10.3390/biology10090939

HuD Regulates mRNA-circRNA-miRNA Networks in the Mouse Striatum Linked to Neuronal Development and Drug Addiction
Cited by: 7
Author(s): Michela Dell’Orco, Amir Elyaderani, Annika Vannan, Shobana Sekar, Gregory L. Powell, Winnie S. Liang, Janet L. Neisewander, Nora I. Perrone‐Bizzozero
Software Mentions: 1
Published: almost 5 years ago

10.3390/biology10070609

Human Trisomic iPSCs from Down Syndrome Fibroblasts Manifest Mitochondrial Alterations Early during Neuronal Differentiation
Cited by: 11
Author(s): Nunzia Mollo, M. Esposito, Miriam Aurilia, Roberta Scognamiglio, Rossella Accarino, Ferdinando Bonfiglio, Rita Cicatiello, Maria Charalambous, Claudio Procaccini, Teresa Micillo, Rita Genesio, Gaetano Calı̀, Agnese Secondo, Simona Paladino, Giuseppe Matarese, Gabriella De Vita, Anna Conti, Lucio Nitsch, Antonella Izzo
Software Mentions: 1
Published: about 5 years ago

10.3390/biology10030221

Gene Co-Expression Analysis of Human RNASEH2A Reveals Functional Networks Associated with DNA Replication, DNA Damage Response, and Cell Cycle Regulation
Cited by: 3
Author(s): Stefania Marsili, Ailone Tichon, Deepali L. Kundnani, Francesca Storici
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-63840-9

Construction and analysis for differentially expressed long non-coding RNAs and mRNAs in acute myocardial infarction
Cited by: 10
Author(s): Ning Song, Xiangmei Li, Junyi Luo, Hua‐Jin Zhai, Qian Zhao, Xinrong Zhou, Fen Liu, Xue-He Zhang, Xiao‐Ming Gao
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-63904-w

Gene expression profiles for low-dose exposure to diethyl phthalate in rodents and humans: a translational study with implications for breast carcinogenesis
Cited by: 18
Author(s): Kalpana Gopalakrishnan, Vasily N. Aushev, Fabiana Manservisi, Laura Falcioni, Simona Panzacchi, Fiorella Belpoggi, Humberto Parada, Gail Garbowski, Hanina Hibshoosh, Regina M. Santella, Marilie D. Gammon, Susan L. Teitelbaum, Jia Chen
Software Mentions: 1
Published: over 6 years ago

10.1186/2042-6410-5-8

The effects of perinatal testosterone exposure on the DNA methylome of the mouse brain are late-emerging
Cited by: 105
Author(s): Negar Ghahramani, Tuck C Ngun, Pao‐Yang Chen, Yuan Tian, Sangitha Krishnan, Stephanie Muir, Liudmilla Rubbi, Arthur P. Arnold, Geert J. De Vries, Nancy G. Forger, Matteo Pellegrini, Éric Vilain
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-020-64356-y

Comprehensive analysis of the SLC16A gene family in pancreatic cancer via integrated bioinformatics
Cited by: 36
Author(s): Shan Yu, Yanshuang Wu, Chunlong Li, Zhipeng Qu, Ge Lou, Xiaorong Guo, Jingjing Ji, Nan Li, Mian Guo, Maomao Zhang, Lei Lei, Sheng Tai
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-020-3380-6

m6Acorr: an online tool for the correction and comparison of m6A methylation profiles
Cited by: 6
Author(s): Jianwei Li, Yan Huang, Qinghua Cui, Yuan Zhou
Software Mentions: 1
Published: over 6 years ago

10.1186/s13293-017-0149-3

Sex differences in microRNA-mRNA networks: examination of novel epigenetic programming mechanisms in the sexually dimorphic neonatal hypothalamus
Cited by: 25
Author(s): Christopher P. Morgan, Tracy L. Bale
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-020-64524-0

Integration of whole-body [18F]FDG PET/MRI with non-targeted metabolomics can provide new insights on tissue-specific insulin resistance in type 2 diabetes
Cited by: 4
Author(s): Klev Diamanti, Robin Visvanathar, Maria J. Pereira, Marco Cavalli, Gang Pan, Chanchal Kumar, Stanko Skrtic, Ulf Risérus, Jan W. Eriksson, Joel Kullberg, Jan Komorowski, Claes Wadelius, Håkan Åhlström
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-65606-9

Bioinformatic analysis reveals the importance of epithelial-mesenchymal transition in the development of endometriosis
Cited by: 29
Author(s): Meihong Chen, Yilu Zhou, Hong Xu, Catherine M. Hill, Rob M. Ewing, Da He, Xiaoling Zhang, Yihua Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-018-2410-0

Discovering the ‘Dark matters’ in expression data of miRNA based on the miRNA-mRNA and miRNA-lncRNA networks
Cited by: 3
Author(s): Cong Pian, Guangle Zhang, Sanling Wu, Fēi Li
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13293-018-0213-7

Sex-related DNA methylation differences in B cell chronic lymphocytic leukemia
Cited by: 23
Author(s): Shuchun Lin, Yun Liu, Lynn R. Goldin, Chao Lyu, Xiangyin Kong, Yan Zhang, Neil E. Caporaso, Song Xiang, Ying Gao
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-66122-6

Anaesthetic-dependent changes in gene expression following acute and chronic exposure in the rodent brain
Cited by: 20
Author(s): Dannielle Upton, Kata Popovic, Roger Fulton, Michael Kassiou
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-66872-3

Identification of core genes in the progression of endometrial cancer and cancer cell-derived exosomes by an integrative analysis
Cited by: 25
Author(s): Shuang Shi, Qiang Tan, Fuqiang Feng, Heping Huang, Jingjie Liang, Dingren Cao, Zhengguang Wang
Software Mentions: 1
Published: about 6 years ago

10.1186/s40659-018-0175-6

Bioinformatics analysis of microarray data to reveal the pathogenesis of diffuse intrinsic pontine glioma
Cited by: 16
Author(s): Wei Li, Fei He, Wen Zhang, Wenhua Chen, Bo Yu
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-020-66868-z

Distinct abdominal and gluteal adipose tissue transcriptome signatures are altered by exercise training in African women with obesity
Cited by: 14
Author(s): Pamela A. Nono Nankam, Matthias Blüher, Stephanie Kehr, Nora Klöting, Knut Krohn, Kevin Adams, Peter F. Stadler, Amy E. Mendham, Julia H. Goedecke
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-66221-4

Transcriptomic differences in MSA clinical variants
Cited by: 7
Author(s): Alexandra Pérez‐Soriano, Magdalena Arnal, Teresa Botta-Orfila, Darly M. Giraldo, Manel Fernández, Yaroslau Compta, Rubén Fernández‐Santiago, Mario Ezquerra, Gian Gaetano Tartaglia, Marı́a José Martı́, Esteban Muñoz, Javier Pagonabarraga, Francesc Valldeoriola, Jorge Hernández‐Vara, Serge Jauma Classen, Víctor Puente, Claustre Pont, Núria Caballol, Oriol de Fábregues, Asunción Ávila, Matilde Calopa, Carles Gaig, Pau Pástor, Montserrat Pujol, Joan Santamaría, Lluís Planellás, Ana Cámara
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-67550-0

A novel protective role for microRNA-3135b in Golgi apparatus fragmentation induced by chemotherapy via GOLPH3/AKT1/mTOR axis in colorectal cancer cells
Cited by: 21
Author(s): Stephanie I. Nuñez‐Olvera, Bibiana Chávez‐Munguía, María Cruz del Rocío Terrones-Gurrola, Laurence A. Marchat, Jonathan Puente-Rivera, Erika Ruiz‐García, Alma D. Campos‐Parra, Carlos Vázquez‐Calzada, Erik Lizárraga-Verdugo, Rosalío Ramos‐Payán, Yarely M. Salinas‐Vera, César López-Camarillo
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-67446-z

SnoRNA signatures in cartilage ageing and osteoarthritis
Cited by: 30
Author(s): Mandy J. Peffers, Alzbeta Chabronova, Panagiotis Balaskas, Yongxiang Fang, Philip Dyer, A. Cremers, Pieter J. Emans, Peter Z. Feczko, M.M. Caron, Tim J. M. Welting
Software Mentions: 1
Published: about 6 years ago

10.1186/s40659-017-0108-9

Analysis of gene expression changes associated with human carcinoma-associated fibroblasts in non-small cell lung carcinoma
Cited by: 16
Author(s): Xiaofen Wu, Lei Ruan, Yi Yang, Qi Mei
Software Mentions: 1
Published: over 9 years ago

10.1016/j.biopsych.2021.03.009

Developmental Profile of Psychiatric Risk Associated With Voltage-Gated Cation Channel Activity
Cited by: 10
Author(s): Nicholas E. Clifton, Leonardo Collado‐Torres, Emily E. Burke, Antonio F. Pardiñas, Janet Harwood, Arianna Di Florio, James Walters, Michael John Owen, Daniel R. Weinberger, Peter Holmans, Andrew E. Jaffe, Jérémy Hall
Software Mentions: 1
Published: almost 5 years ago

10.1242/bio.027391

miR-9a mediates the role of Lethal giant larvae as an epithelial growth inhibitor in Drosophila
Cited by: 5
Author(s): Scott G. Daniel, Atlantis Dawn Russ, Kathryn M. Guthridge, Ammad Raina, Patricia S. Estes, Linda M. Parsons, Helena E. Richardson, Joyce A. Schroeder, Daniela C. Zarnescu
Software Mentions: 1
Published: over 9 years ago

10.6026/97320630017348

Molecular docking analysis of stachydrine and sakuranetin with IL-6 and TNF-α in the context of inflammation
Cited by: 12
Author(s): Inamul Hasan Madar, Ghazala Sultan, Iftikhar Aslam Tayubi, Atif Noorul Hasan, Bandana Pahi, Anjali Rai, Pravitha Kasu Sivanandan, Tamizhini Loganathan, M. Yasmin Begum, Sneha Rai
Software Mentions: 1
Published: over 5 years ago

10.6026/97320630015853

Genomic profiling of Nipah virus using NGS driven RNA-Seq expression data
Cited by: 1
Author(s): Zakiul Hassan, Shakil Ahmed, Md Marufuzzaman Khan, Mohammad Ahsan Uddin, Fahmida Chowdhury, Md. Kamruzzaman
Software Mentions: 1
Published: over 6 years ago

10.1093/bioinformatics/btz256

Hybrid analysis of gene dynamics predicts context-specific expression and offers regulatory insights
Cited by: 2
Author(s): Justin D. Finkle, Neda Bagheri
Software Mentions: 1
Published: over 7 years ago

10.1186/s13040-018-0174-8

Integrative analysis of gene expression and methylation data for breast cancer cell lines
Cited by: 8
Author(s): Catherine Li, Juyon Lee, Jessica Ding, Shuying Sun
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-020-68890-7

Estrogens decrease osteoclast number by attenuating mitochondria oxidative phosphorylation and ATP production in early osteoclast precursors
Cited by: 41
Author(s): Ha‐Neui Kim, Filipa Ponte, Intawat Nookaew, Serra Ucer Ozgurel, Adriana Marques-Carvalho, Srividhya Iyer, Aaron Warren, Nùkhet Aykin-Burns, Kimberly J. Krager, Vilma A. Sardão, Li Han, Rafael de Cabo, Haibo Zhao, Robert L. Jilka, Stavros C. Manolagas, Maria Almeida
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-69164-y

Systemic lipid dysregulation is a risk factor for macular neurodegenerative disease
Cited by: 23
Author(s): Roberto Bonelli, Sasha M Woods, Brendan R E Ansell, Tjebo Heeren, Catherine Egan, Kamron Khan, Robyn H. Guymer, Jennifer Trombley, Martin Friedlander, Melanie Bahlo, Marcus Fruttiger
Software Mentions: 1
Published: about 6 years ago

10.1186/s13040-020-00217-8

Merging microarray studies to identify a common gene expression signature to several structural heart diseases
Cited by: 9
Author(s): Olga Fajarda, Sara Duarte-Pereira, Raquel M. Silva, José Luís Oliveira
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-68988-y

Modulating electrophysiology of motor neural networks via optogenetic stimulation during neurogenesis and synaptogenesis
Cited by: 7
Author(s): Gelson J. Pagan‐Diaz, Jenny Drnevich, Karla P. Ramos-Cruz, Richard Sam, Parijat Sengupta, Rashid Bashir
Software Mentions: 1
Published: about 6 years ago

10.1089/big.2015.0057

Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases
Cited by: 36
Author(s): Venkata Satagopam, Wei Gu, Serge Eifes, Piotr Gawron, Marek Ostaszewski, Stephan Gebel, Adriano Barbosa-Silva, Rudi Balling, Reinhard Schneider
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-020-69691-8

Survival differences and associated molecular signatures of DNMT3A-mutant acute myeloid leukemia patients
Cited by: 15
Author(s): Chris Lauber, Nádia Correia, Andreas Trumpp, Michael A. Rieger, Anna Dolnik, Lars Bullinger, Ingo Roeder, Michael Seifert
Software Mentions: 1
Published: about 6 years ago

10.1136/bmjopen-2020-043644

Protocol for a prospective, observational, deep phenotyping study on adipose epigenetic and lipidomic determinants of metabolic homoeostasis in South Asian Indians: the Indian Diabetes and Metabolic Health (InDiMeT) study
Cited by: 1
Author(s): Nikhil Nadiger, Sarita Devi, Tinku Thomas, Ambily Sivadas, Rebecca Raj-Kuriyan, Sridar Govindaraj, Anura V Kurpad, Arpita Mukhopadhyay
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.103804

<i>TRIM28</i> is a distinct prognostic biomarker that worsens the tumor immune microenvironment in lung adenocarcinoma
Cited by: 11
Author(s): Jie Liu, Xiao Han, Lijuan Chen, Dong Han, Xupeng Mu, Xiufeng Hu, Hongbo Wu, Huijuan Wu, Wenjing Liu, Yanqiu Zhao
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2105-11-18

Selecting high-dimensional mixed graphical models using minimal AIC or BIC forests
Cited by: 72
Author(s): D.J. Edwards, Gabriel C. G. de Abreu, Rodrigo Labouriau
Software Mentions: 1
Published: over 16 years ago

10.1186/s12917-015-0575-6

The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds
Cited by: 39
Author(s): Jacqueline Smith, Jean-Rémy Sadeyen, David Cavanagh, Pete Kaiser, David W. Burt
Software Mentions: 1
Published: almost 11 years ago

10.1186/1746-6148-9-138

Five markers useful for the distinction of canine mammary malignancy
Cited by: 12
Author(s): Karol Pawłowski, Henryk Maciejewski, Kinga Majchrzak, I. Dolka, Jan A. Mol, T. Motyl, Magdalena Król
Software Mentions: 1
Published: about 13 years ago

10.1186/1746-6148-8-35

The gene expression profiles of canine mammary cancer cells grown with carcinoma-associated fibroblasts (CAFs) as a co-culture in vitro
Cited by: 19
Author(s): Magdalena Król, Karol Pawłowski, K. Szyszko, Henryk Maciejewski, I. Dolka, Elisabetta Manuali, Michał Jank, T. Motyl
Software Mentions: 1
Published: over 14 years ago

10.1155/2017/2487297

2-Deoxy-D-glucose Restore Glucocorticoid Sensitivity in Acute Lymphoblastic Leukemia via Modification of N-Linked Glycosylation in an Oxygen Tension-Independent Manner
Cited by: 4
Author(s): Zaira Leni, Paulina Ćwiek, Valeriya Dimitrova, Andrea S. Dulcey, Nicola Zamboni, Cédric Simillion, Geetha Rossi, Kurt Leibundgut, Alexandre Arcaro
Software Mentions: 1
Published: over 9 years ago

10.1186/1746-6148-9-78

Gene expression profiles in canine mammary carcinomas of various grades of malignancy
Cited by: 13
Author(s): Karol Pawłowski, Henryk Maciejewski, I. Dolka, Jan A. Mol, T. Motyl, Magdalena Król
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-020-70687-7

Altered serum protein levels in frontotemporal dementia and amyotrophic lateral sclerosis indicate calcium and immunity dysregulation
Cited by: 22
Author(s): Jared S. Katzeff, Fiona Bright, Kitty Lo, Jillian J. Kril, Angela Connolly, Ben Crossett, Lars M. Ittner, Michael Kassiou, Clement T. Loy, John R. Hodges, Olivier Piguet, Matthew C. Kiernan, Glenda M. Halliday, Woojin Scott Kim
Software Mentions: 1
Published: about 6 years ago

10.1186/s12859-017-1499-x

A novel statistical approach for identification of the master regulator transcription factor
Cited by: 14
Author(s): Sinjini Sikdar, Susmita Datta
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-70832-2

Machine learning for RNA sequencing-based intrinsic subtyping of breast cancer
Cited by: 30
Author(s): Silvia Cascianelli, Ivan Molineris, Claudio Isella, Marco Masseroli, Enzo Medico
Software Mentions: 1
Published: almost 6 years ago

10.1155/2019/2510936

Diphenyl Ditelluride: Redox-Modulating and Antiproliferative Properties
Cited by: 5
Author(s): Cristiano Trindade, André Luiz Mendes Juchem, Temenouga Nikolova Guecheva, Iuri Marques de Oliveira, Priscila dos Santos Silveira, José Eduardo Vargas, Renato D Puga, Cláudia Pessoa, João Antônio Pêgas Henriques
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-71852-8

The synergistic interaction of thermal stress coupled with overstocking strongly modulates the transcriptomic activity and immune capacity of rainbow trout (Oncorhynchus mykiss)
Cited by: 16
Author(s): Alexander Rebl, Tomáš Korytář, Andreas Borchel, Ralf Bochert, Joanna Ewa Strzelczyk, Tom Goldammer, Marieke Verleih
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12894-021-00857-w

Exploring microRNA target genes and identifying hub genes in bladder cancer based on bioinformatic analysis
Cited by: 3
Author(s): Hongjian Wu, Wubing Jiang, Guanghua Ji, Rong Xu, Gaobo Zhou, Hongyuan Yu
Software Mentions: 1
Published: about 5 years ago

10.1186/1752-0509-7-69

Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice
Cited by: 17
Author(s): Nicolas Tchitchek, Amie J. Eisfeld, Jennifer Tisoncik-Go, Laurence Josset, Lisa E. Gralinski, Christophe Bécavin, Susan C. Tilton, Bobbie-Jo M. Webb-Robertson, Martin T. Ferris, Allison L. Totura, Chengjun Liu, Gabriele Neumann, Thomas O. Metz, Richard D. Smith, Katrina M. Waters, Ralph S. Baric, Yoshihiro Kawaoka, Michael G. Katze
Software Mentions: 1
Published: about 13 years ago

10.1186/s12859-018-2059-8

Heuristic algorithms for feature selection under Bayesian models with block-diagonal covariance structure
Cited by: 9
Author(s): Ali Foroughi pour, Lori A. Dalton
Software Mentions: 1
Published: over 8 years ago

10.1186/s13075-017-1382-1

Genome-wide DNA methylation profile analysis identifies differentially methylated loci associated with ankylosis spondylitis
Cited by: 31
Author(s): Jiangcan Hao, Lu Yang, Jiawen Xu, Wenyu Wang, Yan Wen, Awen He, Qunping Fan, Xiong Guo, Feng Zhang
Software Mentions: 1
Published: about 9 years ago

10.1186/ar3695

Tight regulation of wingless-type signaling in the articular cartilage - subchondral bone biomechanical unit: transcriptomics in Frzb-knockout mice
Cited by: 39
Author(s): Liesbet Lodewyckx, F. Cailotto, Sarah Thysen, Frank P. Luyten, Rik Lories
Software Mentions: 1
Published: over 14 years ago

10.18632/aging.203056

Comprehensive analysis of the competing endogenous circRNA-lncRNA-miRNA-mRNA network and identification of a novel potential biomarker for hepatocellular carcinoma
Cited by: 28
Author(s): Lu Zhang, Haisu Tao, Li Jiang, Erlei Zhang, Huifang Liang, Bixiang Zhang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-72955-y

Arabidopsis, tobacco, nightshade and elm take insect eggs as herbivore alarm and show similar transcriptomic alarm responses
Cited by: 14
Author(s): Tobias Lortzing, Reinhard Kunze, Anke Steppuhn, Monika Hilker, Tobias Lortzing
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22041523

Multiomics Integration in Skin Diseases with Alterations in Notch Signaling Pathway: PlatOMICs Phase 1 Deployment
Cited by: 8
Author(s): Lucas André Cavalcanti Brandão, Paola Maura Tricarico, Rossella Gratton, Almerinda Agrelli, Luisa Zupin, Haissam Abou-Saleh, Romero Marinho de Moura, Sérgio Crovella
Software Mentions: 1
Published: over 5 years ago

10.1186/1752-0509-4-68

Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation
Cited by: 9
Author(s): Subir Kumar Nandy, Paula Jouhten, Jens Nielsen
Software Mentions: 1
Published: about 16 years ago

10.1186/1752-0509-7-80

Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder
Cited by: 23
Author(s): Ruoting Yang, Bernie J. Daigle, Seid Muhie, Rasha Hammamieh, Marti Jett, Linda R. Petzold, Francis J. Doyle
Software Mentions: 1
Published: about 13 years ago

10.1186/1752-0509-2-101

Genetic and systems level analysis of Drosophila sticky/citron kinase and dFmr1 mutants reveals common regulation of genetic networks
Cited by: 9
Author(s): Christopher R. Bauer, Andrew Michael Epstein, Sarah Sweeney, Daniela C. Zarnescu, Giovanni Bosco
Software Mentions: 1
Published: over 17 years ago

10.1038/s41598-020-72551-0

Identifying a nasal gene expression signature associated with hyperinflation and treatment response in severe COPD
Cited by: 2
Author(s): Alen Faiz, Kai Imkamp, Erica van der Wiel, Ilse M. Boudewijn, Gerard H. Koppelman, Corry‐Anke Brandsma, Huib A. M. Kerstjens, Wim Timens, Sebastiaan J. Vroegop, Henk Pasma, Wim Boersma, Pascal Wielders, Frank van den Elshout, Khaled Mansour, Katrina Steiling, Avrum Spira, Marc E. Lenburg, Irene H. Heijink, Dirkje S. Postma, Maarten van den Berge
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13104-018-4020-3

Transcriptomes of microglia in experimental cerebral malaria in mice in the presence and absence of Type I Interferon signaling
Cited by: 5
Author(s): Carlos Talavera-López, Barbara Capuccini, Richard Mitter, Jing-wen Lin, Jean Langhorne
Software Mentions: 1
Published: over 7 years ago

10.1186/s13075-019-2082-9

Integrated systems analysis of salivary gland transcriptomics reveals key molecular networks in Sjögren’s syndrome
Cited by: 9
Author(s): Hong Ki Min, Su‐Jin Moon, Kyung-Su Park, Ki-Jo Kim
Software Mentions: 1
Published: over 6 years ago

10.1186/s13104-020-05121-2

Physical activity and blood gene expression profiles: the Norwegian Women and Cancer (NOWAC) Post-genome cohort
Cited by: 1
Author(s): Karina Standahl Olsen, Marko Lukic, Kristin Benjaminsen Borch
Software Mentions: 1
Published: about 6 years ago

10.1007/s00204-020-02808-0

Perfluorooctanoic acid (PFOA), perfluorooctane sulfonic acid (PFOS), and perfluorononanoic acid (PFNA) increase triglyceride levels and decrease cholesterogenic gene expression in human HepaRG liver cells
Cited by: 43
Author(s): Jochem Louisse, Deborah Rijkers, Geert Stoopen, Aafke W. F. Janssen, Martijn Staats, L.A.P. Hoogenboom, Sander Kersten, Ad Peijnenburg
Software Mentions: 1
Published: about 6 years ago

10.1186/s13104-019-4410-1

Unique microglia expression profile in developing white matter
Cited by: 20
Author(s): Ori Staszewski, Nora Hagemeyer
Software Mentions: 1
Published: about 7 years ago

10.1186/1756-0500-6-428

Parallel deep transcriptome and proteome analysis of zebrafish larvae
Cited by: 15
Author(s): Magnus Palmblad, Christiaan V. Henkel, Ron P. Dirks, Annemarie H. Meijer, André M. Deelder, Herman P. Spaink
Software Mentions: 1
Published: almost 13 years ago

10.1186/1756-0500-7-871

miRNome of inflammatory breast cancer
Cited by: 35
Author(s): D. V. Maltseva, Vladimir Galatenko, Timur R. Samatov, Svetlana Zhikrivetskaya, N. A. Khaustova, И. Н. Нечаев, M. Yu. Shkurnikov, A. V. Lebedev, Irina Mityakina, А. Д. Каприн, Udo Schumacher, Alexander G. Tonevitsky
Software Mentions: 1
Published: over 11 years ago

10.1186/s13104-015-1567-0

Derivation of induced pluripotent stem cells from orangutan skin fibroblasts
Cited by: 22
Author(s): Krishna Ramaswamy, Wing Yan Yik, Xiaoming Wang, Erin N. Oliphant, Wange Lu, Darryl Shibata, Oliver A. Ryder, Joseph G. Hacia
Software Mentions: 1
Published: almost 11 years ago

10.1186/1756-0500-5-40

Factors affecting the yield of microRNAs from laser microdissectates of formalin-fixed tissue sections
Cited by: 6
Author(s): Santosh K. Patnaik, Eric Kannisto, Sai Yendamuri
Software Mentions: 1
Published: over 14 years ago

10.1186/s13104-021-05635-3

Integrated microRNA and mRNA gene expression in peripheral blood mononuclear cells in response to acute psychosocial stress: a repeated-measures within-subject pilot study
Cited by: 1
Author(s): Magdalena Jurkiewicz, Anett Mueller-Alcazar, Dirk Moser, Indralatha Jayatilaka, Anatoly Mikhailik, Jamie Ferri, Nia Fogelman, Turhan Canli
Software Mentions: 1
Published: about 5 years ago

10.1186/s12890-017-0472-9

Unsupervised gene expression analyses identify IPF-severity correlated signatures, associated genes and biomarkers
Cited by: 24
Author(s): Yunguan Wang, Jaswanth Yella, Jing Chen, Francis X. McCormack, Satish K. Madala, Anil G. Jegga
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2466-11-39

The asthma candidate gene NPSR1 mediates isoform specific downstream signalling
Cited by: 22
Author(s): Christina Orsmark-Pietras, Johanna Vendelin, Francesca Anedda, Sara Bruce, Mikael Adner, L. Sundman, Ville Pulkkinen, Harri Alenius, Mauro D’Amato, Cilla Söderhäll, Juha Kere
Software Mentions: 1
Published: about 15 years ago

10.1007/s00204-016-1723-x

Model-based contextualization of in vitro toxicity data quantitatively predicts in vivo drug response in patients
Cited by: 16
Author(s): Christoph Thiel, Henrik Cordes, Isabel Conde, José V. Castell, Lars M. Blank, Lars Kuepfer
Software Mentions: 1
Published: over 10 years ago

10.1186/s12890-021-01549-9

GPC3 affects the prognosis of lung adenocarcinoma and lung squamous cell carcinoma
Cited by: 6
Author(s): Jing Ning, Shenyi Jiang, Xiaoxi Li, Yang Wang, Xuhong Deng, Zhiqiang Zhang, Lijie He, Daqing Wang, Youyu Jiang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-77732-5

Spontaneous intake of essential oils after a negative postnatal experience has long-term effects on blood transcriptome in chickens
Cited by: 6
Author(s): Aline Foury, Anne Collin, Jean‐Christophe Helbling, Christine Leterrier, Marie‐Pierre Moisan, Laurence Guilloteau
Software Mentions: 1
Published: over 5 years ago

10.1186/s12884-021-03777-7

Differential circular RNA expression profiles in umbilical cord blood exosomes from preeclampsia patients
Cited by: 7
Author(s): Mingtao Cao, Juan Wen, Chaozhi Bu, Chunyan Li, Yongcheng Lin, Hong Zhang, Yanfang Gu, Zhonghua Shi, Yan Zhang, Wei Long, Le Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-016-0740-5

Fusarium oxysporum f.sp. radicis-lycopersici induces distinct transcriptome reprogramming in resistant and susceptible isogenic tomato lines
Cited by: 40
Author(s): Daniele Manzo, Francesca Ferriello, Gerardo Puopolo, A. Zoina, Daniela D’Esposito, Luca Tardella, Alberto Ferrarini, Maria Raffaella Ercolano
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-78207-3

Maternal proteomic profiling reveals alterations in lipid metabolism in late-onset fetal growth restriction
Cited by: 9
Author(s): Cristina Paulés, L. Youssef, J. Miranda, F. Crovetto, Josep Marı́a Estanyol, Guerau Fernández, F. Crispi, E. Gratacós
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2229-14-108

Day and night heat stress trigger different transcriptomic responses in green and ripening grapevine (vitis vinifera) fruit
Cited by: 134
Author(s): Markus Rienth, Laurent Torregrosa, Nathalie Luchaire, Ratthaphon Chatbanyong, David Lecourieux, Mary T. Kelly, Charles Romieu
Software Mentions: 1
Published: over 12 years ago

10.1155/2020/7658921

Microarray Analysis of Small Extracellular Vesicle-Derived miRNAs Involved in Oxidative Stress of RPE Cells
Cited by: 4
Author(s): Ke Mao, Xiang Wu
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2229-11-120

Global transcriptome analysis of two ameiotic1 alleles in maize anthers: defining steps in meiotic entry and progression through prophase I
Cited by: 28
Author(s): Guo-Ling Nan, Arnaud Ronceret, Rachel Wang, John Fernandes, W. Zacheus Cande, Virginia Walbot
Software Mentions: 1
Published: over 15 years ago

10.1007/s00204-020-02697-3

Calretinin is a novel candidate marker for adverse ovarian effects of early life exposure to mixtures of endocrine disruptors in the rat
Cited by: 6
Author(s): Hanna Katarina Lilith Johansson, Terje Svingen, Julie Boberg, Paul A. Fowler, David Stead, Anne Marie Vinggaard, Panagiotis Filis
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-020-2317-6

Comparative transcriptome analyses of fruit development among pears, peaches, and strawberries provide new insights into single sigmoid patterns
Cited by: 18
Author(s): Mao-Song Pei, Suhao Cao, Lei Wu, Guo‐Ming Wang, Zhihua Xie, Chao Gu, Shaoling Zhang
Software Mentions: 1
Published: over 6 years ago

10.1007/s00204-018-2239-3

Prenatal arsenic exposure is associated with increased plasma IGFBP3 concentrations in 9-year-old children partly via changes in DNA methylation
Cited by: 29
Author(s): Anda R. Gliga, Karin Engström, Maria Kippler, Helena Skröder, Sultan Ahmed, Marie Vahter, Rubhana Raqib, Karin Broberg
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-020-79598-z

Blocking PDGF-CC signaling ameliorates multiple sclerosis-like neuroinflammation by inhibiting disruption of the blood–brain barrier
Cited by: 13
Author(s): Manuel Zeitelhofer, Milena Z. Adzemovic, Christine Moessinger, Christina Stefanitsch, Carina Strell, Lars Muhl, Lou Brundin, Linda Fredriksson, Tomas Olsson, Ulf Eriksson, Ingrid Nilsson
Software Mentions: 1
Published: over 5 years ago

10.1007/s00204-014-1279-6

From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effects
Cited by: 70
Author(s): Nina V. Balmer, Stefanie Klima, Eugen Rempel, Violeta N. Ivanova, Raivo Kolde, Matthias K. Weng, Kesavan Meganathan, Margit Henry, Agapios Sachinidis, Michael R. Berthold, Jan G. Hengstler, Jörg Rahnenführer, Tanja Waldmann, Marcel Leist
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2229-13-27

Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids
Cited by: 48
Author(s): Hyun Jo Koo, Eric T. McDowell, Xiaoqiang Ma, Kevin Greer, Jeremy Kapteyn, Zhengzhi Xie, Anne Descour, Hye Ran Kim, Yeisoo Yu, David Kudrna, Rod A. Wing, Carol Soderlund, David R. Gang
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2229-11-173

SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus
Cited by: 135
Author(s): Steven G. Hussey, Eshchar Mizrachi, Antanas Spokevicius, Gerd Bossinger, David Kenneth Berger, Alexander Andrew Myburg
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2229-10-134

Delineating the structural, functional and evolutionary relationships of sucrose phosphate synthase gene family II in wheat and related grasses
Cited by: 13
Author(s): Shailendra Sharma, Nese Sreenivasulu, Vokkaliga T. Harshavardhan, Christiane Seiler, Shiveta Sharma, Zaynali Nezhad Khalil, Eduard Akhunov, Sunish K. Sehgal, Marion S. Röder
Software Mentions: 1
Published: over 16 years ago

10.1186/s12870-020-2258-0

Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators
Cited by: 9
Author(s): Sabine Guillaumie, Stéphane Decroocq, Nathalie Ollat, Serge Delrot, Éric Gomès, Sarah Jane Cookson
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2229-9-4

Linkage mapping of putative regulator genes of barley grain development characterized by expression profiling
Cited by: 11
Author(s): Christof Pietsch, Nese Sreenivasulu, Ulrich Wobus, Marion S. Röder
Software Mentions: 1
Published: over 17 years ago

10.1186/1472-6793-13-9

Dynamically regulated miRNA-mRNA networks revealed by exercise
Cited by: 99
Author(s): Alexander G. Tonevitsky, D. V. Maltseva, Asghar Abbasi, Timur R. Samatov, D. A. Sakharov, M. Yu. Shkurnikov, A. V. Lebedev, Vladimir Galatenko, Anatoly I. Grigoriev, Hinnak Northoff
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-020-79611-5

Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance
Cited by: 8
Author(s): Jan Félix, Claire Siebert, Julia Novion Ducassou, Jérôme Nigou, Pierre Garcia, Angélique Fraudeau, Karine Huard, Caroline Mas, Céline Brochier-Armanet, Yohann Couté, Irina Gutsche, Patricia Renesto
Software Mentions: 1
Published: over 5 years ago

10.3390/nu10050547

A Vitamin E-Enriched Antioxidant Diet Interferes with the Acute Adaptation of the Liver to Physical Exercise in Mice
Cited by: 8
Author(s): Miriam Hoene, Martin Irmler, Johannes Beckers, Martin Hrabé de Angelis, Hans‐Ulrich Häring, Cora Weigert
Software Mentions: 1
Published: over 8 years ago

10.1007/s00204-020-02779-2

Hepatotoxic pyrrolizidine alkaloids induce DNA damage response in rat liver in a 28-day feeding study
Cited by: 24
Author(s): Johanna Ebmeyer, Josef Daniel Rasinger, Jan G. Hengstler, Dirk Schaudien, Otto Creutzenberg, Alfonso Lampen, Albert Braeuning, Stefanie Hessel‐Pras
Software Mentions: 1
Published: over 6 years ago

10.1186/s12903-021-01827-2

Association between chronic periodontitis and the risk of Alzheimer’s disease: combination of text mining and GEO dataset
Cited by: 8
Author(s): Zhengye Jiang, Yanxi Shi, Wenpeng Zhao, Li-Wei Zhou, Bingchang Zhang, Yuanyuan Xie, Yaya Zhang, Guowei Tan, Zhanxiang Wang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13690-021-00588-2

Identification of a prognostic long noncoding RNA signature in lung squamous cell carcinoma: a population-based study with a mean follow-up of 3.5 years
Cited by: 7
Author(s): Rongjiong Zheng, Mengdi Zheng, Mingming Wang, Feijie Lu, Meiling Hu
Software Mentions: 1
Published: over 5 years ago

10.1007/s00403-014-1476-4

The effect of two endogenous retinoids on the mRNA expression profile in human primary keratinocytes, focusing on genes causing autosomal recessive congenital ichthyosis
Cited by: 13
Author(s): Hans Törmä, Anders Bergström, G. Ghiasifarahani, Berit Berne
Software Mentions: 1
Published: about 12 years ago

10.1186/s12886-020-01381-5

Identification of potential molecular targets associated with proliferative diabetic retinopathy
Cited by: 6
Author(s): Dewang Shao, Shang He, Zi Ye, Xuyou Zhu, Wei Sun, Wei Fu, Tianju Ma, Zhaohui Li
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/6634247

Development and Validation of a Nine-Redox-Related Long Noncoding RNA Signature in Renal Clear Cell Carcinoma
Cited by: 41
Author(s): Qi‐Dong Xia, Xiufen Yang, Junlin Lu, Chen‐Qian Liu, Jian‐Xuan Sun, Cong Liu, Shaogang Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12868-016-0333-0

Poly(ADP-ribose) polymerase inhibitors activate the p53 signaling pathway in neural stem/progenitor cells
Cited by: 17
Author(s): Akiko Okuda, Shu Kurokawa, Masanori Takehashi, Aika Maeda, Katsuya Fukuda, Yukari Kubo, Hyuma Nogusa, Tomoka Takatani‐Nakase, Shujiro Okuda, Kunihiro Ueda, Seigo Tanaka
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2202-13-126

High throughput analysis reveals dissociable gene expression profiles in two independent neural systems involved in the regulation of social behavior
Cited by: 22
Author(s): Tyler J. Stevenson, Kirstin Replogle, Jenny Drnevich, David F. Clayton, Gregory F. Ball
Software Mentions: 1
Published: almost 14 years ago