang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2017.01163

Phosphoproteomics Reveals Regulatory T Cell-Mediated DEF6 Dephosphorylation That Affects Cytokine Expression in Human Conventional T Cells
Cited by: 10
Author(s): Rubin Narayan Joshi, Nadine A. Binai, Francesco Marabita, Zhenhua Sui, Amnon Altman, Albert J. R. Heck, Jesper Tegnér, Angelika Schmidt
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.21621

Pediatric brain tumor cells release exosomes with a miRNA repertoire that differs from exosomes secreted by normal cells
Cited by: 39
Author(s): Ágota Tűzesi, Teresia Kling, Anna Wenger, Taral R. Lunavat, Su Chul Jang, Bertil Rydenhag, Jan Lötvall, Steven M. Pollard, Anna Danielsson, Helena Carén
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0067057

Cystatin SN Upregulation in Patients with Seasonal Allergic Rhinitis
Cited by: 39
Author(s): Yoshimasa Imoto, Tohru Tokunaga, Yuri Matsumoto, Yuko Hamada, Manabu Ono, Tetsuji Yamada, Yatsuji Ito, Tadao Arinami, Mitsuhiro Okano, Emiko Noguchi, Shigeharu Fujieda
Software Mentions: 1
Published: about 13 years ago

10.1038/srep21681

Combined Secretomics and Transcriptomics Revealed Cancer-Derived GDF15 is Involved in Diffuse-Type Gastric Cancer Progression and Fibroblast Activation
Cited by: 23
Author(s): Takayuki Ishige, Motoi Nishimura, Mamoru Satoh, Mai Fujimoto, Masaki Fukuyo, Toshihisa Semba, Satoshi Kado, Sachio Tsuchida, Setsu Sawai, Hiroshi Matsushita, Akira Togawa, Hisahiro Matsubara, Atsushi Kaneda, Fumio Nomura
Software Mentions: 1
Published: over 10 years ago

10.1111/eva.12394

Adaptation to climate change: trade‐offs among responses to multiple stressors in an intertidal crustacean
Cited by: 52
Author(s): Morgan W. Kelly, Melissa B. DeBiasse, Vidal A. Villela, Hope L. Roberts, Colleen F. Cecola
Software Mentions: 1
Published: about 10 years ago

10.1038/srep22168

The Transcriptional Landscape of the Photosynthetic Model Cyanobacterium Synechocystis sp. PCC6803
Cited by: 34
Author(s): Miguel A. Hernández‐Prieto, T. A. Semeniuk, Joaquín Giner‐Lamia, Matthias E. Futschik
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22788

Insulin Resistance in Human iPS Cells Reduces Mitochondrial Size and Function
Cited by: 43
Author(s): Alison Burkart, Ker Sin Tan, Laura Warren, Salvatore Iovino, Katelyn J. Hughes, C. Ronald Kahn, Mary‐Elizabeth Patti
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms22158205

Identification of an IL-22-Dependent Gene Signature as a Pharmacodynamic Biomarker
Cited by: 1
Author(s): Julie Rae, Jason A. Hackney, Kevin Huang, Mary E. Keir, Ann Herman
Software Mentions: 1
Published: about 5 years ago

10.1038/srep23128

Continuous time Bayesian networks identify Prdm1 as a negative regulator of TH17 cell differentiation in humans
Cited by: 11
Author(s): Enzo Acerbi, Elena Viganò, Michael Poidinger, Alessandra Mortellaro, Teresa Zelante, Fabio Stella
Software Mentions: 1
Published: over 10 years ago

10.1007/s00109-016-1466-4

Gene expression profiling at birth characterizing the preterm infant with early onset infection
Cited by: 7
Author(s): Anne Hilgendorff, Anita Windhorst, Manuel Klein, Svetlin Tchatalbachev, Christine Windemuth-Kieselbach, Joachim Kreuder, Matthias Heckmann, Anna Gkatzoflia, Harald Ehrhardt, Josef Mysliwietz, M. Maier, Benjamin Izar, André Billion, Ludwig Gortner, Trinad Chakraborty, Hamid Hossain
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41419-021-03951-x

Global transcriptomic changes in glomerular endothelial cells in mice with podocyte depletion and glomerulosclerosis
Cited by: 2
Author(s): Jia Fu, Zhengzi Yi, Ming Cai, Yuan Wang, Weijia Zhang, Kyung Hwa Lee, John Cijiang He
Software Mentions: 1
Published: about 5 years ago

10.1038/srep24828

Prolonged sleep restriction induces changes in pathways involved in cholesterol metabolism and inflammatory responses
Cited by: 63
Author(s): Velma Aho, Hanna Ollila, Erkki Kronholm, Isabel Bondia‐Pons, Pasi Soininen, Antti J. Kangas, Mika Hilvo, Ilkka Seppälä, Johannes Kettunen, Mervi Oikonen, Emma Raitoharju, Tuulia Hyötyläinen, Mika Kähönen, Jorma Viikari, Mikko Härmä, Mikael Sallinen, Vesa M. Olkkonen, Harri Alenius, Matti Jauhiainen, Tiina Paunio, Terho Lehtimäki, Veikko Salomaa, Matej Orešič, Olli T. Raitakari, Mika Ala‐Korpela, Tarja Porkka‐Heiskanen
Software Mentions: 1
Published: over 10 years ago

10.1038/srep24980

MiR-142-3p is a RANKL-dependent inducer of cell death in osteoclasts
Cited by: 29
Author(s): Jezrom B. Fordham, Katherine Guilfoyle, Afsar Raza Naqvi, Salvador Nares
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.19743

lncRNA PVT1 and its splicing variant function as competing endogenous RNA to regulate clear cell renal cell carcinoma progression
Cited by: 56
Author(s): Tao Yang, Hui Zhou, Peijun Liu, Libin Yan, Weimin Yao, Ke Chen, Jin Zeng, Heng Li, Junhui Hu, Hua Xu, Zhangqun Ye
Software Mentions: 1
Published: about 9 years ago

10.1038/cddis.2017.49

Neuroblastoma cells depend on HDAC11 for mitotic cell cycle progression and survival
Cited by: 41
Author(s): Theresa Thole, Marco Lodrini, Johannes Fabian, Jasmin Wuenschel, Sebastian Pfeil, Thomas Hielscher, Annette Kopp‐Schneider, Ulrike Heinicke, Simone Fulda, Olaf Witt, Angelika Eggert, Matthias Fischer, Hedwig E. Deubzer
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-018-1102-z

The thiosemicarbazone Me2NNMe2 induces paraptosis by disrupting the ER thiol redox homeostasis based on protein disulfide isomerase inhibition
Cited by: 33
Author(s): Sonja Hager, Katharina Korbula, Bjoern Bielec, Michael Grusch, Christine Pirker, Markus Schosserer, Lisa Liendl, Magdalena Lang, Johannes Grillari, Karin Nowikovsky, Veronika F.S. Pape, Thomas Mohr, Gergely Szakács, Bernhard K. Keppler, Walter Berger, Christian R. Kowol, Petra Heffeter
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep26363

Transcriptome shock invokes disruption of parental expression-conserved genes in tetraploid wheat
Cited by: 19
Author(s): Huakun Zhang, Xiaowan Gou, Ai Zhang, Xutong Wang, Na Zhao, Yuzhu Dong, Linfeng Li, Liu B
Software Mentions: 1
Published: over 10 years ago

10.1038/srep26830

A neuroendocrine role for chemerin in hypothalamic remodelling and photoperiodic control of energy balance
Cited by: 44
Author(s): Gisela Helfer, Alexander Ross, Lynn Thomson, Claus Mayer, Patrick N. Stoney, Peter McCaffery, Peter J. Morgan
Software Mentions: 1
Published: about 10 years ago

10.1038/s41419-020-03029-0

LncRNA MNX1-AS1 promotes progression of intrahepatic cholangiocarcinoma through the MNX1/Hippo axis
Cited by: 20
Author(s): Fengwei Li, Qinjunjie Chen, Hui Xue, Lei Zhang, Kui Wang, Feng Shen
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0120337

MicroRNAs Are Part of the Regulatory Network that Controls EGF Induced Apoptosis, Including Elements of the JAK/STAT Pathway, in A431 Cells
Cited by: 22
Author(s): Ibrahim O. Alanazi, Peter Hoffmann, David L. Adelson
Software Mentions: 1
Published: over 11 years ago

10.1038/srep27059

Non integrative strategy decreases chromosome instability and improves endogenous pluripotency genes reactivation in porcine induced pluripotent-like stem cells
Cited by: 14
Author(s): Annabelle Congras, Harmonie Barasc, Kamila Canale-Tabet, Florence Plisson-Petit, Chantal Delcros, Olivier Féraud, Noufϊssa Oudrhiri, Éva Hadadi, Franck Griscelli, Annelise Bennaceur-Griscelli, Ali G. Turhan, Marielle Afanassieff, Stéphane Ferchaud, Alain Pinton, Martine Yerle-Bouissou, Hervé Acloque
Software Mentions: 1
Published: about 10 years ago

10.1038/srep27221

Annexin A5 is the Most Abundant Membrane-Associated Protein in Stereocilia but is Dispensable for Hair-Bundle Development and Function
Cited by: 24
Author(s): Jocelyn F. Krey, Meghan C. Drummond, Sarah Foster, Edward Porsov, Sarath Vijayakumar, Dongseok Choi, Karen H. Friderici, Sherri M. Jones, Alfred L. Nuttall, Peter G. Barr-Gillespie
Software Mentions: 1
Published: about 10 years ago

10.1128/JVI.02828-14

Analysis of the Early Immune Response to Infection by Infectious Bursal Disease Virus in Chickens Differing in Their Resistance to the Disease
Cited by: 43
Author(s): Jacqueline Smith, Jean-Rémy Sadeyen, Colin Butter, Pete Kaiser, David W. Burt
Software Mentions: 1
Published: over 11 years ago

10.18632/oncotarget.20441

Crosstalk in competing endogenous RNA network reveals the complex molecular mechanism underlying lung cancer
Cited by: 45
Author(s): Xiang Jin, Yinghui Guan, Hui Sheng, Yang Liu
Software Mentions: 1
Published: almost 9 years ago

10.1002/2211-5463.13111

Analysis of the role of Frizzled 2 in different cancer types
Cited by: 2
Author(s): Miaomiao Zhou, Xuezhu Sun, Yongwei Zhu
Software Mentions: 1
Published: over 5 years ago

10.1007/s12031-014-0368-6

Different MicroRNA Profiles in Chronic Epilepsy Versus Acute Seizure Mouse Models
Cited by: 59
Author(s): Anita Kretschmann, Bénédicte Danis, Lidija Andonovic, Khalid Abnaof, Marijke van Rikxoort, Franziska Siegel, Manuela Mazzuferi, Patrice Godard, Étienne Hanon, Holger Fröhlich, Rafał M. Kamiński, Patrik Foerch, Alexander Pfeifer
Software Mentions: 1
Published: about 12 years ago

10.1186/s13018-017-0674-0

A time-course microarray data analysis reveals consistent dysregulated genes and upstream microRNAs in autoantibody-mediated arthritis
Cited by: 1
Author(s): Xinwen Wang, Jie Bai, Zhen Jia, Yangjun Zhu, Jijun Liu, Kun Zhang, Dingjun Hao, Heng Li
Software Mentions: 1
Published: over 8 years ago

10.1038/srep29105

Microbial biotransformation of DON: molecular basis for reduced toxicity
Cited by: 117
Author(s): Alix Pierron, Sabria Mimoun, Letı́cia Sayuri Murate, Nicolas Loiseau, Yannick Lippi, Ana-Paula F. L. Bracarense, Gerd Schatzmayr, Jianlin He, Ting Zhou, Wulf-Dieter Moll, Isabelle P. Oswald
Software Mentions: 1
Published: about 10 years ago

10.15252/msb.20209628

In vitro and in vivo identification of clinically approved drugs that modify <scp>ACE</scp> 2 expression
Cited by: 42
Author(s): Sanju Sinha, Kuoyuan Cheng, Alejandro A. Schäffer, Kenneth Aldape, Eyal Schiff, Eytan Ruppin
Software Mentions: 1
Published: about 6 years ago

10.1038/s41419-019-1498-0

Comparison of human isogeneic Wharton’s jelly MSCs and iPSC-derived MSCs reveals differentiation-dependent metabolic responses to IFNG stimulation
Cited by: 12
Author(s): Liani Devito, Michail E. Klontzas, Aleksandra Čvoro, Antonio Galleu, Marisa Simon, Carl Hobbs, Francesco Dazzi, Athanasios Mantalaris, Yacoub Khalaf, Duško Ilić
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0025708

Effects of Hormone Agonists on Sf9 Cells, Proliferation and Cell Cycle Arrest
Cited by: 19
Author(s): Maeva Giraudo, Jérôme Califano, Frédérique Hilliou, Trang Tran, Nathalie Taquet, René Feyereisen, Gaëlle Le Goff
Software Mentions: 1
Published: almost 15 years ago

10.1038/s41419-018-0450-z

miR-381-3p knockdown improves intestinal epithelial proliferation and barrier function after intestinal ischemia/reperfusion injury by targeting nurr1
Cited by: 45
Author(s): Liwei Liu, Jihong Yao, Zhenlu Li, Guo Zu, Decheng Feng, Li Yang, W Qasim, Su Zhang, Tong Li, Huizhi Zeng, Xiaofeng Tian
Software Mentions: 1
Published: over 8 years ago

10.1242/dmm.022277

Urine-sample-derived human induced pluripotent stem cells as a model to study PCSK9-mediated autosomal dominant hypercholesterolemia
Cited by: 30
Author(s): Karim Si‐Tayeb, Salam Idriss, Benoite Champon, Amandine Caillaud, Matthieu Pichelin, Lucie Arnaud, Patricia Lemarchand, Cédric Le May, Kazem Zibara, Bertrand Cariou
Software Mentions: 1
Published: over 11 years ago

10.18632/oncotarget.21929

Proteome profiling of clear cell renal cell carcinoma in von Hippel-Lindau patients highlights upregulation of Xaa-Pro aminopeptidase-1, an anti-proliferative and anti-migratory exoprotease
Cited by: 13
Author(s): Vanessa Drendel, Bianca Heckelmann, Chia-Yi Chen, Juliane Weißer, Guadalupe Espadas, Christoph Schell, Eduard Sabidò, Martin Werner, Cordula A. Jilg, Oliver Schilling
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.67624

Genome-wide CRISPRi screening identifies OCIAD1 as a prohibitin client and regulatory determinant of mitochondrial Complex III assembly in human cells
Cited by: 15
Author(s): Maxence Le Vasseur, Jonathan R. Friedman, Marco Jost, Jiawei Xu, Justin Yamada, Martin Kampmann, Max A. Horlbeck, Michelle Salemi, Brett S. Phinney, Jonathan S. Weissman, Jodi Nunnari
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.16432

Interferon alpha-inducible protein 6 regulates NRASQ61K-induced melanomagenesis and growth
Cited by: 21
Author(s): Romi Gupta, Matteo Forloni, Malik Bisserier, Shaillay Kumar Dogra, Qinghua Yang, Narendra Wajapeyee
Software Mentions: 1
Published: almost 10 years ago

10.1038/cddis.2017.544

miR-99a reveals two novel oncogenic proteins E2F2 and EMR2 and represses stemness in lung cancer
Cited by: 68
Author(s): Andrea Feliciano, Yoelsis García-Mayea, Luz Jubierre, Cristina Mir, Manuela Hummel, Josep Castellví, Javier Hernández‐Losa, Rosanna Paciucci, Irene Sansano, Yaxin Sun, Santiago Ramón y Cajal, Hiroshi Kondon, Aroa Soriano, Miguel F. Segura, Alex Lyakhovich, Matilde E. Lleonart
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep31716

A new avenue for obtaining insight into the functional characteristics of long noncoding RNAs associated with estrogen receptor signaling
Cited by: 10
Author(s): Liangcai Wu, Qianqian Xu, Haohai Zhang, Ming Li, Chun Zhu, Mier Jiang, Xinting Sang, Yi Zhao, Qiang Sun, Haitao Zhao
Software Mentions: 1
Published: about 10 years ago

10.3389/fcvm.2021.690846

Downregulation of Filamin a Expression in the Aorta Is Correlated With Aortic Dissection
Cited by: 13
Author(s): Yue Chen, Xiang Wei, Zihao Zhang, Yi He, Bo Huo, Xiaorong Guo, Feng Xiao, Zemin Fang, Ding‐Sheng Jiang, Xiashi Zhu
Software Mentions: 1
Published: about 5 years ago

10.1038/s41419-018-1096-6

Integrative analysis of transcriptomics and clinical data uncovers the tumor-suppressive activity of MITF in prostate cancer
Cited by: 12
Author(s): Lorea Valcárcel-Jiménez, Alice Macchia, Natalia Martín-Martín, Ana R. Cortazar, Ariane Schaub-Clerigué, Mikel Pujana-Vaquerizo, Sonia Fernández-Ruiz, Isabel Lacasa-Viscasillas, Aida Santos-Martin, Ana Loizaga-Iriarte, Miguel Unda, Ivana Heřmanová, Ianire Astobiza, Mariona Graupera, Júlia Starková, James D. Sutherland, Rosa Barrio, Ana M. Aransay, Arkaitz Carracedo, Verónica Torrano
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep33414

Visible-absorption spectroscopy as a biomarker to predict treatment response and prognosis of surgically resected esophageal cancer
Cited by: 7
Author(s): Pei-Wen Yang, I-Jen Hsu, Chun‐Wei Chang, Yu-Chia Wang, Cheng‐Chih Hsieh, Kuan-Hui Shih, Luchin Wong, Nai-Yu Shih, Min‐Shu Hsieh, Max Ti-Kuang Hou, Jang-Ming Lee
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep33366

THBS2 is a Potential Prognostic Biomarker in Colorectal Cancer
Cited by: 59
Author(s): Xue Wang, Lei Zhang, Hui Li, Wenjie Sun, Honghe Zhang, Maode Lai
Software Mentions: 1
Published: almost 10 years ago

10.1038/cddis.2016.180

AKT activation controls cell survival in response to HDAC6 inhibition
Cited by: 21
Author(s): Maciej Kaliszczak, Sebastian Trousil, Taqdir Ali, Eric O. Aboagye
Software Mentions: 1
Published: about 10 years ago

10.1242/dev.168161

Transcriptionally dynamic progenitor populations organised around a stable niche drive axial patterning
Cited by: 43
Author(s): Filip J. Wymeersch, Stavroula Skylaki, Yali Huang, Julia A. Watson, Constantinos Economou, Carylyn Marek-Johnston, Simon R. Tomlinson, Valerie Wilson
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-020-2532-y

The circular RNA circMAST1 promotes hepatocellular carcinoma cell proliferation and migration by sponging miR-1299 and regulating CTNND1 expression
Cited by: 26
Author(s): Xuezhong Yu, Ping Sheng, Jing Sun, Xijuang Zhao, Junting Zhang, Yiying Li, YiMeng Zhang, Wenxiu Zhang, Jianqi Wang, Kunpeng Liu, Daling Zhu, Hongchi Jiang
Software Mentions: 1
Published: over 6 years ago

10.1038/srep35203

Midbrain Gene Screening Identifies a New Mesoaccumbal Glutamatergic Pathway and a Marker for Dopamine Cells Neuroprotected in Parkinson’s Disease
Cited by: 40
Author(s): Thomas Viereckel, Sylvie Dumas, Casey J. A. Smith-Anttila, Bianca Vlcek, Zisis Bimpisidis, Malin C. Lagerström, Åsa Konradsson-Geuken, Åsa Wallén-Mackenzie
Software Mentions: 1
Published: almost 10 years ago

10.1242/dev.136465

RBOH-mediated ROS production facilitates lateral root emergence in Arabidopsis
Cited by: 134
Author(s): Beata Orman-Ligeza, Boris Parizot, Riet De Rycke, Ana Fernandez, Ellie Himschoot, Frank Van Breusegem, Malcolm J. Bennett, Claire Périlleux, Tom Beeckman, Xavier Draye
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.21132

Characterization of epithelial-mesenchymal transition intermediate/hybrid phenotypes associated to resistance to EGFR inhibitors in non-small cell lung cancer cell lines
Cited by: 41
Author(s): Valentina Fustaino, Dario Presutti, Teresa Colombo, Beatrice Cardinali, Giuliana Papoff, Rossella Brandi, Paola Bertolazzi, G. Felici, Giovina Ruberti
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep36766

MicroRNA mir-34 provides robustness to environmental stress response via the DAF-16 network in C. elegans
Cited by: 39
Author(s): Meltem Isik, T. Keith Blackwell, Eugène Berezikov
Software Mentions: 1
Published: over 9 years ago

10.1038/srep37842

Cellular reactions to long-term volatile organic compound (VOC) exposures
Cited by: 21
Author(s): Johanna M. Gostner, Johannes Zeisler, Mohammad Tauqeer Alam, Peter J. Gruber, Dietmar Fuchs, Kathrin Becker, Kerstin Neubert, M. Kleinhappl, Stefan Martini, Florian Überall
Software Mentions: 1
Published: over 9 years ago

10.1038/srep38262

Blood hsa-miR-122-5p and hsa-miR-885-5p levels associate with fatty liver and related lipoprotein metabolism—The Young Finns Study
Cited by: 60
Author(s): Emma Raitoharju, Ilkka Seppälä, Leo-Pekka Lyytikäinen, Jorma Viikari, Mika Ala‐Korpela, Pasi Soininen, Antti J. Kangas, Mélanie Waldenberger, Norman Klopp, Thomas Illig, Jaana Leiviskä, Britt-Marie Loo, Niku Oksala, Mika Kähönen, Nina Hutri‐Kähönen, Reijo Laaksonen, Olli T. Raitakari, Terho Lehtimäki
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.15316

Enhancer regions show high histone H3.3 turnover that changes during differentiation
Cited by: 84
Author(s): Aimée M. Deaton, Mariluz Gómez-Rodríguez, Jakub Mieczkowski, Michael Y. Tolstorukov, Sharmistha Kundu, Ruslan I. Sadreyev, Lars Jansen, Robert E. Kingston
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.26435

Ubiquilin1 promotes antigen-receptor mediated proliferation by eliminating mislocalized mitochondrial proteins
Cited by: 34
Author(s): Alexandra M Whiteley, Miguel A. Prado, Ivan Peng, Alexander R. Abbas, Benjamin Haley, João A. Paulo, Mike Reichelt, Anand Kumar Katakam, Meredith Sagolla, Zora Modrušan, Dong Yun Lee, Merone Roose‐Girma, Donald S. Kirkpatrick, Brent McKenzie, Steven P. Gygi, Daniel Finley, Eric J. Brown
Software Mentions: 1
Published: almost 9 years ago

10.3389/fcell.2021.628573

Extracellular Vesicles Carry lncRNA SNHG16 to Promote Metastasis of Breast Cancer Cells via the miR-892b/PPAPDC1A Axis
Cited by: 17
Author(s): Wei Xia, Yun Liu, Teng Cheng, Tao Xu, Menglu Dong, Xiaosong Hu
Software Mentions: 1
Published: about 5 years ago

10.1242/dmm.029678

Pumilio2 deficient mice show a predisposition for epilepsy
Cited by: 39
Author(s): Philipp Follwaczny, Rico Schieweck, Therese Riedemann, Antonia Demleitner, Tobias Straub, Anna H. Klemm, Martin Bilban, Bernd Sutor, Bastian Popper, Michael Kiebler
Software Mentions: 1
Published: over 9 years ago

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Papers Mentioning limma 7,776