10.1186/s13229-015-0061-9

Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures
Cited by: 18
Author(s): Daria Prilutsky, Alvin T. Kho, Nathan Palmer, Asha L. Bhakar, Niklas Smedemark-Margulies, Sek Won Kong, David M. Margulies, Mark F. Bear, Isaac S. Kohane
Software Mentions: 1
Published: almost 11 years ago

10.1186/s40478-019-0823-2

A post-translational modification signature defines changes in soluble tau correlating with oligomerization in early stage Alzheimer’s disease brain
Cited by: 47
Author(s): Ebru Ercan-Herbst, J Ehrig, David C. Schöndorf, Annika Behrendt, Bernd Klaus, Borja Gomez Ramos, Nuria Prat Oriol, Christian Weber, Dagmar E. Ehrnhoefer
Software Mentions: 1
Published: almost 7 years ago

10.3390/microorganisms8101541

The Proteome of Community Living Candida albicans Is Differentially Modulated by the Morphologic and Structural Features of the Bacterial Cohabitants
Cited by: 1
Author(s): Tin Truong, Li Mei Pang, Suhasini Rajan, Sarah Sze Wah Wong, YS Fung, LP Samaranayake, Chaminda Jayampath Seneviratne
Software Mentions: 1
Published: about 6 years ago

10.1038/s41398-020-01127-3

Differential and spatial expression meta-analysis of genes identified in genome-wide association studies of depression
Cited by: 18
Author(s): Wennie Wu, Derek Howard, Etienne Sibille, Leon French
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41398-020-01139-z

A genome-wide methylation study reveals X chromosome and childhood trauma methylation alterations associated with borderline personality disorder
Cited by: 6
Author(s): Maria Arranz, Cristina Gallego-Fábrega, Ana Martín-Blanco, Joaquim Soler, Matilde Elices, Elisabet Domínguez-Clavé, Juliana Salazar, Daniel Vega, Laia Briones-Buixassa, Juan Carlos Pascual
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41398-020-01171-z

Dopamine regulates pancreatic glucagon and insulin secretion via adrenergic and dopaminergic receptors
Cited by: 39
Author(s): Despoina Aslanoglou, Suzanne Bertera, Marta Sánchez-Soto, R. Benjamin Free, Jeongkyung Lee, Wei Zong, Xiangning Xue, Shristi Shrestha, Marcela Briššová, Ryan W. Logan, Claes B. Wollheim, Massimo Trucco, Vijay Yechoor, David R. Sibley, Rita Bottino, Zachary Freyberg
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-018-2059-8

Heuristic algorithms for feature selection under Bayesian models with block-diagonal covariance structure
Cited by: 9
Author(s): Ali Foroughi pour, Lori A. Dalton
Software Mentions: 1
Published: over 8 years ago

10.3390/nu11020232

β-Cryptoxanthin Reduces Body Fat and Increases Oxidative Stress Response in Caenorhabditis elegans Model
Cited by: 18
Author(s): Silvia Llopis, María Jesús Rodrigo, Núria González, Salvador Genovés, Lorenzo Zacarı́as, Daniel Ramón, Patricia Martorell
Software Mentions: 1
Published: over 7 years ago

10.1038/s41398-021-01367-x

White matter deficits in cocaine use disorder: convergent evidence from in vivo diffusion tensor imaging and ex vivo proteomic analysis
Cited by: 9
Author(s): Lucca Pizzato Tondo, Thiago Wendt Viola, Gabriel R. Fries, Bruno Kluwe-Schiavon, Leonardo Mello Rothmann, Renata B. Cupertino, Pedro Eugênio Ferreira, Alexandre R. Franco, Scott D. Lane, Laura Stertz, Zhongming Zhao, Ruifeng Hu, Thomas D. Meyer, Joy M. Schmitz, Consuelo Walss‐Bass, Rodrigo Grassi‐Oliveira
Software Mentions: 1
Published: over 5 years ago

10.1186/s13075-017-1382-1

Genome-wide DNA methylation profile analysis identifies differentially methylated loci associated with ankylosis spondylitis
Cited by: 31
Author(s): Jiangcan Hao, Lu Yang, Jiawen Xu, Wenyu Wang, Yan Wen, Awen He, Qunping Fan, Xiong Guo, Feng Zhang
Software Mentions: 1
Published: about 9 years ago

10.3390/microorganisms5010012

Transcriptomic Complexity of Aspergillus terreus Velvet Gene Family under the Influence of Butyrolactone I
Cited by: 20
Author(s): Elina K. Palonen, Sheetal Raina, Annika Brandt, Jussi Meriluoto, Tajalli Keshavarz, Jari Soini
Software Mentions: 1
Published: over 9 years ago

10.1038/s41398-021-01635-w

Exploration of alcohol use disorder-associated brain miRNA–mRNA regulatory networks
Cited by: 20
Author(s): Yolpanhchana Lim, Jennifer E. Beane, Yoshiaki Tanaka, Boting Ning, Christopher Husted, David C. Henderson, Yangfei Xiang, In‐Hyun Park, Lindsay A. Farrer, Huiping Zhang
Software Mentions: 1
Published: about 5 years ago

10.1093/treephys/tpw017

Adaptive mechanisms and genomic plasticity for drought tolerance identified in European black poplar (<i>Populus nigra</i>L.)
Cited by: 48
Author(s): Maud Viger, Helen K. Smith, David Cohen, J. Andrew DeWoody, Harriet Trewin, Marijke Steenackers, Catherine Bastien, Gail Taylor
Software Mentions: 1
Published: over 10 years ago

10.1016/j.tube.2020.102033

Host transcriptional response to TB preventive therapy differentiates two sub-groups of IGRA-positive individuals
Cited by: 11
Author(s): Claire Broderick, Jacqueline M. Cliff, Ji-Sook Lee, Myrsini Kaforou, David Moore
Software Mentions: 1
Published: over 5 years ago

10.1186/ar3695

Tight regulation of wingless-type signaling in the articular cartilage - subchondral bone biomechanical unit: transcriptomics in Frzb-knockout mice
Cited by: 39
Author(s): Liesbet Lodewyckx, F. Cailotto, Sarah Thysen, Frank P. Luyten, Rik Lories
Software Mentions: 1
Published: almost 15 years ago

10.4274/tjh.galenos.2020.2020.0144

LEF1 Induces DHRS2 Gene Expression in Human Acute Leukemia Jurkat T-Cells
Cited by: 1
Author(s): Sema Sırma Ekmekçi, Zeliha Emrence, Neslihan Abacı, Melda Sarıman, Burcu Salman, Cumhur Gökhan Ekmekçi, Çağrı Güleç
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms9030667

Molecular Physiological Characterization of a High Heat Resistant Spore Forming Bacillus subtilis Food Isolate
Cited by: 10
Author(s): Zhiwei Tu, Peter Setlow, Stanley Brul, Gertjan Kramer
Software Mentions: 1
Published: over 5 years ago

10.1186/s40168-021-01050-9

The pregnane X receptor drives sexually dimorphic hepatic changes in lipid and xenobiotic metabolism in response to gut microbiota in mice
Cited by: 11
Author(s): Sharon Ann Barretto, Frédèric Lasserre, Marine Huillet, Marion Régnier, Arnaud Polizzi, Yannick Lippi, Anne Fougerat, Elodie Person, Sandrine Bruel, Colette Bétoulières, Claire Naylies, Céline Lukowicz, Sarra Smati, Laurence Guzylack, Maı̈wenn Olier, Vassilia Théodorou, Laïla Mselli-Lakhal, Daniel Zalko, Walter Wahli, Nicolas Loiseau, Laurence Gamet-Payrastre, Hervé Guillou, Sandrine Ellero‐Simatos
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.27844

Differential gene expression in cisplatin-resistant and -sensitive testicular germ cell tumor cell lines
Cited by: 6
Author(s): Jan Roška, Lenka Wachsmannová, Lenka Hurbanová, Zuzana Šestáková, Thomas Mueller, Dana Jurkovičová, Miroslav Chovanec
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40168-021-01128-4

Distinct B cell subsets in Peyer’s patches convey probiotic effects by Limosilactobacillus reuteri
Cited by: 17
Author(s): Haoyu Liu, Antoine Giraud, Cédric Seignez, David Ahl, Fan Guo, John Sedin, Tomas B. Waldén, Jee-Hwan Oh, Jan Peter van Pijkeren, Lena Holm, Stefan Roos, Stefan Bertilsson, Mia Phillipson
Software Mentions: 1
Published: about 5 years ago

10.1099/mic.0.055863-0

Vru (Sub0144) controls expression of proven and putative virulence determinants and alters the ability of Streptococcus uberis to cause disease in dairy cattle
Cited by: 13
Author(s): Sharon A. Egan, Philip N. Ward, Michael Watson, Terence R. Field, James A. Leigh
Software Mentions: 1
Published: over 14 years ago

10.1128/mBio.00342-18

Interleukin-1β Signaling in Dendritic Cells Induces Antiviral Interferon Responses
Cited by: 46
Author(s): Lauren Aarreberg, Courtney Wilkins, Hilario J. Ramos, Richard Green, Michael A. Davis, Kwan T. Chow, Michael Gale
Software Mentions: 1
Published: over 8 years ago

10.1002/mbo3.1107

Role of the microbiota in ileitis of a mouse model of inflammatory bowel disease—Glutathione peroxide isoenzymes 1 and 2‐double knockout mice on a C57BL background
Cited by: 2
Author(s): Fong‐Fong Chu, R. Steven Esworthy, Binghui Shen, James H. Doroshow
Software Mentions: 1
Published: about 6 years ago

10.1186/1475-2859-9-60

New method for selection of hydrogen peroxide adapted bifidobacteria cells using continuous culture and immobilized cell technology
Cited by: 21
Author(s): Valeria Mozzetti, Franck Grattepanche, D Moine, Bernard Berger, Enea Rezzonico, Léo Meile, Fabrizio Arigoni, Christophe Lacroix
Software Mentions: 1
Published: about 16 years ago

10.1128/mBio.02778-19

Ubiquitination of <i>Listeria</i> Virulence Factor InlC Contributes to the Host Response to Infection
Cited by: 9
Author(s): Edith Gouin, Damien Balestrino, Orhan Rasid, Marie–Anne Nahori, Véronique Villiers, Francis Impens, Stevenn Volant, Thomas Vogl, Yves Jacob, Olivier Dussurget, Pascale Cossart
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.02512-19

Comparative Genomics for the Elucidation of Multidrug Resistance in Candida lusitaniae
Cited by: 31
Author(s): Abhilash Kannan, Sandra Asner, Emilie Trachsel, Steven L. Kelly, Josie E. Parker, Dominique Sanglard
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12934-015-0381-7

Systems analysis of methylerythritol-phosphate pathway flux in E. coli: insights into the role of oxidative stress and the validity of lycopene as an isoprenoid reporter metabolite
Cited by: 23
Author(s): Mareike Bongers, Panagiotis K. Chrysanthopoulos, James B. Y. H. Behrendorff, Mark P. Hodson, Claudia E. Vickers, Lars K. Nielsen
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12934-017-0730-9

Biomarkers allow detection of nutrient limitations and respective supplementation for elimination in Pichia pastoris fed-batch cultures
Cited by: 17
Author(s): Jonas Burgard, Minoska Valli, Alexandra B. Graf, Brigitte Gasser, Diethard Mattanovich
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.00948-20

A Chemical Counterpunch: Chromobacterium violaceum ATCC 31532 Produces Violacein in Response to Translation-Inhibiting Antibiotics
Cited by: 19
Author(s): Gabriel L. Lozano, Changhui Guan, Yanzhuan Cao, Bradley R. Borlee, Nichole A. Broderick, Eric V. Stabb, Jo Handelsman
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.01911-20

Genotoxic Effect of <i>Salmonella</i> Paratyphi A Infection on Human Primary Gallbladder Cells
Cited by: 14
Author(s): Ludovico P Sepe, Kimberly Hartl, Amina Iftekhar, Hilmar Berger, Naveen Kumar, Christian Goosmann, Sascha Chopra, Sven Schmidt, Rajendra Kumar Gurumurthy, Thomas F. Meyer, Francesco Boccellato
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.03374-20

A Novel Trichomonas vaginalis Surface Protein Modulates Parasite Attachment via Protein:Host Cell Proteoglycan Interaction
Cited by: 6
Author(s): Brenda M. Molgora, Anand Kumar, Michael J. Sweredoski, Annie Moradian, Sonja Hess, Patricia J. Johnson
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.103245

Identification and validation of hub microRNAs dysregulated in esophageal squamous cell carcinoma
Cited by: 16
Author(s): Chen Sang, Ce Chao, Wang Min, Youpu Zhang, Guanghua Luo, Xiaoying Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12934-016-0496-5

Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea
Cited by: 22
Author(s): Katarina Karničar, Igor Drobnak, Marko Petek, Vasilka Magdevska, Jaka Horvat, Robert Vidmar, Špela Baebler, Ana Rotter, Polona Jamnik, Štefan Fujs, Boris Turk, Marko Fonović, Kristina Gruden, Gregor Kosec, Hrvoje Petković
Software Mentions: 1
Published: over 10 years ago

10.1128/mBio.01572-21

Unfolded Protein Response Inhibition Reduces Middle East Respiratory Syndrome Coronavirus-Induced Acute Lung Injury
Cited by: 14
Author(s): Amy C. Sims, Hugh D. Mitchell, Lisa E. Gralinski, Jennifer Kyle, Kristin Burnum-Johnson, Mariam Lam, M. Leslie Fulcher, Ande West, Richard Smith, Scott H. Randell, Thomas O. Metz, Timothy P. Sheahan, Katrina M. Waters, Ralph S. Baric
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.01247-21

Plasmodium vivax Infection Alters Mitochondrial Metabolism in Human Monocytes
Cited by: 2
Author(s): Suelen Queiroz Diniz, Andréa Teixeira-Carvalho, María Marta Figueiredo, Pedro Augusto Carvalho Costa, Bruno Coelho Rocha, Olindo Assis Martins‐Filho, Ashley Goncalves, Dhélio Batista Pereira, Mauro Shugiro Tada, Fabiano Oliveira, Ricardo T. Gazzinelli, Lis Ribeiro do Valle Antonelli
Software Mentions: 1
Published: about 5 years ago

10.1128/mSphere.00119-16

Transcriptomic Analysis of the Activity of a Novel Polymyxin against Staphylococcus aureus
Cited by: 13
Author(s): Jinxin Zhao, Soon-Ee Cheah, Kade D. Roberts, Roger L. Nation, Phillip E. Thompson, Tony Velkov, Zong‐Jun Du, Matthew D. Johnson, Jian Li
Software Mentions: 1
Published: about 10 years ago

10.1186/1475-2859-10-104

The impact of phosphate scarcity on pharmaceutical protein production in S. cerevisiae: linking transcriptomic insights to phenotypic responses
Cited by: 7
Author(s): Ali Kazemi Seresht, Eva Palmqvist, Lisbeth Olsson
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12934-014-0120-5

Pichia pastoris Aft1 - a novel transcription factor, enhancing recombinant protein secretion
Cited by: 30
Author(s): Claudia Ruth, Markus Buchetics, Viktorija Vidimce, Daniela Kotz, Stefan Naschberger, Diethard Mattanovich, Harald Pichler, Brigitte Gasser
Software Mentions: 1
Published: about 12 years ago

10.15698/mic2014.11.173

Overexpression of the transcription factor Yap1 modifies intracellular redox conditions and enhances recombinant protein secretion
Cited by: 24
Author(s): Marizela Delic, Alexandra B. Graf, Gunda Koellensperger, Christina Troyer, Stephan Hann, Diethard Mattanovich, Brigitte Gasser
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13075-019-2082-9

Integrated systems analysis of salivary gland transcriptomics reveals key molecular networks in Sjögren’s syndrome
Cited by: 9
Author(s): Hong Ki Min, Su‐Jin Moon, Kyung-Su Park, Ki-Jo Kim
Software Mentions: 1
Published: almost 7 years ago

10.1007/s00204-020-02808-0

Perfluorooctanoic acid (PFOA), perfluorooctane sulfonic acid (PFOS), and perfluorononanoic acid (PFNA) increase triglyceride levels and decrease cholesterogenic gene expression in human HepaRG liver cells
Cited by: 43
Author(s): Jochem Louisse, Deborah Rijkers, Geert Stoopen, Aafke W. F. Janssen, Martijn Staats, L.A.P. Hoogenboom, Sander Kersten, Ad Peijnenburg
Software Mentions: 1
Published: over 6 years ago

10.1111/1751-7915.12109

Transcriptomic analysis of <scp> <i>S</i> </scp> <i>treptomyces clavuligerus</i> Δ <scp> <i>ccaR</i> </scp> <i>::</i> <scp> <i>tsr</i> </scp> : effects of the cephamycin <scp>C</scp> ‐clavulanic acid cluster regulator <scp>CcaR</scp> on global regulation
Cited by: 22
Author(s): Rubén Álvarez-Álvarez, Antonio Rodríguez‐García, Irene Santamarta, Rosario Pérez‐Redondo, A. Prieto‐Domínguez, Yolanda Martínez-Burgo, Paloma Liras
Software Mentions: 1
Published: over 12 years ago

10.1007/s00204-016-1723-x

Model-based contextualization of in vitro toxicity data quantitatively predicts in vivo drug response in patients
Cited by: 16
Author(s): Christoph Thiel, Henrik Cordes, Isabel Conde, José V. Castell, Lars M. Blank, Lars Kuepfer
Software Mentions: 1
Published: over 10 years ago

10.1002/cam4.2433

The establishment of immune infiltration based novel recurrence predicting nomogram in prostate cancer
Cited by: 35
Author(s): Jialin Meng, Yi Liu, Shi-Yang Guan, Song Fan, Jun Zhou, Meng Zhang, Chaozhao Liang
Software Mentions: 1
Published: about 7 years ago

10.1007/s00204-020-02697-3

Calretinin is a novel candidate marker for adverse ovarian effects of early life exposure to mixtures of endocrine disruptors in the rat
Cited by: 6
Author(s): Hanna Katarina Lilith Johansson, Terje Svingen, Julie Boberg, Paul A. Fowler, David Stead, Anne Marie Vinggaard, Panagiotis Filis
Software Mentions: 1
Published: over 6 years ago

10.1177/1073274819831260

Identification of Potential Key Genes and Pathways in Early-Onset Colorectal Cancer Through Bioinformatics Analysis
Cited by: 39
Author(s): Bin Zhao, Zulqarnain Baloch, Yunhan Ma, Weiping Zheng, Yani Huo, Fujun Li, Yilin Zhao
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12935-021-01821-2

Identification the ferroptosis-related gene signature in patients with esophageal adenocarcinoma
Cited by: 58
Author(s): Lei Zhu, Fugui Yang, Lingwei Wang, Dong Lin, Zhiyuan Huang, Guangxue Wang, Guohan Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-020-01651-8

Hsa_circ_0004831 serves as a blood-based prognostic biomarker for colorectal cancer and its potentially circRNA-miRNA-mRNA regulatory network construction
Cited by: 13
Author(s): Linlin Xing, Mengyan Xia, Xin Jiao, Ling Fan
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-020-01302-y

Serum-derived three-circRNA signature as a diagnostic biomarker for hepatocellular carcinoma
Cited by: 44
Author(s): Xianghong Sun, Yu-Tong Wang, Guofu Li, Nan Zhang, Ling Fan
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-020-01725-7

miR-636 inhibits EMT, cell proliferation and cell cycle of ovarian cancer by directly targeting transcription factor Gli2 involved in Hedgehog pathway
Cited by: 11
Author(s): Jiong Ma, Chunxia Zhou, Xuejun Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/1479-7364-8-10

Novel age-dependent targets in vestibular schwannomas
Cited by: 4
Author(s): Amos Toren, Juergen K.V. Reichardt, Ali Andalibi, Nancy Hsu, Joni K. Doherty, William H. Slattery, Ruty Mehrian‐Shai
Software Mentions: 1
Published: over 12 years ago

10.1186/s12935-020-01566-4

Glioma exosomal microRNA-148a-3p promotes tumor angiogenesis through activating the EGFR/MAPK signaling pathway via inhibiting ERRFI1
Cited by: 24
Author(s): Meng Wang, Yi Zhao, Zhiyun Yu, Ren-De Zhang, Shuang Li, Peng Zhang, Ti-Kun Shan, Xueyou Liu, Zeming Wang, Peichao Zhao, Hongwei Sun
Software Mentions: 1
Published: almost 6 years ago

10.1186/1479-7364-7-2

Gene selection and cancer type classification of diffuse large-B-cell lymphoma using a bivariate mixture model for two-species data
Cited by: 9
Author(s): Yongxuan Su, Dahlia M. Nielsen, Lei Zhu, Kristy L. Richards, Steven E. Suter, Matthew Breen, Alison A. Motsinger‐Reif, Jason A. Osborne
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12935-020-01633-w

Integrative in silico and in vitro transcriptomics analysis revealed new lncRNAs related to intrinsic apoptotic genes in colorectal cancer
Cited by: 9
Author(s): Fatemeh Akbari, Maryam Peymani, Ali Salehzadeh, Kamran Ghaedi
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-020-01645-6

Extracellular vesicle-associated miR-135b and -135a regulate stemness in Group 4 medulloblastoma cells by targeting angiomotin-like 2
Cited by: 7
Author(s): Seung Ah Choi, Eun Jung Koh, Ryong Nam Kim, Jung Woo Byun, Ji Hoon Phi, Jeyul Yang, Kyu Chang Wang, Ae Kyung Park, Do Won Hwang, Ji Yeoun Lee, Seung Ki Kim
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00204-018-2239-3

Prenatal arsenic exposure is associated with increased plasma IGFBP3 concentrations in 9-year-old children partly via changes in DNA methylation
Cited by: 29
Author(s): Anda R. Gliga, Karin Engström, Maria Kippler, Helena Skröder, Sultan Ahmed, Marie Vahter, Rubhana Raqib, Karin Broberg
Software Mentions: 1
Published: over 8 years ago

10.1186/s12935-021-02018-3

Long non-coding RNA NEAT1 facilitates the growth, migration, and invasion of ovarian cancer cells via the let-7 g/MEST/ATGL axis
Cited by: 10
Author(s): Lili Yin, Yu Wang
Software Mentions: 1
Published: about 5 years ago

10.1161/HYPERTENSIONAHA.121.17396

Influence of Maternal Lifestyle and Diet on Perinatal DNA Methylation Signatures Associated With Childhood Arterial Stiffness at 8 to 9 Years
Cited by: 9
Author(s): Robert Murray, Negusse Tadesse Kitaba, Elie Antoun, Philip Titcombe, Sheila J. Barton, Cyrus Cooper, Hazel Inskip, Graham C. Burdge, Pamela Mahon, John Deanfield, Julian Halcox, Elizabeth A Ellins, Jennifer Bryant, Charles Peebles, Karen A. Lillycrop, Keith M. Godfrey, Mark A. Hanson
Software Mentions: 1
Published: about 5 years ago

10.1007/s00204-014-1279-6

From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effects
Cited by: 70
Author(s): Nina V. Balmer, Stefanie Klima, Eugen Rempel, Violeta N. Ivanova, Raivo Kolde, Matthias K. Weng, Kesavan Meganathan, Margit Henry, Agapios Sachinidis, Michael R. Berthold, Jan G. Hengstler, Jörg Rahnenführer, Tanja Waldmann, Marcel Leist
Software Mentions: 1
Published: over 12 years ago

10.1186/s12935-021-01908-w

BRD4 PROTAC degrader ARV-825 inhibits T-cell acute lymphoblastic leukemia by targeting 'Undruggable' Myc-pathway genes
Cited by: 29
Author(s): Shuiyan Wu, Yongxin Jiang, Yushin Hong, Xinran Chu, Zimu Zhang, Yan-Fang Tao, Ziwei Fan, Zhidong Bai, Xiaolu Li, Yanling Chen, Zhiheng Li, Xin Ding, Haitao Lv, Xiaohong Du, Su Lin Lim, Yongping Zhang, Saihu Huang, Jun Lü, Jian Pan, Shaoyan Hu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-020-01267-y

Identification and validation of an individualized autophagy-clinical prognostic index in gastric cancer patients
Cited by: 34
Author(s): Jieping Qiu, Mengyu Sun, Yaoqun Wang, Bo Chen
Software Mentions: 1
Published: over 6 years ago

10.7150/ijbs.57338

MiR-17-5p and MKL-1 modulate stem cell characteristics of gastric cancer cells
Cited by: 6
Author(s): Zhou-Tong Dai, Xiang Yuan, Yuanyuan Duan, Jun Wang, Jia Peng Li, Huimin Zhang, Chao Cheng, Qiong Wang, Tongcun Zhang, Xing–Hua Liao
Software Mentions: 1
Published: almost 6 years ago

10.7150/ijbs.59019

NEK2 plays an active role in Tumorigenesis and Tumor Microenvironment in Non-Small Cell Lung Cancer
Cited by: 10
Author(s): Rui Bai, Cheng Yuan, Wenjie Sun, Jianguo Zhang, Yuan Luo, Yanping Gao, Yangyi Li, Yan Gong, Conghua Xie
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13018-020-01735-1

Bioinformatic analysis and experimental identification of blood biomarkers for chronic nonunion
Cited by: 8
Author(s): Jingwei Wu, Limin Liu, Huaijian Hu, Zhihua Gao, Shibao Lu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-020-01414-5

Comprehensive analysis of the expression of sodium/potassium-ATPase α subunits and prognosis of ovarian serous cystadenocarcinoma
Cited by: 8
Author(s): Wei Huang, Yongjian Zhang, Ye Xu, Shaoyou Yang, Bing Li, Lan Huang, Ge Lou
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-021-02068-7

New insight into long non-coding RNAs associated with bone metastasis of breast cancer based on an integrated analysis
Cited by: 15
Author(s): Yu Zhang, Xiaofeng Huang, Jin Liu, Guo Chen, Chengjun Liu, Sen Zhang, Jiaxin Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s13018-020-01756-w

Identification of a potential gene target for osteoarthritis based on bioinformatics analyses
Cited by: 5
Author(s): Zhixi Duan, Yusheng Li, Chao Tu, Peng Xie, Yi-Han Li, Lin Qi, Zhihong Li
Software Mentions: 1
Published: over 6 years ago

10.7150/ijbs.54074

KIF11 promotes cell proliferation via ERBB2/PI3K/AKT signaling pathway in gallbladder cancer
Cited by: 21
Author(s): Wei Dang, Rui Bian, Fan Qingquan, Chen Cai, Hu Ping, Song Xiaoling, Hao Wu, Gu J
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-020-01484-5

Long noncoding RNA LINC00261 suppresses prostate cancer tumorigenesis through upregulation of GATA6-mediated DKK3
Cited by: 16
Author(s): Yang Li, Hai Li, Xin Wei
Software Mentions: 1
Published: about 6 years ago

10.1186/1756-9966-31-68

Molecular markers associated with outcome and metastasis in human pancreatic cancer
Cited by: 63
Author(s): Ann Van den Broeck, Hugo Vankelecom, Rudy van Eijsden, Olivier Govaere, Baki Topal
Software Mentions: 1
Published: about 14 years ago

10.1186/s13046-016-0283-5

The leukemogenic fusion gene MLL-AF9 alters microRNA expression pattern and inhibits monoblastic differentiation via miR-511 repression
Cited by: 12
Author(s): Katrin K. Fleischmann, Philipp Pagel, Julia von Frowein, Thomas Magg, Adelbert A. Roscher, Irene Schmid
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13046-017-0614-1

circGFRA1 and GFRA1 act as ceRNAs in triple negative breast cancer by regulating miR-34a
Cited by: 261
Author(s): Rongfang He, Peng Liu, Xiaoming Xie, Yujuan Zhou, Qianjin Liao, Wei Xiong, Xiaoling Li, Guiyuan Li, Zhaoyang Zeng
Software Mentions: 1
Published: about 9 years ago

10.1186/s13046-018-0838-8

circFBLIM1 act as a ceRNA to promote hepatocellular cancer progression by sponging miR-346
Cited by: 119
Author(s): Ning Bai, Eming Peng, Xingsheng Qiu, Ning Lyu, Zhejia Zhang, Yiming Tao, Xinying Li, Zhiming Wang
Software Mentions: 1
Published: about 8 years ago

10.1186/s13046-018-0953-6

EBV-miR-BART8-3p induces epithelial-mesenchymal transition and promotes metastasis of nasopharyngeal carcinoma cells through activating NF-κB and Erk1/2 pathways
Cited by: 62
Author(s): Cheng Lin, Jingfeng Zong, Wei Lin, Minghui Wang, Yujin Xu, Rui Zhou, Lin Shen, Qiaojuan Guo, Honglin Chen, Yunbin Ye, Bin Zhang, Jianji Pan
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12935-021-02062-z

Circular RNA-DPP4 serves an oncogenic role in prostate cancer progression through regulating miR-195/cyclin D1 axis
Cited by: 4
Author(s): Dian Yang, Bo Yang, Yinghong Zhu, Qianlin Xia, Yan Zhang, Xin Zhu, Jianming Guo, Tao Ding, Jianghua Zheng
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-020-01212-z

Bioinformatics combined with quantitative proteomics analyses and identification of potential biomarkers in cholangiocarcinoma
Cited by: 9
Author(s): Zijian Da, Long Gao, Gang Su, Jia Yao, Wenkang Fu, Jinduo Zhang, Xu Zhang, Zhaoji Pei, Ping Yue, Bing Bai, Yanyan Lin, Wenbo Meng, Xun Li
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-019-0886-y

Protective potential of miR-146a-5p and its underlying molecular mechanism in diverse cancers: a comprehensive meta-analysis and bioinformatics analysis
Cited by: 13
Author(s): Meiwei Li, Gao Li, Yi‐Wu Dang, Ping Li, Zu‐Yun Li, Dan Luo
Software Mentions: 1
Published: over 7 years ago

10.1186/s12935-020-01210-1

Silencing of microRNA-135b inhibits invasion, migration, and stemness of CD24+CD44+ pancreatic cancer stem cells through JADE-1-dependent AKT/mTOR pathway
Cited by: 19
Author(s): Jingyang Zhou, Haihong Wang, Jinhui Che, Xu Lu, Wei Yang, Yunjiu Li, Wuyuan Zhou
Software Mentions: 1
Published: over 6 years ago

10.1186/s13046-019-1313-x

Macrophage-derived exosomal microRNA-501-3p promotes progression of pancreatic ductal adenocarcinoma through the TGFBR3-mediated TGF-β signaling pathway
Cited by: 187
Author(s): Zi Yin, Tingting Ma, Bowen Huang, Lehang Lin, Yu Zhou, Jinhai Yan, Yiping Zou, Sheng Chen
Software Mentions: 1
Published: over 7 years ago

10.1186/s12935-019-0742-0

ZEB1-AS1 initiates a miRNA-mediated ceRNA network to facilitate gastric cancer progression
Cited by: 25
Author(s): Ming Ma, Jia-Xiang An, Cheng Zhang, Jie Liu, Liang Yu, Zhen Zhang, Dong‐Qiu Dai
Software Mentions: 1
Published: over 7 years ago

10.1186/s13046-019-1491-6

miR-624-5p promoted tumorigenesis and metastasis by suppressing hippo signaling through targeting PTPRB in osteosarcoma cells
Cited by: 34
Author(s): Yi Luo, Wei Liu, Pengyu Tang, Dongdong Jiang, Changjiang Gu, Yu‐Min Huang, Fangyi Gong, Yuluo Rong, Dingfei Qian, Jian Chen, Zheng Zhou, Shujie Zhao, Jiaxing Wang, Tan Xu, Yongzhong Wei, Guoyong Yin, Jin Fan, Wei Cai
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13046-019-1507-2

Exosome-mediated transfer of miR-93-5p from cancer-associated fibroblasts confer radioresistance in colorectal cancer cells by downregulating FOXA1 and upregulating TGFB3
Cited by: 79
Author(s): Xijuan Chen, Junqi Liu, Qinglan Zhang, Baoxing Liu, Yan Cheng, Yonglei Zhang, Yanan Sun, Hong Ge, Yingqiang Liu
Software Mentions: 1
Published: over 6 years ago

10.1007/s00204-020-02779-2

Hepatotoxic pyrrolizidine alkaloids induce DNA damage response in rat liver in a 28-day feeding study
Cited by: 24
Author(s): Johanna Ebmeyer, Josef Daniel Rasinger, Jan G. Hengstler, Dirk Schaudien, Otto Creutzenberg, Alfonso Lampen, Albert Braeuning, Stefanie Hessel‐Pras
Software Mentions: 1
Published: over 6 years ago

10.1186/s13046-020-01631-w

Human umbilical cord mesenchymal stem cells-derived exosomes deliver microRNA-375 to downregulate ENAH and thus retard esophageal squamous cell carcinoma progression
Cited by: 59
Author(s): Zhao He, Weihao Li, Tianliang Zheng, Donglei Liu, Song Zhao
Software Mentions: 1
Published: about 6 years ago

10.1186/s13018-019-1538-6

Knockdown of miR-660 protects nucleus pulposus cells from TNF-a-induced apoptosis by targeting serum amyloid A1
Cited by: 10
Author(s): Hao Jie Zhang, Xue Hai, Song Lin Xie, Shu Qin, Cong Zhi Liu, Zhen Guo Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12935-020-01515-1

Identification of potential biomarkers and candidate small molecule drugs in glioblastoma
Cited by: 12
Author(s): Wei-Cheng Lu, Hui Xie, Ce Yuan, Jinjiang Li, Zhaoyang Li, Andrew Wu
Software Mentions: 1
Published: about 6 years ago

10.1186/s13046-020-01750-4

Loss of PLK2 induces acquired resistance to temozolomide in GBM via activation of notch signaling
Cited by: 17
Author(s): Alafate Wahafu, Dongze Xu, Wei Wu, Jianyang Xiang, Xudong Ma, Wei Xie, Xia Bai, Maode Wang, Jia Wang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13018-017-0674-0

A time-course microarray data analysis reveals consistent dysregulated genes and upstream microRNAs in autoantibody-mediated arthritis
Cited by: 1
Author(s): Xinwen Wang, Jie Bai, Zhen Jia, Yangjun Zhu, Jijun Liu, Kun Zhang, Dingjun Hao, Heng Li
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13046-020-01819-0

Lnc-GAN1 expression is associated with good survival and suppresses tumor progression by sponging mir-26a-5p to activate PTEN signaling in non-small cell lung cancer
Cited by: 14
Author(s): Ruiqi Wang, Xueying Long, Ningning Zhou, Dongni Chen, Mei‐Yin Zhang, Zhesheng Wen, Lanjun Zhang, Fazhong He, Zongqing Zhou, Shi-Juan Mai, Huiyun Wang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-019-1064-y

Silencing of microRNA-517a induces oxidative stress injury in melanoma cells via inactivation of the JNK signaling pathway by upregulating CDKN1C
Cited by: 12
Author(s): Chia-Han Yang, Zeqiang Yan, Fang Hu, Wei Wei, Zhenchang Sun, Wei Xu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-020-01415-4

Linc00473 potentiates cholangiocarcinoma progression by modulation of DDX5 expression via miR-506 regulation
Cited by: 8
Author(s): Liyi Huang, Xingming Jiang, Zhenglong Li, Jinglin Li, Xuan Lin, Zengtao Hu, Yunfu Cui
Software Mentions: 1
Published: about 6 years ago

10.1186/s13046-021-01928-4

Novel LncRNA OXCT1-AS1 indicates poor prognosis and contributes to tumorigenesis by regulating miR-195/CDC25A axis in glioblastoma
Cited by: 18
Author(s): Zhong Chen, Qian Yu, Yucong Peng, Shanshan Zhou, Zhendong Liu, Yong Deng, Leiguang Guo, Shen Zhao, Gao Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-020-01714-w

PlGF knockdown attenuates hypoxia-induced stimulation of cell proliferation and glycolysis of lung adenocarcinoma through inhibiting Wnt/β-catenin pathway
Cited by: 2
Author(s): Wei Zhang, Yanwei Zhang, Wenzhong Zhou, Fangfei Qian, Maoliang Hu, Chen Ya, Jun Lü, Yu‐Qing Lou, Baohui Han
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13046-021-02027-0

Circular RNA circ_001422 promotes the progression and metastasis of osteosarcoma via the miR-195-5p/FGF2/PI3K/Akt axis
Cited by: 49
Author(s): Bo Yang, Lutao Li, Tong Ge, Zhirui Zeng, Jianye Tan, Zexin Su, Zhengwei Liu, Jiezhao Lin, Wenwen Gao, Jianping Chen, Sisi Zeng, Guofeng Wu, Lin Li, Shuang Zhu, Qiuzhen Liu, Lin Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-020-01322-8

LncRNA ZFAS1 promotes pancreatic adenocarcinoma metastasis via the RHOA/ROCK2 pathway by sponging miR-3924
Cited by: 22
Author(s): Jinyang Liu, Yaqin Zhu, Chunlin Ge
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-020-01686-x

Inhibition of cancer cell-derived exosomal microRNA-183 suppresses cell growth and metastasis in prostate cancer by upregulating TPM1
Cited by: 17
Author(s): Dai Yanping, Gao Xiaoqin
Software Mentions: 1
Published: over 5 years ago

10.1186/s13018-021-02390-w

Identification of key genes and pathways of BMP-9-induced osteogenic differentiation of mesenchymal stem cells by integrated bioinformatics analysis
Cited by: 12
Author(s): Jiaqi Wu, Lin-Bo Mao, Lingfeng Liu, Yongmei Li, Jian Wu, Jiao Yao, Fenghuan Zhang, Tingyu Liu, Ling Yuan
Software Mentions: 1
Published: over 5 years ago

10.1084/jem.20181778

TCF-1 limits the formation of Tc17 cells via repression of the MAF–RORγt axis
Cited by: 43
Author(s): Lisa A. Mielke, Yang Liao, E. Bridie Clemens, Matthew A. Firth, Brigette C. Duckworth, Qiutong Huang, Francisca F. Almeida, Michaël Chopin, Hui-Fern Koay, Carolyn A. Bell, Soroor Hediyeh-Zadeh, Simone L. Park, Dinesh Raghu, Jarny Choi, Tracy L. Putoczki, Philip D. Hodgkin, Ashley E. Franks, Laura K. Mackay, Dale I. Godfrey, Melissa J. Davis, Hai-Hui Xue, Vanessa L. Bryant, Katherine Kedzierska, Wei Shi, Gabrielle T. Belz
Software Mentions: 1
Published: over 7 years ago

10.1186/s12935-021-02175-5

The cholesterol esterification inhibitor avasimibe suppresses tumour proliferation and metastasis via the E2F-1 signalling pathway in prostate cancer
Cited by: 3
Author(s): Kang-Ping Xiong, Gang Wang, Tianchen Peng, Fenfang Zhou, Siming Chen, Wei Liu, Lingao Ju, Yu Xiao, Kaiyu Qian, Xinghuan Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12935-019-0780-7

Stimulative role of ST6GALNAC1 in proliferation, migration and invasion of ovarian cancer stem cells via the Akt signaling pathway
Cited by: 19
Author(s): Wenyan Wang, Yunxia Cao, Xiao Zhou, Bing Wei, Lei Zhan, Shiying Sun
Software Mentions: 1
Published: over 7 years ago