10.1155/2021/6015473

Comprehensive Analysis of RNA Expression Profile Identifies Hub miRNA-circRNA Interaction Networks in the Hypoxic Ischemic Encephalopathy
Cited by: 1
Author(s): Wei Lin, Xia Li, Limin Wang, Yanyan Song, Hongmei Dong
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/4728947

An Autophagy-Related Long Noncoding RNA Signature Contributes to Poor Prognosis in Colorectal Cancer
Cited by: 35
Author(s): Jingsun Wei, Xin Ge, Yang Tang, Yuntao Qian, Wei Lu, Kai Jiang, Yunxia Fang, Maxwell Hwang, Dongliang Fu, Qian Xiao, Kefeng Ding
Software Mentions: 1
Published: almost 6 years ago

10.1042/BSR20191503

Systematic large-scale meta-analysis identifies miRNA-429/200a/b and miRNA-141/200c clusters as biomarkers for necrotizing enterocolitis in newborn
Cited by: 16
Author(s): Hong Liu, Yibiao Wang
Software Mentions: 1
Published: about 7 years ago

10.1093/jxb/erw295

Spatial and temporal transcriptome changes occurring during flower opening and senescence of the ephemeral hibiscus flower,<i>Hibiscus rosa-sinensis</i>
Cited by: 30
Author(s): Alice Trivellini, Giacomo Cocetta, Donald A. Hunter, Paolo Vernieri, António Ferrante
Software Mentions: 1
Published: about 10 years ago

10.1042/BSR20191985

Time series expression pattern of key genes reveals the molecular process of esophageal cancer
Cited by: 2
Author(s): Jiafu Wang, Xiang Xie, Yifeng Sun
Software Mentions: 1
Published: over 6 years ago

10.1093/jxb/erx104

Complexity and specificity of the maize (Zea mays L.) root hair transcriptome
Cited by: 18
Author(s): Stefan Hey, Jutta A. Baldauf, Nina Opitz, Andrew Lithio, Asher Pasha, Nicholas J. Provart, Dan Nettleton, Frank Hochholdinger
Software Mentions: 1
Published: over 9 years ago

10.1186/1755-8794-7-35

A systems biology approach to understand the pathophysiological mechanisms of cardiac pathological hypertrophy associated with rosiglitazone
Cited by: 18
Author(s): Lars Verschuren, Peter Y. Wielinga, Thomas Kelder, Marijana Radonjić, Kanita Salic, Robert Kleemann, Ben van Ommen, Teake Kooistra
Software Mentions: 1
Published: over 12 years ago

10.1186/s12920-019-0566-8

Discovery of stroke-related blood biomarkers from gene expression network models
Cited by: 13
Author(s): Konstantinos Theofilatos, Aigli Korfiati, Seferina Mavroudi, Matthew C. Cowperthwaite, Max Shpak
Software Mentions: 1
Published: about 7 years ago

10.1155/2020/3651051

In Silico Analysis Identifies Differently Expressed lncRNAs as Novel Biomarkers for the Prognosis of Thyroid Cancer
Cited by: 22
Author(s): Yuansheng Rao, Haiying Liu, Xiaojuan Yan, Jianhong Wang
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/5799348

Metabolic Analysis of Potential Key Genes Associated with Systemic Lupus Erythematosus Using Liquid Chromatography-Mass Spectrometry
Cited by: 1
Author(s): Li Zeng, Nian Chen, Junlin Liao, Xu Shen, Shenghua Song, Feng Wang
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/5193913

Identification of Differentially Expressed Circular RNAs as miRNA Sponges in Lung Adenocarcinoma
Cited by: 4
Author(s): Yuechao Liu, Xin Wang, Lulu Bi, Hongbo Huo, Yan Shi, Yimeng Cui, Yaowen Cui, Ruixue Gu, Dexin Jia, Shuai Zhang, Li Cai, Xiaomei Li, Ying Xing
Software Mentions: 1
Published: about 5 years ago

10.1038/s42003-020-01407-0

Neutrophil serine protease 4 is required for mast cell-dependent vascular leakage
Cited by: 4
Author(s): Andrew P. AhYoung, Sterling Eckard, Alvin Gogineni, Hongkang Xi, Shuei Liong Lin, Stefan Gerhardy, Christian L. Cox, Qui Phung, Jason A. Hackney, Anand Kumar Katakam, Mike Reichelt, Patrick Caplazi, Paolo Manzanillo, Juan Zhang, Merone Roose‐Girma, Lucinda Tam, Robert J. Newman, Aditya Murthy, Robby M. Weimer, Jennie R. Lill, Wyne P. Lee, Michele A. Grimbaldeston, Daniel Kirchhofer, Menno van Lookeren Campagne
Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/6610511

Osthole Inhibits Breast Cancer Progression through Upregulating Tumor Suppressor GNG7
Cited by: 11
Author(s): Jie Mei, Zhihui Wang, Shaojie Zhao, Yan Zhang
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-02273-0

Protein phosphatase 1 regulates atypical mitotic and meiotic division in Plasmodium sexual stages
Cited by: 17
Author(s): Mohammad Zeeshan, Rajan Kumar Pandey, Amit Kumar Subudhi, David J. P. Ferguson, Gursimran Kaur, Ravish Rashpa, Raushan Nugmanova, Declan Brady, Andrew R. Bottrill, Sue Vaughan, Mathieu Brochet, Mathieu Bollen, Arnab Pain, Anthony A. Holder, David S. Guttery, Rita Tewari
Software Mentions: 1
Published: over 5 years ago

10.1093/jxb/eraa130

Seasonal nitrogen remobilization and the role of auxin transport in poplar trees
Cited by: 10
Author(s): Gen Li, Rongshoung Lin, Chioma Egekwu, Joshua J. Blakeslee, Ji Lin, Emily A. Pettengill, Angus S. Murphy, Wendy Ann Peer, Nazrul Islam, Benjamin A. Babst, Fei Gao, Sergey Komarov, Yuan Chuan Tai, Gary D. Coleman
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-020-01586-w

Trade-offs between sperm viability and immune protein expression in honey bee queens (Apis mellifera)
Cited by: 23
Author(s): Alison McAfee, Abigail Chapman, Jeffery S. Pettis, Leonard J. Foster, David R. Tarpy
Software Mentions: 1
Published: almost 6 years ago

10.1093/jxb/erab306

ABA signalling promotes cell totipotency in the shoot apex of germinating embryos
Cited by: 14
Author(s): Baojian Chen, Martijn Fiers, Bas J.W. Dekkers, Lena Maas, G. Wilma van Esse, Gerco C. Angenent, Yanping Zhao, Kim Boutilier
Software Mentions: 1
Published: over 5 years ago

10.6061/clinics/2017(10)03

Identification of the difference in the pathogenesis in heart failure arising from different etiologies using a microarray dataset
Cited by: 7
Author(s): Guodong Yang, Shuping Chen, Aiqun Ma, Jun Lü, Tingzhong Wang
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.15662

PIF* promotes brain re-myelination locally while regulating systemic inflammation- clinically relevant multiple sclerosis <i>M.smegmatis</i> model
Cited by: 17
Author(s): Giuseppe Migliara, Martin Mueller, Alessia Piermattei, Chaya Brodie, Michael J. Paidas, Eytan R. Barnea, Francesco Ria
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1000616

KSHV Manipulates Notch Signaling by DLL4 and JAG1 to Alter Cell Cycle Genes in Lymphatic Endothelia
Cited by: 61
Author(s): Victoria Emuss, Dimitrios Lagos, Arnold Pizzey, Fiona Gratrix, Stephen Henderson, Chris Boshoff
Software Mentions: 1
Published: about 17 years ago

10.1007/s12094-021-02570-4

A new antisarcoma strategy: multisubtype heat shock protein/peptide immunotherapy combined with PD-L1 immunological checkpoint inhibitors
Cited by: 4
Author(s): H Li, Sheng Xiang, Z Wang, Hua Fu, Ming Yüan, S Liu, G Wang, Quanyi Guo
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1001013

Epigenetic Analysis of KSHV Latent and Lytic Genomes
Cited by: 219
Author(s): Zsolt Tóth, Dennis T. Maglinte, Sun Hwa Lee, Hye‐Ra Lee, Li Chin Wong, Kevin Brulois, Stacy Lee, Jonathan D. Buckley, Peter W. Laird, Víctor E. Márquez, Jae U. Jung
Software Mentions: 1
Published: about 16 years ago

10.1186/s12920-020-00799-6

Comprehensive analysis of angiogenesis-related genes and pathways in early diabetic retinopathy
Cited by: 18
Author(s): Chufeng Gu, Thashi Lhamo, Chen Zou, Chuandi Zhou, Tong Su, Deji Draga, Da Luo, Zhi Zheng, Li Yin, Qinghua Qiu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1002405

Kaposi's Sarcoma Herpesvirus microRNAs Target Caspase 3 and Regulate Apoptosis
Cited by: 108
Author(s): Guillaume Suffert, Georg Malterer, Jean Hausser, Johanna Viiliäinen, Aurélie Fender, Maud Contrant, Tomi Ivacevic, Vladimír Beneš, Frédéric Gros, Olivier Voinnet, Mihaela Zavolan, Päivi M. Ojala, Juergen Haas, Sébastien Pfeffer
Software Mentions: 1
Published: almost 15 years ago

10.1002/ctm2.493

LncRNA nuclear‐enriched abundant transcript 1 shuttled by prostate cancer cells‐secreted exosomes initiates osteoblastic phenotypes in the bone metastatic microenvironment via miR‐205‐5p/runt‐related transcription factor 2/splicing factor proline‐ and glutamine‐rich/polypyrimidine tract‐binding protein 2 axis
Cited by: 32
Author(s): Chengqiang Mo, Bin Huang, Sian Liu, Shuangjian Jiang, Shengjie Guo, Xiaopeng Mao
Software Mentions: 1
Published: about 5 years ago

10.1186/s12014-018-9200-6

Proteomic distinction of renal oncocytomas and chromophobe renal cell carcinomas
Cited by: 8
Author(s): Vanessa Drendel, Bianca Heckelmann, Christoph Schell, Lucas Kook, Martin L. Biniossek, Martin Werner, Cordula A. Jilg, Oliver Schilling
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.ppat.1002840

CD160 and PD-1 Co-Expression on HIV-Specific CD8 T Cells Defines a Subset with Advanced Dysfunction
Cited by: 129
Author(s): Yoav Peretz, Zuoli He, Yulu Shi, Bader Yassine‐Diab, Jean-Philippe Goulet, Rebeka Bordi, Ali Filali‐Mouhim, Jean-Baptiste Loubert, Mohamed El-Far, Franck P. Dupuy, Mohamed-Rachid Boulassel, Cécile Tremblay, Jean‐Pierre Routy, Nicole F. Bernard, Robert Balderas, Elias K. Haddad, Rafick‐Pierre Sékaly
Software Mentions: 1
Published: about 14 years ago

10.1186/s12014-020-09300-y

Comparative analysis of differentially abundant proteins quantified by LC–MS/MS between flash frozen and laser microdissected OCT-embedded breast tumor samples
Cited by: 2
Author(s): Lori A. Sturtz, Guisong Wang, Punit Shah, Richard Searfoss, Praveen Kumar, Jeffrey A. Hooke, J. Leigh Fantacone-Campbell, Brenda Deyarmin, Mary Lou Cutler, Rangaprasad Sarangarajan, Niven R. Narain, Hai Hu, Michael A. Kiebish, Albert J. Kovatich, Craig D. Shriver
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1003118

IRF-3, IRF-5, and IRF-7 Coordinately Regulate the Type I IFN Response in Myeloid Dendritic Cells Downstream of MAVS Signaling
Cited by: 247
Author(s): Helen M. Lazear, Alissa M. Lancaster, Courtney Wilkins, Mehul S. Suthar, Albert C. Huang, Sarah C. Vick, Lisa Clepper, Larissa B. Thackray, Margaret M. Brassil, Herbert W. Virgin, Janko Nikolich‐Žugich, Ashlee V. Moses, Michael Gale, Klaus Früh, Michael S. Diamond
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.ppat.1003098

Teleost fish mount complex clonal IgM and IgT responses in spleen upon systemic viral infection.
Cited by: 1
Author(s): Rosario Castro, Luc Jouneau, Hang-Phuong Pham, Olivier Bouchez, Véronique Giudicelli, Marie‐Paule Lefranc, Edwige Quillet, Abdenour Benmansour, Frédéric Cazals, Adrien Six, Simon Fillatreau, Oriol Sunyer, Pierre Boudinot
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.ppat.1003416

Genome-wide RNAi Screen Reveals a New Role of a WNT/CTNNB1 Signaling Pathway as Negative Regulator of Virus-induced Innate Immune Responses
Cited by: 56
Author(s): Martin Baril, Salwa Es-Saad, Laurent Chatel‐Chaix, Karin Fink, Tram N. Q. Pham, Valérie–Ann Raymond, Karine Audette, Anne-Sophie Guenier, Jean Duchaine, Marc J. Servant, Marc Bilodeau, Éric A. Cohen, Nathalie Grandvaux, Daniel Lamarre
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003441

Multifunctional Double-negative T Cells in Sooty Mangabeys Mediate T-helper Functions Irrespective of SIV Infection
Cited by: 29
Author(s): Vasudha Sundaravaradan, Ramsey A. Saleem, Luca Micci, Melanie A. Gasper, Alexandra M. Ortiz, James G. Else, Guido Silvestri, Mirko Paiardini, John D. Aitchison, Donald L. Sodora
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003799

Myeloid Dendritic Cells Induce HIV-1 Latency in Non-proliferating CD4+ T Cells
Cited by: 58
Author(s): Vanessa A. Evans, Nitasha Kumar, Ali Filali, Francesco A. Procopio, Oleg Yegorov, Jean-Philippe Goulet, Suha Saleh, Elias K. Haddad, Candida da Fonseca Pereira, Paula Ellenberg, Rafick‐Pierre Sékaly, Paul Cameron, Sharon R. Lewin
Software Mentions: 1
Published: almost 13 years ago

10.1007/s10585-012-9552-7

Nuclear LEF1/TCF4 correlate with poor prognosis but not with nuclear β-catenin in cerebral metastasis of lung adenocarcinomas
Cited by: 39
Author(s): Annalen Bleckmann, Laila Siam, Florian Klemm, Eva Rietkötter, Chr. Wegner, Frank Krämer, Tim Beißbarth, Claudia R. Binder, Christine Stadelmann, Tobias Pukrop
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12920-020-0657-6

DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation
Cited by: 64
Author(s): Ieva Rauluševičiūtė, Finn Drabløs, Morten Rye
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1004419

Leishmania donovani Infection Causes Distinct Epigenetic DNA Methylation Changes in Host Macrophages
Cited by: 109
Author(s): Alexandra K. Marr, Julia L. MacIsaac, Ruiwei Jiang, Adriana M. Airo, Michæl S. Kobor, W. Robert McMaster
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.ppat.1004542

Targeted Changes of the Cell Wall Proteome Influence Candida albicans Ability to Form Single- and Multi-strain Biofilms
Cited by: 52
Author(s): Vitor Cabral, Sadri Znaidi, Larry P. Walker, Hélène Martin-Yken, Étienne Dague, Mélanie Legrand, Keunsook Lee, Murielle Chauvel, Arnaud Firon, Tristan Rossignol, Mathias L. Richard, Carol A. Munro, Sophie Bachellier‐Bassi, Christophe d’Enfert
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.ppat.1004630

Cell Cycle-Independent Phospho-Regulation of Fkh2 during Hyphal Growth Regulates Candida albicans Pathogenesis
Cited by: 25
Author(s): Jamie A. Greig, Ian Sudbery, Jonathan P. Richardson, Julian R. Naglik, Yan Ming Wang, Peter E. Sudbery
Software Mentions: 1
Published: over 11 years ago

10.1186/s12920-021-01087-7

Integrated bioinformatics analysis of core regulatory elements involved in keloid formation
Cited by: 4
Author(s): Chuying Li, Mei-Tong Jin, Yinli Luo, Zhehu Jin, Long-Quan Pi
Software Mentions: 1
Published: about 5 years ago

10.1186/s13148-020-00894-6

Concentrations of persistent organic pollutants in maternal plasma and epigenome-wide placental DNA methylation
Cited by: 45
Author(s): Marion Ouidir, Pauline Mendola, Germaine M. Buck Louis, Kurunthachalam Kannan, Cuilin Zhang, Fasil Tekola‐Ayele
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0087740

Tolerogenic Properties of Lymphatic Endothelial Cells Are Controlled by the Lymph Node Microenvironment
Cited by: 79
Author(s): Jarish N. Cohen, Eric F. Tewalt, Sherin J. Rouhani, Erica L. Buonomo, Amber N. Bruce, Xiaojiang Xu, Stefan Bekiranov, Yang–Xin Fu, Víctor H. Engelhard
Software Mentions: 1
Published: over 12 years ago

10.18632/oncotarget.6379

Different prognostic impact of<i>STK11</i>mutations in non-squamous non-small-cell lung cancer
Cited by: 59
Author(s): Nicolas Pécuchet, Pierre Laurent‐Puig, Audrey Lupo, Antoine Legras, Marco Alifano, Karine Pallier, Audrey Didelot, Laure Gibault, Claire Danel, Pierre‐Alexandre Just, Marc Riquet, Françoise Le Pimpec-Barthes, Diane Damotte, Elizabeth Fabre, Hélène Blons
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.ppat.1005772

Spliceosome SNRNP200 Promotes Viral RNA Sensing and IRF3 Activation of Antiviral Response
Cited by: 22
Author(s): Nicolas Tremblay, Martin Baril, Laurent Chatel‐Chaix, Salwa Es-Saad, Alex Young Park, Robert K. Koenekoop, Daniel Lamarre
Software Mentions: 1
Published: about 10 years ago

10.1186/s12920-015-0103-3

Integrated genomics has identified a new AT/RT-like yet INI1-positive brain tumor subtype among primary pediatric embryonal tumors
Cited by: 14
Author(s): Donald Ming Tak Ho, Chuan Chi Shih, Muh Lii Liang, Chan Yen Tsai, Tsung Han Hsieh, Chin Han Tsai, Shih Chieh Lin, Ting Chang, Meng En Chao, Hsei Wei Wang, Tai-Tong Wong
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0198055

Construction and analysis of mRNA, miRNA, lncRNA, and TF regulatory networks reveal the key genes associated with prostate cancer
Cited by: 55
Author(s): Yun Ye, Su-Liang Li, Shengyu Wang
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0029907

Genome-Wide Analyses of Nkx2-1 Binding to Transcriptional Target Genes Uncover Novel Regulatory Patterns Conserved in Lung Development and Tumors
Cited by: 42
Author(s): Jean-Bosco Tagne, Sumeet Gupta, Adam C. Gower, Steven S. Shen, Saaket Varma, Meenakshi Lakshminarayanan, Yuxia Cao, Avrum Spira, Thomas L. Volkert, María I. Ramirez
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.ppat.1006103

Autophagy Is an Innate Mechanism Associated with Leprosy Polarization
Cited by: 42
Author(s): Bruno Jorge de Andrade Silva, Mayara Garcia de Mattos Barbosa, Priscila Ribeiro Andrade, Helen Ferreira, José Augusto da Costa Nery, Suzana Côrte-Real, Gilberto Marcelo Sperandio da Silva, Patrícia Sammarco Rosa, Mario Fabri, Euzenir Nunes Sarno, Roberta Olmo Pinheiro
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.isci.2021.102676

A human multi-cellular model shows how platelets drive production of diseased extracellular matrix and tissue invasion
Cited by: 26
Author(s): Beatrice Malacrida, Sam Nichols, Eleni Maniati, Roanne R. Jones, Robin Delanie-Smith, Reza Roozitalab, Eleanor J. Tyler, Morgan Thomas, Gina Boot, Jonas Mackerodt, Michelle Lockley, Martin M. Knight, Frances R. Balkwill, Oliver M.T. Pearce
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0189639

Genome-wide microarray analysis leads to identification of genes in response to herbicide, metribuzin in wheat leaves
Cited by: 8
Author(s): Whitney Pilcher, Hana Zandkarimi, Kelly Arceneaux, Stephen A. Harrison, Niranjan Baisakh
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0239551

Transcriptomics predicts compound synergy in drug and natural product treated glioblastoma cells
Cited by: 14
Author(s): Lavinia Lorena Pruteanu, Liliya Kopanitsa, Dezső Módos, Edgars Kletnieks, Elena I. Samarova, Andreas Bender, Leonardo D. Gomez, David Bailey
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1006676

Mycobacterium tuberculosis infection modulates adipose tissue biology
Cited by: 34
Author(s): Macarena Beigier-Bompadre, Georgina N. Montagna, Anja A. Kühl, Laura Lozza, January Weiner, Andreas Kupz, Alexis Vogelzang, Hans-Joachim Mollenkopf, Delia Löwe, Silke Bandermann, Anca Dorhoi, Volker Brinkmann, Kai Matuschewski, Stefan H. E. Kaufmann
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0111460

The TLR4 D299G and T399I SNPs Are Constitutively Active to Up-Regulate Expression of Trif-Dependent Genes
Cited by: 19
Author(s): Georgina L. Hold, Susan H. Berry, Karin A. Saunders, Janice E. Drew, Claus Mayer, Heather Brookes, Emad El-Omar, Clare E. Bryant
Software Mentions: 1
Published: almost 12 years ago

10.1186/1755-8794-6-41

Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker
Cited by: 49
Author(s): Intawat Nookaew, Kaisa Thorell, Kuntal Worah, Shugui Wang, Martin L. Hibberd, Henrik Sjövall, Sven Pettersson, Jens Nielsen, Samuel Lundin
Software Mentions: 1
Published: about 13 years ago

10.1186/1755-8794-7-13

Childhood abuse is associated with methylation of multiple loci in adult DNA
Cited by: 147
Author(s): Matthew Suderman, Nada Borghol, Jane J. Pappas, Snehal M Pinto Pereira, Marcus Pembrey, Clyde Hertzman, Chris Power, Moshe Szyf
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1007145

Non-linear hierarchy of the quorum sensing signalling pathway in bloodstream form African trypanosomes
Cited by: 34
Author(s): Lindsay McDonald, Mathieu Cayla, Alasdair Ivens, Binny M. Mony, Paula MacGregor, Eleanor Silvester, Kirsty Ross McWilliam, Keith R. Matthews
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.10949

Prognostic value of molecular events from negative surgical margin of non-small-cell lung cancer
Cited by: 7
Author(s): Bangrong Cao, Feng Li, Dongfang Lu, Yan Liu, Yu Liu, Shu Guo, Ning Han, Xiangyang Liu, Yousheng Mao, Jie He, Shujun Cheng, Yanning Gao, Kaitai Zhang
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0024717

MiR-886-3p Regulates Cell Proliferation and Migration, and Is Dysregulated in Familial Non-Medullary Thyroid Cancer
Cited by: 52
Author(s): Yin Xiong, Lisa Zhang, Alisha K. Holloway, Xiaolin Wu, Ling Su, Electron Kebebew
Software Mentions: 1
Published: about 15 years ago

10.1186/1755-8794-6-42

Gene profiling suggests a common evolution of bladder cancer subtypes
Cited by: 8
Author(s): Donna E. Hansel, Zhongfa Zhang, David Petillo, Bin Tean Teh
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12920-020-00744-7

Long non-coding RNA profiling of pediatric Medulloblastoma
Cited by: 14
Author(s): Varun Kesherwani, Mamta Shukla, Donald W. Coulter, John Sharp, Shantaram S. Joshi, Nagendra K. Chaturvedi
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.15401

The long noncoding RNA, treRNA, decreases DNA damage and is associated with poor response to chemotherapy in chronic lymphocytic leukemia
Cited by: 22
Author(s): Cecelia Miller, Amy S. Ruppert, Sydney Fobare, Timothy L. Chen, Chaomei Liu, Amy Lehman, James S. Blachly, Xiaoli Zhang, David M. Lucas, Michael R. Grever, Martin S. Tallman, Ian W. Flinn, Laura Z. Rassenti, Thomas J. Kipps, Deepa Sampath, Kevin R. Coombes, Erin Hertlein
Software Mentions: 1
Published: over 9 years ago

10.1186/s12920-021-00918-x

Integrated analysis of lncRNA–miRNA–mRNA ceRNA network and the potential prognosis indicators in sarcomas
Cited by: 15
Author(s): Lu Gao, Yu Zhao, Xuelei Ma, Ling Zhang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0243964

High-dose corticosteroid pulse therapy increases the survival rate in COVID-19 patients at risk of hyper-inflammatory response
Cited by: 37
Author(s): Miguel Ángel López Zúñiga, Aida Moreno‐Moral, Ana Ocaña-Granados, Francisco Andrés Padilla-Moreno, Alba María Castillo-Fernández, Dionisio Guillamón-Fernández, Carolina Ramírez-Sánchez, María Sánchez-Palop, Justo Martínez-Colmenero, María Amparo Pimentel-Villar, Sara Blázquez-Roselló, José Juan Moreno-Sánchez, María Ángeles López-Vílchez, Inmaculada Prior-Sánchez, Rosario Jódar-Moreno, Marı́a Ruz
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.18255

Bromodomain inhibition shows antitumoral activity in mice and human luminal breast cancer
Cited by: 21
Author(s): Montserrat Pérez-Salvia, Laia Simó-Riudalbas, Pere Llinàs‐Arias, Laura M. Roa, Fernando Setién, Marta Soler, Manuel Castro de Moura, James E. Bradner, Eva González-Suárez, Cátia Moutinho, Manel Esteller
Software Mentions: 1
Published: over 9 years ago

10.1186/s13048-021-00864-3

CXCL2-mediated ATR/CHK1 signaling pathway and platinum resistance in epithelial ovarian cancer
Cited by: 5
Author(s): Song Nie, Yicong Wan, Hui Wang, Jinhui Liu, Jing Yang, Rui Sun, Hua Meng, Xiaolin Ma, Yi Jiang, Wenjun Cheng
Software Mentions: 1
Published: about 5 years ago

10.1186/s13048-021-00794-0

Identification of potential markers for differentiating epithelial ovarian cancer from ovarian low malignant potential tumors through integrated bioinformatics analysis
Cited by: 3
Author(s): Wende Hao, Hongyu Zhao, Zhefeng Li, Jie Li, Jiahao Guo, Qi Chen, Yan Gao, Meng Ren, Xiaoting Zhao, Wentao Yue
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0056280

miR-21 Promotes Fibrogenic Epithelial-to-Mesenchymal Transition of Epicardial Mesothelial Cells Involving Programmed Cell Death 4 and Sprouty-1
Cited by: 78
Author(s): Hasse Brønnum, Ditte Caroline Andersen, Mikael Schneider, Maria Boysen Sandberg, Tilde V Eskildsen, Solveig Beck Nielsen, Raghu Kalluri, Søren Paludan Sheikh
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0107055

Lung Fibroblasts from Patients with Idiopathic Pulmonary Fibrosis Exhibit Genome-Wide Differences in DNA Methylation Compared to Fibroblasts from Nonfibrotic Lung
Cited by: 68
Author(s): Steven K. Huang, Anne M. Scruggs, Richard C. McEachin, Eric S. White, Marc Peters‐Golden
Software Mentions: 1
Published: about 12 years ago

10.1186/s13048-021-00837-6

Integrative analysis of key candidate genes and signaling pathways in ovarian cancer by bioinformatics
Cited by: 5
Author(s): Cuicui Dong, Xiaohui Tian, Fucheng He, Jiayi Zhang, Xiaohui Cui, Qiaojun He, Ping Si, Yongming Shen
Software Mentions: 1
Published: over 5 years ago

10.1186/s13048-018-0399-7

Deregulation of the spindle assembly checkpoint is associated with paclitaxel resistance in ovarian cancer
Cited by: 25
Author(s): Taryne Chong, Amila Sarac, Cindy Q. Yao, Linda M. Liao, Nicola Lyttle, Paul C. Boutros, John M.S. Bartlett, Melanie Spears
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0011561

Gene Network Disruptions and Neurogenesis Defects in the Adult Ts1Cje Mouse Model of Down Syndrome
Cited by: 45
Author(s): Chelsee Hewitt, King-Hwa Ling, Tobias D. Merson, Ken M. Simpson, Matthew E. Ritchie, Sarah L. King, Melanie April Pritchard, Gordon K. Smyth, Tim Thomas, Hamish S. Scott, Anne K. Voss
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0089839

Association of Childhood Chronic Physical Aggression with a DNA Methylation Signature in Adult Human T Cells
Cited by: 74
Author(s): Nadine Provençal, Matthew Suderman, Claire Guillemin, Frank Vitaro, Sylvana M. Côté, Michael Hallett, Richard E. Tremblay, Moshe Szyf
Software Mentions: 1
Published: over 12 years ago

10.1186/1757-2215-6-24

Small SSEA-4-positive cells from human ovarian cell cultures: related to embryonic stem cells and germinal lineage?
Cited by: 37
Author(s): Irma Virant‐Klun, Martin Štimpfel, Branko Cvjetičanin, Eda Vrtačnik-Bokal, Thomas Skutella
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0020408

ALTERED MERISTEM PROGRAM 1 Is involved in Development of Seed Dormancy in Arabidopsis
Cited by: 27
Author(s): J. Griffiths, José M. Barrero, Jennifer Taylor, Chris A. Helliwell, Frank Gubler
Software Mentions: 1
Published: over 15 years ago

10.1186/1757-2215-6-88

Gene-gene interaction network analysis of ovarian cancer using TCGA data
Cited by: 18
Author(s): Huanchun Ying, Jing Lv, Tianshu Ying, Shanshan Jin, Junfeng Shao, Lili Wang, Huibin Xu, Bin Yuan, Qing Yang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0173822

In silico search for modifier genes associated with pancreatic and liver disease in Cystic Fibrosis
Cited by: 14
Author(s): Pascal Trouvé, Emmanuelle Génin, Claude Férec
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-47246-w

GRP78 translocation to the cell surface and O-GlcNAcylation of VE-Cadherin contribute to ER stress-mediated endothelial permeability
Cited by: 23
Author(s): Raji Rajesh Lenin, Peter G. Nagy, Kumar Abhiram Jha, Rajashekhar Gangaraju
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0174718

T cell subtypes and reciprocal inflammatory mediator expression differentiate P. falciparum memory recall responses in asymptomatic and symptomatic malaria patients in southeastern Haiti
Cited by: 6
Author(s): Jason Lehmann, Joseph J. Campo, Micheline Cicéron, C. P. Raccurt, Jacques Boncy, Valery E. Madsen Beau De Rochars, Anthony P. Cannella
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-47245-x

Global view of the RAF-MEK-ERK module and its immediate downstream effectors
Cited by: 10
Author(s): Cristina Costa Santini, James Longden, Erwin M. Schoof, Simpson Cd, Grace R. Jeschke, Pau Creixell, Jinho Kim, Xuewei Wu, Benjamin E. Turk, Neal Rosen, Poulikos I. Poulikakos, Rune Linding
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0122290

Developmental Exposure to Estrogen Alters Differentiation and Epigenetic Programming in a Human Fetal Prostate Xenograft Model
Cited by: 17
Author(s): Camelia M. Saffarini, Elizabeth V. McDonnell-Clark, Ali Amin, Susan M. Huse, Kim Boekelheide
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-019-47581-y

Effect of immunosuppression in miRNAs from extracellular vesicles of colorectal cancer and their influence on the pre-metastatic niche
Cited by: 11
Author(s): Valeria Tubita, Joan Seguí-Barber, Juan José Lozano, Elisenda Bañón-Maneus, Jordi Rovira, David Cucchiari, Daniel Moya-Rull, Federico Oppenheimer, Hernando del Portillo, Josep M. Campistol, Fritz Diekmann, María José Ramírez-Bajo, Ignacio Revuelta
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0168669

Claudin-Low Breast Cancer; Clinical &amp; Pathological Characteristics
Cited by: 111
Author(s): Kay Dias, Anna Dvorkin‐Gheva, Robin Hallett, Ying Wu, John A. Hassell, Gregory R. Pond, Mark Levine, Timothy J. Whelan, Anita Bane
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-019-47774-5

Comprehensive Proteomic Analysis Reveals Intermediate Stage of Non-Lesional Psoriatic Skin and Points out the Importance of Proteins Outside this Trend
Cited by: 23
Author(s): Edit Szél, Renáta Bozó, Éva Hunyadi‐Gulyás, Máté Manczinger, Kornélia Szabó, Lajos Kemény, Zsuzsanna Bata‐Csörgő, Gergely Groma
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.6548

Combinatorial drug screening and molecular profiling reveal diverse mechanisms of intrinsic and adaptive resistance to BRAF inhibition in V600E BRAF mutant melanomas
Cited by: 19
Author(s): Devin G. Roller, Brian J. Capaldo, Stefan Bekiranov, Aaron J. Mackey, Mark R. Conaway, Emanuel F. Petricoin, Daniel Gioeli, Michael J. Weber
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-019-48276-0

Sinus node-like pacemaker mechanisms regulate ectopic pacemaker activity in the adult rat atrioventricular ring
Cited by: 10
Author(s): Sunil Jit R. J. Logantha, Sanjay Kharche, Y. Zhang, Andrew Atkinson, Guoliang Hao, Mark R. Boyett, Halina Dobrzynski
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0184399

PreImplantation Factor in endometriosis: A potential role in inducing immune privilege for ectopic endometrium
Cited by: 8
Author(s): Marco Sbracia, Brett McKinnon, F. Scarpellini, Daniela Marconi, Gabriele Rossi, Cedric Simmilion, Michael D. Mueller, Eytan R. Barnea, Martin Mueller
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0108267

tBRD-1 Selectively Controls Gene Activity in the Drosophila Testis and Interacts with Two New Members of the Bromodomain and Extra-Terminal (BET) Family
Cited by: 14
Author(s): Ina Theofel, Marek Bartkuhn, Tim Hundertmark, Thomas Boettger, Stefanie Gärtner, Katja Leser, Stephan Awe, Michael Schipper, Renate Renkawitz‐Pohl, Christina Rathke
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0078102

The Transcriptional Repressor TupA in Aspergillus niger Is Involved in Controlling Gene Expression Related to Cell Wall Biosynthesis, Development, and Nitrogen Source Availability
Cited by: 19
Author(s): Doreen Schachtschabel, Mark Arentshorst, Benjamin Nitsche, Sam Morris, Kristian Fog Nielsen, Cees A. M. J. J. van den Hondel, Frans M. Klis, Arthur F. J. Ram
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0112786

Whole Blood Transcriptional Profiling Reveals Deregulation of Oxidative and Antioxidative Defence Genes in Myelofibrosis and Related Neoplasms. Potential Implications of Downregulation of Nrf2 for Genomic Instability and Disease Progression
Cited by: 55
Author(s): Hans Carl Hasselbalch, Mads Thomassen, Caroline Hasselbalch Riley, Lasse Kjær, Thomas Stauffer Larsen, Morten Krogh Jensen, Ole Weis Bjerrum, Torben A. Kruse, Vibe Skov
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0186855

Enhanced chromatin accessibility of the dosage compensated Drosophila male X-chromosome requires the CLAMP zinc finger protein
Cited by: 28
Author(s): Jennifer A. Urban, Guray Kuzu, Sarah K. Bowman, Benjamin S. Scruggs, Telmo Henriques, Robert E. Kingston, Karen Adelman, Michael Y. Tolstorukov, Erica Larschan
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0078302

Multi-TGDR: A Regularization Method for Multi-Class Classification in Microarray Experiments
Cited by: 16
Author(s): Suyan Tian, Mayte Suárez‐Fariñas
Software Mentions: 1
Published: almost 13 years ago

10.1038/s41598-019-48816-8

Transcriptomic and functional analyses of 3D placental extravillous trophoblast spheroids
Cited by: 16
Author(s): Michael K. Wong, Mishquatul Wahed, Sarah A. Shawky, Anna Dvorkin‐Gheva, Sandeep Raha
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.6667

In silico pathway analysis in cervical carcinoma reveals potential new targets for treatment
Cited by: 18
Author(s): Peter van Dam, Pieter-Jan H.H. van Dam, Christian Rolfo, Marco Giallombardo, Christophe Van Berckelaer, Xuan Bich Trinh, Sevilay Altıntaş, Manon Huizing, Κonstantina Papadimitriou, Wiebren Tjalma, Steven Van Laere
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0184976

Lactobacillus paracasei feeding improves immune control of influenza infection in mice
Cited by: 69
Author(s): Nouria Belkacem, Nicolas Serafini, Richard Wheeler, Muriel Derrien, Lilia Boucinha, Aurélie Couesnon, Nadine Cerf–Bensussan, Ivo Gomperts Boneca, James P. Di Santo, Muhamed-Kheir Taha, Raphaëlle Bourdet‐Sicard
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0090272

Long Non-Coding RNA Expression Profiles in Hereditary Haemorrhagic Telangiectasia
Cited by: 20
Author(s): Pernille Mathiesen Tørring, Martin Jakob Larsen, Anette Drøhse Kjeldsen, Lilian Bomme Ousager, Qihua Tan, Klaus Brusgaard
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0158774

RIPK3 Is Largely Dispensable for RIG-I-Like Receptor- and Type I Interferon-Driven Transcriptional Responses to Influenza A Virus in Murine Fibroblasts
Cited by: 6
Author(s): Shoko Nogusa, Michael Slifker, Justin P. Ingram, Roshan J. Thapa, Siddharth Balachandran
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0184095

The transcriptional landscape of Rhizoctonia solani AG1-IA during infection of soybean as defined by RNA-seq
Cited by: 15
Author(s): Tanya Copley, Raj Duggavathi, Suha Jabaji
Software Mentions: 1
Published: about 9 years ago

10.1186/s12920-020-00795-w

Identification of key genes and functions of circulating tumor cells in multiple cancers through bioinformatic analysis
Cited by: 8
Author(s): Yawen Guan, Fangshi Xu, Yiyuan Wang, Jie Tian, Ziyan Wan, Zhenlong Wang, Tie Chong
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0029083

A Temporal -omic Study of Propionibacterium freudenreichii CIRM-BIA1T Adaptation Strategies in Conditions Mimicking Cheese Ripening in the Cold
Cited by: 24
Author(s): Marion Dalmasso, Julie Aubert, Valérie Briard‐Bion, Victoria Chuat, Stéphanie-Marie Deutsch, Sergine Even, Hélène Falentin, Gwénaël Jan, Julien Jardin, Marie-Bernadette Maillard, Sandrine Parayre, Michel Piot, Jarna Tanskanen, Anne Thierry
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0024536

Expression of MicroRNAs in the Stem Cell Niche of the Adult Mouse Incisor
Cited by: 34
Author(s): Andrew H. Jheon, Chunying Li, Timothy Wen, Fréderic Michon, Ophir D. Klein
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2164-9-376

Novel functional view of the crocidolite asbestos-treated A549 human lung epithelial transcriptome reveals an intricate network of pathways with opposing functions
Cited by: 23
Author(s): Joan M. Hevel, Laura C Olson-Buelow, Balasubramanian Ganesan, John R. Stevens, Jared P Hardman, Ann E. Aust
Software Mentions: 1
Published: almost 19 years ago