bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-69164-y

Systemic lipid dysregulation is a risk factor for macular neurodegenerative disease
Cited by: 23
Author(s): Roberto Bonelli, Sasha M Woods, Brendan R E Ansell, Tjebo Heeren, Catherine Egan, Kamron Khan, Robyn H. Guymer, Jennifer Trombley, Martin Friedlander, Melanie Bahlo, Marcus Fruttiger
Software Mentions: 1
Published: over 4 years ago

10.3389/pore.2021.609620

Wnt3a/β-Catenin/CBP Activation in the Progression of Cervical Intraepithelial Neoplasia
Cited by: 1
Author(s): Dingqing Feng, Jie Lin, Wenhui Wang, Keqin Yan, Huaping Liang, Jing Liang, Huan Yu, Bin Ling
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-68988-y

Modulating electrophysiology of motor neural networks via optogenetic stimulation during neurogenesis and synaptogenesis
Cited by: 7
Author(s): Gelson J. Pagan‐Diaz, Jenny Drnevich, Karla P. Ramos-Cruz, Richard Sam, Parijat Sengupta, Rashid Bashir
Software Mentions: 1
Published: over 4 years ago

10.3389/pore.2021.596899

Identification of DNA-Repair-Related Five-Gene Signature to Predict Prognosis in Patients with Esophageal Cancer
Cited by: 7
Author(s): Lin Wang, Xueping Li, Liang Zhao, Longyang Jiang, Xinyue Song, Aoshuang Qi, Ting Chen, Mingyi Ju, Baohui Hu, Minjie Wei, Miao He, Lin Zhao
Software Mentions: 1
Published: over 3 years ago

10.3389/pore.2021.581542

Tumor Inhibitory Effect of Long Non-coding RNA LOC100505817 on Gastric Cancer
Cited by: 1
Author(s): Lei Zheng, Liying Kang, Yan Cheng, Jun-Li Cao, Lijie Liu, Hongmei Xu, Lian Gao
Software Mentions: 1
Published: over 3 years ago

10.1186/1752-0509-2-101

Genetic and systems level analysis of Drosophila sticky/citron kinase and dFmr1 mutants reveals common regulation of genetic networks
Cited by: 9
Author(s): Christopher R. Bauer, Andrew Michael Epstein, Sarah Sweeney, Daniela C. Zarnescu, Giovanni Bosco
Software Mentions: 1
Published: almost 16 years ago

10.3390/pathogens9010069

Staphylococcus saprophyticus Proteomic Analyses Elucidate Differences in the Protein Repertories among Clinical Strains Related to Virulence and Persistence
Cited by: 6
Author(s): Karla Christina Sousa Silva, Lana O’Hara Souza Silva, Guilherme Algusto Alves Silva, Clayton Luiz Borges, Evandro Novaes, Juliano D. Paccez, Wagner Fontes, Márcia Giambiagi-deMarval, Célia Maria de Almeida Soares, Juliana Alves Parente-Rocha
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12989-016-0160-6

Copper oxide nanoparticle toxicity profiling using untargeted metabolomics
Cited by: 54
Author(s): Matthew Boyles, Christina Ranninger, Roland Reischl, Marc Rurik, Richard Tessadri, Oliver Kohlbacher, Albert Duschl, Christian G. Huber
Software Mentions: 1
Published: almost 9 years ago

10.1155/2018/1590465

Microarray Analysis of the Molecular Mechanism Involved in Parkinson’s Disease
Cited by: 13
Author(s): Cheng Tan, Xiaoyang Liu, Jiajun Chen
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12920-020-0690-5

Amniotic fluid cell-free transcriptome: a glimpse into fetal development and placental cellular dynamics during normal pregnancy
Cited by: 24
Author(s): Adi L. Tarca, Roberto Romero, Roger Piqué-Regi, Percy Pacora, Bogdan Done, Marian Kacerovský, Gaurav Bhatti, Sunil Jaiman, Sonia S. Hassan, Chaur‐Dong Hsu, Nardhy Gómez-López
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13071-019-3672-8

Differential gene expression, including Sjfs800, in Schistosoma japonicum females at pre-pairing, initial pairing and oviposition
Cited by: 5
Author(s): Fengchun Liu, Han‐Fei Ding, Jiaming Tian, Congyu Zhou, Fei Yang, Wei Shao, Yinan Du, Xin Hou, Chao Ren, Jijia Shen
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-015-0844-z

Profiling of differentially expressed genes in sheep T lymphocytes response to an artificial primary Haemonchus contortus infection
Cited by: 9
Author(s): Yi Yang, Qianjin Zhou, Xue-Qiu Chen, Bowen Yan, Xing Guo, Hongli Zhang, Aifang Du
Software Mentions: 1
Published: over 9 years ago

10.1186/s13071-018-2822-8

The mosquito adulticidal Chromobacterium sp. Panama causes transgenerational impacts on fitness parameters and elicits xenobiotic gene responses
Cited by: 9
Author(s): Sarah M. Short, Sarah van Tol, Barry D. Smith, Yuemei Dong, George Dimopoulos
Software Mentions: 1
Published: over 6 years ago

10.7150/ijms.47339

Integrated bioinformatics analysis for differentially expressed genes and signaling pathways identification in gastric cancer
Cited by: 3
Author(s): Chengli Yang, Aifeng Gong
Software Mentions: 1
Published: almost 4 years ago

10.1097/j.pain.0000000000002033

Sex-dependent role of microglia in disulfide high mobility group box 1 protein-mediated mechanical hypersensitivity
Cited by: 32
Author(s): Nilesh M. Agalave, Resti Rudjito, Alex Bersellini Farinotti, Payam Emami Khoonsari, Katalin Sándor, Yuki Nomura, Thomas A. Szabo-Pardi, Carlos Morado Urbina, Vinko Palada, Theodore J. Price, Helena Erlandsson Harris, Michael D. Burton, Kim Kultima, Camilla I. Svensson
Software Mentions: 1
Published: over 4 years ago

10.1186/s12957-021-02335-x

Identification and verification of HCAR3 and INSL5 as new potential therapeutic targets of colorectal cancer
Cited by: 16
Author(s): Xuan Yang, Wangao Wei, Shuxin Tan, Lina Guo, Songlin Qiao, Biao Yao, Zi Wang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12957-021-02360-w

Identification of latent biomarkers in connection with progression and prognosis in oral cancer by comprehensive bioinformatics analysis
Cited by: 12
Author(s): Abdusemer Reyimu, Ying Chen, Xudong Song, Wubi Zhou, Jingjing Dai, Feng Jiang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12957-021-02329-9

A novel prognostic model based on epithelial-mesenchymal transition-related genes predicts patient survival in gastric cancer
Cited by: 8
Author(s): Wanting Song, Yi Bai, Jia‐Lin Zhu, Fanxin Zeng, Chunmeng Yang, Beibei Hu, Mingjun Sun, Chenyan Li, Siyun Peng, Moye Chen, Xiaodi Sun
Software Mentions: 1
Published: over 3 years ago

10.1186/s12957-016-0997-z

Microarray data analysis to identify crucial genes regulated by CEBPB in human SNB19 glioma cells
Cited by: 14
Author(s): Chenghua Du, Pan Pan, Yan Jiang, Qiuli Zhang, Jinsuo Bao, Chang Liu
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2202-13-126

High throughput analysis reveals dissociable gene expression profiles in two independent neural systems involved in the regulation of social behavior
Cited by: 22
Author(s): Tyler J. Stevenson, Kirstin Replogle, Jenny Drnevich, David F. Clayton, Gregory F. Ball
Software Mentions: 1
Published: about 12 years ago

10.1186/1477-7819-10-264

MSH2 and CXCR4 involvement in malignant VIPoma
Cited by: 11
Author(s): Sven Müller, Susan Kupka, Ingmar Königsrainer, Hinnak Northoff, Karl Sotlar, C.‐Thomas Bock, Reinhard Kandolf, Frank Traub, Alfred Königsrainer, Derek Zieker
Software Mentions: 1
Published: almost 12 years ago

10.12688/wellcomeopenres.15405.2

Functional and proteomic analysis of a full thickness filaggrin-deficient skin organoid model
Cited by: 11
Author(s): Martina S. Elias, S. Wright, William V. Nicholson, Kimberley Morrison, Alan R. Prescott, Sara ten Have, Phillip D. Whitfield, Angus I. Lamond, Sara J. Brown
Software Mentions: 1
Published: almost 5 years ago

10.3390/v13061018

COVID-19 Severity Potentially Modulated by Cardiovascular-Disease-Associated Immune Dysregulation
Cited by: 6
Author(s): Abby C Lee, Grant Castaneda, Wei Tse Li, Chengyu Chen, Neil Shende, Jaideep Chakladar, Pam R. Taub, Eric Y. Chang, Weg M. Ongkeko
Software Mentions: 1
Published: over 3 years ago

10.7150/ijms.45813

A Prognostic Model Based on the Immune-related Genes in Colon Adenocarcinoma
Cited by: 21
Author(s): Yuanlin Sun, Yang Zhang, Yuchen Guo, Zihao Yang, You Xu
Software Mentions: 1
Published: almost 5 years ago

10.3892/ijmm.2014.1668

Identification of differentially expressed microRNAs in metastatic melanoma using next-generation sequencing technology
Cited by: 19
Author(s): Min Qi, Xiaoyuan Huang, Lei Zhou, Jianglin Zhang
Software Mentions: 1
Published: over 10 years ago

10.1038/ijo.2017.224

A history of obesity leaves an inflammatory fingerprint in liver and adipose tissue
Cited by: 48
Author(s): Ingrid P. Fischer, Martin Irmler, Christian Meyer, Stephan Sachs, Frauke Neff, Martin Hrabé de Angelis, Johannes Beckers, Matthias H. Tschöp, Susanna M. Hofmann, Siegfried Ussar
Software Mentions: 1
Published: about 7 years ago

10.3390/microarrays5020010

Stromal Activation by Tumor Cells: An in Vitro Study in Breast Cancer
Cited by: 5
Author(s): Giuseppe Merlino, Patrizia Miodini, Biagio Paolini, Maria Luisa Carcangiu, Massimiliano Gennaro, Matteo Dugo, Maria Grazia Daidone, Vera Cappelletti
Software Mentions: 1
Published: over 8 years ago

10.1155/2021/6402206

Autophagy-Related Genes in Atherosclerosis
Cited by: 4
Author(s): Yuankun Chen, Ao Zeng, Shumiao He, Siqing He, Chunmei Li, Wenjie Mei, Qun Lu
Software Mentions: 1
Published: over 3 years ago

10.1186/s13104-018-4020-3

Transcriptomes of microglia in experimental cerebral malaria in mice in the presence and absence of Type I Interferon signaling
Cited by: 5
Author(s): Carlos Talavera-López, Barbara Capuccini, Richard Mitter, Jing-wen Lin, Jean Langhorne
Software Mentions: 1
Published: almost 6 years ago

10.3390/microarrays3040263

Expression Comparison of Oil Biosynthesis Genes in Oil Palm Mesocarp Tissue Using Custom Array
Cited by: 12
Author(s): Yick Ching Wong, Qi Bin Kwong, Heng Leng Lee, Chuang Kee Ong, Sean Mayes, Fook Tim Chew, David R. Appleton, Harikrishna Kulaveerasingam
Software Mentions: 1
Published: about 10 years ago

10.1186/s13045-016-0273-2

iPSC-derived mesenchymal stromal cells are less supportive than primary MSCs for co-culture of hematopoietic progenitor cells
Cited by: 8
Author(s): Theresa Vasko, Joana Frobel, Richard K. Lubberich, Tamme W. Goecke, Wolfgang Wagner
Software Mentions: 1
Published: over 8 years ago

10.1007/s11306-016-1084-8

Integration of targeted metabolomics and transcriptomics identifies deregulation of phosphatidylcholine metabolism in Huntington’s disease peripheral blood samples
Cited by: 40
Author(s): Anastasios Mastrokolias, René Pool, Eleni Mina, Kristina Hettne, Erik van Duijn, Roos C. van der Mast, Gert-Jan van Ommen, Peter A.C. ’t Hoen, Cornelia Prehn, Jerzy Adamski, Willeke van Roon-Mom
Software Mentions: 1
Published: over 8 years ago

10.3390/metabo11080481

Autophagy Deficiency by Atg4B Loss Leads to Metabolomic Alterations in Mice
Cited by: 4
Author(s): Gemma G. Martínez-García, Raúl Fernández Pérez, Álvaro F. Fernández, Sylvère Durand, Guido Kroemer, Guillermo Mariño
Software Mentions: 1
Published: over 3 years ago

10.1186/s13045-017-0531-y

The stem cell factor SALL4 is an essential transcriptional regulator in mixed lineage leukemia-rearranged leukemogenesis
Cited by: 28
Author(s): Lina Yang, Li Liu, Hong Gao, Jaya Pratap Pinnamaneni, Deepthi Sanagasetti, Vivek P. Singh, Kai Wang, Megumi Mathison, Qianzi Zhang, Ken Chen, Qianxing Mo, Todd K. Rosengart, Jianchang Yang
Software Mentions: 1
Published: about 7 years ago

10.1186/s13045-018-0561-0

Artesunate shows potent anti-tumor activity in B-cell lymphoma
Cited by: 64
Author(s): Thea Kristin Våtsveen, Marit Renée Myhre, Chloé B. Steen, Sébastien Wälchli, Ole Christian Lingjærde, Baoyan Bai, Pierre Dillard, Theodossis A. Theodossiou, Toril Holien, Anders Sundan, Else Marit Inderberg, Erlend B. Smeland, June Helen Myklebust, Morten P. Oksvold
Software Mentions: 1
Published: almost 7 years ago

10.3390/metabo10070268

Metabolic Signatures of Tumor Responses to Doxorubicin Elucidated by Metabolic Profiling in Ovo
Cited by: 17
Author(s): Iman W Achkar, Sara Abdul Kader, Shaima S. Dib, Kulsoom Junejo, Salha Bujassoum Al‐Bader, Shahina Hayat, Aditya Bhagwat, Xavier Rousset, Yan Wang, Jean Viallet, Karsten Suhre, Anna Halama
Software Mentions: 1
Published: over 4 years ago

10.1186/s13045-018-0694-1

Identifying and targeting cancer stem cells in leiomyosarcoma: prognostic impact and role to overcome secondary resistance to PI3K/mTOR inhibition
Cited by: 9
Author(s): Benjamin Fourneaux, Aurélien Bourdon, Bérengère Dadone, Carlo Lucchesi, Scott R. Daigle, Élodie Richard, Audrey Laroche-Clary, François Le Loarer, Antoîne Italiano
Software Mentions: 1
Published: almost 6 years ago

10.3390/metabo11040195

Metabolic Signature of Arrhythmogenic Cardiomyopathy
Cited by: 5
Author(s): Chiara Volani, Johannes Michael Rainer, Vinicius Veri Hernandes, Viviana Meraviglia, Peter P. Pramstaller, Sigurdur Smarason, Giulio Pompilio, Michela Casella, Elena Sommariva, Giuseppe Paglia, Alessandra Rossini
Software Mentions: 1
Published: over 3 years ago

10.3390/membranes11090674

Bioinformatic Analysis of ABCA1 Gene Expression in Smoking and Chronic Obstructive Pulmonary Disease
Cited by: 4
Author(s): Stanislav Kotlyarov, Anna Kotlyarova
Software Mentions: 1
Published: about 3 years ago

10.1007/s12032-021-01470-5

Identification BCL6 and miR-30 family associating with Ibrutinib resistance in activated B-cell-like diffuse large B-cell lymphoma
Cited by: 5
Author(s): Jiazheng Li, Yan Huang, Yun Zhang, Junping Wen, Yanxin Chen, Lingyan Wang, Peifang Jiang, Jianda Hu
Software Mentions: 1
Published: over 3 years ago

10.1186/s13104-020-05121-2

Physical activity and blood gene expression profiles: the Norwegian Women and Cancer (NOWAC) Post-genome cohort
Cited by: 1
Author(s): Karina Standahl Olsen, Marko Lukic, Kristin Benjaminsen Borch
Software Mentions: 1
Published: over 4 years ago

10.1097/MD.0000000000027058

Exploration of immune-related cells and ceRNA in squamous cell lung cancer
Cited by: 0
Author(s): Lijun Wang, Hao Wang, Ke Xu, Yehong Xu, Yong Wang, Wei Song, Zhihong Zhang
Software Mentions: 1
Published: about 3 years ago

10.1155/2018/7342472

Integration of Genome-Wide DNA Methylation and Transcription Uncovered Aberrant Methylation-Regulated Genes and Pathways in the Peripheral Blood Mononuclear Cells of Systemic Sclerosis
Cited by: 19
Author(s): Honglin Zhu, Chengsong Zhu, Wentao Mi, Tao Chen, Hongjun Zhao, Xiaoxia Zuo, Hui Luo, Quan Zhen Li
Software Mentions: 1
Published: about 6 years ago

10.1007/s10637-020-00952-z

Integrative analysis of key candidate genes and signaling pathways in autoimmune thyroid dysfunction related to anti-CTLA-4 therapy by bioinformatics
Cited by: 1
Author(s): Ying Zhang, Francesca Garofano, Xiaolong Wu, Matthias Schmid, Peter Krawitz, Markus Essler, Ingo G. H. Schmidt‐Wolf
Software Mentions: 1
Published: over 4 years ago

10.1186/s12866-019-1684-3

Temporal analysis of mRNA expression profiles in Orientia infected C3HeB/FeJ mouse
Cited by: 3
Author(s): Chien‐Chung Chao, Ruoting Yang, Zhiwen Zhang, Tatyana Belinskaya, Chye-Teik Chan, Stacy‐Ann Miller, Rasha Hammamieh, Marti Jett, Wei‐Mei Ching
Software Mentions: 1
Published: almost 5 years ago

10.22037/ijpr.2020.113442.14305

Identification of Candidate Biomarkers for Idiopathic Thrombocytopenic Purpura by Bioinformatics Analysis of Microarray Data.
Cited by: 0
Author(s): Samira Gilanchi, Hakimeh Zali, Mohammad Faranoush, Mostafa Rezaei Tavirani, Keyvan Shahriary, Mahyar Daskareh
Software Mentions: 1
Published: almost 5 years ago

10.1080/19382014.2016.1182276

Insights into islet development and biology through characterization of a human iPSC-derived endocrine pancreas model
Cited by: 19
Author(s): Martijn van de Bunt, Majlinda Lako, Amy Barrett, Anna L. Gloyn, Mattias Hansson, Mark I. McCarthy, Nicola L. Beer, Christian Honoré
Software Mentions: 1
Published: over 8 years ago

10.1186/s13052-018-0575-9

Genomics of neonatal sepsis: has-miR-150 targeting BCL11B functions in disease progression
Cited by: 17
Author(s): Li Huang, Lixing Qiao, Huan Zhu, Li Jiang, Yin Li
Software Mentions: 1
Published: almost 6 years ago

10.1097/MD.0000000000018815

Expression of SREBP2 and cholesterol metabolism related genes in TCGA glioma cohorts
Cited by: 6
Author(s): Dali Li, Shenglan Li, Allen Z Xue, Laura A. Smith Callahan, Ying Liu
Software Mentions: 1
Published: over 4 years ago

10.1097/MD.0000000000014074

Identification of key regulators of pancreatic ductal adenocarcinoma using bioinformatics analysis of microarray data
Cited by: 5
Author(s): Nan Li, Xin Zhao, Shengyi You
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13104-019-4410-1

Unique microglia expression profile in developing white matter
Cited by: 20
Author(s): Ori Staszewski, Nora Hagemeyer
Software Mentions: 1
Published: over 5 years ago

10.3390/medicina55090564

Biomarker Potential of Plasma MicroRNA-150-5p in Prostate Cancer
Cited by: 19
Author(s): Ionuț Andrei Păunescu, Răzvan Bardan, Anca Marcu, Diana Nițușcă, Alis Dema, Șerban Negru, Ovidiu Bălăcescu, Loredana Bălăcescu, A. Cumpanas, Ioan Ovidiu Sîrbu, Bogdan Petruţ, Edward Șeclăman, Cătălin Marian
Software Mentions: 1
Published: about 5 years ago

10.1002/jsp2.1146

Transcriptional profiling of intervertebral disc in a post‐traumatic early degeneration organ culture model
Cited by: 4
Author(s): Shangbin Cui, Zhiyu Zhou, Xu Chen, Fuxin Wei, R. Geoff Richards, Mauro Alini, Sibylle Grad, Zhen Li
Software Mentions: 1
Published: over 3 years ago

10.1186/s12883-019-1509-x

Low free triiodothyronineis predicts worsen neurological outcome of patients with acute ischemic stroke: a retrospective study with bioinformatics analysis
Cited by: 12
Author(s): Shanchao Zhang, Xia Zhao, Shan Xu, Jing Yuan, Zhihua Si, Yang Yang, Shan Qiao, Xuxu Xu, Aihua Wang
Software Mentions: 1
Published: about 5 years ago

10.1155/2015/737310

Role of Calprotectin as a Modulator of the IL27-Mediated Proinflammatory Effect on Endothelial Cells
Cited by: 12
Author(s): Susann Antonia Dorosz, Aurélien Ginolhac, Thilo Kähne, Michael Naumann, Thomas Sauter, Alexandre Salsmann, Jean-Luc Bueb
Software Mentions: 1
Published: almost 10 years ago

10.1186/s40425-019-0641-x

Oncolytic Maraba virus armed with tumor antigen boosts vaccine priming and reveals diverse therapeutic response patterns when combined with checkpoint blockade in ovarian cancer
Cited by: 38
Author(s): AJ Robert McGray, Ruea-Yea Huang, Sebastiano Battaglia, Cheryl Eppolito, Anthony Miliotto, Kyle B. Stephenson, Amit A. Lugade, Gill Webster, Brian D. Lichty, Mukund Seshadri, Danuta Kozbor, Kunle Odunsi
Software Mentions: 1
Published: over 5 years ago

10.1155/2013/437123

Stimulation of MMP-1 and CCL2 by NAMPT in PDL Cells
Cited by: 33
Author(s): Marjan Nokhbehsaim, Sigrun Eick, Andressa Vilas Boas Nogueira, Per Hoffmann, Stefan Herms, Holger Fröhlich, Søren Jepsen, Andreas Jäger, Joni Augusto Cirelli, James Deschner
Software Mentions: 1
Published: almost 12 years ago

10.1016/j.mad.2019.111177

Ageing-associated changes in the expression of lncRNAs in human tissues reflect a transcriptional modulation in ageing pathways
Cited by: 23
Author(s): Saara Marttila, Kasit Chatsirisupachai, Daniel H. Palmer, João Pedro de Magalhães
Software Mentions: 1
Published: almost 5 years ago

10.3390/md19020052

Marine Seagrass Extract of Thalassia testudinum Suppresses Colorectal Tumor Growth, Motility and Angiogenesis by Autophagic Stress and Immunogenic Cell Death Pathways
Cited by: 11
Author(s): Ivones Hernández-Balmaseda, Idania Rodeiro Guerra, Ken Declerck, José Alfredo Herrera Isidrón, Claudina Pérez-Novo, Guy Van Camp, Olivier De Wever, Kethia González, Mayrel Labrada, Adriana Carr, Geovanni Dantas-Cassali, Diego Carlos dos Reis, Liván Delgado-Roche, Roberto Rafael Nuñez, René Delgado Hernández, Miguel D. Fernández, Miriam T. Paz-Lopes, Wim Vanden Berghe
Software Mentions: 1
Published: almost 4 years ago

10.1007/s00335-018-9750-y

Of mice and men: the host response to influenza virus infection
Cited by: 16
Author(s): Heike Kollmus, Carolin Pilzner, Sarah R. Leist, Mark T. Heise, Robert Geffers, Klaus Schughart
Software Mentions: 1
Published: over 6 years ago

10.1186/s12936-017-2099-y

Malaria vectors in the Democratic Republic of the Congo: the mechanisms that confer insecticide resistance in Anopheles gambiae and Anopheles funestus
Cited by: 36
Author(s): Luisa Nardini, Richard H. Hunt, Yael Dahan-Moss, Nanette Christie, Riann Christian, Maureen Coetzee, Lizette L. Koekemoer
Software Mentions: 1
Published: about 7 years ago

10.1155/2018/6451298

LCK as a Potential Therapeutic Target for Acute Rejection after Kidney Transplantation: A Bioinformatics Clue
Cited by: 6
Author(s): Linpei Jia, Rufu Jia, Yinping Li, Xiaoxia Li, Qiang Jia, Hong‐Liang Zhang
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/6661625

Identification of Immune-Related Prognostic Biomarkers Associated with HPV-Positive Head and Neck Squamous Cell Carcinoma
Cited by: 6
Author(s): Yifei Chen, Jin Nie, Xiangsheng Li, Tao Fan, Xiaowen Deng, Dan Liang, Gui‐Lin Song
Software Mentions: 1
Published: almost 4 years ago

10.1186/1476-511X-12-126

The effect of simvastatin on lipid droplets accumulation in human embryonic kidney cells and pancreatic cancer cells
Cited by: 27
Author(s): Helena Gbelcová, Martin Švéda, Lucia Laubertová, Ivan Varga, Libor Vı́tek, Michal Kolář, Hynek Strnad, Jaroslav Zelenka, Daniel Böhmer, Tomáš Ruml
Software Mentions: 1
Published: over 11 years ago

10.1155/2015/952184

Electroporated Antigen-Encoding mRNA Is Not a Danger Signal to Human Mature Monocyte-Derived Dendritic Cells
Cited by: 6
Author(s): Stefanie Hoyer, Kerstin F. Gerer, Isabell A. Pfeiffer, Sabrina Prommersberger, Sandra Höfflin, Tanushree Jaitly, Luca Beltrame, Duccio Cavalieri, Gerold Schuler, Julio Vera, Niels Schaft, Jan Dörrie
Software Mentions: 1
Published: almost 10 years ago

10.1186/1756-0500-6-428

Parallel deep transcriptome and proteome analysis of zebrafish larvae
Cited by: 15
Author(s): Magnus Palmblad, Christiaan V. Henkel, Ron P. Dirks, Annemarie H. Meijer, André M. Deelder, Herman P. Spaink
Software Mentions: 1
Published: about 11 years ago

10.1186/s12882-021-02356-4

Comprehensive analysis of IgA nephropathy expression profiles: identification of potential biomarkers and therapeutic agents
Cited by: 9
Author(s): Alieh Gholaminejad, Yousof Gheisari, Seyed Amir Jalali, Amir Roointan
Software Mentions: 1
Published: over 3 years ago

10.1186/s12944-019-1131-3

Potential molecular mechanism of ACE gene at different time points in STEMI patients based on genome-wide microarray dataset
Cited by: 3
Author(s): Yao-Zong Guan, Rui-Xing Yin, Peng-Fei Zheng, Guo-Xiong Deng, Chunxiao Liu, Bi-Liu Wei
Software Mentions: 1
Published: about 5 years ago

10.1186/s12944-015-0072-8

Eicosapentaenoic and docosahexaenoic acid-enriched high fat diet delays the development of fatty liver in mice
Cited by: 25
Author(s): Nikulkumar Soni, Intawat Nookaew, Ann‐Sofie Sandberg, Britt G. Gabrielsson
Software Mentions: 1
Published: over 9 years ago

10.1186/1756-0500-7-871

miRNome of inflammatory breast cancer
Cited by: 35
Author(s): D. V. Maltseva, Vladimir Galatenko, Timur R. Samatov, Svetlana Zhikrivetskaya, N. A. Khaustova, И. Н. Нечаев, M. Yu. Shkurnikov, A. V. Lebedev, Irina Mityakina, А. Д. Каприн, Udo Schumacher, Alexander G. Tonevitsky
Software Mentions: 1
Published: almost 10 years ago

10.26508/lsa.201800153

Variants of<i>DNMT3A</i>cause transcript-specific DNA methylation patterns and affect hematopoiesis
Cited by: 16
Author(s): Tanja Božić, Joana Frobel, Annamarija Raić, Fabio Ticconi, Chao-Chung Kuo, Stefanie Heilmann‐Heimbach, Tamme W. Goecke, Martin Zenke, Edgar Jost, Ivan G. Costa, Wolfgang Wagner
Software Mentions: 1
Published: almost 6 years ago

10.26508/lsa.202101034

High levels of TFAM repress mammalian mitochondrial DNA transcription in vivo
Cited by: 29
Author(s): Nina A. Bonekamp, Min Jiang, Elisa Motori, Rodolfo Garcia Villegas, Camilla Koolmeister, Ilian Atanassov, Andrea Mesaros, Chan Bae Park, Nils‐Göran Larsson
Software Mentions: 1
Published: about 3 years ago

10.1093/infdis/jiy420

Impact of Zostavax Vaccination on T-Cell Accumulation and Cutaneous Gene Expression in the Skin of Older Humans After Varicella Zoster Virus Antigen–Specific Challenge
Cited by: 10
Author(s): Nayna Patel, Milica Vukmanovic‐Stejic, Mayte Suárez‐Fariñas, Emma S. Chambers, Daisy Sandhu, Judilyn Fuentes‐Duculan, Neil A. Mabbott, M.H.A. Rustin, James G. Krueger, Arne N. Akbar
Software Mentions: 1
Published: about 6 years ago

10.3390/life10100248

Novel Methylation Patterns Predict Outcome in Uveal Melanoma
Cited by: 4
Author(s): Sarah Tadhg Ferrier, Julia V. Burnier
Software Mentions: 1
Published: about 4 years ago

10.1186/s13104-015-1567-0

Derivation of induced pluripotent stem cells from orangutan skin fibroblasts
Cited by: 22
Author(s): Krishna Ramaswamy, Wing Yan Yik, Xiaoming Wang, Erin N. Oliphant, Wange Lu, Darryl Shibata, Oliver A. Ryder, Joseph G. Hacia
Software Mentions: 1
Published: about 9 years ago

10.1186/1756-0500-5-40

Factors affecting the yield of microRNAs from laser microdissectates of formalin-fixed tissue sections
Cited by: 6
Author(s): Santosh K. Patnaik, Eric Kannisto, Sai Yendamuri
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2199-13-9

Novel polysome messages and changes in translational activity appear after induction of adipogenesis in 3T3-L1 cells
Cited by: 16
Author(s): Carolin Fromm‐Dornieden, Silvia von der Heyde, Oleksandr Lytovchenko, Gabriela Salinas-Riester, Bertram Brenig, Tim Beißbarth, Bernhard Baumgartner
Software Mentions: 1
Published: over 12 years ago

10.3390/life11040320

Long Noncoding RNA NEAT1 as a Potential Candidate Biomarker for Prostate Cancer
Cited by: 6
Author(s): Diana Nițușcă, Anca Marcu, Alis Dema, Loredana Bălăcescu, Ovidiu Bălăcescu, Răzvan Bardan, A. Cumpanas, Ioan Ovidiu Sîrbu, Bogdan Petruţ, Edward Șeclăman, Cătălin Marian
Software Mentions: 1
Published: over 3 years ago

10.1038/s41388-018-0277-1

Inhibition of GPR158 by microRNA-449a suppresses neural lineage of glioma stem/progenitor cells and correlates with higher glioma grades
Cited by: 20
Author(s): Ningning Li, Ying Zhang, Kastytis Šidlauskas, Matthew Ellis, Ivor H. Evans, Paul Frankel, Joanne Lau, Tedani El-Hassan, Loredana Guglielmi, Jessica Broni, Angela Richard-Loendt, Sebastian Brandner
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22041523

Multiomics Integration in Skin Diseases with Alterations in Notch Signaling Pathway: PlatOMICs Phase 1 Deployment
Cited by: 8
Author(s): Lucas André Cavalcanti Brandão, Paola Maura Tricarico, Rossella Gratton, Almerinda Agrelli, Luisa Zupin, Haissam Abou-Saleh, Romero Marinho de Moura, Sérgio Crovella
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13104-021-05635-3

Integrated microRNA and mRNA gene expression in peripheral blood mononuclear cells in response to acute psychosocial stress: a repeated-measures within-subject pilot study
Cited by: 1
Author(s): Magdalena Jurkiewicz, Anett Mueller-Alcazar, Dirk Moser, Indralatha Jayatilaka, Anatoly Mikhailik, Jamie Ferri, Nia Fogelman, Turhan Canli
Software Mentions: 1
Published: over 3 years ago

10.1038/leu.2013.362

Epimutations mimic genomic mutations of DNMT3A in acute myeloid leukemia
Cited by: 45
Author(s): Edgar Jost, Qiong Lin, Carola I. Weidner, Stefan Wilop, Melanie Hoffmann, Thomas Walenda, Mirle Schemionek, Oliver Herrmann, Martin Zenke, Tim H. Brümmendorf, Steffen Koschmieder, Wolfgang Wagner
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41388-018-0546-z

Regulation of human glioma cell migration, tumor growth, and stemness gene expression using a Lck targeted inhibitor
Cited by: 48
Author(s): John P. Zepecki, Kristin M. Snyder, Margot-Martinez Moreno, Eduardo Fajardo, András Fiser, Jennifer K. Ness, Atom Sarkar, Steven Toms, Nikos Tapinos
Software Mentions: 1
Published: about 6 years ago

10.1186/s12890-017-0472-9

Unsupervised gene expression analyses identify IPF-severity correlated signatures, associated genes and biomarkers
Cited by: 24
Author(s): Yunguan Wang, Jaswanth Yella, Jing Chen, Francis X. McCormack, Satish K. Madala, Anil G. Jegga
Software Mentions: 1
Published: about 7 years ago

10.1038/s41388-018-0577-5

Integrative network biology analysis identifies miR-508-3p as the determinant for the mesenchymal identity and a strong prognostic biomarker of ovarian cancer
Cited by: 36
Author(s): Linjie Zhao, Wei Wang, Lian Xu, Tao Yi, Xia Zhao, Yuquan Wei, Louis Vermeulen, Ajay Goel, Shengtao Zhou, Xin Wang
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2466-11-39

The asthma candidate gene NPSR1 mediates isoform specific downstream signalling
Cited by: 22
Author(s): Christina Orsmark-Pietras, Johanna Vendelin, Francesca Anedda, Sara Bruce, Mikael Adner, L. Sundman, Ville Pulkkinen, Harri Alenius, Mauro D’Amato, Cilla Söderhäll, Juha Kere
Software Mentions: 1
Published: over 13 years ago

10.1038/leu.2016.187

Citrullination of histone H3 drives IL-6 production by bone marrow mesenchymal stem cells in MGUS and multiple myeloma
Cited by: 37
Author(s): Gavin McNee, Katherine L. Eales, Wenbin Wei, D. R. Williams, Angelique Barkhuizen, David B. Bartlett, Sarah Essex, Seetharam Anandram, Andrew Filer, Paul Moss, Guy Pratt, Supratik Basu, Clare C. Davies, Daniel A. Tennant
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2180-12-9

Interleukin-8 is the single most up-regulated gene in whole genome profiling of H. pylori exposed gastric epithelial cells
Cited by: 67
Author(s): Lars Lohne Eftang, Ying Esbensen, Tone Tannæs, Ida Rashida Khan Bukholm, Geir Bukholm
Software Mentions: 1
Published: almost 13 years ago

10.1155/2020/1230513

Six-Gene Signature Associated with Immune Cells in the Progression of Atherosclerosis Discovered by Comprehensive Bioinformatics Analyses
Cited by: 20
Author(s): Bin Zhao, Dan Wang, Yanling Liu, Xiaohong Zhang, Weiping Zheng, Jinling Wang, Ting Su, Linshan Duan, Yan Wang, Yuehua Zhang, Yilin Zhao
Software Mentions: 1
Published: over 4 years ago

10.1038/oncsis.2017.33

Cyclin-dependent kinase 7 is a therapeutic target in high-grade glioma
Cited by: 52
Author(s): Sameer A. Greenall, Yi Chieh Lim, Camilla B. Mitchell, Kathleen S. Ensbey, Brett W. Stringer, Alexander L. Wilding, Geraldine M. O’Neill, Kerrie L. McDonald, Daniel J. Gough, Bryan W. Day, Terrance G. Johns
Software Mentions: 1
Published: over 7 years ago

10.1038/s41389-018-0032-z

Efficacy of the highly selective focal adhesion kinase inhibitor BI 853520 in adenocarcinoma xenograft models is linked to a mesenchymal tumor phenotype
Cited by: 36
Author(s): Ulrich Hirt, Irene C. Waizenegger, Norbert Schweifer, Christian Haslinger, Daniel Gerlach, Jürgen Braunger, Ulrike Weyer-Czernilofsky, Heinz Stadtmüller, Ioannis Sapountzis, Gerd Bader, Andreas Zoephel, Bojan Bister, Anke Baum, Jens Quant, Norbert Kraut, Pilar Garin‐Chesa, Günther R. Adolf
Software Mentions: 1
Published: over 6 years ago

10.1186/s12890-021-01549-9

GPC3 affects the prognosis of lung adenocarcinoma and lung squamous cell carcinoma
Cited by: 6
Author(s): Jing Ning, Shenyi Jiang, Xiaoxi Li, Yang Wang, Xuhong Deng, Zhiqiang Zhang, Lijie He, Daqing Wang, Youyu Jiang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12884-021-03777-7

Differential circular RNA expression profiles in umbilical cord blood exosomes from preeclampsia patients
Cited by: 7
Author(s): Mingtao Cao, Juan Wen, Chaozhi Bu, Chunyan Li, Yongcheng Lin, Hong Zhang, Yanfang Gu, Zhonghua Shi, Yan Zhang, Wei Long, Le Zhang
Software Mentions: 1
Published: over 3 years ago

10.1155/2020/1615826

MFGE8, ALB, APOB, APOE, SAA1, A2M, and C3 as Novel Biomarkers for Stress Cardiomyopathy
Cited by: 8
Author(s): Xiaoyu Pan, Zai-Wei Zhang
Software Mentions: 1
Published: over 4 years ago

10.1155/2019/8490707

Identification of Differentially Expressed Genes and Signaling Pathways in Acute Myocardial Infarction Based on Integrated Bioinformatics Analysis
Cited by: 31
Author(s): Da-qiu Chen, Xiuying Kong, Xuwei Shen, Maozhi Huang, J. P. Zheng, Jing Sun, Shuai Xu
Software Mentions: 1
Published: over 5 years ago

10.1080/2162402X.2017.1414129

Interleukin 7-expressing fibroblasts promote breast cancer growth through sustenance of tumor cell stemness
Cited by: 37
Author(s): Maximilian Boesch, Lucas Onder, Hung‐Wei Cheng, Mario Novković, Urs Mörbe, Sieghart Sopper, Guenther Gastl, Wolfram Jochum, Thomas Ruhstaller, Michael Knauer, Burkhard Ludewig
Software Mentions: 1
Published: almost 7 years ago

10.1186/1475-2840-11-15

Global gene expression profiling displays a network of dysregulated genes in non-atherosclerotic arterial tissue from patients with type 2 diabetes
Cited by: 30
Author(s): Vibe Skov, Steen Knudsen, Malene Olesen, Morten Hartvig Hansen, Lars Melholt Rasmussen
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12933-016-0353-1

Insulin resistance, endothelial function, angiogenic factors and clinical outcome in non-diabetic patients with chest pain without myocardial perfusion defects
Cited by: 19
Author(s): Helena U. Westergren, Sara Svedlund, Remi A. Momo, Juuso Blomster, Karin Wåhlander, Erika Rehnström, Peter J. Greasley, Regina Fritsche‐Danielson, Jan Oscarsson, Li‐Ming Gan
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12870-016-0740-5

Fusarium oxysporum f.sp. radicis-lycopersici induces distinct transcriptome reprogramming in resistant and susceptible isogenic tomato lines
Cited by: 40
Author(s): Daniele Manzo, Francesca Ferriello, Gerardo Puopolo, A. Zoina, Daniela D’Esposito, Luca Tardella, Alberto Ferrarini, Maria Raffaella Ercolano
Software Mentions: 1
Published: over 8 years ago

10.1155/2019/8645840

The Expression Profile of MicroRNAs in Small and Large Abdominal Aortic Aneurysms
Cited by: 13
Author(s): Václava Černá, Pavel Ostašov, Pavel Pitule, Jiří Moláček, Vladislav Třeška, Martin Pešta
Software Mentions: 1
Published: almost 5 years ago

Projects: bioconductor: limma

Papers Mentioning limma 7,776