Ecosyste.ms: Papers

10.1371/journal.pone.0044609

In Vivo Functional Requirement of the Mouse Ifitm1 Gene for Germ Cell Development, Interferon Mediated Immune Response and Somitogenesis
Cited by: 10
Author(s): Ingeborg Klymiuk, Lukas Kenner, Thure Adler, Dirk H. Busch, Auke Boersma, Martin Irmler, Valérie Gailus‐Durner, Helmut Fuchs, Nicole R. Leitner, Mathias Müller, Ralf Kühn, Michaela Schlederer, Irina Treise, Martin Hrabé de Angelis, Johannes Beckers
Software Mentions: 1
Published: about 12 years ago

10.1016/j.devcel.2018.10.026

Oxidative Stress in Cells with Extra Centrosomes Drives Non-Cell-Autonomous Invasion
Cited by: 89
Author(s): Teresa Arnandis, Pedro T. Monteiro, Sophie D. Adams, Victoria L. Bridgeman, Vinothini Rajeeve, Emanuela Gadaleta, Jacek Marzec, Claude Chelala, Ilaria Malanchi, Pedro R. Cutillas, Susana A. Godinho
Software Mentions: 1
Published: about 6 years ago

10.1007/s11357-014-9648-x

Genome-wide age-related changes in DNA methylation and gene expression in human PBMCs
Cited by: 134
Author(s): Wilma T. Steegenga, Mark V. Boekschoten, Carolien Lute, Guido Hooiveld, Philip J. de Groot, Tiffany Morris, Andrew E. Teschendorff, Lee M. Butcher, Stephan Beck, Michael Müller
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-018-28168-5

Identification of novel ΔNp63α-regulated miRNAs using an optimized small RNA-Seq analysis pipeline
Cited by: 5
Author(s): Suraj Sakaram, Michael P. Craig, Natasha T. Hill, Amjad A. Aljagthmi, Christian M. Garrido, Oleg Paliy, Michael Bottomley, Michael L. Raymer, Madhavi Kadakia
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/6015473

Comprehensive Analysis of RNA Expression Profile Identifies Hub miRNA-circRNA Interaction Networks in the Hypoxic Ischemic Encephalopathy
Cited by: 1
Author(s): Wei Lin, Xia Li, Limin Wang, Yanyan Song, Hongmei Dong
Software Mentions: 1
Published: about 3 years ago

10.1155/2020/3651051

In Silico Analysis Identifies Differently Expressed lncRNAs as Novel Biomarkers for the Prognosis of Thyroid Cancer
Cited by: 22
Author(s): Yuansheng Rao, Haiying Liu, Xiaojuan Yan, Jianhong Wang
Software Mentions: 1
Published: over 4 years ago

10.1042/BSR20193823

Identification of novel biomarkers and candidate small molecule drugs in rheumatoid arthritis and osteoarthritis based on bioinformatics analysis of high-throughput data
Cited by: 9
Author(s): Bin Zuo, Junfeng Zhu, Fei Xiao, Chenglong Wang, Yun Shen, Xiao Chen
Software Mentions: 1
Published: almost 4 years ago

10.1155/2021/5799348

Metabolic Analysis of Potential Key Genes Associated with Systemic Lupus Erythematosus Using Liquid Chromatography-Mass Spectrometry
Cited by: 1
Author(s): Li Zeng, Nian Chen, Junlin Liao, Xu Shen, Shenghua Song, Feng Wang
Software Mentions: 1
Published: about 3 years ago

10.1186/s12885-019-5838-3

Novel significant stage-specific differentially expressed genes in hepatocellular carcinoma
Cited by: 52
Author(s): Arjun Sarathi, Ashok Palaniappan
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-016-2355-5

Progesterone receptor blockade in human breast cancer cells decreases cell cycle progression through G2/M by repressing G2/M genes
Cited by: 12
Author(s): Susan E. Clare, Akash Gupta, Mi Ran Choi, Manish Ranjan, Oukseub Lee, Jun Wang, David Ivancic, Julie Kim, Seema A. Khan
Software Mentions: 1
Published: over 8 years ago

10.1242/dev.122952

Two Forkhead transcription factors regulate cardiac progenitor specification by controlling the expression of receptors of the fibroblast growth factor and Wnt signaling pathways
Cited by: 10
Author(s): Shaad M. Ahmad, P. Bhattacharyya, Neal Jeffries, Stephen S. Gisselbrecht, Alan M. Michelson
Software Mentions: 1
Published: almost 10 years ago

10.1242/dev.100487

A single allele of <i>Hdac2</i> but not <i>Hdac1</i> is sufficient for normal mouse brain development in the absence of its paralog
Cited by: 71
Author(s): Astrid Hagelkrüys, Sabine Lagger, Julia Krahmer, Alexandra Leopoldi, Matthias Artaker, Oliver Pusch, Jürgen Zezula, Simon Weissmann, Yunyun Xie, Christian Schöfer, Michaela Schlederer, Gerald Brosch, Patrick Matthias, Jim Selfridge, Hans Lassmann, Juergen A. Knoblich, Christian Seiser
Software Mentions: 1
Published: almost 11 years ago

10.1242/dev.136465

RBOH-mediated ROS production facilitates lateral root emergence in Arabidopsis
Cited by: 134
Author(s): Beata Orman-Ligeza, Boris Parizot, Riet De Rycke, Ana Fernandez, Ellie Himschoot, Frank Van Breusegem, Malcolm J. Bennett, Claire Périlleux, Tom Beeckman, Xavier Draye
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12885-018-4251-7

Comparative analysis of histologically classified oligodendrogliomas reveals characteristic molecular differences between subgroups
Cited by: 15
Author(s): Chris Lauber, Barbara Klink, Michael Seifert
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-020-01407-0

Neutrophil serine protease 4 is required for mast cell-dependent vascular leakage
Cited by: 4
Author(s): Andrew P. AhYoung, Sterling Eckard, Alvin Gogineni, Hongkang Xi, Shuei Liong Lin, Stefan Gerhardy, Christian L. Cox, Qui Phung, Jason A. Hackney, Anand Kumar Katakam, Mike Reichelt, Patrick Caplazi, Paolo Manzanillo, Juan Zhang, Merone Roose‐Girma, Lucinda Tam, Robert J. Newman, Aditya Murthy, Robby M. Weimer, Jennie R. Lill, Wyne P. Lee, Michele A. Grimbaldeston, Daniel Kirchhofer, Menno van Lookeren Campagne
Software Mentions: 1
Published: about 4 years ago

10.1242/dev.168161

Transcriptionally dynamic progenitor populations organised around a stable niche drive axial patterning
Cited by: 43
Author(s): Filip J. Wymeersch, Stavroula Skylaki, Yali Huang, Julia A. Watson, Constantinos Economou, Carylyn Marek-Johnston, Simon R. Tomlinson, Valerie Wilson
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-28563-y

Fatty liver is associated with blood pathways of inflammatory response, immune system activation and prothrombotic state in Young Finns Study
Cited by: 10
Author(s): Tuukka Taipale, Ilkka Seppälä, Emma Raitoharju, Nina Mononen, Leo-Pekka Lyytikäinen, Thomas Illig, Mélanie Waldenberger, Markus Juonala, Nina Hutri‐Kähönen, Niku Oksala, Mika Kähönen, Olli T. Raitakari, Terho Lehtimäki
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29107-0

Differentially Methylated Genes in Saliva are linked to Childhood Stress
Cited by: 52
Author(s): Ligia A. Papale, Leslie J. Seltzer, Andy Madrid, Seth D. Pollak, Reid S. Alisch
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29593-2

Mediation analysis reveals common mechanisms of RUNX1 point mutations and RUNX1/RUNX1T1 fusions influencing survival of patients with acute myeloid leukemia
Cited by: 9
Author(s): Roman Hornung, Vindi Jurinović, Aarif M.N. Batcha, Stefanos A. Bamopoulos, Maja Rothenberg‐Thurley, Susanne Amler, Maria Cristina Sauerland, Wolfgang E. Berdel, Bernhard Wörmann, Stefan K. Bohlander, Jan Braess, Wolfgang Hiddemann, Sören Lehmann, Sylvain Mareschal, Karsten Spiekermann, Klaus H. Metzeler, Tobias Herold, Anne‐Laure Boulesteix
Software Mentions: 1
Published: over 6 years ago

10.1007/s00125-021-05427-1

IGFBP-1 expression is reduced in human type 2 diabetic glomeruli and modulates β1-integrin/FAK signalling in human podocytes
Cited by: 15
Author(s): Abigail C Lay, Lorna J Hale, Holly Stowell-Connolly, Robert J P Pope, Viji Nair, Wenjun Ju, Eva Márquez, Ruth Rollason, Jennifer A. Hurcombe, Bryony Hayes, Timothy Roberts, Lawrence Gillam, Jonathan Allington, Robert G. Nelson, Matthias Kretzler, Jeff M.P. Holly, Claire M Perks, Craig A. McArdle, Gavin I. Welsh, Richard J M Coward
Software Mentions: 1
Published: over 3 years ago

10.1042/BSR20201713

Identification of biomarkers associated with synovitis in rheumatoid arthritis by bioinformatics analyses
Cited by: 5
Author(s): Zhaoyan Li, Meng Xu, Ronghang Li, Zhe Zhu, Yuzhe Liu, Zhenwu Du, Guizhen Zhang, Yang Song
Software Mentions: 1
Published: about 4 years ago

10.1186/s12885-020-07184-7

Low dose environmental radon exposure and breast tumor gene expression
Cited by: 5
Author(s): Cheng Peng, Natalie DuPré, Trang VoPham, Yujing J. Heng, Gabrielle M. Baker, Christopher A. Rubadue, Kimberly Glass, Abhijeet R. Sonawane, Oana A. Zeleznik, Peter Kraft, Susan E. Hankinson, A. Heather Eliassen, Jaime E. Hart, Francine Laden, Rulla M. Tamimi
Software Mentions: 1
Published: over 4 years ago

10.1186/s12885-016-2539-z

Efficient generation of patient-matched malignant and normal primary cell cultures from clear cell renal cell carcinoma patients: clinically relevant models for research and personalized medicine
Cited by: 21
Author(s): Nazleen Lobo, Craig Gedye, Anthony J. Apostoli, Kevin R. Brown, Joshua Paterson, Natalie Stickle, Michael Robinette, Neil Fleshner, Robert J. Hamilton, Girish S. Kulkarni, Alexandre R. Zlotta, Andrew Evans, Antonio Finelli, Jason Moffat, Michael A.S. Jewett, Laurie Ailles
Software Mentions: 1
Published: over 8 years ago

10.1186/s13104-021-05635-3

Integrated microRNA and mRNA gene expression in peripheral blood mononuclear cells in response to acute psychosocial stress: a repeated-measures within-subject pilot study
Cited by: 1
Author(s): Magdalena Jurkiewicz, Anett Mueller-Alcazar, Dirk Moser, Indralatha Jayatilaka, Anatoly Mikhailik, Jamie Ferri, Nia Fogelman, Turhan Canli
Software Mentions: 1
Published: over 3 years ago

10.1186/s12967-020-02652-x

Extracellular vesicle-encapsulated microRNA-424 exerts inhibitory function in ovarian cancer by targeting MYB
Cited by: 20
Author(s): Ping Li, Hongyan Xin, Lili Lu
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12885-018-4852-1

Development of acquired resistance to lapatinib may sensitise HER2-positive breast cancer cells to apoptosis induction by obatoclax and TRAIL
Cited by: 17
Author(s): Alex J. Eustace, Neil T. Conlon, Martina S.J. McDermott, Brigid C. Browne, Patrick C. O’Leary, Frankie A. Holmes, Virginia Espina, Lance A. Liotta, Joyce O’Shaughnessy, Clair Gallagher, Lorraine O’Driscoll, Sweta Rani, Stephen F. Madden, Neil A. O’Brien, Charles Ginther, Dennis J. Slamon, Naomi Walsh, William M. Gallagher, Radosław Zagożdżon, R. William G. Watson, Norma O’Donovan, John Crown
Software Mentions: 1
Published: about 6 years ago

10.3390/life11040320

Long Noncoding RNA NEAT1 as a Potential Candidate Biomarker for Prostate Cancer
Cited by: 6
Author(s): Diana Nițușcă, Anca Marcu, Alis Dema, Loredana Bălăcescu, Ovidiu Bălăcescu, Răzvan Bardan, A. Cumpanas, Ioan Ovidiu Sîrbu, Bogdan Petruţ, Edward Șeclăman, Cătălin Marian
Software Mentions: 1
Published: over 3 years ago

10.3390/diagnostics10030177

Predictive Analyses of Prognostic-Related Immune Genes and Immune Infiltrates for Glioblastoma
Cited by: 15
Author(s): Ping Liang, Yi Chai, He Zhao, Guihuai Wang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-30313-z

The Overlap of Lung Tissue Transcriptome of Smoke Exposed Mice with Human Smoking and COPD
Cited by: 17
Author(s): Ma’en Obeidat, Anna Dvorkin‐Gheva, Xuan Li, Yohan Bossé, Corry‐Anke Brandsma, David C. Nickle, Philip M. Hansbro, Rosa Faner, Àlvar Agustí, Peter D. Paré, Martin R. Stämpfli, Don D. Sin
Software Mentions: 1
Published: over 6 years ago

10.3390/md19020052

Marine Seagrass Extract of Thalassia testudinum Suppresses Colorectal Tumor Growth, Motility and Angiogenesis by Autophagic Stress and Immunogenic Cell Death Pathways
Cited by: 11
Author(s): Ivones Hernández-Balmaseda, Idania Rodeiro Guerra, Ken Declerck, José Alfredo Herrera Isidrón, Claudina Pérez-Novo, Guy Van Camp, Olivier De Wever, Kethia González, Mayrel Labrada, Adriana Carr, Geovanni Dantas-Cassali, Diego Carlos dos Reis, Liván Delgado-Roche, Roberto Rafael Nuñez, René Delgado Hernández, Miguel D. Fernández, Miriam T. Paz-Lopes, Wim Vanden Berghe
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12885-021-08591-0

Integration of RNA-Seq and proteomics data identifies glioblastoma multiforme surfaceome signature
Cited by: 13
Author(s): Saiful Effendi Syafruddin, Wan Fahmi Wan Mohamad Nazarie, Nurshahirah Ashikin Moidu, Bee Hong Soon, M. Aiman Mohtar
Software Mentions: 1
Published: over 3 years ago

10.1155/2021/7253633

Expression of Four Autophagy-Related Genes Accurately Predicts the Prognosis of Gastrointestinal Cancer in Asian Patients
Cited by: 3
Author(s): Hua Tang, Yan Liang, Shanshan Xu, Rong Xia, Jiacheng Shen, Yuxin Zhang, Xing Gong, Yang Gi Min, Di Zhang, Tai-Yun Zhao, Shoulin Wang, Yi Zhang, Chao Wang
Software Mentions: 1
Published: about 3 years ago

10.1523/ENEURO.0040-17.2017

Histone Hypervariants H2A.Z.1 and H2A.Z.2 Play Independent and Context-Specific Roles in Neuronal Activity-Induced Transcription of<i>Arc/Arg3.1</i>and Other Immediate Early Genes
Cited by: 37
Author(s): Carissa J. Dunn, Pushpita Sarkar, Emma R. Bailey, Shannon Farris, Mei Zhao, James M. Ward, Serena M. Dudek, Ramendra N. Saha
Software Mentions: 1
Published: over 7 years ago

10.1007/s00401-019-02120-x

Antibody signatures in patients with histopathologically defined multiple sclerosis patterns
Cited by: 11
Author(s): Lidia Stork, David Ellenberger, Klemens Ruprecht, Markus Reindl, Tim Beißbarth, Tim Friede, Tania Kümpfel, Lisa Ann Gerdes, Mareike Gloth, Thomas Liman, Friedemann Paul, Wolfgang Brück, Imke Metz
Software Mentions: 1
Published: almost 5 years ago

10.1155/2016/3650909

Toward Noninvasive Diagnosis of IgA Nephropathy: A Pilot Urinary Metabolomic and Proteomic Study
Cited by: 19
Author(s): Michaela Neprašová, Dita Maixnerová, Jan Novák, Colin Reily, Bruce A. Julian, Jan Boron, Petr Novotný, Miloslav Suchánek, Vladimı́r Tesař, Petr Kačer
Software Mentions: 1
Published: about 8 years ago

10.1186/s12885-019-5927-3

Estimation of immune cell content in tumor using single-cell RNA-seq reference data
Cited by: 28
Author(s): Xiaoqing Yu, Yian Ann Chen, José R. Conejo-Garcia, Christine H. Chung, Xuefeng Wang
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/4129993

Network Pharmacology Reveals That Resveratrol Can Alleviate COVID-19-Related Hyperinflammation
Cited by: 16
Author(s): Zijian Xiao, Qing Ye, Xiaoling Duan, Tao Xiang
Software Mentions: 1
Published: about 3 years ago

10.1038/s42003-021-02273-0

Protein phosphatase 1 regulates atypical mitotic and meiotic division in Plasmodium sexual stages
Cited by: 17
Author(s): Mohammad Zeeshan, Rajan Kumar Pandey, Amit Kumar Subudhi, David J. P. Ferguson, Gursimran Kaur, Ravish Rashpa, Raushan Nugmanova, Declan Brady, Andrew R. Bottrill, Sue Vaughan, Mathieu Brochet, Mathieu Bollen, Arnab Pain, Anthony A. Holder, David S. Guttery, Rita Tewari
Software Mentions: 1
Published: over 3 years ago

10.1186/s12885-021-08637-3

Dysregulated paired related homeobox 1 impacts on hepatocellular carcinoma phenotypes
Cited by: 0
Author(s): Weronika Piorońska, Zeribe C. Nwosu, Mei Han, Michael Büttner, Matthias Ebert, Steven Dooley, Christoph Meyer
Software Mentions: 1
Published: about 3 years ago

10.1038/s42003-020-01586-w

Trade-offs between sperm viability and immune protein expression in honey bee queens (Apis mellifera)
Cited by: 23
Author(s): Alison McAfee, Abigail Chapman, Jeffery S. Pettis, Leonard J. Foster, David R. Tarpy
Software Mentions: 1
Published: almost 4 years ago

10.1155/2020/8847635

A Novel Gene Signature to Predict Survival Time and Incident Ventricular Arrhythmias in Patients with Dilated Cardiomyopathy.
Cited by: 1
Author(s): Chenliang Ge, Yan He
Software Mentions: 1
Published: about 4 years ago

10.6061/clinics/2017(10)03

Identification of the difference in the pathogenesis in heart failure arising from different etiologies using a microarray dataset
Cited by: 7
Author(s): Guodong Yang, Shuping Chen, Aiqun Ma, Jun Lü, Tingzhong Wang
Software Mentions: 1
Published: almost 8 years ago

10.1007/s12094-021-02570-4

A new antisarcoma strategy: multisubtype heat shock protein/peptide immunotherapy combined with PD-L1 immunological checkpoint inhibitors
Cited by: 4
Author(s): H Li, Sheng Xiang, Z Wang, Hua Fu, Ming Yüan, S Liu, G Wang, Quanyi Guo
Software Mentions: 1
Published: over 3 years ago

10.1155/2018/9369358

Expression of Pentose Phosphate Pathway-Related Proteins in Breast Cancer
Cited by: 30
Author(s): Jong Myung Choi, Eun Sol Kim, Ja Seung Koo
Software Mentions: 1
Published: almost 7 years ago

10.1155/2019/2407067

ELL2 Is Downregulated and Associated with Galactose-Deficient IgA1 in IgA Nephropathy
Cited by: 1
Author(s): Youxia Liu, Jie Zheng, Na Zhao, Junya Jia, Tiekun Yan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0086490

Genome and Transcriptome Analysis of the Basidiomycetous Yeast Pseudozyma antarctica Producing Extracellular Glycolipids, Mannosylerythritol Lipids
Cited by: 34
Author(s): Tomotake Morita, Hideaki Koike, Hiroko Hagiwara, Emi Ito, Masayuki Machida, Shun Sato, Hiroshi Habe, Daï Kitamoto
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-15-829

Profiling of the embryonic Atlantic halibut (Hippoglossus hippoglossus L.) transcriptome reveals maternal transcripts as potential markers of embryo quality
Cited by: 29
Author(s): Maren Mommens, Jorge M.O. Fernandes, Knut Erik Tollefsen, Ian A. Johnston, Igor Babiak
Software Mentions: 1
Published: about 10 years ago

10.1155/2018/1590465

Microarray Analysis of the Molecular Mechanism Involved in Parkinson’s Disease
Cited by: 13
Author(s): Cheng Tan, Xiaoyang Liu, Jiajun Chen
Software Mentions: 1
Published: almost 7 years ago

10.1155/2021/8889569

Differentially Expressed Circular RNA Profile in an Intracranial Aneurysm Group Compared with a Healthy Control Group
Cited by: 8
Author(s): Yonggang Ma, Baoqing Zhang, Dong Zhang, Shuo Wang, Maogui Li, Jizong Zhao
Software Mentions: 1
Published: almost 4 years ago

10.1242/dmm.027953

Characterization of <i>Drosophila saposin-related</i> mutants as a model for lysosomal sphingolipid storage diseases
Cited by: 11
Author(s): Julia Sellin, Heike Schulze, Marie Paradis, Dominic Gosejacob, Cyrus Papan, Andrej Shevchenko, Olympia Psathaki, Achim Paululat, Melanie Thielisch, Konrad Sandhoff, Michael Hoch
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12872-020-01701-z

Investigation of the underlying genes and mechanism of familial hypercholesterolemia through bioinformatics analysis
Cited by: 7
Author(s): Dinghui Wang, Bin Liu, Tianhua Xiong, Wenlong Yu, Sheng Qiang
Software Mentions: 1
Published: about 4 years ago

10.1242/dmm.029678

Pumilio2 deficient mice show a predisposition for epilepsy
Cited by: 39
Author(s): Philipp Follwaczny, Rico Schieweck, Therese Riedemann, Antonia Demleitner, Tobias Straub, Anna H. Klemm, Martin Bilban, Bernd Sutor, Bastian Popper, Michael Kiebler
Software Mentions: 1
Published: almost 8 years ago

10.1242/dmm.022277

Urine-sample-derived human induced pluripotent stem cells as a model to study PCSK9-mediated autosomal dominant hypercholesterolemia
Cited by: 30
Author(s): Karim Si‐Tayeb, Salam Idriss, Benoite Champon, Amandine Caillaud, Matthieu Pichelin, Lucie Arnaud, Patricia Lemarchand, Cédric Le May, Kazem Zibara, Bertrand Cariou
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2407-14-54

A panel of genes methylated with high frequency in colorectal cancer
Cited by: 132
Author(s): Susan M. Mitchell, Jason P. Ross, Horace R. Drew, Thu Ho, Glenn Brown, Neil F. W. Saunders, Konsta Duesing, Michael Buckley, Robert Dunne, Iain Beetson, Keith N. Rand, Aidan McEvoy, Melissa L. Thomas, Rohan T. Baker, David Wattchow, Graeme P. Young, Trevor Lockett, Susanne K. Pedersen, Lawrence C. LaPointe, Peter L. Molloy
Software Mentions: 1
Published: almost 11 years ago

10.3390/nu8090543

Eicosapentaenoic and Docosahexaenoic Acid-Enriched High Fat Diet Delays Skeletal Muscle Degradation in Mice
Cited by: 10
Author(s): Nikul K Soni, Alastair B. Ross, Nathalie Scheers, Otto Savolainen, Intawat Nookaew, Britt G. Gabrielsson, Ann‐Sofie Sandberg
Software Mentions: 1
Published: about 8 years ago

10.1111/eva.12394

Adaptation to climate change: trade‐offs among responses to multiple stressors in an intertidal crustacean
Cited by: 52
Author(s): Morgan W. Kelly, Melissa B. DeBiasse, Vidal A. Villela, Hope L. Roberts, Colleen F. Cecola
Software Mentions: 1
Published: over 8 years ago

10.1002/ctm2.493

LncRNA nuclear‐enriched abundant transcript 1 shuttled by prostate cancer cells‐secreted exosomes initiates osteoblastic phenotypes in the bone metastatic microenvironment via miR‐205‐5p/runt‐related transcription factor 2/splicing factor proline‐ and glutamine‐rich/polypyrimidine tract‐binding protein 2 axis
Cited by: 32
Author(s): Chengqiang Mo, Bin Huang, Sian Liu, Shuangjian Jiang, Shengjie Guo, Xiaopeng Mao
Software Mentions: 1
Published: over 3 years ago

10.1042/BSR20180775

Analysis of anti-osteoporosis function of chlorogenic acid by gene microarray profiling in ovariectomy rat model
Cited by: 21
Author(s): Min Jun, Zhen Yuan, Qiao Zhang, Sijian Lin, Kai Wang, Jun Luo
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-31027-y

A response prediction model for taxane, cisplatin, and 5-fluorouracil chemotherapy in hypopharyngeal carcinoma
Cited by: 12
Author(s): Qi Zhong, Jugao Fang, Zhigang Huang, Yifan Yang, Meng Lian, Honggang Liu, Yixiang Zhang, Junhui Ye, Xinjie Hui, Yejun Wang, Ying Ying, Qing Zhang, Yingduan Cheng
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0003279

Single-Species Microarrays and Comparative Transcriptomics
Cited by: 17
Author(s): Frédéric J. J. Chain, Dora Ilieva, Ben Evans
Software Mentions: 1
Published: about 16 years ago

10.1186/s12872-021-02011-8

SCD leads to the development and progression of acute myocardial infarction through the AMPK signaling pathway
Cited by: 3
Author(s): Lijie Wang, Feng Yu
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-30325-9

Systematic analysis reveals molecular characteristics of ERG-negative prostate cancer
Cited by: 12
Author(s): Qingyu Xiao, Yidi Sun, Albert Dobi, Shiv Srivastava, Ke Wang, Sudhir Srivastava, Yuan Ji, Jun Hou, Guoping Zhao, Yixue Li, Hong Li
Software Mentions: 1
Published: about 6 years ago

10.1186/s12906-017-1911-0

Comprehensive evaluation of gene expression signatures in response to electroacupuncture stimulation at Zusanli (ST36) acupoint by transcriptomic analysis
Cited by: 2
Author(s): Jing-Shan Wu, Hsin-Yi Lo, Chia-Cheng Li, Fengyuan Chen, Chien-Yun Hsiang, Tin-Yun Ho
Software Mentions: 1
Published: over 7 years ago

10.1186/s40164-018-0105-x

Understanding metabolic changes in aging bone marrow
Cited by: 12
Author(s): Kwasi M. Connor, Young Hsu, Pardeep K. Aggarwal, Stephen Capone, Anthony Colombo, Giridharan Ramsingh
Software Mentions: 1
Published: over 6 years ago

10.1038/s12276-019-0255-x

microRNA-328 in exosomes derived from M2 macrophages exerts a promotive effect on the progression of pulmonary fibrosis via FAM13A in a rat model
Cited by: 57
Author(s): Meng Yao, Weihong Zhang, Wentao Ma, Qiuhong Liu, Xing Liu, Guiqiu Zhao
Software Mentions: 1
Published: over 5 years ago

10.1038/s12276-021-00651-6

Plasma extracellular vesicle delivery of miR-210-3p by targeting ATG7 to promote sepsis-induced acute lung injury by regulating autophagy and activating inflammation
Cited by: 16
Author(s): Guang Li, Bo Wang, Xiangchao Ding, Xinghua Zhang, Jian Tang, Hongyuan Lin
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0068415

Gene Expression Profiling of Immune-Competent Human Cells Exposed to Engineered Zinc Oxide or Titanium Dioxide Nanoparticles
Cited by: 87
Author(s): Soile Tuomela, Reija Autio, Tina Buerki-Thurnherr, Osman Arslan, Andrea Kunzmann, Britta Andersson-Willman, Peter Wick, Sanjay Mathur, Annika Scheynius, Harald F. Krug, Bengt Fadeel, Riitta Lahesmaa
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-018-32008-x

Hypercapnia Alters Expression of Immune Response, Nucleosome Assembly and Lipid Metabolism Genes in Differentiated Human Bronchial Epithelial Cells
Cited by: 28
Author(s): S. Marina Casalino‐Matsuda, Naizhen Wang, Peder Thusgaard Ruhoff, Hiroaki Matsuda, Marie Nlend, Aisha Nair, Igal Szleifer, Greg J. Beitel, Jacob I. Sznajder, Peter H. S. Sporn
Software Mentions: 1
Published: about 6 years ago

10.3892/etm.2014.2041

Identification of dysregulated miRNAs and their regulatory signature in glioma patients using the partial least squares method
Cited by: 11
Author(s): Jiajun Shou, Shaohua Gu, Wentao Gu
Software Mentions: 1
Published: about 10 years ago

10.1186/s12885-021-08166-z

Bioinformatics analysis of mRNA and miRNA microarray to identify the key miRNA-mRNA pairs in cisplatin-resistant ovarian cancer
Cited by: 3
Author(s): Xue Bai, Shupeng Li, Xiance Jin, Lifeng Liu
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-31999-x

Sex-specific patterns of gene expression following influenza vaccination
Cited by: 11
Author(s): Feng Wen, Jianming Guo, Zhili Li, Shujian Huang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-020-07598-3

Identification and validation of a six-gene signature associated with glycolysis to predict the prognosis of patients with cervical cancer
Cited by: 14
Author(s): Luya Cai, Chuan Hu, Shanshan Yu, Lixiao Liu, Xiaobo Yu, Jiahua Chen, Xuan Li, Fan Lin, Cheng Zhang, Wenfeng Li, Xiaojian Yan
Software Mentions: 1
Published: about 4 years ago

10.1186/s12906-016-1349-9

Identification of more objective biomarkers for Blood-Stasis syndrome diagnosis
Cited by: 21
Author(s): Jingqiu Liao, Yongmei Liu, Jie Wang
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-31767-x

Exploratory analysis of the human breast DNA methylation profile upon soymilk exposure
Cited by: 3
Author(s): Louis Coussement, Selin Bolca, Wim Van Criekinge, Geert Trooskens, Klaas Mensaert, Katrien Poels, Nathalie Roche, Phillip Blondeel, Lode Godderis, Herman Depypere, Tim De Meyer
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-021-08293-7

A circular RNAs dataset landscape reveals potential signatures for the detection and prognosis of early-stage lung adenocarcinoma
Cited by: 5
Author(s): Zhiying Chen, Jiahui Wei, Min Li, Yufei Zhao
Software Mentions: 1
Published: over 3 years ago

10.1186/s12885-020-07590-x

Expression and prognostic analyses of the insulin-like growth factor 2 mRNA binding protein family in human pancreatic cancer
Cited by: 9
Author(s): Xiaoping Chen, Shu-Yi Hu, Chen Zhu, Xihu Qin
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2407-10-627

Tumour auto-antibody screening: performance of protein microarrays using SEREX derived antigens
Cited by: 19
Author(s): René Stempfer, Parvez Syed, Klemens Vierlinger, Rudolf Pichler, Eckart Meese, Petra Leidinger, Nicole Ludwig, Albert Kriegner, Christa Nöhammer, Andreas Weinhäusel
Software Mentions: 1
Published: about 14 years ago

10.1186/s12014-018-9200-6

Proteomic distinction of renal oncocytomas and chromophobe renal cell carcinomas
Cited by: 8
Author(s): Vanessa Drendel, Bianca Heckelmann, Christoph Schell, Lucas Kook, Martin L. Biniossek, Martin Werner, Cordula A. Jilg, Oliver Schilling
Software Mentions: 1
Published: over 6 years ago

10.1186/s12014-020-09300-y

Comparative analysis of differentially abundant proteins quantified by LC–MS/MS between flash frozen and laser microdissected OCT-embedded breast tumor samples
Cited by: 2
Author(s): Lori A. Sturtz, Guisong Wang, Punit Shah, Richard Searfoss, Praveen Kumar, Jeffrey A. Hooke, J. Leigh Fantacone-Campbell, Brenda Deyarmin, Mary Lou Cutler, Rangaprasad Sarangarajan, Niven R. Narain, Hai Hu, Michael A. Kiebish, Albert J. Kovatich, Craig D. Shriver
Software Mentions: 1
Published: about 4 years ago

10.1186/s12890-017-0472-9

Unsupervised gene expression analyses identify IPF-severity correlated signatures, associated genes and biomarkers
Cited by: 24
Author(s): Yunguan Wang, Jaswanth Yella, Jing Chen, Francis X. McCormack, Satish K. Madala, Anil G. Jegga
Software Mentions: 1
Published: about 7 years ago

10.1007/s10585-012-9552-7

Nuclear LEF1/TCF4 correlate with poor prognosis but not with nuclear β-catenin in cerebral metastasis of lung adenocarcinomas
Cited by: 39
Author(s): Annalen Bleckmann, Laila Siam, Florian Klemm, Eva Rietkötter, Chr. Wegner, Frank Krämer, Tim Beißbarth, Claudia R. Binder, Christine Stadelmann, Tobias Pukrop
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0041041

Role of Heat-Stable Enterotoxins in the Induction of Early Immune Responses in Piglets after Infection with Enterotoxigenic Escherichia coli
Cited by: 59
Author(s): Michaela Loos, Marisa Geens, Stijn Schauvliege, Frank Gasthuys, Jan van der Meulen, J. Daniel Dubreuil, Bruno Goddeeris, Theodoor Niewold, Eric Cox
Software Mentions: 1
Published: over 12 years ago

10.1186/s12885-018-4633-x

Interleukin 8 is a biomarker of telomerase inhibition in cancer cells
Cited by: 3
Author(s): Peter D. Solomon, Yujuan Dong, Shaillay Kumar Dogra, Romi Gupta
Software Mentions: 1
Published: over 6 years ago

10.1186/s13148-020-00894-6

Concentrations of persistent organic pollutants in maternal plasma and epigenome-wide placental DNA methylation
Cited by: 45
Author(s): Marion Ouidir, Pauline Mendola, Germaine M. Buck Louis, Kurunthachalam Kannan, Cuilin Zhang, Fasil Tekola‐Ayele
Software Mentions: 1
Published: over 4 years ago

10.18632/aging.102874

Comprehensive characterization of endometrial competing endogenous RNA network in infertile women of childbearing age
Cited by: 8
Author(s): Meihua Zhang, Junxia Li, Shuyin Duan, Zhenya Fang, Jiaqi Tian, Haiyan Yin, Qingfeng Zhai, Xietong Wang, Lin Zhang
Software Mentions: 1
Published: over 4 years ago

10.1186/s12906-017-1586-6

Exploration of anti-cancer effects and mechanisms of Zuo-Jin-Wan and its alkaloid components in vitro and in orthotopic HepG2 xenograft immunocompetent mice
Cited by: 32
Author(s): Shun Ting Chou, Chien Yun Hsiang, Hsin Yi Lo, Hui Huang, Ming Tsung Lai, Ching Liang Hsieh, Su‐Yin Chiang, Tin Yun Ho
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12885-020-07725-0

Identification of a novel six autophagy-related genes signature for the prognostic and a miRNA-related autophagy predictor for anti-PD-1 therapy responses in prostate cancer
Cited by: 9
Author(s): Lei Wu, Quan Wen, Guojun Yue, Qiong Luo, Dongxu Peng, Ying Pan, Guihai Zhang
Software Mentions: 1
Published: almost 4 years ago

10.12688/f1000research.8210.2

A curated transcriptome dataset collection to investigate the development and differentiation of the human placenta and its associated pathologies
Cited by: 10
Author(s): Alexandra K. Marr, Sabri Boughorbel, Scott Presnell, Charlie Quinn, Damien Chaussabel, Tomoshige Kino
Software Mentions: 1
Published: over 8 years ago

10.12688/f1000research.16172.2

Strigolactone GR24 upregulates target genes of the cytoprotective transcription factor Nrf2 in skeletal muscle
Cited by: 1
Author(s): Shalem Modi, Tarja Kokkola
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-021-08525-w

Bioinformatics analysis of C3 and CXCR4 demonstrates their potential as prognostic biomarkers in clear cell renal cell carcinoma (ccRCC)
Cited by: 5
Author(s): Jing Quan, Yuchen Bai, Yunbei Yang, Er Lei Han, Hong Bai, Qi Zhang, Dahong Zhang
Software Mentions: 1
Published: over 3 years ago

10.1155/2021/6610511

Osthole Inhibits Breast Cancer Progression through Upregulating Tumor Suppressor GNG7
Cited by: 11
Author(s): Jie Mei, Zhihui Wang, Shaojie Zhao, Yan Zhang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0159010

Gremlin-1 Overexpression in Mouse Lung Reduces Silica-Induced Lymphocyte Recruitment – A Link to Idiopathic Pulmonary Fibrosis through Negative Correlation with CXCL10 Chemokine
Cited by: 11
Author(s): Katri Koli, Eva Sutinen, Mikko Rönty, Pia Rantakari, Vittorio Fortino, Ville Pulkkinen, Dario Greco, Petra Sipilä, Marjukka Myllärniemi
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0194229

Pure flavonoid epicatechin and whole genome gene expression profiles in circulating immune cells in adults with elevated blood pressure: A randomised double-blind, placebo-controlled, crossover trial
Cited by: 25
Author(s): Diederik Esser, Johanna M. Geleijnse, Juri C. Matualatupauw, James I Dower, Daan Kromhout, P.C.H. Hollman, Lydia A. Afman
Software Mentions: 1
Published: over 6 years ago

10.1186/s12906-019-2577-6

Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks
Cited by: 18
Author(s): Meizhen Zhu, Meng Li, Wenjun Zhou, Yang Yang, Fenghua Li, Li Zhang, Guang Ji
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-213X-12-4

Fine scale analysis of gene expression in Drosophila melanogaster gonads reveals Programmed cell death 4 promotes the differentiation of female germline stem cells
Cited by: 16
Author(s): Amy Cash, Justen Andrews
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12885-020-06869-3

SCDb: an integrated database of stomach cancer
Cited by: 7
Author(s): Erli Gu, Wei Song, Ajing Liu, Wang Hong
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-213X-7-48

Novel subdomains of the mouse olfactory bulb defined by molecular heterogeneity in the nascent external plexiform and glomerular layers
Cited by: 11
Author(s): Eric O. Williams, Yuanyuan Xiao, Heather M. Sickles, Paul Shafer, Golan Yona, Jean Yee Hwa Yang, David M. Lin
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-213X-11-20

FGF signalling through RAS/MAPK and PI3K pathways regulates cell movement and gene expression in the chicken primitive streak without affecting E-cadherin expression
Cited by: 66
Author(s): Katharine M. Hardy, Tatiana A. Yatskievych, JH Konieczka, Alexander S. Bobbs, Parker B. Antin
Software Mentions: 1
Published: over 13 years ago

10.1042/BSR20192724

Profiles of immune cell infiltration in head and neck squamous carcinoma
Cited by: 18
Author(s): Bin Liang, Tao Ye, Tianjiao Wang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12885-018-4546-8

Gene expression profiling of 1200 pancreatic ductal adenocarcinoma reveals novel subtypes
Cited by: 55
Author(s): Liang Zhao, Hongya Zhao, Hong Yan
Software Mentions: 1
Published: over 6 years ago