bioconductor: limma | Projects | Ecosyste.ms: Papers

10.3389/fcimb.2019.00016

Phagocytosis of Aspergillus fumigatus by Human Bronchial Epithelial Cells Is Mediated by the Arp2/3 Complex and WIPF2
Cited by: 9
Author(s): Luka Culibrk, Carys A. Croft, Amreen Toor, Shu Yang, Gurpreet K. Singhera, Delbert R. Dorscheid, Margo M. Moore, Scott J. Tebbutt
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2021.693981

Transforming Growth Factor-β1 Promotes M1 Alveolar Macrophage Polarization in Acute Lung Injury by Up-Regulating DNMT1 to Mediate the microRNA-124/PELI1/IRF5 Axis
Cited by: 6
Author(s): Yongqi Wang, Xiaoqing Wang, Hong Zhang, Baohui Han, Yuanmei Ye, Mengjie Zhang, Yingbin Wang, Jianjun Xue, Chunai Wang
Software Mentions: 1
Published: over 3 years ago

10.1186/1746-6148-9-78

Gene expression profiles in canine mammary carcinomas of various grades of malignancy
Cited by: 13
Author(s): Karol Pawłowski, Henryk Maciejewski, I. Dolka, Jan A. Mol, T. Motyl, Magdalena Król
Software Mentions: 1
Published: over 11 years ago

10.3389/fcimb.2021.747135

Lipocalin 2 Is a Regulator During Macrophage Polarization Induced by Soluble Worm Antigens
Cited by: 2
Author(s): Hanyu Shen, Ziheng Wang, Ailong Huang, Dandan Zhu, Pingping Sun, Yinong Duan
Software Mentions: 1
Published: about 3 years ago

10.3389/fcimb.2019.00426

Transcriptomic Changes of Piscirickettsia salmonis During Intracellular Growth in a Salmon Macrophage-Like Cell Line
Cited by: 25
Author(s): Alejandro Zúñiga, Pamela Aravena, Rodrigo Pulgar, Dante Travisany, Javiera Ortíz-Severín, Francisco P. Chávez, Alejandro Maass, Maurício González, Verónica Cambiazo
Software Mentions: 1
Published: almost 5 years ago

10.3389/fncel.2017.00321

Human iPSC-Derived Cerebellar Neurons from a Patient with Ataxia-Telangiectasia Reveal Disrupted Gene Regulatory Networks
Cited by: 18
Author(s): Samuel Nayler, Joseph E. Powell, Darya Vanichkina, Othmar Korn, Christine A. Wells, Refik Kanjhan, Jian Sun, Ryan J. Taft, Martin F. Lavin, Ernst J. Wolvetang
Software Mentions: 1
Published: about 7 years ago

10.3389/fncel.2013.00207

Impaired rRNA synthesis triggers homeostatic responses in hippocampal neurons
Cited by: 28
Author(s): Anna Kiryk, Katharina Sowodniok, Grzegorz Kreiner, Jan Rodriguez Parkitna, Aynur Sönmez, Tomasz Górkiewicz, Holger Bierhoff, Marcin Wawrzyniak, Artur Janusz, Birgit Liss, Witold Konopka, Günther Schütz, Leszek Kaczmarek, Rosanna Parlato
Software Mentions: 1
Published: almost 12 years ago

10.7554/eLife.48625

PUMILIO, but not RBMX, binding is required for regulation of genomic stability by noncoding RNA NORAD
Cited by: 50
Author(s): Mahmoud M. Elguindy, Florian Kopp, Mohammad Goodarzi, Frederick Rehfeld, Anu Thomas, Tsung Cheng Chang, Joshua T. Mendell
Software Mentions: 1
Published: over 5 years ago

10.3389/fncel.2013.00216

Early gene expression changes in spinal cord from SOD1G93A Amyotrophic Lateral Sclerosis animal model
Cited by: 38
Author(s): Gilson Pereira de Oliveira, Chrystian Junqueira Alves, Gerson Chadi
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12894-021-00857-w

Exploring microRNA target genes and identifying hub genes in bladder cancer based on bioinformatic analysis
Cited by: 3
Author(s): Hongjian Wu, Wubing Jiang, Guanghua Ji, Rong Xu, Gaobo Zhou, Hongyuan Yu
Software Mentions: 1
Published: over 3 years ago

10.3389/fncel.2017.00022

Microarray and qPCR Analyses of Wallerian Degeneration in Rat Sciatic Nerves
Cited by: 38
Author(s): Sheng Yi, Xin Tang, Jun Yu, Jie Liu, Fei Ding, Xiaosong Gu
Software Mentions: 1
Published: almost 8 years ago

10.3389/fncel.2016.00274

Ingenuity Pathway Analysis of Gene Expression Profiles in Distal Nerve Stump following Nerve Injury: Insights into Wallerian Degeneration
Cited by: 66
Author(s): Jun Yu, Xiaosong Gu, Sheng Yi
Software Mentions: 1
Published: almost 8 years ago

10.3389/fncel.2018.00397

Diverse Protein Profiles in CNS Myeloid Cells and CNS Tissue From Lipopolysaccharide- and Vehicle-Injected APPSWE/PS1ΔE9 Transgenic Mice Implicate Cathepsin Z in Alzheimer’s Disease
Cited by: 23
Author(s): Camilla Thygesen, Laura Ilkjær, Stefan Kempf, Anne Louise Hemdrup, Christian Ulrich von Linstow, Alicia Babcock, Sultan Darvesh, Martin R. Larsen, Bente Finsen
Software Mentions: 1
Published: about 6 years ago

10.3389/fncel.2014.00465

The effects of antenatal depression and antidepressant treatment on placental gene expression
Cited by: 19
Author(s): Jocelien Olivier, Helena Åkerud, Alkistis Skalkidou, Helena Kaihola, Inger Sundström‐Poromaa
Software Mentions: 1
Published: almost 10 years ago

10.18632/aging.102356

Circular RNA hsa_circ_0000515 acts as a miR-326 sponge to promote cervical cancer progression through up-regulation of ELK1
Cited by: 106
Author(s): Qiong Tang, Zhigang Chen, Liang Zhao, Hai Xu
Software Mentions: 1
Published: almost 5 years ago

10.3389/fchem.2021.677621

Identification of Dysregulated Complement Activation Pathways Driven by N-Glycosylation Alterations in T2D Patients
Cited by: 4
Author(s): Yang Zhao, Man Wang, Bo Meng, Ying Gao, Zhichao Xue, Minke He, Jing You, Xinhua Dai, Dan Yan, Xiang Fang
Software Mentions: 1
Published: over 3 years ago

10.3389/fendo.2019.00599

Integrated Analysis of Multiple Microarray Studies to Identify Novel Gene Signatures in Non-alcoholic Fatty Liver Disease
Cited by: 36
Author(s): Xi Jia, Tianyu Zhai
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.203478

LINC01087 inhibits glioma cell proliferation and migration, and increases cell apoptosis via miR-384/Bcl-2 axis
Cited by: 6
Author(s): Yaohui Tian, Linwei Jia, Zhifeng Liu, Yong-Han Chen
Software Mentions: 1
Published: about 3 years ago

10.3389/fendo.2019.00396

Thyroid Hormone Receptor Alpha Is Required for Thyroid Hormone-Dependent Neural Cell Proliferation During Tadpole Metamorphosis
Cited by: 12
Author(s): Luan Wen, Cara He, Christopher J. Sifuentes, Robert J. Denver
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.671523

Bioinformatic Analysis of Crosstalk Between circRNA, miRNA, and Target Gene Network in NAFLD
Cited by: 4
Author(s): Cen Du, Lan Shen, Zhuoqi Ma, Jian Du, Shi Jin
Software Mentions: 1
Published: over 3 years ago

10.1186/1752-0509-7-69

Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice
Cited by: 17
Author(s): Nicolas Tchitchek, Amie J. Eisfeld, Jennifer Tisoncik-Go, Laurence Josset, Lisa E. Gralinski, Christophe Bécavin, Susan C. Tilton, Bobbie-Jo M. Webb-Robertson, Martin T. Ferris, Allison L. Totura, Chengjun Liu, Gabriele Neumann, Thomas O. Metz, Richard D. Smith, Katrina M. Waters, Ralph S. Baric, Yoshihiro Kawaoka, Michael G. Katze
Software Mentions: 1
Published: over 11 years ago

10.1186/1752-0509-4-68

Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation
Cited by: 9
Author(s): Subir Kumar Nandy, Paula Jouhten, Jens Nielsen
Software Mentions: 1
Published: over 14 years ago

10.1186/1752-0509-7-80

Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder
Cited by: 23
Author(s): Ruoting Yang, Bernie J. Daigle, Seid Muhie, Rasha Hammamieh, Marti Jett, Linda R. Petzold, Francis J. Doyle
Software Mentions: 1
Published: over 11 years ago

10.3389/fgene.2021.670787

Systemic Bioinformatic Analyses of Nuclear-Encoded Mitochondrial Genes in Hypertrophic Cardiomyopathy
Cited by: 1
Author(s): Zhaochong Tan, Li Wu, Yan Fang, Pingshan Chen, Rong Wan, Yang Shen, Jianping Hu, Zhenhong Jiang, Kui Hong
Software Mentions: 1
Published: over 3 years ago

10.1007/s00401-019-02120-x

Antibody signatures in patients with histopathologically defined multiple sclerosis patterns
Cited by: 11
Author(s): Lidia Stork, David Ellenberger, Klemens Ruprecht, Markus Reindl, Tim Beißbarth, Tim Friede, Tania Kümpfel, Lisa Ann Gerdes, Mareike Gloth, Thomas Liman, Friedemann Paul, Wolfgang Brück, Imke Metz
Software Mentions: 1
Published: almost 5 years ago

10.1186/1752-0509-2-101

Genetic and systems level analysis of Drosophila sticky/citron kinase and dFmr1 mutants reveals common regulation of genetic networks
Cited by: 9
Author(s): Christopher R. Bauer, Andrew Michael Epstein, Sarah Sweeney, Daniela C. Zarnescu, Giovanni Bosco
Software Mentions: 1
Published: almost 16 years ago

10.3389/fgene.2020.582366

MiR-497-5p Regulates Osteo/Odontogenic Differentiation of Stem Cells From Apical Papilla via the Smad Signaling Pathway by Targeting Smurf2
Cited by: 12
Author(s): Junqing Liu, Xiaolong Wang, Mengxiao Song, Jing Du, Jiali Yu, Wenzhou Zheng, Chengfei Zhang, Yan Wang
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2021.708275

Integrative Analyses of Genes Associated With Right Ventricular Cardiomyopathy Induced by Tricuspid Regurgitation
Cited by: 5
Author(s): Chengnan Tian, Yanchen Yang, Yingjie Ke, Liang Yang, Lishan Zhong, Zhenzhong Wang, Huanlei Huang
Software Mentions: 1
Published: about 3 years ago

10.1186/s13104-018-4020-3

Transcriptomes of microglia in experimental cerebral malaria in mice in the presence and absence of Type I Interferon signaling
Cited by: 5
Author(s): Carlos Talavera-López, Barbara Capuccini, Richard Mitter, Jing-wen Lin, Jean Langhorne
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13104-020-05121-2

Physical activity and blood gene expression profiles: the Norwegian Women and Cancer (NOWAC) Post-genome cohort
Cited by: 1
Author(s): Karina Standahl Olsen, Marko Lukic, Kristin Benjaminsen Borch
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2021.709514

Identification of Key lncRNA–mRNA Pairs and Functional lncRNAs in Breast Cancer by Integrative Analysis of TCGA Data
Cited by: 5
Author(s): Zhe Li, Qian Zheng, Fei Chen, Shujun Jiang, Lingjia Meng, Jinzhong Chen
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2021.721258

COL3A1 and MMP9 Serve as Potential Diagnostic Biomarkers of Osteoarthritis and Are Associated With Immune Cell Infiltration
Cited by: 19
Author(s): Shushan Li, Haitao Wang, Yi Zhang, Renqiu Qiao, Peige Xia, Zhiheng Kong, Hongbo Zhao, Li Yin
Software Mentions: 1
Published: about 3 years ago

10.7554/eLife.23190

Different TCR-induced T lymphocyte responses are potentiated by stiffness with variable sensitivity
Cited by: 135
Author(s): Michael Saitakis, Stéphanie Dogniaux, Christel Goudot, Nathalie Bufi, Sophie Asnacios, Mathieu Maurin, Clotilde Randriamampita, Atef Asnacios, Claire Hivroz
Software Mentions: 1
Published: over 7 years ago

10.18632/aging.101220

Progressive changes in non-coding RNA profile in leucocytes with age
Cited by: 11
Author(s): Maider Muñoz-Culla, Haritz Irizar, Ana Gorostidi, Ainhoa Alberro, Iñaki Osorio-Querejeta, Javier Ruíz‐Martínez, Javier Olascoaga, Adolfo López de Munaín, David Otaegui
Software Mentions: 1
Published: over 7 years ago

10.1186/s13104-019-4410-1

Unique microglia expression profile in developing white matter
Cited by: 20
Author(s): Ori Staszewski, Nora Hagemeyer
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.663110

Identification of Metastasis-Associated MicroRNAs in Metastatic Melanoma by miRNA Expression Profile and Experimental Validation
Cited by: 5
Author(s): Yunshu Gao, Jiahua Xu, Hongwei Li, Yi Hu, Guanzhen Yu
Software Mentions: 1
Published: over 3 years ago

10.1186/1756-0500-6-428

Parallel deep transcriptome and proteome analysis of zebrafish larvae
Cited by: 15
Author(s): Magnus Palmblad, Christiaan V. Henkel, Ron P. Dirks, Annemarie H. Meijer, André M. Deelder, Herman P. Spaink
Software Mentions: 1
Published: about 11 years ago

10.1016/j.jprot.2014.05.007

Identification and quantification of the basal and inducible Nrf2-dependent proteomes in mouse liver: Biochemical, pharmacological and toxicological implications
Cited by: 52
Author(s): James Walsh, Rosalind E. Jenkins, Michael H. L. Wong, Adeniyi Olayanju, Helen Powell, Ian M. Copple, Paul M. O’Neill, Christopher E. Goldring, Neil R. Kitteringham, B. Kevin Park
Software Mentions: 1
Published: over 10 years ago

10.1186/1756-0500-7-871

miRNome of inflammatory breast cancer
Cited by: 35
Author(s): D. V. Maltseva, Vladimir Galatenko, Timur R. Samatov, Svetlana Zhikrivetskaya, N. A. Khaustova, И. Н. Нечаев, M. Yu. Shkurnikov, A. V. Lebedev, Irina Mityakina, А. Д. Каприн, Udo Schumacher, Alexander G. Tonevitsky
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13104-015-1567-0

Derivation of induced pluripotent stem cells from orangutan skin fibroblasts
Cited by: 22
Author(s): Krishna Ramaswamy, Wing Yan Yik, Xiaoming Wang, Erin N. Oliphant, Wange Lu, Darryl Shibata, Oliver A. Ryder, Joseph G. Hacia
Software Mentions: 1
Published: about 9 years ago

10.3389/fgene.2021.569318

A Signature of Autophagy-Related Long Non-coding RNA to Predict the Prognosis of Breast Cancer
Cited by: 10
Author(s): Xiaoping Li, Jishang Chen, Qihe Yu, Hui Huang, Zhuangsheng Liu, Chengxing Wang, Yuan He, Xin Zhang, Weiwen Li, Chao Li, Jinglin Zhao, Wansheng Long
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2020.01030

Long Non-coding RNA AGAP2-AS1 Silencing Inhibits PDLIM5 Expression Impeding Prostate Cancer Progression via Up-Regulation of MicroRNA-195-5p
Cited by: 11
Author(s): Pingbo Xie, Mingsheng Liu, Fen Chen, Shuo Wu, Tao Shao, Wei Wang, Chen-Xiang Xu, Huijie Zhou
Software Mentions: 1
Published: about 4 years ago

10.1186/1756-0500-5-40

Factors affecting the yield of microRNAs from laser microdissectates of formalin-fixed tissue sections
Cited by: 6
Author(s): Santosh K. Patnaik, Eric Kannisto, Sai Yendamuri
Software Mentions: 1
Published: almost 13 years ago

10.1186/s13104-021-05635-3

Integrated microRNA and mRNA gene expression in peripheral blood mononuclear cells in response to acute psychosocial stress: a repeated-measures within-subject pilot study
Cited by: 1
Author(s): Magdalena Jurkiewicz, Anett Mueller-Alcazar, Dirk Moser, Indralatha Jayatilaka, Anatoly Mikhailik, Jamie Ferri, Nia Fogelman, Turhan Canli
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2018.00241

Gradual and Acute Temperature Rise Induces Crossing Endocrine, Metabolic, and Immunological Pathways in Maraena Whitefish (Coregonus maraena)
Cited by: 24
Author(s): Alexander Rebl, Marieke Verleih, Mareen Nipkow, Simone Altmann, Ralf Bochert, Tom Goldammer
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms12117554

Enhanced Differentiation of Three-Gene-Reprogrammed Induced Pluripotent Stem Cells into Adipocytes via Adenoviral-Mediated PGC-1α Overexpression
Cited by: 9
Author(s): Pin I. Huang, Yueh Ching Chou, Yuh Lih Chang, Yueh Chien, Kuan Hsuan Chen, Wen Song, Chi Hsien Peng, Chueh Chang, Shin-Da Lee, Kai Lü, Yi Jen Chen, Chia‐Hua Kuo, Chuan Chih Hsu, Hsin Chen Lee, Ming Chi Yung
Software Mentions: 1
Published: about 13 years ago

10.3389/fgene.2020.580036

Effect of N6-Methyladenosine Regulators on Progression and Prognosis of Triple-Negative Breast Cancer
Cited by: 24
Author(s): Shanshan Wang, Xuan Zou, Yajie Chen, William C. Cho, Xiang Zhou
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12890-017-0472-9

Unsupervised gene expression analyses identify IPF-severity correlated signatures, associated genes and biomarkers
Cited by: 24
Author(s): Yunguan Wang, Jaswanth Yella, Jing Chen, Francis X. McCormack, Satish K. Madala, Anil G. Jegga
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2466-11-39

The asthma candidate gene NPSR1 mediates isoform specific downstream signalling
Cited by: 22
Author(s): Christina Orsmark-Pietras, Johanna Vendelin, Francesca Anedda, Sara Bruce, Mikael Adner, L. Sundman, Ville Pulkkinen, Harri Alenius, Mauro D’Amato, Cilla Söderhäll, Juha Kere
Software Mentions: 1
Published: over 13 years ago

10.3390/ijms160816816

Differential DNA Methylation in Relation to Age and Health Risks of Obesity
Cited by: 36
Author(s): María L. Mansego, Fermı́n I. Milagro, M. Ángeles Zulet, María J. Moreno-Aliaga, J. Alfredo Martínéz
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms17040568

Prognostic Value of MicroRNAs in Preoperative Treated Rectal Cancer
Cited by: 16
Author(s): Azadeh Azizian, Ingo Epping, Frank Krämer, Peter Jo, Markus Bernhardt, Julia Kitz, Gabriela Salinas, Hendrik A. Wolff, Marian Grade, Tim Beißbarth, B. Michael Ghadimi, Jochen Gaedcke
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms17050665

Characterization of Micro-RNA Changes during the Progression of Type 2 Diabetes in Zucker Diabetic Fatty Rats
Cited by: 47
Author(s): Denis Delić, Claudia Eisele, RM Schmid, Gerd Luippold, Eric Mayoux, Rolf Grempler
Software Mentions: 1
Published: over 8 years ago

10.1186/s12890-021-01549-9

GPC3 affects the prognosis of lung adenocarcinoma and lung squamous cell carcinoma
Cited by: 6
Author(s): Jing Ning, Shenyi Jiang, Xiaoxi Li, Yang Wang, Xuhong Deng, Zhiqiang Zhang, Lijie He, Daqing Wang, Youyu Jiang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12884-021-03777-7

Differential circular RNA expression profiles in umbilical cord blood exosomes from preeclampsia patients
Cited by: 7
Author(s): Mingtao Cao, Juan Wen, Chaozhi Bu, Chunyan Li, Yongcheng Lin, Hong Zhang, Yanfang Gu, Zhonghua Shi, Yan Zhang, Wei Long, Le Zhang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12870-016-0740-5

Fusarium oxysporum f.sp. radicis-lycopersici induces distinct transcriptome reprogramming in resistant and susceptible isogenic tomato lines
Cited by: 40
Author(s): Daniele Manzo, Francesca Ferriello, Gerardo Puopolo, A. Zoina, Daniela D’Esposito, Luca Tardella, Alberto Ferrarini, Maria Raffaella Ercolano
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms17081260

Bioinformatics and Microarray Analysis of miRNAs in Aged Female Mice Model Implied New Molecular Mechanisms for Impaired Fracture Healing
Cited by: 29
Author(s): Bing He, Zongkang Zhang, Jin Liu, Yao He, Tao Tang, Jie Li, Baosheng Guo, Aiping Lü, Bao-Ting Zhang, Ge Zhang
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2229-14-108

Day and night heat stress trigger different transcriptomic responses in green and ripening grapevine (vitis vinifera) fruit
Cited by: 134
Author(s): Markus Rienth, Laurent Torregrosa, Nathalie Luchaire, Ratthaphon Chatbanyong, David Lecourieux, Mary T. Kelly, Charles Romieu
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2020.563882

Identification of a Twelve-Gene Signature and Establishment of a Prognostic Nomogram Predicting Overall Survival for Medulloblastoma
Cited by: 6
Author(s): Sihan Zhu, Fei Lin, Zhenghe Chen, Xiaobing Jiang, Zhang Ji, Qiulan Yang, Yinsheng Chen, Jian Wang
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2229-11-120

Global transcriptome analysis of two ameiotic1 alleles in maize anthers: defining steps in meiotic entry and progression through prophase I
Cited by: 28
Author(s): Guo-Ling Nan, Arnaud Ronceret, Rachel Wang, John Fernandes, W. Zacheus Cande, Virginia Walbot
Software Mentions: 1
Published: almost 14 years ago

10.3390/ijms18061298

Using Coexpression Protein Interaction Network Analysis to Identify Mechanisms of Danshensu Affecting Patients with Coronary Heart Disease
Cited by: 24
Author(s): Mengqi Huo, Zhixin Wang, Dongxue Wu, Yanling Zhang, Yu Qiao
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-020-2317-6

Comparative transcriptome analyses of fruit development among pears, peaches, and strawberries provide new insights into single sigmoid patterns
Cited by: 18
Author(s): Mao-Song Pei, Suhao Cao, Lei Wu, Guo‐Ming Wang, Zhihua Xie, Chao Gu, Shaoling Zhang
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2020.575770

TMPRSS2 Correlated With Immune Infiltration Serves as a Prognostic Biomarker in Prostatic Adenocarcinoma: Implication for the COVID-2019
Cited by: 3
Author(s): Lianxiang Luo, Yi Zheng, Mingyue Li, Xinjie Lin, Xiaodi Li, Xiaoling Li, Liao Cui, Hui Luo
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2229-13-27

Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids
Cited by: 48
Author(s): Hyun Jo Koo, Eric T. McDowell, Xiaoqiang Ma, Kevin Greer, Jeremy Kapteyn, Zhengzhi Xie, Anne Descour, Hye Ran Kim, Yeisoo Yu, David Kudrna, Rod A. Wing, Carol Soderlund, David R. Gang
Software Mentions: 1
Published: almost 12 years ago

10.3389/fgene.2019.00304

Integrative Approach to Reveal Cell Type Specificity and Gene Candidates for Psoriatic Arthritis Outside the MHC
Cited by: 6
Author(s): Matthew Patrick, Philip E. Stuart, Kalpana Raja, Sunyi Chi, Zhi He, John J. Voorhees, Trilokraj Tejasvi, Jóhann E. Guðjónsson, J. Michelle Kahlenberg, Vinod Chandran, Proton Rahman, Dafna D. Gladman, Rajan P. Nair, James T. Elder, Lam C. Tsoi
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2229-11-173

SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus
Cited by: 135
Author(s): Steven G. Hussey, Eshchar Mizrachi, Antanas Spokevicius, Gerd Bossinger, David Kenneth Berger, Alexander Andrew Myburg
Software Mentions: 1
Published: almost 13 years ago

10.3390/ijms18122728

Identification of Differentially Expressed miRNAs in Colorado Potato Beetles (Leptinotarsa decemlineata (Say)) Exposed to Imidacloprid
Cited by: 18
Author(s): Mathieu D. Morin, Pierre J. Lyons, Nicolas Crapoulet, Sébastien Boquel, Pier Jr Morin
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2229-10-134

Delineating the structural, functional and evolutionary relationships of sucrose phosphate synthase gene family II in wheat and related grasses
Cited by: 13
Author(s): Shailendra Sharma, Nese Sreenivasulu, Vokkaliga T. Harshavardhan, Christiane Seiler, Shiveta Sharma, Zaynali Nezhad Khalil, Eduard Akhunov, Sunish K. Sehgal, Marion S. Röder
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12870-020-2258-0

Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators
Cited by: 9
Author(s): Sabine Guillaumie, Stéphane Decroocq, Nathalie Ollat, Serge Delrot, Éric Gomès, Sarah Jane Cookson
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2229-9-4

Linkage mapping of putative regulator genes of barley grain development characterized by expression profiling
Cited by: 11
Author(s): Christof Pietsch, Nese Sreenivasulu, Ulrich Wobus, Marion S. Röder
Software Mentions: 1
Published: almost 16 years ago

10.1186/1472-6793-13-9

Dynamically regulated miRNA-mRNA networks revealed by exercise
Cited by: 99
Author(s): Alexander G. Tonevitsky, D. V. Maltseva, Asghar Abbasi, Timur R. Samatov, D. A. Sakharov, M. Yu. Shkurnikov, A. V. Lebedev, Vladimir Galatenko, Anatoly I. Grigoriev, Hinnak Northoff
Software Mentions: 1
Published: over 11 years ago

10.3389/fgene.2020.00403

Identification of CircRNA–miRNA–mRNA Regulatory Network in Gastrointestinal Stromal Tumor
Cited by: 10
Author(s): Fangwen Zou, Ding Cao, Yifang Tang, Long Shu, Zhongkun Zuo, Leiyi Zhang
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2019.00884

MUDENG Expression Profiling in Cohorts and Brain Tumor Biospecimens to Evaluate Its Role in Cancer
Cited by: 3
Author(s): Juhyun Shin, Jun-Ha Choi, Seunghwa Jung, So-Mi Jeong, Jeongheon Oh, Do‐Young Yoon, Man Hee Rhee, Junseong Ahn, Se-Hyuk Kim, Jae-Wook Oh
Software Mentions: 1
Published: about 5 years ago

10.1186/s12903-021-01827-2

Association between chronic periodontitis and the risk of Alzheimer’s disease: combination of text mining and GEO dataset
Cited by: 8
Author(s): Zhengye Jiang, Yanxi Shi, Wenpeng Zhao, Li-Wei Zhou, Bingchang Zhang, Yuanyuan Xie, Yaya Zhang, Guowei Tan, Zhanxiang Wang
Software Mentions: 1
Published: about 3 years ago

10.18632/aging.202845

NET1 promotes HCC growth and metastasis in vitro and in vivo via activating the Akt signaling pathway
Cited by: 4
Author(s): Zhenhua Chen, Qian‐Zhi Ni, Xiuping Zhang, Ning Ma, Jing-Kai Feng, Kang Wang, Jingjing Li, Dong Xie, Xiaochun Ma, Shuqun Cheng
Software Mentions: 1
Published: over 3 years ago

10.1186/s12886-020-01381-5

Identification of potential molecular targets associated with proliferative diabetic retinopathy
Cited by: 6
Author(s): Dewang Shao, Shang He, Zi Ye, Xuyou Zhu, Wei Sun, Wei Fu, Tianju Ma, Zhaohui Li
Software Mentions: 1
Published: over 4 years ago

10.1186/s12868-016-0333-0

Poly(ADP-ribose) polymerase inhibitors activate the p53 signaling pathway in neural stem/progenitor cells
Cited by: 17
Author(s): Akiko Okuda, Shu Kurokawa, Masanori Takehashi, Aika Maeda, Katsuya Fukuda, Yukari Kubo, Hyuma Nogusa, Tomoka Takatani‐Nakase, Shujiro Okuda, Kunihiro Ueda, Seigo Tanaka
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2202-13-126

High throughput analysis reveals dissociable gene expression profiles in two independent neural systems involved in the regulation of social behavior
Cited by: 22
Author(s): Tyler J. Stevenson, Kirstin Replogle, Jenny Drnevich, David F. Clayton, Gregory F. Ball
Software Mentions: 1
Published: about 12 years ago

10.18632/aging.102995

PHTF2 regulates lipids metabolism in gastric cancer
Cited by: 12
Author(s): Yuling Chi, Haiyan Wang, Fengsong Wang, Mingcui Ding
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2021.695036

S100 Calcium Binding Protein A10, A Novel Oncogene, Promotes the Proliferation, Invasion, and Migration of Hepatocellular Carcinoma
Cited by: 8
Author(s): Xing Zhou, Min Shi, Jun Cao, Tianwen Yuan, Guanzhen Yu, Ying Chen, Wenzhen Fang, Hongwei Li
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms19072016

Concentrated Conditioned Media from Adipose Tissue Derived Mesenchymal Stem Cells Mitigates Visual Deficits and Retinal Inflammation Following Mild Traumatic Brain Injury
Cited by: 40
Author(s): Kumar Abhiram Jha, Mickey Pentecost, Raji Rajesh Lenin, Lada Klaic, Sally L. Elshaer, Jordy Gentry, J. M. Russell, Alex Beland, Anton Reiner, Veronique Jotterand, Nicolas Sohl, Rajashekhar Gangaraju
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.656759

Circ_0040039 May Aggravate Intervertebral Disk Degeneration by Regulating the MiR-874-3p-ESR1 Pathway
Cited by: 11
Author(s): Yongjin Li, Xuke Wang, Haiwei Xu, Guowang Li, Zhenxin Huo, Lilong Du, Kaihui Zhang, Ли Шен, Hao Li, Bei Xu
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2020.567200

Impact of Long Non-coding RNAs Associated With Microenvironment on Survival for Bladder Cancer Patients
Cited by: 7
Author(s): Gaoteng Lin, Baoyin Guo, Yulei Wei, Tianjie Lan, Simeng Wen, Gang Li
Software Mentions: 1
Published: about 4 years ago

10.1186/s12883-019-1509-x

Low free triiodothyronineis predicts worsen neurological outcome of patients with acute ischemic stroke: a retrospective study with bioinformatics analysis
Cited by: 12
Author(s): Shanchao Zhang, Xia Zhao, Shan Xu, Jing Yuan, Zhihua Si, Yang Yang, Shan Qiao, Xuxu Xu, Aihua Wang
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.203506

Genome-wide identification of altered RNA m6A profiles in vascular tissue of septic rats
Cited by: 9
Author(s): Zhujun Shen, Han Yao, Mu-Wen Nie, Yining Wang, Ruo‐Lan Xiang, Hongzhi Xie
Software Mentions: 1
Published: about 3 years ago

10.1098/rsob.170134

TGFβ-facilitated optic fissure fusion and the role of bone morphogenetic protein antagonism
Cited by: 28
Author(s): Max D. Knickmeyer, Juan L. Mateo, Priska Eckert, Eleni Roussa, Belal Rahhal, Aimée Zúñiga, Kerstin Krieglstein, Joachim Wittbrodt, Stephan Heermann
Software Mentions: 1
Published: over 6 years ago

10.1186/s12882-021-02356-4

Comprehensive analysis of IgA nephropathy expression profiles: identification of potential biomarkers and therapeutic agents
Cited by: 9
Author(s): Alieh Gholaminejad, Yousof Gheisari, Seyed Amir Jalali, Amir Roointan
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2199-13-9

Novel polysome messages and changes in translational activity appear after induction of adipogenesis in 3T3-L1 cells
Cited by: 16
Author(s): Carolin Fromm‐Dornieden, Silvia von der Heyde, Oleksandr Lytovchenko, Gabriela Salinas-Riester, Bertram Brenig, Tim Beißbarth, Bernhard Baumgartner
Software Mentions: 1
Published: over 12 years ago

10.3389/fmolb.2020.573327

Mapping the Multi-Organ miRNA-mRNA Regulatory Network in LPS-Mediated Endotoxemic Mice: Exploring the Shared Underlying Key Genes and Mechanisms
Cited by: 3
Author(s): Cong Zhang, Ying Liao, Zhihao Liu, Lijin Zeng, Zhihua Peng, Jinli Liao, Zhen Yang
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12867-017-0091-2

Microarray expression profiling in the denervated hippocampus identifies long noncoding RNAs functionally involved in neurogenesis
Cited by: 14
Author(s): Bingying Deng, Xiang Cheng, Haoming Li, Jianbing Qin, Mei Tian, Guohua Jin
Software Mentions: 1
Published: over 7 years ago

10.3389/fmolb.2021.670691

The Potential Role of hsa_circ_0005505 in the Rupture of Human Intracranial Aneurysm
Cited by: 7
Author(s): Xin Chen, Shuzhe Yang, Junhua Yang, Qingyuan Li, Maogui Li, Jun Wu, Hao Wang, Shuo Wang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12866-017-1137-9

6S RNA plays a role in recovery from nitrogen depletion in Synechocystis sp. PCC 6803
Cited by: 32
Author(s): Beate Heilmann, Kaisa Hakkila, Jens Georg, Taina Tyystjärvi, Wolfgang R. Hess, Ilka M. Axmann, Dennis Dienst
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12866-020-02059-0

The identification of co-expressed gene modules in Streptococcus pneumonia from colonization to infection to predict novel potential virulence genes
Cited by: 0
Author(s): Sadegh Azimzadeh Jamalkandi, Morteza Kouhsar, Jafar Salimian, Ali Ahmadi
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12866-019-1684-3

Temporal analysis of mRNA expression profiles in Orientia infected C3HeB/FeJ mouse
Cited by: 3
Author(s): Chien‐Chung Chao, Ruoting Yang, Zhiwen Zhang, Tatyana Belinskaya, Chye-Teik Chan, Stacy‐Ann Miller, Rasha Hammamieh, Marti Jett, Wei‐Mei Ching
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmolb.2020.600170

Differential Expression Profiles and Functional Prediction of Circular RNAs in Pediatric Dilated Cardiomyopathy
Cited by: 2
Author(s): Wei Sun, Bo Han, Dongxiao Cai, Jing Wang, Diandong Jiang, Honglei Jia
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2180-12-9

Interleukin-8 is the single most up-regulated gene in whole genome profiling of H. pylori exposed gastric epithelial cells
Cited by: 67
Author(s): Lars Lohne Eftang, Ying Esbensen, Tone Tannæs, Ida Rashida Khan Bukholm, Geir Bukholm
Software Mentions: 1
Published: almost 13 years ago

10.1186/1755-8794-4-67

Gene expression during normal and FSHD myogenesis
Cited by: 81
Author(s): Koji Tsumagari, Shao-Chi Chang, Michelle Lacey, Carl Baribault, Sridar V. Chittur, Janet E. Sowden, Rabi Tawil, Gregory E. Crawford, Melanie Ehrlich
Software Mentions: 1
Published: about 13 years ago

10.3389/fmolb.2021.679548

Gene Expression Profile in Immortalized Human Periodontal Ligament Fibroblasts Through hTERT Ectopic Expression: Transcriptome and Bioinformatic Analysis
Cited by: 2
Author(s): Lygia Sega Nogueira, Carolina Pinheiro Vasconcelos, Geovanni Pereira Mitre, Leonardo Oliveira Bittencourt, Jéssica Rodrigues Plaça, Maria Sueli da Silva Kataoka, João de Jesus Viana Pinheiro, Gustavo Garlet, Edivaldo Herculano Corrêa de Oliveira, Rafael Rodrigues Lima
Software Mentions: 1
Published: over 3 years ago

10.1186/s12920-020-0690-5

Amniotic fluid cell-free transcriptome: a glimpse into fetal development and placental cellular dynamics during normal pregnancy
Cited by: 24
Author(s): Adi L. Tarca, Roberto Romero, Roger Piqué-Regi, Percy Pacora, Bogdan Done, Marian Kacerovský, Gaurav Bhatti, Sunil Jaiman, Sonia S. Hassan, Chaur‐Dong Hsu, Nardhy Gómez-López
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-14-527

Dissecting the psoriasis transcriptome: inflammatory- and cytokine-driven gene expression in lesions from 163 patients
Cited by: 107
Author(s): William R. Swindell, Andrew Johnston, John J. Voorhees, James T. Elder, Jóhann E. Guðjónsson
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-11-414

ChIP on Chip: surprising results are often artifacts
Cited by: 65
Author(s): Torsten Waldminghaus, Kirsten Skarstad
Software Mentions: 1
Published: almost 15 years ago

Projects: bioconductor: limma

Papers Mentioning limma 7,776