Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: limma

https://packages.ecosyste.ms/registries/bioconductor.org/packages/limma

Linear Models for Microarray Data
3 versions
Latest release: about 1 year ago
314 dependent packages
4,663,292 downloads total

Papers Mentioning limma 7,776

10.3389/fphys.2020.00621
Regulatory T Cells as a Novel Candidate for Cell-Based Therapy in Kidney Disease
Cited by: 2
Author(s): Junyu Lu, Jianfeng Zhang, Menghua Chen, Chun Chen, Zhengzhao Li, Liao Pinhu
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms21124315
Artificial Sporulation Induction (ASI) by kinA Overexpression Affects the Proteomes and Properties of Bacillus subtilis Spores
Cited by: 5
Author(s): Zhiwei Tu, Wishwas Abhyankar, Bhagyashree N. Swarge, Nicole N. van der Wel, Gertjan Kramer, Stanley Brul, Leo J. de Koning
Software Mentions: 1
Published: over 4 years ago
10.3389/fphys.2019.00619
Comparative Expression Profiling of Wild Type Drosophila Malpighian Tubules and von Hippel-Lindau Haploinsufficient Mutant
Cited by: 2
Author(s): Marilena Ignesti, Davide Andrenacci, Bettina Fischer, Valeria Cavaliere, Giuseppe Gargiulo
Software Mentions: 1
Published: over 5 years ago
10.3389/fpls.2015.00682
Analysis of global gene expression profile of rice in response to methylglyoxal indicates its possible role as a stress signal molecule
Cited by: 50
Author(s): Charanpreet Kaur, Hemant R. Kushwaha, Ananda Mustafiz, Ashwani Pareek, Sudhir K. Sopory, Sneh L. Singla‐Pareek
Software Mentions: 1
Published: about 9 years ago
10.3389/fpls.2015.01198
From Accumulation to Degradation: Reprogramming Polyamine Metabolism Facilitates Dark-Induced Senescence in Barley Leaf Cells
Cited by: 27
Author(s): Ewa Sobieszczuk‐Nowicka, Szymon Kubala, Agnieszka Żmieńko, Arleta Małecka, Jolanta Legocka
Software Mentions: 1
Published: almost 9 years ago
10.1186/s40348-020-00099-0
DNA methylation biomarkers of future health outcomes in children
Cited by: 7
Author(s): Shivanthan Shanthikumar, Melanie R Neeland, Jovana Maksimovic, Sarath Ranganathan, Richard Saffery
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2164-11-82
Transcriptional changes in response to X chromosome dosage in the mouse: implications for X inactivation and the molecular basis of Turner Syndrome
Cited by: 55
Author(s): Alexandra M. Lopes, Paul S. Burgoyne, Andrew Ojarikre, Julien Bauer, Carole A. Sargent, António Amorim, Nabeel A. Affara
Software Mentions: 1
Published: almost 15 years ago
10.1016/j.molcel.2021.04.018
Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase
Cited by: 31
Author(s): Ka-Yiu Edwin Kong, Bernd Fischer, Matthias Meurer, Ilia Kats, Zhao-Yan Li, Frank Rühle, Joseph D. Barry, Daniel Kirrmaier, Veronika Chevyreva, Bryan-Joseph San Luis, Michael Costanzo, Wolfgang Huber, Brenda Andrews, Charles Boone, Michael Knop, Anton Khmelinskii
Software Mentions: 1
Published: over 3 years ago
10.1016/j.molcel.2017.08.003
The RNA m 6 A Reader YTHDF2 Is Essential for the Post-transcriptional Regulation of the Maternal Transcriptome and Oocyte Competence
Cited by: 263
Author(s): Ivayla Ivanova, Christian Much, Monica Di Giacomo, Chiara Azzi, Marcos Morgan, Pedro Ventura De Oliveira Moreira, Jack Monahan, Claudia Carrieri, Anton J. Enright, Dónal O’Carroll
Software Mentions: 1
Published: about 7 years ago
10.1016/j.molcel.2019.03.040
METTL1 Promotes let-7 MicroRNA Processing via m7G Methylation
Cited by: 261
Author(s): Luca Pandolfini, Isaia Barbieri, Andrew J. Bannister, Alan G. Hendrick, Byron Andrews, Natalie A. Webster, Pierre Murat, Pia Mach, Rossella Brandi, Samuel Robson, Valentina Migliori, Andrej Alendar, Mara D’Onofrio, Shankar Balasubramanian, Tony Kouzarides
Software Mentions: 1
Published: over 5 years ago
10.1016/j.molcel.2018.11.013
Noncanonical Modulation of the eIF2 Pathway Controls an Increase in Local Translation during Neural Wiring
Cited by: 64
Author(s): Roberta Cagnetta, Hovy Ho-Wai Wong, Christian K. Frese, Giovanna R. Mallucci, Jeroen Krijgsveld, Christine E. Holt
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms21144913
A Possible Role for Arylsulfatase G in Dermatan Sulfate Metabolism
Cited by: 2
Author(s): Aleksandra Poterała-Hejmo, Adam Gołda, Marcin Pacholczyk, Sebastian Student, Anna Tylki‐Szymańska, Anna Lalik
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2016.01793
Insights into the Role of the Berry-Specific Ethylene Responsive Factor VviERF045
Cited by: 27
Author(s): Carmen Leida, A. Dal Rì, Lorenza Dalla Costa, María Dolores Gómez, Valerio Pompili, Paolo Sonego, Kristof Engelen, Domenico Masuero, Gabino Ríos, C. Moser
Software Mentions: 1
Published: almost 8 years ago
10.3389/fpls.2016.00180
Transcriptomic Analysis of Soil-Grown Arabidopsis thaliana Roots and Shoots in Response to a Drought Stress
Cited by: 78
Author(s): Sultana Rasheed, Khurram Bashir, Atsushi Matsui, Maho Tanaka, Motoaki Seki
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2017.02192
Salicylic Acid Perturbs sRNA-Gibberellin Regulatory Network in Immune Response of Potato to Potato virus Y Infection
Cited by: 39
Author(s): Maja Križnik, Marko Petek, David Dobnik, Živa Ramšak, Špela Baebler, Stephan Pollmann, Jan Kreuze, Jana Žel, Kristina Gruden
Software Mentions: 1
Published: almost 7 years ago
10.3389/fpls.2017.01158
Chloroplast Redox Status Modulates Genome-Wide Plant Responses during the Non-host Interaction of Tobacco with the Hemibiotrophic Bacterium Xanthomonas campestris pv. vesicatoria
Cited by: 17
Author(s): Juan José Pierella Karlusich, Matías D. Zurbriggen, Fahimeh Shahinnia, Sophia Sonnewald, Uwe Sonnewald, Seyed Abdollah Hosseini, Mohammad‐Reza Hajirezaei, Néstor Carrillo
Software Mentions: 1
Published: over 7 years ago
10.1186/1476-4598-14-1
Melanoma cells influence the differentiation pattern of human epidermal keratinocytes
Cited by: 81
Author(s): Ondřej Kodet, Lukáš Lacina, Eliška Krejčí, Bařbora Dvořánková, Miloš Grim, Jiří Štork, Daniela Kodetová, Čestmı́r Vlček, Jana Šáchová, Michal Kolář, Hynek Strnad, Karel Smetana
Software Mentions: 1
Published: almost 10 years ago
10.3389/fpls.2013.00403
Arabidopsis TNL-WRKY domain receptor RRS1 contributes to temperature-conditioned RPS4 auto-immunity
Cited by: 40
Author(s): Katharina Heidrich, Kazuhiko Tsuda, Servane Blanvillain-Baufumé, Lennart Wirthmueller, Jaqueline Bautor, Jane E. Parker
Software Mentions: 1
Published: almost 12 years ago
10.3390/ijms21155333
The Expression of Cold-Inducible RNA-Binding Protein mRNA in Sow Genital Tract Is Modulated by Natural Mating, But Not by Seminal Plasma
Cited by: 6
Author(s): Jaume Gardela, Mateo Ruiz-Conca, Cristina A. Martínez, Dominic Wright, Manel López‐Béjar, H. Rodrı́guez-Martı́nez, Manuel Álvarez‐Rodríguez
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2017.00437
Comparative Analysis of Expression Profiles of Panicle Development among Tolerant and Sensitive Rice in Response to Drought Stress
Cited by: 17
Author(s): Haibin Wei, Chen Chen, Xiaoyan Ma, Yu Zhang, Jing Han, Hanwei Mei, Shunwu Yu
Software Mentions: 1
Published: over 7 years ago
10.3389/fpls.2021.644408
Galactolipid and Phospholipid Profile and Proteome Alterations in Soybean Leaves at the Onset of Salt Stress
Cited by: 10
Author(s): Ailin Liu, Zhixia Xiao, Zhili Wang, Hon‐Ming Lam, Mee-Len Chye
Software Mentions: 1
Published: over 3 years ago
10.1186/1476-4598-13-151
Identification of a gene signature of a pre-transformation process by senescence evasion in normal human epidermal keratinocytes
Cited by: 12
Author(s): Nathalie Martin, Clara Salazar-Cardozo, Chantal Vercamer, Louise Ott, Guillemette Marot, Predrag Slijepčević, Corinne Abbadie, Olivier Pluquet
Software Mentions: 1
Published: over 10 years ago
10.1186/s12943-018-0849-2
Knockdown of long non-coding RNA NEAT1 inhibits glioma cell migration and invasion via modulation of SOX2 targeted by miR-132
Cited by: 157
Author(s): Ke Zhou, Chi Zhang, Hui Yao, Xuewen Zhang, Youxin Zhou, Yanjun Che, Yulun Huang
Software Mentions: 1
Published: over 6 years ago
10.1186/s12943-018-0911-0
EIF4A3-induced circular RNA MMP9 (circMMP9) acts as a sponge of miR-124 and promotes glioblastoma multiforme cell tumorigenesis
Cited by: 227
Author(s): Renjie Wang, Sai Zhang, Xuyi Chen, Nan Li, Jianwei Li, Ruichao Jia, Yuanqing Pan, Haiqian Liang
Software Mentions: 1
Published: about 6 years ago
10.1186/1476-4598-13-216
Small nucleolar RNA 113–1 suppresses tumorigenesis in hepatocellular carcinoma
Cited by: 82
Author(s): Gang Xu, Fang Yang, Chen Ding, Lan‐Juan Zhao, Hao Ren, Ping Zhao, Wen Wang, Zhongtian Qi
Software Mentions: 1
Published: about 10 years ago
10.1186/1476-4598-9-283
Elimination of head and neck cancer initiating cells through targeting glucose regulated protein78 signaling
Cited by: 98
Author(s): Meng-Ju Wu, Chia Ing Jan, Yeou Guang Tsay, Yau Hua Yu, Chih Yang Huang, Shu Chun Lin, Chung Ji Liu, Yu Syuan Chen, Jeng‐Fan Lo, Cheng Chia Yu
Software Mentions: 1
Published: about 14 years ago
10.3389/fpls.2016.00853
Oligouridylate Binding Protein 1b Plays an Integral Role in Plant Heat Stress Tolerance
Cited by: 35
Author(s): Cam Chau Nguyen, Kentaro Nakaminami, Atsushi Matsui, Shuhei Kobayashi, Y. Kurihara, Kiminori Toyooka, Maho Tanaka, Motoaki Seki
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2017.01530
BLISTER Regulates Polycomb-Target Genes, Represses Stress-Regulated Genes and Promotes Stress Responses in Arabidopsis thaliana
Cited by: 11
Author(s): Julia A. Kleinmanns, Nicole Schatlowski, David Heckmann, Daniel Schubert
Software Mentions: 1
Published: about 7 years ago
10.3389/fpls.2015.00527
Spatial dissection of the Arabidopsis thaliana transcriptional response to downy mildew using Fluorescence Activated Cell Sorting
Cited by: 19
Author(s): Timothy L. R. Coker, Volkan Çevik, Jim Beynon, Miriam L. Gifford
Software Mentions: 1
Published: over 9 years ago
10.3389/fpls.2017.00434
Expression of the Maize Dof1 Transcription Factor in Wheat and Sorghum
Cited by: 45
Author(s): Pamela A. Peña, Truyen Quach, Shirley Sato, Zhengxiang Ge, Natalya Nersesian, Taity Changa, İsmail Dweikat, M. Soundararajan, Tom Clemente
Software Mentions: 1
Published: over 7 years ago
10.3389/fpls.2019.01094
Light Modulates Ethylene Synthesis, Signaling, and Downstream Transcriptional Networks to Control Plant Development
Cited by: 23
Author(s): Alexandria F. Harkey, Gyeong Mee Yoon, Dong Hye Seo, Alison DeLong, Gloria K. Muday
Software Mentions: 1
Published: about 5 years ago
10.3389/fpls.2019.01443
Metabolic Dynamics of Developing Rice Seeds Under High Night-Time Temperature Stress
Cited by: 49
Author(s): Balpreet K. Dhatt, Nathan Abshire, Puneet Paul, Kalani Hasanthika, Jaspreet Sandhu, Qi Zhang, Toshihiro Obata, Harkamal Walia
Software Mentions: 1
Published: about 5 years ago
10.3389/fpls.2019.01131
Transcriptome Profiles of Strawberry (Fragaria vesca) Fruit Interacting With Botrytis cinerea at Different Ripening Stages
Cited by: 45
Author(s): Zeraye Mehari Haile, Ellaine Grace Nagpala-De Guzman, Marco Moretto, Paolo Sonego, Kristof Engelen, Lisa Zoli, C. Moser, Elena Baraldi
Software Mentions: 1
Published: about 5 years ago
10.3390/ijms21155368
Single Cell Transcriptome Analysis of Niemann–Pick Disease, Type C1 Cerebella
Cited by: 17
Author(s): Antony Cougnoux, Julia C Yerger, Mason Fellmeth, Jenny Serra-Vinardell, Kyle B. Martin, Fatemeh Navid, James R. Iben, Christopher A. Wassif, Niamh X. Cawley, Forbes D. Porter
Software Mentions: 1
Published: over 4 years ago
10.1186/1476-4598-8-71
Meta-analysis of glioblastoma multiforme versus anaplastic astrocytoma identifies robust gene markers
Cited by: 56
Author(s): Jonathan M. Dreyfuss, Mark D. Johnson, Peter J. Park
Software Mentions: 1
Published: about 15 years ago
10.3389/fpsyt.2013.00066
Therapeutic Action of Fluoxetine is Associated with a Reduction in Prefrontal Cortical miR-1971 Expression Levels in a Mouse Model of Posttraumatic Stress Disorder
Cited by: 47
Author(s): Ulrike Schmidt, Leonie Herrmann, Kathrin Hagl, Božidar Novak, Christian G. Huber, Florian Holsboer, Carsten T. Wotjak, Dominik R. Buell
Software Mentions: 1
Published: almost 12 years ago
10.3389/fpsyt.2018.00636
A Subset of Patients With Autism Spectrum Disorders Show a Distinctive Metabolic Profile by Dried Blood Spot Analyses
Cited by: 35
Author(s): Rita Barone, Salvatore Alaimo, Marianna Messina, Alfredo Pulvirenti, Jean Bastin, Alfredo Ferro, Richard E. Frye, Renata Rizzo
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12943-019-1072-5
Circ-AKT3 inhibits clear cell renal cell carcinoma metastasis via altering miR-296-3p/E-cadherin signals
Cited by: 112
Author(s): Dingwei Xue, Huan Wang, Yuanlei Chen, Danyang Shen, Jinmei Lu, Mingchao Wang, Abudureheman Zebibula, Liwei Xu, Haiyang Wu, Gonghui Li, Liqun Xia
Software Mentions: 1
Published: about 5 years ago
10.1007/s10142-018-0641-9
Comprehensive analysis of microarray expression profiles of circRNAs and lncRNAs with associated co-expression networks in human colorectal cancer
Cited by: 23
Author(s): Yuan Tian, Yu Xu, Huawei Wang, Ruo Shu, Liang Sun, Yujian Zeng, Fangyou Gong, Yi Lei, Kunhua Wang, Huayou Luo
Software Mentions: 1
Published: about 6 years ago
10.1186/1476-4598-13-159
Downregulation of deoxycytidine kinase in cytarabine-resistant mantle cell lymphoma cells confers cross-resistance to nucleoside analogs gemcitabine, fludarabine and cladribine, but not to other classes of anti-lymphoma agents
Cited by: 29
Author(s): Magdalena Klánová, Lucie Lorková, Ondřej Vít, Bokang Calvin Lenyeletse Maswabi, Jan Molinský, Jana Pospisilova, Petra Vočková, Cory Mavis, Lucie Latečková, Vojtěch Kulvait, Dana Vejmelkova, Radek Jakša, Francisco Hernandez, Marek Trněný, Martin Vokurka, Jir̆ı́ Petrák, Pavel Klener
Software Mentions: 1
Published: over 10 years ago
10.1534/g3.111.001644
Many<i>Saccharomyces cerevisiae</i>Cell Wall Protein Encoding Genes Are Coregulated by Mss11, but Cellular Adhesion Phenotypes Appear Only Flo Protein Dependent
Cited by: 23
Author(s): Michael C. Bester, Dan Jacobson, Florian F. Bauer
Software Mentions: 1
Published: almost 13 years ago
10.1534/g3.111.000422
Deciphering the Molecular Basis of Wine Yeast Fermentation Traits Using a Combined Genetic and Genomic Approach
Cited by: 76
Author(s): Chloé Ambroset, Maud Petit, Christian Brion, Isabelle Sanchez, Pierre Delobel, Cyprien Guérin, Hélène Chiapello, Pierre Nicolas, Frédéric Bigey, Sylvie Dequin, Bruno Blondin
Software Mentions: 1
Published: about 13 years ago
10.1534/g3.112.002279
Convergent Evolution of Calcineurin Pathway Roles in Thermotolerance and Virulence in<i>Candida glabrata</i>
Cited by: 82
Author(s): Ying-Lien Chen, Jay H. Konieczka, Deborah J. Springer, Samantha Bowen, Jing Zhang, Fitz Gerald S. Silao, Alice Alma C. Bungay, Ursela G. Bigol, Marilou G. Nicolas, Soman N. Abraham, Dawn Thompson, Aviv Regev, Joseph Heitman
Software Mentions: 1
Published: over 12 years ago
10.1534/g3.112.005306
Reproductive Status Alters Transcriptomic Response to Infection in Female<i>Drosophila melanogaster</i>
Cited by: 55
Author(s): Sarah M. Short, Brian P. Lazzaro
Software Mentions: 1
Published: over 11 years ago
10.1534/g3.113.006809
Cell-Type–Specific Transcriptional Profiles of the Dimorphic Pathogen <i>Penicillium marneffei</i> Reflect Distinct Reproductive, Morphological, and Environmental Demands
Cited by: 25
Author(s): Shivani Pasricha, Michael Payne, David Cánovas, Luke Pase, Nathamon Ngaosuwankul, Sally Beard, Alicia Oshlack, Gordon K. Smyth, Sansanee C. Chaiyaroj, Kylie J. Boyce, Alex Andrianopoulos
Software Mentions: 1
Published: about 11 years ago
10.1186/1476-4598-12-63
Regulation of protumorigenic pathways by Insulin like growth factor binding protein2 and its association along with β-catenin in breast cancer lymph node metastasis
Cited by: 24
Author(s): Priyanka Sehgal, Neeraj Kumar, Varuvar Rajesh Praveen Kumar, Shilpa Patil, Animesh Bhattacharya, Manavalan Vijaya Kumar, Geetashree Mukherjee, Paturu Kondaiah
Software Mentions: 1
Published: over 11 years ago
10.1534/g3.114.013003
Gene Expression in the Skin of Dogs Sensitized to the House Dust Mite <i>Dermatophagoides farinae</i>
Cited by: 17
Author(s): Paz Schamber, Rachel Schwab-Richards, Stefan Bauersachs, Ralf S. Mueller
Software Mentions: 1
Published: about 10 years ago
10.1534/g3.115.016626
Identification of eQTLs for Hepatic <i>Xbp1s</i> and <i>Socs3</i> Gene Expression in Mice Fed a High-Fat, High-Caloric Diet
Cited by: 3
Author(s): Sarina Pasricha, Jane P. Kenney-Hunt, Kristy A. Anderson, Nadereh Jafari, R Hall, Frank Lammert, James M. Cheverud, Richard M. Green
Software Mentions: 1
Published: over 9 years ago
10.1186/1476-4598-13-67
Ambivalent role of pFAK-Y397 in serous ovarian cancer-a study of the OVCAD consortium
Cited by: 13
Author(s): Stefanie Aust, Katharina Auer, Anna Bachmayr-Heyda, Carsten Denkert, Jalid Sehouli, Elena Ioana Braicu, Sven Mahner, Sandrina Lambrechts, Ignace Vergote, Christoph Grimm, Reinhard Horvat, Dan Cacsire Castillo‐Tong, Robert Zeillinger, Dietmar Pils
Software Mentions: 1
Published: over 10 years ago
10.1186/s13041-020-00658-6
Glutamate-glutamine homeostasis is perturbed in neurons and astrocytes derived from patient iPSC models of frontotemporal dementia
Cited by: 31
Author(s): Blanca I. Aldana, Yu Zhang, Pia Jensen, Abinaya Chandrasekaran, Sofie K. Christensen, Troels Tolstrup Nielsen, Jørgen E. Nielsen, Poul Hyttel, Martin R. Larsen, Kristine Freude
Software Mentions: 1
Published: about 4 years ago
10.1186/s13041-015-0168-0
Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome
Cited by: 32
Author(s): Shahryar Khattak, Elise Brimble, Wenbo Zhang, Kirill Zaslavsky, Emma Strong, P. Joel Ross, Jason A. Hendry, Seema Mital, Michael W. Salter, Lucy R. Osborne, James Ellis
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13041-019-0452-5
Prenatal selective serotonin reuptake inhibitor (SSRI) exposure induces working memory and social recognition deficits by disrupting inhibitory synaptic networks in male mice
Cited by: 17
Author(s): Weonjin Yu, Yi-Chun Yen, Younghwan Lee, Shawn Tan, Xiao Yang, Hidayat Lokman, Audrey Khoo Tze Ting Ting, Hasini Easara Wijayabandara Ganegala, Taejoon Kwon, Won‐Kyung Ho, H. Shawn Je
Software Mentions: 1
Published: over 5 years ago
10.1155/2016/2968106
Identification of the Key Genes and Pathways in Esophageal Carcinoma
Cited by: 17
Author(s): Peng Su, Wen Pang Su, Yuefeng Zhang, Li Yong, Yong Xu, Yao Zhu, Huilai Lv, Fan Zhang, Ming-Bo Wang, Ziqiang Tian
Software Mentions: 1
Published: almost 9 years ago
10.1155/2020/8834359
hsa_circRNA_000166 Facilitated Cell Growth and Limited Apoptosis through Targeting miR-326/LASP1 Axis in Colorectal Cancer
Cited by: 7
Author(s): Hao Qin, Zhongtao Zhang
Software Mentions: 1
Published: almost 4 years ago
10.1186/s13041-015-0095-0
Up-regulation of neural and cell cycle-related microRNAs in brain of amyotrophic lateral sclerosis mice at late disease stage
Cited by: 45
Author(s): Stefania Marcuzzo, Silvia Bonanno, Dimos Kapetis, Claudia Barzago, Paola Cavalcante, Sara D’Alessandro, Renato Mantegazza, Pia Bernasconi
Software Mentions: 1
Published: almost 10 years ago
10.1186/s13041-019-0467-y
Brain transcriptome analysis of a familial Alzheimer’s disease-like mutation in the zebrafish presenilin 1 gene implies effects on energy production
Cited by: 31
Author(s): Morgan Newman, Nhi Hin, Stephen Pederson, Michael Lardelli
Software Mentions: 1
Published: over 5 years ago
10.1111/jcmm.15866
Extracellular vesicles‐encapsulated let‐7i shed from bone mesenchymal stem cells suppress lung cancer <i>via</i> KDM3A/DCLK1/FXYD3 axis
Cited by: 22
Author(s): Jiefeng Liu, Yuhua Feng, Xinyu Zeng, Miao He, Yujing Gong, Yiping Liu
Software Mentions: 1
Published: almost 4 years ago
10.1186/s13229-015-0061-9
Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures
Cited by: 18
Author(s): Daria Prilutsky, Alvin T. Kho, Nathan Palmer, Asha L. Bhakar, Niklas Smedemark-Margulies, Sek Won Kong, David M. Margulies, Mark F. Bear, Isaac S. Kohane
Software Mentions: 1
Published: almost 9 years ago
10.1111/jcmm.15765
Cancer‐associated fibroblast‐derived exosomal microRNA‐24‐3p enhances colon cancer cell resistance to MTX by down‐regulating CDX2/HEPH axis
Cited by: 40
Author(s): Hongwei Zhang, Yi Shi, Ji‐Bin Liu, Huimin Wang, Pei‐Yao Wang, Zhijun Wu, Liu Li, Li‐Peng Gu, Ping‐Sheng Cao, Gao‐Ren Wang, Yu‐Shui Ma, Da Fu
Software Mentions: 1
Published: over 3 years ago
10.3390/microorganisms8101541
The Proteome of Community Living Candida albicans Is Differentially Modulated by the Morphologic and Structural Features of the Bacterial Cohabitants
Cited by: 1
Author(s): Tin Truong, Li Mei Pang, Suhasini Rajan, Sarah Sze Wah Wong, YS Fung, LP Samaranayake, Chaminda Jayampath Seneviratne
Software Mentions: 1
Published: about 4 years ago
10.3390/ijms21176396
Circulating Exosomal miRNAs Signal Circadian Misalignment to Peripheral Metabolic Tissues
Cited by: 20
Author(s): Abdelnaby Khalyfa, Shobhan Gaddameedhi, Elena Crooks, Chunyu Zhang, Yan Li, Zhuanhong Qiao, Wojciech Trzépizur, Steve A. Kay, Jorge Andrade, Brieann C. Satterfield, Devon Hansen, Leila Kheirandish‐Gozal, Hans P A Van Dongen, David Gozal
Software Mentions: 1
Published: about 4 years ago
10.1186/1471-2164-13-239
Yeast glucose pathways converge on the transcriptional regulation of trehalose biosynthesis
Cited by: 28
Author(s): Eva Apweiler, Katrin Sameith, Thanasis Margaritis, Nathalie Brabers, Loes van de Pasch, Linda V. Bakker, Dik van Leenen, Frank C. P. Holstege, Patrick Kemmeren
Software Mentions: 1
Published: over 12 years ago
10.1111/jcmm.16405
miR‐365 secreted from M2 Macrophage‐derived extracellular vesicles promotes pancreatic ductal adenocarcinoma progression through the BTG2/FAK/AKT axis
Cited by: 21
Author(s): Xin Li, Hao Xu, Jianfeng Yi, Changfeng Dong, Hui Zhang, Zhengfeng Wang, Long Miao, Wence Zhou
Software Mentions: 1
Published: over 3 years ago
10.1111/jcmm.16523
Bioinformatic analysis and validation of microRNA‐508‐3p as a protective predictor by targeting NR4A3/MEK axis in pulmonary arterial hypertension
Cited by: 8
Author(s): Yi Ma, Shu-Shu Chen, Jiang Fen, Ru-Yi Ma, Huanliang Wang
Software Mentions: 1
Published: over 3 years ago
10.3390/microorganisms5010012
Transcriptomic Complexity of Aspergillus terreus Velvet Gene Family under the Influence of Butyrolactone I
Cited by: 20
Author(s): Elina K. Palonen, Sheetal Raina, Annika Brandt, Jussi Meriluoto, Tajalli Keshavarz, Jari Soini
Software Mentions: 1
Published: over 7 years ago
10.1111/jcmm.16756
IRF1 as a potential biomarker in <i>Mycobacterium tuberculosis</i> infection
Cited by: 1
Author(s): Liwei Wu, Qiliang Cheng, Wen Zhu, Yanzheng Song, Yijun Zhu, Lin Wang
Software Mentions: 1
Published: over 3 years ago
10.1111/jcmm.16745
TNF‐α induces up‐regulation of MicroRNA‐27a via the P38 signalling pathway, which inhibits intervertebral disc degeneration by targeting FSTL1
Cited by: 6
Author(s): Jihong Shi, Shaoyi Wang, Qiting He, Kaiwen Liu, Weihua Zhao, Qing Xie, Lei Cheng
Software Mentions: 1
Published: over 3 years ago
10.1111/jcmm.16792
P53 suppresses the progression of hepatocellular carcinoma via miR‐15a by decreasing OGT expression and EZH2 stabilization
Cited by: 10
Author(s): Zhenyu You, Dandan Peng, Yixin Cao, Yuanzhe Zhu, Jianjun Yin, Guangxing Zhang, Xiao-Dong Peng
Software Mentions: 1
Published: about 3 years ago
10.1111/jcmm.16844
MALAT1 shuttled by extracellular vesicles promotes M1 polarization of macrophages to induce acute pancreatitis via miR‐181a‐5p/HMGB1 axis
Cited by: 19
Author(s): Jie Liu, Zequn Niu, Rui Zhang, Zhuo Peng, Liming Wang, Zhong Liu, Yanxia Gao, Honghong Pei, Longfei Pan
Software Mentions: 1
Published: about 3 years ago
10.1002/jcp.28789
A miR‐206 regulated gene landscape enhances mammary epithelial differentiation
Cited by: 8
Author(s): Jun Wang, Eylem Aydoğdu, Srijita Mukhopadhyay, Luísa A. Helguero, Cecilia Williams
Software Mentions: 1
Published: over 5 years ago
10.1242/jcs.184291
Pax8 controls thyroid follicular polarity through Cadherin-16
Cited by: 34
Author(s): Petrina Koumarianou, Gonzalo Goméz-López, Pilar Santisteban
Software Mentions: 1
Published: almost 9 years ago
10.1177/0271678X211004307
Global proteomic analysis of extracellular matrix in mouse and human brain highlights relevance to cerebrovascular disease
Cited by: 11
Author(s): Alexandra Pokhilko, Gaia Brezzo, Lahiru Handunnetthi, Raphael Heilig, Rachel Lennon, Colin Smith, Stuart M. Allan, Alessandra Granata, Sanjay Sinha, T Wang, Hugh S. Markus, Alexandra Naba, Román Fischer, Tom Van Agtmael, Karen Horsburgh, M Z Cader
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms21176092
Metabolite Patterns in Human Myeloid Hematopoiesis Result from Lineage-Dependent Active Metabolic Pathways
Cited by: 4
Author(s): Lars Kaiser, Helga Weinschrott, Isabel Quint, Markus Blaess, René Csuk, Manfred Jung, Matthias Kohl, Hans‐Peter Deigner
Software Mentions: 1
Published: over 4 years ago
10.1210/clinem/dgz266
Muscle-Liver Substrate Fluxes in Exercising Humans and Potential Effects on Hepatic Metabolism
Cited by: 23
Author(s): Chunxiu Hu, Miriam Hoene, Peter Plomgaard, Jørn Bindslev Hansen, Xinjie Zhao, Jia Li, Xiaolin Wang, J Clemmesen, Niels H. Secher, Hans Ulrich Häring, Rainer Lehmann, Guowang Xu, Cora Weigert
Software Mentions: 1
Published: almost 5 years ago
10.3390/microorganisms9030667
Molecular Physiological Characterization of a High Heat Resistant Spore Forming Bacillus subtilis Food Isolate
Cited by: 10
Author(s): Zhiwei Tu, Peter Setlow, Stanley Brul, Gertjan Kramer
Software Mentions: 1
Published: over 3 years ago
10.1172/JCI125170
Sonic Hedgehog signaling limits atopic dermatitis via Gli2-driven immune regulation
Cited by: 36
Author(s): Eleftheria Papaioannou, Diana C. Yánez, Scott R. Ross, Ching‐In Lau, Anisha Solanki, Mira Manilal Chawda, Alex Virasami, Ismael Ranz, M. Ono, R O'Shaughnessy, Tessa Crompton
Software Mentions: 1
Published: over 5 years ago
10.1186/1471-2164-8-350
Cadmium triggers an integrated reprogramming of the metabolism of Synechocystis PCC6803, under the control of the Slr1738 regulator
Cited by: 85
Author(s): Laetitia Houot, Martin Floutier, Benoît Marteyn, Magali Michaut, Antoine Picciocchi, Pierre Legrain, Jean-Christophe Aude, Corinne Cassier‐Chauvat, Franck Chauvat
Software Mentions: 1
Published: about 17 years ago
10.1186/s40168-021-01050-9
The pregnane X receptor drives sexually dimorphic hepatic changes in lipid and xenobiotic metabolism in response to gut microbiota in mice
Cited by: 11
Author(s): Sharon Ann Barretto, Frédèric Lasserre, Marine Huillet, Marion Régnier, Arnaud Polizzi, Yannick Lippi, Anne Fougerat, Elodie Person, Sandrine Bruel, Colette Bétoulières, Claire Naylies, Céline Lukowicz, Sarra Smati, Laurence Guzylack, Maı̈wenn Olier, Vassilia Théodorou, Laïla Mselli-Lakhal, Daniel Zalko, Walter Wahli, Nicolas Loiseau, Laurence Gamet-Payrastre, Hervé Guillou, Sandrine Ellero‐Simatos
Software Mentions: 1
Published: over 3 years ago
10.1002/jcla.23393
Identification of plasma hsa_circ_0008673 expression as a potential biomarker and tumor regulator of breast cancer
Cited by: 26
Author(s): Youting Hu, Qi Song, Jinmin Zhao, Jian Ruan, Fan He, Xia Yang, Xindi Yu
Software Mentions: 1
Published: over 4 years ago
10.1002/jcla.23584
Microinjection manipulation decreases the expression of GABA‐A receptor signaling pathway genes in mouse embryos derived using intracytoplasmic sperm injection
Cited by: 0
Author(s): Zili Zhang, Ting Wang, Juanhua Huang, Yu‐Yao Huang, Qingxue Zhang
Software Mentions: 1
Published: about 4 years ago
10.1002/jcla.23588
Bioinformatics analysis of differentially expressed miRNAs in non‐small cell lung cancer
Cited by: 14
Author(s): Hui Yu, Zhonghao Pang, Gang Li, Tianyi Gu
Software Mentions: 1
Published: about 4 years ago
10.1002/jcla.23779
A ten N6‐methyladenosine‐related long non‐coding RNAs signature predicts prognosis of triple‐negative breast cancer
Cited by: 19
Author(s): Jie Wu, Yan Cai, Gaiping Zhao, Maolan Li
Software Mentions: 1
Published: over 3 years ago
10.1186/s40168-021-01128-4
Distinct B cell subsets in Peyer’s patches convey probiotic effects by Limosilactobacillus reuteri
Cited by: 17
Author(s): Haoyu Liu, Antoine Giraud, Cédric Seignez, David Ahl, Fan Guo, John Sedin, Tomas B. Waldén, Jee-Hwan Oh, Jan Peter van Pijkeren, Lena Holm, Stefan Roos, Stefan Bertilsson, Mia Phillipson
Software Mentions: 1
Published: about 3 years ago
10.1099/mic.0.055863-0
Vru (Sub0144) controls expression of proven and putative virulence determinants and alters the ability of Streptococcus uberis to cause disease in dairy cattle
Cited by: 13
Author(s): Sharon A. Egan, Philip N. Ward, Michael Watson, Terence R. Field, James A. Leigh
Software Mentions: 1
Published: over 12 years ago
10.3390/jcm9051276
Gene Expression Patterns Distinguish Mortality Risk in Patients with Postsurgical Shock
Cited by: 7
Author(s): Pedro Martínez-Paz, Marta Aragón-Camino, Esther Gómez-Sánchez, Mario Lorenzo-López, Estefanía Gómez-Pesquera, Rocío López-Herrero, Belén Sánchez-Quirós, Olga de la Varga, Álvaro Tamayo-Velasco, Christian Ortega-Loubón, Emilio García‐Morán, Hugo Gonzalo, María Heredia-Rodríguez, Eduardo Tamayo
Software Mentions: 1
Published: over 4 years ago
10.1002/mbo3.1107
Role of the microbiota in ileitis of a mouse model of inflammatory bowel disease—Glutathione peroxide isoenzymes 1 and 2‐double knockout mice on a C57BL background
Cited by: 2
Author(s): Fong‐Fong Chu, R. Steven Esworthy, Binghui Shen, James H. Doroshow
Software Mentions: 1
Published: over 4 years ago
10.1186/1475-2859-9-60
New method for selection of hydrogen peroxide adapted bifidobacteria cells using continuous culture and immobilized cell technology
Cited by: 21
Author(s): Valeria Mozzetti, Franck Grattepanche, D Moine, Bernard Berger, Enea Rezzonico, Léo Meile, Fabrizio Arigoni, Christophe Lacroix
Software Mentions: 1
Published: over 14 years ago
10.1186/s12934-015-0381-7
Systems analysis of methylerythritol-phosphate pathway flux in E. coli: insights into the role of oxidative stress and the validity of lycopene as an isoprenoid reporter metabolite
Cited by: 23
Author(s): Mareike Bongers, Panagiotis K. Chrysanthopoulos, James B. Y. H. Behrendorff, Mark P. Hodson, Claudia E. Vickers, Lars K. Nielsen
Software Mentions: 1
Published: almost 9 years ago
10.3390/ijms21186660
The brlA Gene Deletion Reveals That Patulin Biosynthesis Is Not Related to Conidiation in Penicillium expansum
Cited by: 7
Author(s): Chrystian Zetina-Serrano, Ophélie Rocher, Claire Naylies, Yannick Lippi, Isabelle P. Oswald, Sophie Lorber, Olivier Puel
Software Mentions: 1
Published: about 4 years ago
10.1186/s12934-017-0730-9
Biomarkers allow detection of nutrient limitations and respective supplementation for elimination in Pichia pastoris fed-batch cultures
Cited by: 17
Author(s): Jonas Burgard, Minoska Valli, Alexandra B. Graf, Brigitte Gasser, Diethard Mattanovich
Software Mentions: 1
Published: over 7 years ago
10.1155/2013/589451
The Effect of Diabetes-Associated Autoantigens on Cell Processes in Human PBMCs and Their Relevance to Autoimmune Diabetes Development
Cited by: 4
Author(s): Jana Včeláková, Radek Blatný, Z. Halbhuber, Michal Kolář, Aleš Neuwirth, Lenka Petruželková, Tereza Ulmannová, Stanislava Koloušková, Zdenĕk Šumnı́k, Pavlína Piťhová, M Krivjanska, Dominik Filipp, Kateřina Štechová
Software Mentions: 1
Published: almost 12 years ago
10.1155/2014/763936
Targets and Candidate Agents for Type 2 Diabetes Treatment with Computational Bioinformatics Approach
Cited by: 10
Author(s): Qiong Wang, Zhigang Zhao, Jing Shang, Wei Xia
Software Mentions: 1
Published: almost 11 years ago
10.1155/2018/7361684
A Transcriptional Sequencing Analysis of Islet Stellate Cell and Pancreatic Stellate Cell
Cited by: 10
Author(s): Xiaohang Wang, Wei Li, Juan Chen, Sheng Zhao, Shanhu Qiu, Han Yin, Vladmir Carvalho, Yunting Zhou, Ruifeng Shi, Jiannan Hu, Shenyi Li, Munire Nijiati, Zilin Sun
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12934-016-0496-5
Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea
Cited by: 22
Author(s): Katarina Karničar, Igor Drobnak, Marko Petek, Vasilka Magdevska, Jaka Horvat, Robert Vidmar, Špela Baebler, Ana Rotter, Polona Jamnik, Štefan Fujs, Boris Turk, Marko Fonović, Kristina Gruden, Gregor Kosec, Hrvoje Petković
Software Mentions: 1
Published: over 8 years ago
10.1186/1475-2859-10-104
The impact of phosphate scarcity on pharmaceutical protein production in S. cerevisiae: linking transcriptomic insights to phenotypic responses
Cited by: 7
Author(s): Ali Kazemi Seresht, Eva Palmqvist, Lisbeth Olsson
Software Mentions: 1
Published: almost 13 years ago
10.1093/jxb/eru145
Heterografting with nonself rootstocks induces genes involved in stress responses at the graft interface when compared with autografted controls
Cited by: 85
Author(s): Sarah Jane Cookson, María José Clemente‐Moreno, Cyril Hévin, Larissa Zita Nyamba Mendome, Serge Delrot, Noël Magnin, Claudine Trossat-Magnin, Nathalie Ollat
Software Mentions: 1
Published: over 10 years ago
10.1093/jxb/erw295
Spatial and temporal transcriptome changes occurring during flower opening and senescence of the ephemeral hibiscus flower,<i>Hibiscus rosa-sinensis</i>
Cited by: 30
Author(s): Alice Trivellini, Giacomo Cocetta, Donald A. Hunter, Paolo Vernieri, António Ferrante
Software Mentions: 1
Published: about 8 years ago
10.1093/jxb/erx104
Complexity and specificity of the maize (Zea mays L.) root hair transcriptome
Cited by: 18
Author(s): Stefan Hey, Jutta A. Baldauf, Nina Opitz, Andrew Lithio, Asher Pasha, Nicholas J. Provart, Dan Nettleton, Frank Hochholdinger
Software Mentions: 1
Published: over 7 years ago
10.1186/s12934-014-0120-5
Pichia pastoris Aft1 - a novel transcription factor, enhancing recombinant protein secretion
Cited by: 30
Author(s): Claudia Ruth, Markus Buchetics, Viktorija Vidimce, Daniela Kotz, Stefan Naschberger, Diethard Mattanovich, Harald Pichler, Brigitte Gasser
Software Mentions: 1
Published: about 10 years ago
10.3390/ijms21186858
Preventive Triple Gene Therapy Reduces the Negative Consequences of Ischemia-Induced Brain Injury after Modelling Stroke in a Rat
Cited by: 13
Author(s): Vage Markosyan, Zufar Z. Safiullov, Andrei Izmailov, Filip Fadeev, Mikhail Sokolov, M. S. Kuznetsov, Д. А. Трофимов, Evgeny Kim, Grayr Kundakchyan, Airat Gibadullin, И. И. Салафутдинов, Л. Ф. Нуруллин, Farid Vagizovich Bashirov, Р. Р. Исламов
Software Mentions: 1
Published: about 4 years ago