bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1186/s12920-021-01087-7

Integrated bioinformatics analysis of core regulatory elements involved in keloid formation
Cited by: 4
Author(s): Chuying Li, Mei-Tong Jin, Yinli Luo, Zhehu Jin, Long-Quan Pi
Software Mentions: 1
Published: almost 5 years ago

10.3390/biomedicines9081073

Treatment with PCSK9 Inhibitors in Patients with Familial Hypercholesterolemia Lowers Plasma Levels of Platelet-Activating Factor and Its Precursors: A Combined Metabolomic and Lipidomic Approach
Cited by: 8
Author(s): Alessandro Di Minno, Roberta Clara Orsini, Mattia Chiesa, Viviana Cavalca, Ilenia Calcaterra, Maria Tripaldella, Andrea Anesi, Susanna Fiorelli, Sonia Eligini, Gualtiero I. Colombo, Elena Tremoli, Benedetta Porro, Matteo Nicola Dario Di Minno
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2020.01008

Identification of Immune-Related Prognostic Biomarkers Based on the Tumor Microenvironment in 20 Malignant Tumor Types With Poor Prognosis
Cited by: 8
Author(s): Yu Liu, Hao Zhou, Jing Zheng, Xiaojun Zeng, Wei Yu, Wei Liu, Gan Huang, Yang Zhang, Weiling Fu
Software Mentions: 1
Published: about 6 years ago

10.3389/fonc.2020.00333

Alterations in Immune-Related Genes as Potential Marker of Prognosis in Breast Cancer
Cited by: 21
Author(s): Bei Li, Rongxin Geng, Qi Wu, Qian Yang, Si Sun, Shan Zhu, Zhiliang Xu
Software Mentions: 1
Published: over 6 years ago

10.3390/biomedicines9080882

Predicting Agents That Can Overcome 5-FU Resistance in Colorectal Cancers via Pharmacogenomic Analysis
Cited by: 5
Author(s): Tsui-Chin Huang, Kuan-Chieh Peng, Tai Chih Kuo, Li-Chun Lin, Bai-Chia Liu, Shu-Ping Ye, Chien-Chou Chu, Shih Min Hsia, Ho‐Myung Chang
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/7394344

PP2 Ameliorates Renal Fibrosis by Regulating the NF-κB/COX-2 and PPARγ/UCP2 Pathway in Diabetic Mice
Cited by: 11
Author(s): Jinying Wei, Xia Deng, Li Yang, Runmei Li, Zhaohua Yang, Xiuyuan Li, Shan Song, Yonghong Shi, Huijun Duan, Haijiang Wu
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2020.567021

JAG1, Regulated by microRNA-424-3p, Involved in Tumorigenesis and Epithelial–Mesenchymal Transition of High Proliferative Potential-Pituitary Adenomas
Cited by: 9
Author(s): Yiyuan Chen, Bin Li, Jiaxuan Feng, Qiuyue Fang, Jinhua Cheng, Weiyan Xie, Chuzhong Li, Sen Cheng, Yazhou Zhang, Hua Gao
Software Mentions: 1
Published: over 5 years ago

10.1186/s12920-015-0103-3

Integrated genomics has identified a new AT/RT-like yet INI1-positive brain tumor subtype among primary pediatric embryonal tumors
Cited by: 14
Author(s): Donald Ming Tak Ho, Chuan Chi Shih, Muh Lii Liang, Chan Yen Tsai, Tsung Han Hsieh, Chin Han Tsai, Shih Chieh Lin, Ting Chang, Meng En Chao, Hsei Wei Wang, Tai-Tong Wong
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2407-14-54

A panel of genes methylated with high frequency in colorectal cancer
Cited by: 132
Author(s): Susan M. Mitchell, Jason P. Ross, Horace R. Drew, Thu Ho, Glenn Brown, Neil F. W. Saunders, Konsta Duesing, Michael Buckley, Robert Dunne, Iain Beetson, Keith N. Rand, Aidan McEvoy, Melissa L. Thomas, Rohan T. Baker, David Wattchow, Graeme P. Young, Trevor Lockett, Susanne K. Pedersen, Lawrence C. LaPointe, Peter L. Molloy
Software Mentions: 1
Published: over 12 years ago

10.1186/s12967-019-2042-9

Metabolic profiling reveals distinct metabolic alterations in different subtypes of pituitary adenomas and confers therapeutic targets
Cited by: 8
Author(s): Jiaxuan Feng, Hua Gao, Qi Zhang, Yang Zhou, Chuzhong Li, Sida Zhao, Liu Hong, Jinjin Yang, Shuyu Hao, Hong Wan, Zhengping Zhuang, Guowang Xu, Yazhou Zhang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fonc.2019.00685

4T1 Mammary Carcinoma Colonization of Metastatic Niches Is Accelerated by Obesity
Cited by: 21
Author(s): Gabriela Coeli Menezes Evangelista, Pollyanna Amaral Salvador, Sara Malaguti Andrade Soares, Luciana Rodrigues Carvalho Barros, Felipe Henrique da Cunha Xavier, Luiza Macedo Abdo, Ana Cristina Moura Gualberto, Gilson Costa Macedo, Maria Alejandra Clavijo-Salomon, Jacy Gameiro
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0019556

Technical Variability Is Greater than Biological Variability in a Microarray Experiment but Both Are Outweighed by Changes Induced by Stimulation
Cited by: 26
Author(s): Penelope A Bryant, Gordon K. Smyth, Roy M. Robins-Browne, Nigel Curtis
Software Mentions: 1
Published: about 15 years ago

10.3390/biomedicines8080233

In-Vitro Identification and In-Vivo Confirmation of DNA Methylation Biomarkers for Urothelial Cancer
Cited by: 1
Author(s): Christof Köhler, Michael Walter, Kerstin Lang, Sabine Plöttner, Florian Roghmann, Joachim Noldus, Andrea Tannapfel, Yu Chun Tam, Heiko U. Käfferlein, Thomas Brüning
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-213X-11-20

FGF signalling through RAS/MAPK and PI3K pathways regulates cell movement and gene expression in the chicken primitive streak without affecting E-cadherin expression
Cited by: 66
Author(s): Katharine M. Hardy, Tatiana A. Yatskievych, JH Konieczka, Alexander S. Bobbs, Parker B. Antin
Software Mentions: 1
Published: over 15 years ago

10.1186/1755-8794-6-41

Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker
Cited by: 49
Author(s): Intawat Nookaew, Kaisa Thorell, Kuntal Worah, Shugui Wang, Martin L. Hibberd, Henrik Sjövall, Sven Pettersson, Jens Nielsen, Samuel Lundin
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-213X-7-48

Novel subdomains of the mouse olfactory bulb defined by molecular heterogeneity in the nascent external plexiform and glomerular layers
Cited by: 11
Author(s): Eric O. Williams, Yuanyuan Xiao, Heather M. Sickles, Paul Shafer, Golan Yona, Jean Yee Hwa Yang, David M. Lin
Software Mentions: 1
Published: over 19 years ago

10.1186/1743-422X-9-61

Systemic virus distribution and host responses in brain and intestine of chickens infected with low pathogenic or high pathogenic avian influenza virus
Cited by: 28
Author(s): J. Post, David W. Burt, J.B.W.J. Cornelissen, Venice Broks, Diana van Zoelen, Ben Peeters, Johanna M.J. Rebel
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0118226

Selection of Reference Genes for qPCR- and ddPCR-Based Analyses of Gene Expression in Senescing Barley Leaves
Cited by: 39
Author(s): Agnieszka Żmieńko, Anna Samelak-Czajka, Michał Góralski, Ewa Sobieszczuk‐Nowicka, Piotr Kozlowski, Marek Figlerowicz
Software Mentions: 1
Published: over 11 years ago

10.3390/biomedicines9030321

Characterization of Differentially Expressed Circulating miRNAs in Metabolically Healthy versus Unhealthy Obesity
Cited by: 6
Author(s): Susana Rovira‐Llopis, Rubén Díaz‐Rúa, Carmen Grau-Del Valle, Francesca Iannantuoni, Zaida Abad-Jiménez, Neus Bosch-Sierra, Joaquín Panadero-Romero, Víctor M. Víctor, Milagros Rocha, Carlos Morillas, Celia Bañuls
Software Mentions: 1
Published: over 5 years ago

10.7150/thno.43145

Renal tubular Bim mediates the tubule-podocyte crosstalk via NFAT2 to induce podocyte cytoskeletal dysfunction
Cited by: 9
Author(s): Chunmei Xu, Xiaojun Zhou, Tianyue Xie, Yuan Zhou, Qian Zhang, Shan Jiang, Rui Zhang, Lin Liao, Jianjun Dong
Software Mentions: 1
Published: over 6 years ago

10.1186/1755-8794-7-13

Childhood abuse is associated with methylation of multiple loci in adult DNA
Cited by: 147
Author(s): Matthew Suderman, Nada Borghol, Jane J. Pappas, Snehal M Pinto Pereira, Marcus Pembrey, Clyde Hertzman, Chris Power, Moshe Szyf
Software Mentions: 1
Published: over 12 years ago

10.1186/s12967-021-03006-x

Identification of proteins associated with development of psoriatic arthritis in peripheral blood mononuclear cells: a quantitative iTRAQ-based proteomics study
Cited by: 7
Author(s): Jie Zhu, Ling Han, Ruilai Liu, Zhenghua Zhang, Qiong Huang, Xu Fang, Yang Ke, Guangjian Huang, Zheng Zhang, Nikhil Yawalkar, Hui Deng, Kexiang Yan
Software Mentions: 1
Published: about 5 years ago

10.3389/fcvm.2021.690846

Downregulation of Filamin a Expression in the Aorta Is Correlated With Aortic Dissection
Cited by: 13
Author(s): Yue Chen, Xiang Wei, Zihao Zhang, Yi He, Bo Huo, Xiaorong Guo, Feng Xiao, Zemin Fang, Ding‐Sheng Jiang, Xiashi Zhu
Software Mentions: 1
Published: about 5 years ago

10.1186/1755-8794-6-42

Gene profiling suggests a common evolution of bladder cancer subtypes
Cited by: 8
Author(s): Donna E. Hansel, Zhongfa Zhang, David Petillo, Bin Tean Teh
Software Mentions: 1
Published: almost 13 years ago

10.3390/biom11020159

Transcriptome Analysis Reveals Altered Inflammatory Pathway in an Inducible Glial Cell Model of Myotonic Dystrophy Type 1
Cited by: 12
Author(s): Cuauhtli N Azotla-Vilchis, Daniel Sánchez-Celis, Luis E Agonizantes-Juárez, Rocío Suárez-Sánchez, José Manuel Hernández-Hernández, Jorge Peña, Karla Vázquez-Santillan, Norberto Leyva‐García, Arturo Ortega, Vilma Maldonado, Claudia Rangel, Jonathan J. Magaña, Bulmaro Cisneros, Óscar Hernández-Hernández
Software Mentions: 1
Published: over 5 years ago

10.3389/fcvm.2021.660372

Identification of Potential miRNA-mRNA Regulatory Network Contributing to Hypertrophic Cardiomyopathy (HCM)
Cited by: 7
Author(s): Lin Wang, Fanghong Lu, Jianguo Xu
Software Mentions: 1
Published: about 5 years ago

10.1186/s12920-020-00744-7

Long non-coding RNA profiling of pediatric Medulloblastoma
Cited by: 14
Author(s): Varun Kesherwani, Mamta Shukla, Donald W. Coulter, John Sharp, Shantaram S. Joshi, Nagendra K. Chaturvedi
Software Mentions: 1
Published: about 6 years ago

10.7150/thno.45003

Sirt6 deficiency aggravates angiotensin II-induced cholesterol accumulation and injury in podocytes
Cited by: 29
Author(s): Qian Yang, Jijia Hu, Yingjie Yang, Zhaowei Chen, Jun Feng, Zijing Zhu, Huiming Wang, Dingping Yang, Wei Liang, Guohua Ding
Software Mentions: 1
Published: over 6 years ago

10.7150/thno.44877

A novel miR-1291-ERRα-CPT1C axis modulates tumor cell proliferation, metabolism and tumorigenesis
Cited by: 29
Author(s): Yixin Chen, Yanying Zhou, Fangwei Han, Ying-Yuan Zhao, Meijuan Tu, Yong Tao Wang, Can Huang, Shicheng Fan, Panpan Chen, Xinpeng Yao, Lihuan Guan, Ai Ming Yu, Frank J. Gonzalez, Min Huang, Huichang Bi
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2021.592393

Clinical and Genetic Predictive Models for the Prediction of Pathological Complete Response to Optimize the Effectiveness for Trastuzumab Based Chemotherapy
Cited by: 1
Author(s): Lun Li, Min Chen, Shuyue Zheng, Hanlu Li, Weiru Chi, Bingqiu Xiu, Qi Zhang, Jian Hou, Wang Jia, Jiong Wu
Software Mentions: 1
Published: about 5 years ago

10.3390/biom10040661

Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method
Cited by: 53
Author(s): Marcel Bach‐Pages, Felix Homma, Jiorgos Kourelis, Farnusch Kaschani, Shabaz Mohammed, Markus Kaiser, Renier A. L. van der Hoorn, Alfredo Castelló, Gail M. Preston
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2021.700084

A New Prognostic Risk Signature of Eight Ferroptosis-Related Genes in the Clear Cell Renal Cell Carcinoma
Cited by: 8
Author(s): Ji Chen, Yating Zhan, Rongrong Zhang, Bin Chen, Junting Huang, Chunxue Li, Wenjie Zhang, Yajing Wang, Yuxiang Gao, Jianjian Zheng, Yeping Li
Software Mentions: 1
Published: about 5 years ago

10.1016/j.omtn.2018.07.018

A Transcriptome-Level Study Identifies Changing Expression Profiles for Ossification of the Ligamentum Flavum of the Spine
Cited by: 21
Author(s): Yan Han, Yuheng Hong, Liandong Li, Tengshuai Li, Zhen Zhang, Jingzhao Wang, Xia Han, Yutao Tang, Zhemin Shi, Xiaohui Han, Ting Chen, Qi Liu, Mengxia Zhang, Kun Zhang, Hong Wang, Yuan Xue
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.omtn.2019.12.029

RETRACTED: The Potential Therapeutic Role of Exosomal MicroRNA-520b Derived from Normal Fibroblasts in Pancreatic Cancer
Cited by: 16
Author(s): Huijuan Shi, Hui Li, Tiantian Zhen, Yu Dong, Xiaojuan Pei, Xiangliang Zhang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-021-08166-z

Bioinformatics analysis of mRNA and miRNA microarray to identify the key miRNA-mRNA pairs in cisplatin-resistant ovarian cancer
Cited by: 3
Author(s): Xue Bai, Shupeng Li, Xiance Jin, Lifeng Liu
Software Mentions: 1
Published: over 5 years ago

10.3390/genes7120124

microRNA Expression in Sentinel Nodes from Progressing Melanoma Patients Identifies Networks Associated with Dysfunctional Immune Response
Cited by: 8
Author(s): Viviana Vallacchi, Chiara Camisaschi, Matteo Dugo, Elisabetta Vergani, Paola Deho, Ambra Vittoria Gualeni, Veronica Huber, Annunziata Gloghini, Andrea Maurichi, Mario Santinami, Marialuisa Sensi, Chiara Castelli, Licia Rivoltini, Monica Rodolfo
Software Mentions: 1
Published: over 9 years ago

10.3390/genes8010044

Tissue Non-Specific Genes and Pathways Associated with Diabetes: An Expression Meta-Analysis
Cited by: 9
Author(s): Hao Mei, Lianna Li, Shijian Liu, Fan Jiang, Michael Griswold, Thomas H. Mosley
Software Mentions: 1
Published: over 9 years ago

10.3390/genes8030086

Systematic Identification and Assessment of Therapeutic Targets for Breast Cancer Based on Genome-Wide RNA Interference Transcriptomes
Cited by: 9
Author(s): Yang Liu, Xiaoyao Yin, Jing Zhong, Naiyang Guan, Zhigang Luo, Min Lü, Xing Yao, Xiaochen Bo, Licheng Dai, Hui Bai
Software Mentions: 1
Published: over 9 years ago

10.3390/genes9070350

Ensemble Consensus-Guided Unsupervised Feature Selection to Identify Huntington’s Disease-Associated Genes
Cited by: 6
Author(s): Xia Guo, Xue Jiang, Jing Xu, Xiongwen Quan, Min Wu, Han Zhang
Software Mentions: 1
Published: about 8 years ago

10.3390/genes9080380

A Herpes Simplex Virus Thymidine Kinase-Induced Mouse Model of Hepatocellular Carcinoma Associated with Up-Regulated Immune-Inflammatory-Related Signals
Cited by: 4
Author(s): Zhijuan Gong, Qiang Ma, Xujun Wang, Qing Cai, Xiaohua Gong, Georgi Z. Genchev, Hui Lu, Fanyi Zeng
Software Mentions: 1
Published: about 8 years ago

10.1186/s12885-020-07100-z

Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer
Cited by: 6
Author(s): Maryam Soleimani Dodaran, Simone Borgoni, Emre Sofyalı, Pernette J. Verschure, Stefan Wiemann, Perry D. Moerland, Antoine H. C. van Kampen
Software Mentions: 1
Published: about 6 years ago

10.3390/genes9120588

Systems Analysis of Transcriptomic and Proteomic Profiles Identifies Novel Regulation of Fibrotic Programs by miRNAs in Pulmonary Fibrosis Fibroblasts
Cited by: 24
Author(s): Steven Mullenbrock, Fei Liu, Suzanne Szak, Xiaoping Hronowski, Benbo Gao, Péter Juhász, Chao Sun, Mei Liu, Helen McLaughlin, Qingqing Xiao, Carol Feghali‐Bostwick, Timothy S. Zheng
Software Mentions: 1
Published: over 7 years ago

10.3390/genes10010045

Network Analyses of Integrated Differentially Expressed Genes in Papillary Thyroid Carcinoma to Identify Characteristic Genes
Cited by: 9
Author(s): Junliang Shang, Dali Qian, Shasha Yuan, Jin-Xing Liu, Feng Li, Honghai Zhang
Software Mentions: 1
Published: over 7 years ago

10.7150/thno.47239

circPTCH1 promotes invasion and metastasis in renal cell carcinoma via regulating miR-485-5p/MMP14 axis
Cited by: 49
Author(s): Huan Liu, Guanghui Hu, Zaoyu Wang, Qunlong Liu, Jin Zhang, Yonghui Chen, Yiran Huang, Wei Xue, Yunfei Xu, Wei Zhai
Software Mentions: 1
Published: over 6 years ago

10.7150/thno.48264

Circular RNA circPPM1F modulates M1 macrophage activation and pancreatic islet inflammation in type 1 diabetes mellitus
Cited by: 92
Author(s): Caiyan Zhang, Xiao Han, Lan Yang, Jinrong Fu, Chengjun Sun, Saihua Huang, Wenfeng Xiao, Yajing Gao, Qiuyan Liang, Xiang Wang, Feihong Luo, Wei Lü, Yufeng Zhou
Software Mentions: 1
Published: over 6 years ago

10.1186/s12920-021-00918-x

Integrated analysis of lncRNA–miRNA–mRNA ceRNA network and the potential prognosis indicators in sarcomas
Cited by: 15
Author(s): Lu Gao, Yu Zhao, Xuelei Ma, Ling Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2020.00259

Exosome-Derived miR-486-5p Regulates Cell Cycle, Proliferation and Metastasis in Lung Adenocarcinoma via Targeting NEK2
Cited by: 27
Author(s): Huihui Hu, Hui Xu, Fen Lu, Jisong Zhang, Li Xu, Shan Xu, Hanliang Jiang, Qingxin Zeng, Enguo Chen, Zhengfu He
Software Mentions: 1
Published: over 6 years ago

10.3390/genes10120962

Computational Inference of Gene Co-Expression Networks for the identification of Lung Carcinoma Biomarkers: An Ensemble Approach
Cited by: 4
Author(s): Fernando M. Delgado-Chaves, Francisco Gómez-Vela, Miguel García-Torres, José Luis Vázquez Noguera
Software Mentions: 1
Published: over 6 years ago

10.3389/fbioe.2020.00276

Dysregulation of Signaling Pathways Due to Differentially Expressed Genes From the B-Cell Transcriptomes of Systemic Lupus Erythematosus Patients – A Bioinformatics Approach
Cited by: 51
Author(s): Sanjit Kumar, Dhirendra Kumar, Ramamoorthy Siva, George Priya Doss C, Salma Younes, Nadin Younes, Mariem Sidenna, Hatem Zayed
Software Mentions: 1
Published: over 6 years ago

10.1186/s12920-020-00795-w

Identification of key genes and functions of circulating tumor cells in multiple cancers through bioinformatic analysis
Cited by: 8
Author(s): Yawen Guan, Fangshi Xu, Yiyuan Wang, Jie Tian, Ziyan Wan, Zhenlong Wang, Tie Chong
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0039126

Transcriptional Responses of Resistant and Susceptible Fish Clones to the Bacterial Pathogen Flavobacterium psychrophilum
Cited by: 51
Author(s): Christelle Langevin, M. Mar Blanco, Samuel Martín, Luc Jouneau, Jean‐François Bernardet, Armel Houel, Aurélie Lunazzi, Éric Duchaud, Christian Michel, Edwige Quillet, Pierre Boudinot
Software Mentions: 1
Published: about 14 years ago

10.3389/fbioe.2020.01003

The Study of Sarcoma Microenvironment Heterogeneity Associated With Prognosis Based on an Immunogenomic Landscape Analysis
Cited by: 14
Author(s): Jin Deng, Weiming Zeng, Wei Kong, Yuhu Shi, Xiaoyang Mou
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12885-021-07959-6

Integrative genomic expression analysis reveals stable differences between lung cancer and systemic sclerosis
Cited by: 0
Author(s): Heng Li, Liping Ding, Xiaoping Hong, Yulan Chen, Rui Liao, Tingting Wang, Shuhui Meng, Zhuhua Jiang, Dongzhou Liu
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms17050665

Characterization of Micro-RNA Changes during the Progression of Type 2 Diabetes in Zucker Diabetic Fatty Rats
Cited by: 47
Author(s): Denis Delić, Claudia Eisele, RM Schmid, Gerd Luippold, Eric Mayoux, Rolf Grempler
Software Mentions: 1
Published: over 10 years ago

10.1186/s12885-020-06869-3

SCDb: an integrated database of stomach cancer
Cited by: 7
Author(s): Erli Gu, Wei Song, Ajing Liu, Wang Hong
Software Mentions: 1
Published: about 6 years ago

10.1186/1755-8794-5-46

Defining the genomic signature of the parous breast
Cited by: 63
Author(s): Suraj Peri, Ricardo López de Cicco, Julia Santucci-Pereira, Michael Slifker, Eric A. Ross, Irma H. Russo, Patrícia A. Russo, Alan A. Arslan, Ilana Belitskaya-Lévy, Anne Zeleniuch‐Jacquotte, Pál Bordás, Per Lenner, Janet Åhman, Yelena Afanasyeva, Robert Johansson, Fathima Sheriff, Göran Hallmans, Paolo Toniolo, José Russo
Software Mentions: 1
Published: almost 14 years ago

10.3390/genes11080908

A Four-Methylated lncRNAs-Based Prognostic Signature for Hepatocellular Carcinoma
Cited by: 9
Author(s): Leen Liao, Dandan Hu, Yun Zheng
Software Mentions: 1
Published: about 6 years ago

10.7150/thno.48739

Hypermethylation of GNA14 and its tumor-suppressive role in hepatitis B virus-related hepatocellular carcinoma
Cited by: 16
Author(s): Guangyuan Song, Xiaomei Zhu, Zefeng Xuan, Long Zhao, Haijiang Dong, Jian Chen, Zequn Li, Wenfeng Song, Cheng Jin, Mingmei Zhou, Haiyang Xie, Shusen Zheng, Penghong Song
Software Mentions: 1
Published: over 5 years ago

10.3390/biom9020037

Integrative Analyses of Genes Associated with Subcutaneous Insulin Resistance
Cited by: 13
Author(s): Manoj Kumar Pujar, Basavaraj Vastrad, Chanabasayya Vastrad
Software Mentions: 1
Published: over 7 years ago

10.3390/biom10081120

Aberrant Membrane Composition and Biophysical Properties Impair Erythrocyte Morphology and Functionality in Elliptocytosis
Cited by: 8
Author(s): Hélène Pollet, Anne‐Sophie Cloos, Amaury Stommen, Juliette Vanderroost, Louise Conrard, Adrien Paquot, Marine Ghodsi, Mélanie Carquin, Catherine Léonard, Manuel Guthmann, Maxime Lingurski, Christiane Vermylen, Theodore Killian, Laurent Gatto, Mark H. Rider, Sébastien Pyr dit Ruys, Didier Vertommen, Miikka Vikkula, Pascal Brouillard, Patrick Van Der Smissen, Giulio G. Muccioli, Donatienne Tyteca
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0045899

Development, Characterization and Experimental Validation of a Cultivated Sunflower (Helianthus annuus L.) Gene Expression Oligonucleotide Microarray
Cited by: 28
Author(s): Paula Fernández, Marcelo Soria, David Blesa, Julio Dirienzo, Sebastián Moschen, Máximo Rivarola, Bernardo Clavijo, Sergio González, Lucila Peluffo, Dario Príncipi, Guillermo A. A. Dosio, Luis Aguirrezábal, Francisco García‐García, Ana Conesa, H. Esteban Hopp, Joaquı́n Dopazo, Ruth Amelia Heinz, Norma Paniego
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12885-020-07598-3

Identification and validation of a six-gene signature associated with glycolysis to predict the prognosis of patients with cervical cancer
Cited by: 14
Author(s): Luya Cai, Chuan Hu, Shanshan Yu, Lixiao Liu, Xiaobo Yu, Jiahua Chen, Xuan Li, Fan Lin, Cheng Zhang, Wenfeng Li, Xiaojian Yan
Software Mentions: 1
Published: over 5 years ago

10.7150/thno.45157

Genome-wide study of salivary miRNAs identifies miR-423-5p as promising diagnostic and prognostic biomarker in oral squamous cell carcinoma
Cited by: 31
Author(s): Chiara Romani, Elisa Salviato, Alberto Paderno, Laura Zanotti, Antonella Ravaggi, Alberto Deganello, Giulia Berretti, Tommaso Gualtieri, Sergio Marchini, Maurizio D’Incalci, Davide Mattavelli, Cesare Piazza, Paolo Bossi, Chiara Romualdi, Piero Nicolai, Eliana Bignotti
Software Mentions: 1
Published: over 5 years ago

10.3390/nu11020232

β-Cryptoxanthin Reduces Body Fat and Increases Oxidative Stress Response in Caenorhabditis elegans Model
Cited by: 18
Author(s): Silvia Llopis, María Jesús Rodrigo, Núria González, Salvador Genovés, Lorenzo Zacarı́as, Daniel Ramón, Patricia Martorell
Software Mentions: 1
Published: over 7 years ago

10.3390/genes11101193

Campylobacter jejuni Cas9 Modulates the Transcriptome in Caco-2 Intestinal Epithelial Cells
Cited by: 9
Author(s): Chinmoy Saha, Deborah Horst-Kreft, Inez Kross, Peter J. van der Spek, Rogier Louwen, Peter van Baarlen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12967-020-02367-z

High methylation of lysine acetyltransferase 6B is associated with the Cobb angle in patients with congenital scoliosis
Cited by: 9
Author(s): Yuantao Wu, Hongqi Zhang, Mingxing Tang, Chaofeng Guo, Ang Deng, Jiong Li, Yunjia Wang, Lairong Xiao, Guanteng Yang
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-213X-12-4

Fine scale analysis of gene expression in Drosophila melanogaster gonads reveals Programmed cell death 4 promotes the differentiation of female germline stem cells
Cited by: 16
Author(s): Amy Cash, Justen Andrews
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0033284

Genome-Wide DNA Methylation Indicates Silencing of Tumor Suppressor Genes in Uterine Leiomyoma
Cited by: 102
Author(s): Antònia Navarro, Ping Yin, Diana Monsivais, Simon Lin, Pan Du, Jian Jun Wei, Serdar E. Bulun
Software Mentions: 1
Published: over 14 years ago

10.3390/biom10010113

The Ovarian Transcriptome of Reproductively Aged Multiparous Mice: Candidate Genes for Ovarian Cancer Protection
Cited by: 3
Author(s): Ulises Urzúa, Carlos Chacón, Maximiliano Norambuena, Luis Lizama, Sebastián Sarmiento, Esther Asaki, John Powell, Sandra Ampuero
Software Mentions: 1
Published: over 6 years ago

10.3389/fnagi.2020.589588

Network Pharmacology-Based and Experimental Identification of the Effects of Quercetin on Alzheimer’s Disease
Cited by: 22
Author(s): Pingfang Qi, Jing Li, Shichao Gao, Yirong Yuan, Yindi Sun, Na Liu, Yuanyuan Li, Gang Wang, Ling Chen, Jing Shi
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnagi.2021.639428

A Meta-Analysis of Brain DNA Methylation Across Sex, Age, and Alzheimer's Disease Points for Accelerated Epigenetic Aging in Neurodegeneration
Cited by: 34
Author(s): Camilla Pellegrini, Chiara Pirazzini, Claudia Sala, Luisa Sambati, Igor Yusipov, Alena Kalyakulina, Francesco Ravaioli, Katarzyna Malgorzata Kwiatkowska, Danielle Fernandes Durso, Mikhail Ivanchenko, Daniela Monti, Raffaele Lodi, Claudio Franceschi, Pietro Cortelli, Paolo Garagnani, Maria Giulia Bacalini
Software Mentions: 1
Published: over 5 years ago

10.3389/fnagi.2021.665935

Integrative Analysis of lncRNA and mRNA and Profiles in Postoperative Delirium Patients
Cited by: 5
Author(s): Yuxiang Song, Xiaoyan Wang, Aisheng Hou, Hao Li, Jingsheng Lou, Yanhong Liu, Jiangbei Cao, Weidong Mi
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12020307

Epigenetic Regulation of Processes Related to High Level of Fibroblast Growth Factor 21 in Obese Subjects
Cited by: 7
Author(s): Teresa Płatek, Anna Polus, Joanna Góralska, Urszula Raźny, Agnieszka Dziewońska, Agnieszka Micek, A. Dembińska-Kieć, Bogdan Solnica, Małgorzata Malczewska-Malec
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0215870

Relief from nitrogen starvation entails quick unexpected down-regulation of glycolytic/lipid metabolism genes in enological Saccharomyces cerevisiae
Cited by: 0
Author(s): Catherine Tesnière, Chloé Bessière, Martine Pradal, Isabelle Sanchez, Bruno Blondin, Frédéric Bigey
Software Mentions: 1
Published: over 7 years ago

10.3389/fnagi.2021.632448

Circular RNA circDUS2 Is a Potential Biomarker for Intracranial Aneurysm
Cited by: 6
Author(s): Xin Chen, Shuzhe Yang, Junhua Yang, Qingyuan Li, Maogui Li, Jun Wu, Hao Wang, Shuo Wang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms17040568

Prognostic Value of MicroRNAs in Preoperative Treated Rectal Cancer
Cited by: 16
Author(s): Azadeh Azizian, Ingo Epping, Frank Krämer, Peter Jo, Markus Bernhardt, Julia Kitz, Gabriela Salinas, Hendrik A. Wolff, Marian Grade, Tim Beißbarth, B. Michael Ghadimi, Jochen Gaedcke
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0035119

Seasonal Changes in Patterns of Gene Expression in Avian Song Control Brain Regions
Cited by: 42
Author(s): Christopher K. Thompson, John Meitzen, Kirstin Replogle, Jenny Drnevich, Karin Lent, Anne Marie Wissman, Federico M. Farin, Theo K. Bammler, Richard P. Beyer, David F. Clayton, David J. Perkel, Eliot A. Brenowitz
Software Mentions: 1
Published: over 14 years ago

10.1002/fsn3.388

A nutritional supplement containing lactoferrin stimulates the immune system, extends lifespan, and reduces amyloidβpeptide toxicity inCaenorhabditis elegans
Cited by: 28
Author(s): Patricia Martorell, Silvia Llopis, Núria González, Daniel Ramón, Gabriel Serrano, Ana Torrens, Juan Monte Serrano, María del Mar Téllez Navarro, Salvador Genovés
Software Mentions: 1
Published: about 10 years ago

10.1186/1755-8794-4-86

Early peroxisome proliferator-activated receptor gamma regulated genes involved in expansion of pancreatic beta cell mass
Cited by: 16
Author(s): Yurena Vivas, Cristina Martínez‐García, Alberto Galindo Izquierdo, Francisco García‐García, Sergio Callejas, Ismael Velasco, Mark Campbell, Manuel Ros, Ana Dopazo, Joaquín Dopazo, António Vidal-Puig, Gema Medina-Gómez
Software Mentions: 1
Published: over 14 years ago

10.3892/mmr.2014.2756

Neuronal calcium signaling pathways are associated with the development of epilepsy
Cited by: 14
Author(s): Fanjuan Meng, Yu You, Zhiliang Liu, Jianming Liu, Hu Ding, Ran Xu
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12920-015-0100-6

Blood-based identification of non-responders to anti-TNF therapy in rheumatoid arthritis
Cited by: 26
Author(s): Timothy M. Thomson, Reynald Lescarbeau, David A. Drubin, Daphna Laifenfeld, David de Graaf, David A. Fryburg, Bruce H. Littman, Renée Deehan, A. Van Hooser
Software Mentions: 1
Published: about 11 years ago

10.1002/2211-5463.12805

Identifying the key genes and microRNAs in prostate cancer bone metastasis by bioinformatics analysis
Cited by: 33
Author(s): Zhiguo Zhu, Yuan Wen, Chunxiang Xuan, Qingping Chen, Qian Xiang, Jiamin Wang, Yangzhou Liu, Lianmin Luo, Shankun Zhao, Yihan Deng, Zhigang Zhao
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms160816816

Differential DNA Methylation in Relation to Age and Health Risks of Obesity
Cited by: 36
Author(s): María L. Mansego, Fermı́n I. Milagro, M. Ángeles Zulet, María J. Moreno-Aliaga, J. Alfredo Martínéz
Software Mentions: 1
Published: about 11 years ago

10.1002/2211-5463.13270

ZIPK activates the IL‐6/STAT3 signaling pathway and promotes cisplatin resistance in gastric cancer cells
Cited by: 4
Author(s): Haonan Fan, Qifeng Ou, Shan Qiao, Guanman Li, Zhijuan Deng, Xiaohui Huang, Jiong Bi
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12967-018-1577-5

Identification of an early diagnostic biomarker of lung adenocarcinoma based on co-expression similarity and construction of a diagnostic model
Cited by: 7
Author(s): Zhirui Fan, Wenhua Xue, Lifeng Li, Chaoqi Zhang, Jingli Lü, Yunkai Zhai, Zhenhe Suo, Jie Zhao
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pcbi.1003572

Contribution of Network Connectivity in Determining the Relationship between Gene Expression and Metabolite Concentration Changes
Cited by: 62
Author(s): Aleksej Zelezniak, Steven D. Sheridan, Kiran Raosaheb Patil
Software Mentions: 1
Published: over 12 years ago

10.1007/s12263-014-0390-x

Vitamin C supplementation modulates gene expression in peripheral blood mononuclear cells specifically upon an inflammatory stimulus: a pilot study in healthy subjects
Cited by: 32
Author(s): Raffaella Canali, Lucia Natarelli, Guido Leoni, Elena Azzini, Raffaella Comitato, Oezgur Sancak, Luca Barella, Fabio Virgili
Software Mentions: 1
Published: over 12 years ago

10.1186/s12906-019-2577-6

Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks
Cited by: 18
Author(s): Meizhen Zhu, Meng Li, Wenjun Zhou, Yang Yang, Fenghua Li, Li Zhang, Guang Ji
Software Mentions: 1
Published: about 7 years ago

10.1186/s12263-019-0644-8

Effect of gestational oily fish intake on the risk of allergy in children may be influenced by FADS1/2, ELOVL5 expression and DNA methylation
Cited by: 13
Author(s): Purevsuren Losol, Faisal I. Rezwan, Veeresh Patil, Carina Venter, Susan Ewart, Hongmei Zhang, Syed Hasan Arshad, Wilfried Karmaus, John W. Holloway
Software Mentions: 1
Published: about 7 years ago

10.1002/2211-5463.12907

Alterations in DNA methylation profiles in cancellous bone of postmenopausal women with osteoporosis
Cited by: 14
Author(s): Zhe Yu, Ling Yang, Wang Hong, Xi Chen, Wei Jiang, Zhicong Wang, Shuping Liu, Yuehong Liu
Software Mentions: 1
Published: about 6 years ago

10.1002/2211-5463.12514

Rab32‐related antimicrobial pathway is involved in the progression of dextran sodium sulfate‐induced colitis
Cited by: 3
Author(s): Xiaodong Xie, Qingshan Ni, Daxue Zhou, Ying Wan
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12920-021-00885-3

A novel prognostic prediction model based on seven immune-related RNAs for predicting overall survival of patients in early cervical squamous cell carcinoma
Cited by: 7
Author(s): Rui Qin, Lu Cao, Cong Ye, Junrong Wang, Ziqian Sun
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms12117554

Enhanced Differentiation of Three-Gene-Reprogrammed Induced Pluripotent Stem Cells into Adipocytes via Adenoviral-Mediated PGC-1α Overexpression
Cited by: 9
Author(s): Pin I. Huang, Yueh Ching Chou, Yuh Lih Chang, Yueh Chien, Kuan Hsuan Chen, Wen Song, Chi Hsien Peng, Chueh Chang, Shin-Da Lee, Kai Lü, Yi Jen Chen, Chia‐Hua Kuo, Chuan Chih Hsu, Hsin Chen Lee, Ming Chi Yung
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12885-021-08293-7

A circular RNAs dataset landscape reveals potential signatures for the detection and prognosis of early-stage lung adenocarcinoma
Cited by: 5
Author(s): Zhiying Chen, Jiahui Wei, Min Li, Yufei Zhao
Software Mentions: 1
Published: about 5 years ago

10.1002/2211-5463.12428

Gene expression profiles and pathway enrichment analysis of human osteosarcoma cells exposed to sorafenib
Cited by: 9
Author(s): Zhehao Dai, Haoyu Tang, Yue Pan, Junquan Chen, Yongping Li, Zhu Jun
Software Mentions: 1
Published: over 8 years ago

10.1186/s12881-019-0829-4

Assessment of risk based on variant pathways and establishment of an artificial neural network model of thyroid cancer
Cited by: 6
Author(s): Yupei Zhao, Lingzhi Zhao, Tiezhu Mao, Lili Zhong
Software Mentions: 1
Published: about 7 years ago

10.1002/2211-5463.13111

Analysis of the role of Frizzled 2 in different cancer types
Cited by: 2
Author(s): Miaomiao Zhou, Xuezhu Sun, Yongwei Zhu
Software Mentions: 1
Published: over 5 years ago

10.1016/j.gdata.2016.01.016

Microarray analysis of kiwifruit ( Actinidia chinensis ) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae)
Cited by: 0
Author(s): M. G. Hill, Kirstin Wurms, Marcus Davy, Elaine M. Gould, Andrew C. Allan, N. A. Mauchline, Zhiwei Luo, A. Ah Chee, Kate Stannard, Roy Storey, Erik H. A. Rikkerink
Software Mentions: 1
Published: over 10 years ago

10.1186/s12885-020-07590-x

Expression and prognostic analyses of the insulin-like growth factor 2 mRNA binding protein family in human pancreatic cancer
Cited by: 9
Author(s): Xiaoping Chen, Shu-Yi Hu, Chen Zhu, Xihu Qin
Software Mentions: 1
Published: over 5 years ago

10.3892/mmr.2014.2137

Module-based functional pathway enrichment analysis of a protein-protein interaction network to study the effects of intestinal microbiota depletion in mice
Cited by: 6
Author(s): Zhiying Jia, Yang Xia, Danian Tong, Jing Yao, Hongqi Chen, Jun Yang
Software Mentions: 1
Published: over 12 years ago

Projects: bioconductor: limma

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Papers Mentioning limma 7,776