bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1093/jxb/erx104

Complexity and specificity of the maize (Zea mays L.) root hair transcriptome
Cited by: 18
Author(s): Stefan Hey, Jutta A. Baldauf, Nina Opitz, Andrew Lithio, Asher Pasha, Nicholas J. Provart, Dan Nettleton, Frank Hochholdinger
Software Mentions: 1
Published: over 7 years ago

10.1093/jxb/erw295

Spatial and temporal transcriptome changes occurring during flower opening and senescence of the ephemeral hibiscus flower,Hibiscus rosa-sinensis
Cited by: 30
Author(s): Alice Trivellini, Giacomo Cocetta, Donald A. Hunter, Paolo Vernieri, António Ferrante
Software Mentions: 1
Published: about 8 years ago

10.1042/BSR20201946

Circular RNA expression profiles in umbilical cord blood exosomes from normal and gestational diabetes mellitus patients
Cited by: 24
Author(s): Mingtao Cao, Le Zhang, Yongcheng Lin, Zhengying Li, Jianjuan Xu, Zhonghua Shi, Zhong Chen, Jinqi Ma, Juan Wen
Software Mentions: 1
Published: about 4 years ago

10.1042/BSR20182274

EPHA3 enhances macrophage autophagy and apoptosis by disrupting the mTOR signaling pathway in mice with endometriosis
Cited by: 8
Author(s): Hongmei Xu, Yu-Hang Gao, Yang Shu, Yi Wang, Qingyang Shi
Software Mentions: 1
Published: over 5 years ago

10.1093/jxb/eru145

Heterografting with nonself rootstocks induces genes involved in stress responses at the graft interface when compared with autografted controls
Cited by: 85
Author(s): Sarah Jane Cookson, María José Clemente‐Moreno, Cyril Hévin, Larissa Zita Nyamba Mendome, Serge Delrot, Noël Magnin, Claudine Trossat-Magnin, Nathalie Ollat
Software Mentions: 1
Published: over 10 years ago

10.1042/BSR20200390

MIR600HG suppresses metastasis and enhances oxaliplatin chemosensitivity by targeting ALDH1A3 in colorectal cancer
Cited by: 19
Author(s): Yi Yao, Nan Li
Software Mentions: 1
Published: over 4 years ago

10.1155/2018/7361684

A Transcriptional Sequencing Analysis of Islet Stellate Cell and Pancreatic Stellate Cell
Cited by: 10
Author(s): Xiaohang Wang, Wei Li, Juan Chen, Sheng Zhao, Shanhu Qiu, Han Yin, Vladmir Carvalho, Yunting Zhou, Ruifeng Shi, Jiannan Hu, Shenyi Li, Munire Nijiati, Zilin Sun
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-52682-9

The intrinsic circadian clock in podocytes controls glomerular filtration rate
Cited by: 22
Author(s): Camille Ansermet, Gabriel Centeno, Svetlana Nikolaeva, Marc Maillard, Sylvain Pradervand, Dmitri Firsov
Software Mentions: 1
Published: about 5 years ago

10.1155/2014/763936

Targets and Candidate Agents for Type 2 Diabetes Treatment with Computational Bioinformatics Approach
Cited by: 10
Author(s): Qiong Wang, Zhigang Zhao, Jing Shang, Wei Xia
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-019-52886-z

Identification of candidate cancer drivers by integrative Epi-DNA and Gene Expression (iEDGE) data analysis
Cited by: 4
Author(s): Amy Li, Bjoern Chapuy, Xaralabos Varelas, Paola Sebastiani, Stefano Monti
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-53482-x

Late recurrence of breast cancer is associated with pro-cancerous immune microenvironment in the primary tumor
Cited by: 43
Author(s): Takashi Terauchi, Li Yan, Mariko Asaoka, Omar M. Rashid, Kazuaki Takabe
Software Mentions: 1
Published: about 5 years ago

10.1155/2013/589451

The Effect of Diabetes-Associated Autoantigens on Cell Processes in Human PBMCs and Their Relevance to Autoimmune Diabetes Development
Cited by: 4
Author(s): Jana Včeláková, Radek Blatný, Z. Halbhuber, Michal Kolář, Aleš Neuwirth, Lenka Petruželková, Tereza Ulmannová, Stanislava Koloušková, Zdenĕk Šumnı́k, Pavlína Piťhová, M Krivjanska, Dominik Filipp, Kateřina Štechová
Software Mentions: 1
Published: almost 12 years ago

10.3390/jcm9051276

Gene Expression Patterns Distinguish Mortality Risk in Patients with Postsurgical Shock
Cited by: 7
Author(s): Pedro Martínez-Paz, Marta Aragón-Camino, Esther Gómez-Sánchez, Mario Lorenzo-López, Estefanía Gómez-Pesquera, Rocío López-Herrero, Belén Sánchez-Quirós, Olga de la Varga, Álvaro Tamayo-Velasco, Christian Ortega-Loubón, Emilio García‐Morán, Hugo Gonzalo, María Heredia-Rodríguez, Eduardo Tamayo
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-54036-x

Bone marrow adipose tissue does not express UCP1 during development or adrenergic-induced remodeling
Cited by: 20
Author(s): Clarissa S. Craft, Hero Robles, Madelyn R. Lorenz, Eric D. Hilker, Kristann Magee, Thomas Levin Andersen, William P. Cawthorn, Ormond A. MacDougald, Charles Harris, Erica L. Scheller
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-53907-7

FGF Signalling in the Self-Renewal of Colon Cancer Organoids
Cited by: 28
Author(s): Jörg Otte, Levent Dizdar, Bianca Behrens, Wolfgang Goering, Wolfram Trudo Knoefel, Wasco Wruck, Nikolas H. Stoecklein, James Adjaye
Software Mentions: 1
Published: about 5 years ago

10.1002/jcla.23779

A ten N6‐methyladenosine‐related long non‐coding RNAs signature predicts prognosis of triple‐negative breast cancer
Cited by: 19
Author(s): Jie Wu, Yan Cai, Gaiping Zhao, Maolan Li
Software Mentions: 1
Published: over 3 years ago

10.1186/s12859-019-2944-9

Prediction of regulatory targets of alternative isoforms of the epidermal growth factor receptor in a glioblastoma cell line
Cited by: 4
Author(s): Claus Weinholdt, Henri Wichmann, Johanna Kotrba, David H. Ardell, Matthias Kappler, Alexander W. Eckert, Dirk Vordermark, Ivo Große
Software Mentions: 1
Published: over 5 years ago

10.1002/jcla.23588

Bioinformatics analysis of differentially expressed miRNAs in non‐small cell lung cancer
Cited by: 14
Author(s): Hui Yu, Zhonghao Pang, Gang Li, Tianyi Gu
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-019-54868-7

Novel Bead-Based Epitope Assay is a sensitive and reliable tool for profiling epitope-specific antibody repertoire in food allergy
Cited by: 35
Author(s): Maria Suprun, Robert C. Getts, Rohit Raghunathan, Galina Grishina, Marc Witmer, Gustavo Giménez, Hugh A. Sampson, Mayte Suárez‐Fariñas
Software Mentions: 1
Published: almost 5 years ago

10.1002/jcla.23584

Microinjection manipulation decreases the expression of GABA‐A receptor signaling pathway genes in mouse embryos derived using intracytoplasmic sperm injection
Cited by: 0
Author(s): Zili Zhang, Ting Wang, Juanhua Huang, Yu‐Yao Huang, Qingxue Zhang
Software Mentions: 1
Published: about 4 years ago

10.1002/jcla.23393

Identification of plasma hsa_circ_0008673 expression as a potential biomarker and tumor regulator of breast cancer
Cited by: 26
Author(s): Youting Hu, Qi Song, Jinmin Zhao, Jian Ruan, Fan He, Xia Yang, Xindi Yu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-55287-4

TRANSNAP: a web database providing comprehensive information on Japanese pear transcriptome
Cited by: 8
Author(s): Shizuka Koshimizu, Yoshitomo Nakamura, Chikako Nishitani, Mariko Kobayashi, Hajime Ohyanagi, Takatsugu Yamamoto, Kentarô Yano
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-55645-2

Bacillus amyloliquefaciens MBI600 differentially induces tomato defense signaling pathways depending on plant part and dose of application
Cited by: 36
Author(s): Anastasia Dimopoulou, Ioannis Theologidis, Burghard Liebmann, Kriton Kalantidis, Nikon Vassilakos, Nicholas Skandalis
Software Mentions: 1
Published: almost 5 years ago

10.1172/JCI125170

Sonic Hedgehog signaling limits atopic dermatitis via Gli2-driven immune regulation
Cited by: 36
Author(s): Eleftheria Papaioannou, Diana C. Yánez, Scott R. Ross, Ching‐In Lau, Anisha Solanki, Mira Manilal Chawda, Alex Virasami, Ismael Ranz, M. Ono, R O'Shaughnessy, Tessa Crompton
Software Mentions: 1
Published: over 5 years ago

10.1210/clinem/dgz266

Muscle-Liver Substrate Fluxes in Exercising Humans and Potential Effects on Hepatic Metabolism
Cited by: 23
Author(s): Chunxiu Hu, Miriam Hoene, Peter Plomgaard, Jørn Bindslev Hansen, Xinjie Zhao, Jia Li, Xiaolin Wang, J Clemmesen, Niels H. Secher, Hans Ulrich Häring, Rainer Lehmann, Guowang Xu, Cora Weigert
Software Mentions: 1
Published: almost 5 years ago

10.1042/BSR20191503

Systematic large-scale meta-analysis identifies miRNA-429/200a/b and miRNA-141/200c clusters as biomarkers for necrotizing enterocolitis in newborn
Cited by: 16
Author(s): Hong Liu, Yibiao Wang
Software Mentions: 1
Published: about 5 years ago

10.1177/0271678X211004307

Global proteomic analysis of extracellular matrix in mouse and human brain highlights relevance to cerebrovascular disease
Cited by: 11
Author(s): Alexandra Pokhilko, Gaia Brezzo, Lahiru Handunnetthi, Raphael Heilig, Rachel Lennon, Colin Smith, Stuart M. Allan, Alessandra Granata, Sanjay Sinha, T Wang, Hugh S. Markus, Alexandra Naba, Román Fischer, Tom Van Agtmael, Karen Horsburgh, M Z Cader
Software Mentions: 1
Published: over 3 years ago

10.1242/jcs.184291

Pax8 controls thyroid follicular polarity through Cadherin-16
Cited by: 34
Author(s): Petrina Koumarianou, Gonzalo Goméz-López, Pilar Santisteban
Software Mentions: 1
Published: almost 9 years ago

10.1002/jcp.28789

A miR‐206 regulated gene landscape enhances mammary epithelial differentiation
Cited by: 8
Author(s): Jun Wang, Eylem Aydoğdu, Srijita Mukhopadhyay, Luísa A. Helguero, Cecilia Williams
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-57011-8

Regulation of Gdf5 expression in joint remodelling, repair and osteoarthritis
Cited by: 38
Author(s): Karolina Kania, Fabio Colella, Anna Helene Katrin Riemen, Hui Wang, Kenneth A. Howard, Thomas Aigner, Francesco Dell’Accio, Terence D. Capellini, Anke J. Roelofs, Cosimo De Bari
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2407-13-231

Age dependence of tumor genetics in unfavorable neuroblastoma: arrayCGH profiles of 34 consecutive cases, using a Swedish 25-year neuroblastoma cohort for validation
Cited by: 9
Author(s): Cihan Cetinkaya, Tommy Martinsson, Johanna Sandgren, Catarina Träger, Per Kogner, Jan P. Dumanski, Teresita Díaz de Ståhl, Fredrik Hedborg
Software Mentions: 1
Published: over 11 years ago

10.1111/jcmm.16844

MALAT1 shuttled by extracellular vesicles promotes M1 polarization of macrophages to induce acute pancreatitis via miR‐181a‐5p/HMGB1 axis
Cited by: 19
Author(s): Jie Liu, Zequn Niu, Rui Zhang, Zhuo Peng, Liming Wang, Zhong Liu, Yanxia Gao, Honghong Pei, Longfei Pan
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-019-57293-y

CD40L membrane retention enhances the immunostimulatory effects of CD40 ligation
Cited by: 13
Author(s): Taha Elmetwali, Asmaa Salman, Wenbin Wei, Syed A. Hussain, Lawrence S. Young, Daniel H. Palmer
Software Mentions: 1
Published: almost 5 years ago

10.1042/BSR20191985

Time series expression pattern of key genes reveals the molecular process of esophageal cancer
Cited by: 2
Author(s): Jiafu Wang, Xiang Xie, Yifeng Sun
Software Mentions: 1
Published: almost 5 years ago

10.1186/1755-8794-7-35

A systems biology approach to understand the pathophysiological mechanisms of cardiac pathological hypertrophy associated with rosiglitazone
Cited by: 18
Author(s): Lars Verschuren, Peter Y. Wielinga, Thomas Kelder, Marijana Radonjić, Kanita Salic, Robert Kleemann, Ben van Ommen, Teake Kooistra
Software Mentions: 1
Published: over 10 years ago

10.1111/jcmm.16792

P53 suppresses the progression of hepatocellular carcinoma via miR‐15a by decreasing OGT expression and EZH2 stabilization
Cited by: 10
Author(s): Zhenyu You, Dandan Peng, Yixin Cao, Yuanzhe Zhu, Jianjun Yin, Guangxing Zhang, Xiao-Dong Peng
Software Mentions: 1
Published: about 3 years ago

10.1111/jcmm.16745

TNF‐α induces up‐regulation of MicroRNA‐27a via the P38 signalling pathway, which inhibits intervertebral disc degeneration by targeting FSTL1
Cited by: 6
Author(s): Jihong Shi, Shaoyi Wang, Qiting He, Kaiwen Liu, Weihua Zhao, Qing Xie, Lei Cheng
Software Mentions: 1
Published: over 3 years ago

10.1186/s12920-019-0566-8

Discovery of stroke-related blood biomarkers from gene expression network models
Cited by: 13
Author(s): Konstantinos Theofilatos, Aigli Korfiati, Seferina Mavroudi, Matthew C. Cowperthwaite, Max Shpak
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.16756

IRF1 as a potential biomarker in Mycobacterium tuberculosis infection
Cited by: 1
Author(s): Liwei Wu, Qiliang Cheng, Wen Zhu, Yanzheng Song, Yijun Zhu, Lin Wang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-57698-0

Silencing of SENP2 in Multiple Myeloma Induces Bortezomib Resistance by Activating NF-κB Through the Modulation of IκBα Sumoylation
Cited by: 15
Author(s): Hong-Yi Xie, Yuanliang Gu, Wenjuan Wang, Xuyao Wang, Xiaojuan Ye, Chao Xin, Mengjiao Lü, B. Ashok Reddy, Peng Shu
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12885-016-2212-6

Dynamic modulation of phosphoprotein expression in ovarian cancer xenograft models
Cited by: 5
Author(s): Antonis Koussounadis, Simon P. Langdon, In Hwa Um, Charlene Kay, Kyle Francis, David J. Harrison, V. Anne Smith
Software Mentions: 1
Published: over 8 years ago

10.1111/jcmm.16523

Bioinformatic analysis and validation of microRNA‐508‐3p as a protective predictor by targeting NR4A3/MEK axis in pulmonary arterial hypertension
Cited by: 8
Author(s): Yi Ma, Shu-Shu Chen, Jiang Fen, Ru-Yi Ma, Huanliang Wang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12920-020-00799-6

Comprehensive analysis of angiogenesis-related genes and pathways in early diabetic retinopathy
Cited by: 18
Author(s): Chufeng Gu, Thashi Lhamo, Chen Zou, Chuandi Zhou, Tong Su, Deji Draga, Da Luo, Zhi Zheng, Li Yin, Qinghua Qiu
Software Mentions: 1
Published: about 4 years ago

10.1111/jcmm.16405

miR‐365 secreted from M2 Macrophage‐derived extracellular vesicles promotes pancreatic ductal adenocarcinoma progression through the BTG2/FAK/AKT axis
Cited by: 21
Author(s): Xin Li, Hao Xu, Jianfeng Yi, Changfeng Dong, Hui Zhang, Zhengfeng Wang, Long Miao, Wence Zhou
Software Mentions: 1
Published: over 3 years ago

10.1111/jcmm.15765

Cancer‐associated fibroblast‐derived exosomal microRNA‐24‐3p enhances colon cancer cell resistance to MTX by down‐regulating CDX2/HEPH axis
Cited by: 40
Author(s): Hongwei Zhang, Yi Shi, Ji‐Bin Liu, Huimin Wang, Pei‐Yao Wang, Zhijun Wu, Liu Li, Li‐Peng Gu, Ping‐Sheng Cao, Gao‐Ren Wang, Yu‐Shui Ma, Da Fu
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-58358-z

Stratifying cellular metabolism during weight loss: an interplay of metabolism, metabolic flexibility and inflammation
Cited by: 8
Author(s): Samar Tareen, Martina Kutmon, Theo M. de Kok, E.C.M. Mariman, Marleen A. van Baak, Chris T. Evelo, Michiel E. Adriaens, Ilja C. W. Arts
Software Mentions: 1
Published: almost 5 years ago

10.1111/jcmm.15866

Extracellular vesicles‐encapsulated let‐7i shed from bone mesenchymal stem cells suppress lung cancer via KDM3A/DCLK1/FXYD3 axis
Cited by: 22
Author(s): Jiefeng Liu, Yuhua Feng, Xinyu Zeng, Miao He, Yujing Gong, Yiping Liu
Software Mentions: 1
Published: almost 4 years ago

10.3389/fphar.2020.00147

Modular Characteristics and Mechanism of Action of Herbs for Endometriosis Treatment in Chinese Medicine: A Data Mining and Network Pharmacology–Based Identification
Cited by: 34
Author(s): Weiying Zheng, Jiayi Wu, Jiangyong Gu, Heng Weng, Jie Wang, Tao Wang, Xuefang Liang, Lixing Cao
Software Mentions: 1
Published: over 4 years ago

10.1186/s12920-020-0657-6

DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation
Cited by: 64
Author(s): Ieva Rauluševičiūtė, Finn Drabløs, Morten Rye
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms221910819

Transcriptome Analyses Identify Potential Key microRNAs and Their Target Genes Contributing to Ovarian Reserve
Cited by: 1
Author(s): Yoon Young Kim, Kwang S. Kim, Yong Jin Kim, Sung Woo Kim, Hoon Kim, Seung‐Yup Ku
Software Mentions: 1
Published: about 3 years ago

10.1155/2021/7394344

PP2 Ameliorates Renal Fibrosis by Regulating the NF-κB/COX-2 and PPARγ/UCP2 Pathway in Diabetic Mice
Cited by: 11
Author(s): Jinying Wei, Xia Deng, Li Yang, Runmei Li, Zhaohua Yang, Xiuyuan Li, Shan Song, Yonghong Shi, Huijun Duan, Haijiang Wu
Software Mentions: 1
Published: about 3 years ago

10.3389/fphar.2018.01276

Celastrol Alleviates Chronic Obstructive Pulmonary Disease by Inhibiting Cellular Inflammation Induced by Cigarette Smoke via the Ednrb/Kng1 Signaling Pathway
Cited by: 29
Author(s): Ke Shi, Xi Chen, Baohua Xie, Sha Yang, Da Liu, Guo Dai, Qiong Chen
Software Mentions: 1
Published: about 6 years ago

10.1186/s12920-021-01087-7

Integrated bioinformatics analysis of core regulatory elements involved in keloid formation
Cited by: 4
Author(s): Chuying Li, Mei-Tong Jin, Yinli Luo, Zhehu Jin, Long-Quan Pi
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-020-59577-0

Deducing signaling pathways from parallel actions of arsenite and antimonite in human epidermal keratinocytes
Cited by: 3
Author(s): Marjorie A. Phillips, Ángela Cánovas, Miguel A. Rea, Alma Islas–Trejo, Juan F. Medrano, Blythe Durbin‐Johnson, David M. Rocke, Robert H. Rice
Software Mentions: 1
Published: almost 5 years ago

10.3389/fphar.2020.584637

Age-Dependent Assessment of Genes Involved in Cellular Senescence, Telomere, and Mitochondrial Pathways in Human Lung Tissue of Smokers, COPD, and IPF: Associations With SARS-CoV-2 COVID-19 ACE2-TMPRSS2-Furin-DPP4 Axis
Cited by: 44
Author(s): Krishna Prahlad Maremanda, Isaac K. Sundar, Dongmei Li, Irfan Rahman
Software Mentions: 1
Published: about 4 years ago

10.3389/fphar.2019.00266

A Combined Phytochemistry and Network Pharmacology Approach to Reveal the Potential Antitumor Effective Substances and Mechanism of Phellinus igniarius
Cited by: 21
Author(s): Yu Dong, Ping Qiu, Rui Zhu, Lingfei Zhao, Pinghu Zhang, Yiqi Wang, Changyu Li, Kequn Chai, Dan Shou, Huajun Zhao
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2018.00905

Pathway-Based Drug Repositioning for Breast Cancer Molecular Subtypes
Cited by: 31
Author(s): Raúl A. Mejía-Pedroza, Jesús Espinal-Enríquez, Enrique Hernández‐Lemus
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2020.556984

In Silico Prediction of Molecular Targets of Astragaloside IV for Alleviation of COVID-19 Hyperinflammation by Systems Network Pharmacology and Bioinformatic Gene Expression Analysis
Cited by: 15
Author(s): Chenliang Ge, Yan He
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2407-10-262

High-throughput miRNA profiling of human melanoma blood samples
Cited by: 143
Author(s): Petra Leidinger, Andreas Keller, Anne Borries, Jörg Reichrath, Knuth Rass, Sven Jäger, Hans‐Peter Lenhof, Eckart Meese
Software Mentions: 1
Published: over 14 years ago

10.3389/fphar.2021.698671

Non-Lethal Concentration of MeHg Causes Marked Responses in the DNA Repair, Integrity, and Replication Pathways in the Exposed Human Salivary Gland Cell Line
Cited by: 0
Author(s): Lygia Sega Nogueira, Carolina Pinheiro Vasconcelos, Jéssica Rodrigues Plaça, Geovanni Pereira Mitre, Leonardo Oliveira Bittencourt, Maria Sueli da Silva Kataoka, Edivaldo Herculano Corrêa de Oliveira, Rafael Rodrigues Lima
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-020-60714-y

Identification of significant gene biomarkers of low back pain caused by changes in the osmotic pressure of nucleus pulposus cells
Cited by: 10
Author(s): Changsong Zhao, Xuemin Quan, Jie He, Rugang Zhao, Yao Zhang, Xin Li, Sheng Sun, Rui Ma, Qiang Zhang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-60616-z

Integrated RNA and metabolite profiling of urine liquid biopsies for prostate cancer biomarker discovery
Cited by: 35
Author(s): Bongyong Lee, Iqbal Mahmud, John Marchica, Paweł Dereziński, Feng Qi, Fubo Wang, Piyush Joshi, Felipe Valerio, Inoel Rivera, Vipul Patel, Christian P. Pavlovich, Timothy J. Garrett, Gary P. Schroth, Yinghao Sun, Ranjan J. Perera
Software Mentions: 1
Published: over 4 years ago

10.3389/fphar.2020.00957

Identification of Hub Genes in Protective Effect of Astragaloside IV on Aconitine-Induced Cardiac Damage in Zebrafish Based on Bioinformatics Analysis
Cited by: 8
Author(s): Mingzhu Wang, Yanan Shi, Lei Yao, Qiang Li, Youhua Wang, Jianhua Li, Deyu Fu
Software Mentions: 1
Published: over 4 years ago

10.1111/jne.12339

Decreased Npas4 and Arc <scp>mRNA</scp> Levels in the Hippocampus of Aged Memory‐Impaired Wild‐Type But Not Memory Preserved 11β‐<scp>HSD</scp>1 Deficient Mice
Cited by: 20
Author(s): Jing Qiu, Donald R. Dunbar, June Noble, Carolynn Cairns, Rod Carter, Val Kelly, Karen Chapman, Jonathan R. Seckl, Joyce L.W. Yau
Software Mentions: 1
Published: almost 9 years ago

10.3390/nu11020232

β-Cryptoxanthin Reduces Body Fat and Increases Oxidative Stress Response in Caenorhabditis elegans Model
Cited by: 18
Author(s): Silvia Llopis, María Jesús Rodrigo, Núria González, Salvador Genovés, Lorenzo Zacarı́as, Daniel Ramón, Patricia Martorell
Software Mentions: 1
Published: almost 6 years ago

10.3389/fped.2020.00437

DNA Methylation Profile in Human Cord Blood Mononuclear Leukocytes From Term Neonates: Effects of Histological Chorioamnionitis
Cited by: 5
Author(s): Gina Fong, Suhita Gayen Betal, Swati Murthy, Michael Favara, Joanna Chan, Sankar Addya, Thomas H. Shaffer, Jay S. Greenspan, Vineet Bhandari, Dongmei Li, Irfan Rahman, Zubair H. Aghai
Software Mentions: 1
Published: over 4 years ago

10.1186/s12920-015-0103-3

Integrated genomics has identified a new AT/RT-like yet INI1-positive brain tumor subtype among primary pediatric embryonal tumors
Cited by: 14
Author(s): Donald Ming Tak Ho, Chuan Chi Shih, Muh Lii Liang, Chan Yen Tsai, Tsung Han Hsieh, Chin Han Tsai, Shih Chieh Lin, Ting Chang, Meng En Chao, Hsei Wei Wang, Tai-Tong Wong
Software Mentions: 1
Published: over 9 years ago

10.1186/1755-8794-6-41

Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker
Cited by: 49
Author(s): Intawat Nookaew, Kaisa Thorell, Kuntal Worah, Shugui Wang, Martin L. Hibberd, Henrik Sjövall, Sven Pettersson, Jens Nielsen, Samuel Lundin
Software Mentions: 1
Published: about 11 years ago

10.1186/s12974-018-1386-z

The atypical RhoGTPase RhoE/Rnd3 is a key molecule to acquire a neuroprotective phenotype in microglia
Cited by: 10
Author(s): Veronika E. Neubrand, Irene Forte-Lago, Marta Caro, Mario Delgado
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2021.650853

Identification of an Individualized Metabolism Prognostic Signature and Related Therapy Regimens in Early Stage Lung Adenocarcinoma
Cited by: 4
Author(s): Junjie Hu, Hua Yu, Lishan Sun, Yao Yan, Lele Zhang, Gening Jiang, Peng Zhang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-60810-z

The role of semen and seminal plasma in inducing large-scale genomic changes in the female porcine peri-ovulatory tract
Cited by: 22
Author(s): Manuel Álvarez‐Rodríguez, Cristina A. Martínez, Dominic Wright, Heriberto Rodríguez-Martinez
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2021.691288

Development and Validation of Predicting Nomograms for Craniopharyngioma: A Retrospective, Multiple-Center, Cohort Study
Cited by: 5
Author(s): Dingkang Xu, Qi Wei, Zhe Li, Yue Hu, Peizhu Hu, Shengqi Zhao, Dengpan Song, Shixiong Lei, Mingchu Zhang, Qiang Gao, Longxiao Zhang, Fangbo Lin, Yuchao Zuo, Xianzhi Liu, Ming Feng, Chunxiao Ma, Fuyou Guo
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.655302

CD155 Promotes the Progression of Cervical Cancer Cells Through AKT/mTOR and NF-κB Pathways
Cited by: 11
Author(s): Lu Liu, Ying Wang, Chen Geng, Aihong Wang, Sai Han, Xuewu You, Yu Sun, Junhua Zhang, Wenjing Lu, Youzhong Zhang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-62414-z

Transcriptomics in cancer revealed by Positron Emission Tomography radiomics
Cited by: 12
Author(s): Florent Tixier, Catherine Chèze-Le-Rest, Ulrike Schick, Brigitte Simon, Xavier Dufour, Stéphane Key, Olivier Pradier, Marc Aubry, Mathieu Hatt, Laurent Corcos, Dimitris Visvikis
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2021.678253

Development and Interpretation of a Genomic Instability Derived lncRNAs Based Risk Signature as a Predictor of Prognosis for Clear Cell Renal Cell Carcinoma Patients
Cited by: 14
Author(s): Huiying Yang, Xiufang Xiong, Hua Li
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2014.00163

Differential Angiogenic Gene Expression in TP53 Wild-Type and Mutant Ovarian Cancer Cell Lines
Cited by: 8
Author(s): Brittany Davidson, Jennifer M. Rubatt, David L. Corcoran, Deanna K. Teoh, Marcus Q. Bernardini, L. Grace, William John Soper, Andrew Berchuck, Sharareh Siamakpour-Reihani, Wei Chen, Kouros Owzar, Susan K. Murphy, Angeles Alvarez Secord
Software Mentions: 1
Published: over 10 years ago

10.3389/fonc.2020.01126

Reduced Expression of METTL3 Promotes Metastasis of Triple-Negative Breast Cancer by m6A Methylation-Mediated COL3A1 Up-Regulation
Cited by: 78
Author(s): Yu Shi, Chunlei Zheng, Yue Jin, Bowen Bao, Duo Wang, Kezuo Hou, Jing Feng, Shiying Tang, Xiujuan Qu, Yunpeng Liu, Xiaofang Che, Yuee Teng
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2021.606764

Aberrant Non-Coding RNA Expressed in Gastric Cancer and Its Diagnostic Value
Cited by: 6
Author(s): Zhuang Yu, Zeyin Rong, Jinxin Sheng, Zai Luo, Jianming Zhang, Tengfei Li, Zhongqi Zhu, Zhongmao Fu, Zhengjun Qiu, Chen Huang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-63840-9

Construction and analysis for differentially expressed long non-coding RNAs and mRNAs in acute myocardial infarction
Cited by: 10
Author(s): Ning Song, Xiangmei Li, Junyi Luo, Hua‐Jin Zhai, Qian Zhao, Xinrong Zhou, Fen Liu, Xue-He Zhang, Xiao‐Ming Gao
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-63904-w

Gene expression profiles for low-dose exposure to diethyl phthalate in rodents and humans: a translational study with implications for breast carcinogenesis
Cited by: 18
Author(s): Kalpana Gopalakrishnan, Vasily N. Aushev, Fabiana Manservisi, Laura Falcioni, Simona Panzacchi, Fiorella Belpoggi, Humberto Parada, Gail Garbowski, Hanina Hibshoosh, Regina M. Santella, Marilie D. Gammon, Susan L. Teitelbaum, Jia Chen
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2014.00308

The Activation of the Sox2 RR2 Pluripotency Transcriptional Reporter in Human Breast Cancer Cell Lines is Dynamic and Labels Cells with Higher Tumorigenic Potential
Cited by: 16
Author(s): Juan Manuel Iglesias, Olatz Leis, EstÃbaliz PÃ©rez Ruiz, Juan Gumuzio Barrie, Francisco García‐García, Ariane Aduriz, Izaskun Beloqui, Susana Hernández-García, Mariá Paz López-Mato, Joaquín Dopazo, Atanasio Pandiella, Javier A. Menendez, Ángel G. Martín
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-020-64356-y

Comprehensive analysis of the SLC16A gene family in pancreatic cancer via integrated bioinformatics
Cited by: 36
Author(s): Shan Yu, Yanshuang Wu, Chunlong Li, Zhipeng Qu, Ge Lou, Xiaorong Guo, Jingjing Ji, Nan Li, Mian Guo, Maomao Zhang, Lei Lei, Sheng Tai
Software Mentions: 1
Published: over 4 years ago

10.1186/1755-8794-7-13

Childhood abuse is associated with methylation of multiple loci in adult DNA
Cited by: 147
Author(s): Matthew Suderman, Nada Borghol, Jane J. Pappas, Snehal M Pinto Pereira, Marcus Pembrey, Clyde Hertzman, Chris Power, Moshe Szyf
Software Mentions: 1
Published: over 10 years ago

10.3389/fonc.2021.643159

A Novel Immune-Related Prognostic Biomarker and Target Associated With Malignant Progression of Glioma
Cited by: 3
Author(s): Yu Zhang, Xin Yang, Xiaolin Zhu, Zhuang-Zhuang Wang, Hao Bai, Junjie Zhang, Chunyan Hao, Hubin Duan
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-64524-0

Integration of whole-body [18F]FDG PET/MRI with non-targeted metabolomics can provide new insights on tissue-specific insulin resistance in type 2 diabetes
Cited by: 4
Author(s): Klev Diamanti, Robin Visvanathar, Maria J. Pereira, Marco Cavalli, Gang Pan, Chanchal Kumar, Stanko Skrtic, Ulf Risérus, Jan W. Eriksson, Joel Kullberg, Jan Komorowski, Claes Wadelius, Håkan Åhlström
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-65606-9

Bioinformatic analysis reveals the importance of epithelial-mesenchymal transition in the development of endometriosis
Cited by: 29
Author(s): Meihong Chen, Yilu Zhou, Hong Xu, Catherine M. Hill, Rob M. Ewing, Da He, Xiaoling Zhang, Yihua Wang
Software Mentions: 1
Published: over 4 years ago

10.1186/1755-8794-6-42

Gene profiling suggests a common evolution of bladder cancer subtypes
Cited by: 8
Author(s): Donna E. Hansel, Zhongfa Zhang, David Petillo, Bin Tean Teh
Software Mentions: 1
Published: about 11 years ago

10.3389/fonc.2020.539805

LncRNA-BLACAT1 Facilitates Proliferation, Migration and Aerobic Glycolysis of Pancreatic Cancer Cells by Repressing CDKN1C via EZH2-Induced H3K27me3
Cited by: 26
Author(s): Xin Zhou, Wei Gao, Huanhuan Hua, Zhipeng Jiang
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-66122-6

Anaesthetic-dependent changes in gene expression following acute and chronic exposure in the rodent brain
Cited by: 20
Author(s): Dannielle Upton, Kata Popovic, Roger Fulton, Michael Kassiou
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66872-3

Identification of core genes in the progression of endometrial cancer and cancer cell-derived exosomes by an integrative analysis
Cited by: 25
Author(s): Shuang Shi, Qiang Tan, Fuqiang Feng, Heping Huang, Jingjie Liang, Dingren Cao, Zhengguang Wang
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2020.560779

A Seven Immune-Related lncRNAs Model to Increase the Predicted Value of Lung Adenocarcinoma
Cited by: 43
Author(s): Jianping Li, Rui Li, Xiao Liu, Huo Chen, Tingting Liu, Jie Yao, Yi-Qing Qu
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-66868-z

Distinct abdominal and gluteal adipose tissue transcriptome signatures are altered by exercise training in African women with obesity
Cited by: 14
Author(s): Pamela A. Nono Nankam, Matthias Blüher, Stephanie Kehr, Nora Klöting, Knut Krohn, Kevin Adams, Peter F. Stadler, Amy E. Mendham, Julia H. Goedecke
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66221-4

Transcriptomic differences in MSA clinical variants
Cited by: 7
Author(s): Alexandra Pérez‐Soriano, Magdalena Arnal, Teresa Botta-Orfila, Darly M. Giraldo, Manel Fernández, Yaroslau Compta, Rubén Fernández‐Santiago, Mario Ezquerra, Gian Gaetano Tartaglia, Marı́a José Martı́, Esteban Muñoz, Javier Pagonabarraga, Francesc Valldeoriola, Jorge Hernández‐Vara, Serge Jauma Classen, Víctor Puente, Claustre Pont, Núria Caballol, Oriol de Fábregues, Asunción Ávila, Matilde Calopa, Carles Gaig, Pau Pástor, Montserrat Pujol, Joan Santamaría, Lluís Planellás, Ana Cámara
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67550-0

A novel protective role for microRNA-3135b in Golgi apparatus fragmentation induced by chemotherapy via GOLPH3/AKT1/mTOR axis in colorectal cancer cells
Cited by: 21
Author(s): Stephanie I. Nuñez‐Olvera, Bibiana Chávez‐Munguía, María Cruz del Rocío Terrones-Gurrola, Laurence A. Marchat, Jonathan Puente-Rivera, Erika Ruiz‐García, Alma D. Campos‐Parra, Carlos Vázquez‐Calzada, Erik Lizárraga-Verdugo, Rosalío Ramos‐Payán, Yarely M. Salinas‐Vera, César López-Camarillo
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67446-z

SnoRNA signatures in cartilage ageing and osteoarthritis
Cited by: 30
Author(s): Mandy J. Peffers, Alzbeta Chabronova, Panagiotis Balaskas, Yongxiang Fang, Philip Dyer, A. Cremers, Pieter J. Emans, Peter Z. Feczko, M.M. Caron, Tim J. M. Welting
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2020.545460

Circular RNA Circ-03955 Promotes Epithelial-Mesenchymal Transition in Osteosarcoma by Regulating miR-3662/Metadherin Pathway
Cited by: 11
Author(s): Zhengguang Wang, Mingsi Deng, Liangjian Chen, Weiguo Wang, Gengyan Liu, Dongbiao Liu, Zhipeng Han, Yong Zhou
Software Mentions: 1
Published: about 4 years ago

10.3389/fonc.2021.661653

miR-9-5p Mediates ABCC1 to Elevate the Sensitivity of Glioma Cells to Temozolomide
Cited by: 3
Author(s): Xiangrui Chen, Yanguo Zhang, Qiang Wang
Software Mentions: 1
Published: about 3 years ago

10.3389/fonc.2021.611038

CHI3L2 Is a Novel Prognostic Biomarker and Correlated With Immune Infiltrates in Gliomas
Cited by: 17
Author(s): Liling Liu, Yuan-Zhong Yang, Hao Duan, Jiahua He, Lu Sun, Wanming Hu, Jing Zeng
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.680642

Long Non-Coding RNA CCAT2 Promotes the Development of Esophageal Squamous Cell Carcinoma by Inhibiting miR-200b to Upregulate the IGF2BP2/TK1 Axis
Cited by: 15
Author(s): Xiaodan Wu, Yihui Fan, Yupeng Liu, Baogen Shen, Haimin Lu, Haitao Ma
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2019.01261

hsa_circ_0007841: A Novel Potential Biomarker and Drug Resistance for Multiple Myeloma
Cited by: 40
Author(s): Meng Gao, Chengyuan Li, Han Xiao, Hang Dong, Siyi Jiang, Yunfeng Fu, Liying Gong
Software Mentions: 1
Published: about 5 years ago

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