10.3389/fgene.2021.569318

A Signature of Autophagy-Related Long Non-coding RNA to Predict the Prognosis of Breast Cancer
Cited by: 10
Author(s): Xiaoping Li, Jishang Chen, Qihe Yu, Hui Huang, Zhuangsheng Liu, Chengxing Wang, Yuan He, Xin Zhang, Weiwen Li, Chao Li, Jinglin Zhao, Wansheng Long
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.01030

Long Non-coding RNA AGAP2-AS1 Silencing Inhibits PDLIM5 Expression Impeding Prostate Cancer Progression via Up-Regulation of MicroRNA-195-5p
Cited by: 11
Author(s): Pingbo Xie, Mingsheng Liu, Fen Chen, Shuo Wu, Tao Shao, Wei Wang, Chen-Xiang Xu, Huijie Zhou
Software Mentions: 1
Published: about 6 years ago

10.1186/1476-4598-13-67

Ambivalent role of pFAK-Y397 in serous ovarian cancer-a study of the OVCAD consortium
Cited by: 13
Author(s): Stefanie Aust, Katharina Auer, Anna Bachmayr-Heyda, Carsten Denkert, Jalid Sehouli, Elena Ioana Braicu, Sven Mahner, Sandrina Lambrechts, Ignace Vergote, Christoph Grimm, Reinhard Horvat, Dan Cacsire Castillo‐Tong, Robert Zeillinger, Dietmar Pils
Software Mentions: 1
Published: over 12 years ago

10.1186/s13041-020-00658-6

Glutamate-glutamine homeostasis is perturbed in neurons and astrocytes derived from patient iPSC models of frontotemporal dementia
Cited by: 31
Author(s): Blanca I. Aldana, Yu Zhang, Pia Jensen, Abinaya Chandrasekaran, Sofie K. Christensen, Troels Tolstrup Nielsen, Jørgen E. Nielsen, Poul Hyttel, Martin R. Larsen, Kristine Freude
Software Mentions: 1
Published: about 6 years ago

10.1186/s12859-018-2117-2

Robust volcano plot: identification of differential metabolites in the presence of outliers
Cited by: 25
Author(s): Nishith Kumar, Md. Rakibul Hoque, Masahiro Sugimoto
Software Mentions: 1
Published: over 8 years ago

10.1186/s13041-015-0168-0

Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome
Cited by: 32
Author(s): Shahryar Khattak, Elise Brimble, Wenbo Zhang, Kirill Zaslavsky, Emma Strong, P. Joel Ross, Jason A. Hendry, Seema Mital, Michael W. Salter, Lucy R. Osborne, James Ellis
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.gdata.2016.01.016

Microarray analysis of kiwifruit ( Actinidia chinensis ) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae)
Cited by: 0
Author(s): M. G. Hill, Kirstin Wurms, Marcus Davy, Elaine M. Gould, Andrew C. Allan, N. A. Mauchline, Zhiwei Luo, A. Ah Chee, Kate Stannard, Roy Storey, Erik H. A. Rikkerink
Software Mentions: 1
Published: over 10 years ago

10.1186/s13041-019-0452-5

Prenatal selective serotonin reuptake inhibitor (SSRI) exposure induces working memory and social recognition deficits by disrupting inhibitory synaptic networks in male mice
Cited by: 17
Author(s): Weonjin Yu, Yi-Chun Yen, Younghwan Lee, Shawn Tan, Xiao Yang, Hidayat Lokman, Audrey Khoo Tze Ting Ting, Hasini Easara Wijayabandara Ganegala, Taejoon Kwon, Won‐Kyung Ho, H. Shawn Je
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2018.00241

Gradual and Acute Temperature Rise Induces Crossing Endocrine, Metabolic, and Immunological Pathways in Maraena Whitefish (Coregonus maraena)
Cited by: 24
Author(s): Alexander Rebl, Marieke Verleih, Mareen Nipkow, Simone Altmann, Ralf Bochert, Tom Goldammer
Software Mentions: 1
Published: about 8 years ago

10.1186/s13041-015-0095-0

Up-regulation of neural and cell cycle-related microRNAs in brain of amyotrophic lateral sclerosis mice at late disease stage
Cited by: 45
Author(s): Stefania Marcuzzo, Silvia Bonanno, Dimos Kapetis, Claudia Barzago, Paola Cavalcante, Sara D’Alessandro, Renato Mantegazza, Pia Bernasconi
Software Mentions: 1
Published: over 11 years ago

10.1186/s13041-019-0467-y

Brain transcriptome analysis of a familial Alzheimer’s disease-like mutation in the zebrafish presenilin 1 gene implies effects on energy production
Cited by: 31
Author(s): Morgan Newman, Nhi Hin, Stephen Pederson, Michael Lardelli
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-14-59

Active subnetwork recovery with a mechanism-dependent scoring function; with application to angiogenesis and organogenesis studies
Cited by: 3
Author(s): Ilana Lichtenstein, Michael A. Charleston, Tibério Caetano, Jennifer R. Gamble, Mathew A. Vadas
Software Mentions: 1
Published: over 13 years ago

10.3389/fgene.2020.580036

Effect of N6-Methyladenosine Regulators on Progression and Prognosis of Triple-Negative Breast Cancer
Cited by: 24
Author(s): Shanshan Wang, Xuan Zou, Yajie Chen, William C. Cho, Xiang Zhou
Software Mentions: 1
Published: over 5 years ago

10.1186/s13229-015-0061-9

Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures
Cited by: 18
Author(s): Daria Prilutsky, Alvin T. Kho, Nathan Palmer, Asha L. Bhakar, Niklas Smedemark-Margulies, Sek Won Kong, David M. Margulies, Mark F. Bear, Isaac S. Kohane
Software Mentions: 1
Published: almost 11 years ago

10.3390/microorganisms8101541

The Proteome of Community Living Candida albicans Is Differentially Modulated by the Morphologic and Structural Features of the Bacterial Cohabitants
Cited by: 1
Author(s): Tin Truong, Li Mei Pang, Suhasini Rajan, Sarah Sze Wah Wong, YS Fung, LP Samaranayake, Chaminda Jayampath Seneviratne
Software Mentions: 1
Published: about 6 years ago

10.3390/microorganisms5010012

Transcriptomic Complexity of Aspergillus terreus Velvet Gene Family under the Influence of Butyrolactone I
Cited by: 20
Author(s): Elina K. Palonen, Sheetal Raina, Annika Brandt, Jussi Meriluoto, Tajalli Keshavarz, Jari Soini
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms9030667

Molecular Physiological Characterization of a High Heat Resistant Spore Forming Bacillus subtilis Food Isolate
Cited by: 10
Author(s): Zhiwei Tu, Peter Setlow, Stanley Brul, Gertjan Kramer
Software Mentions: 1
Published: over 5 years ago

10.1186/s40168-021-01050-9

The pregnane X receptor drives sexually dimorphic hepatic changes in lipid and xenobiotic metabolism in response to gut microbiota in mice
Cited by: 11
Author(s): Sharon Ann Barretto, Frédèric Lasserre, Marine Huillet, Marion Régnier, Arnaud Polizzi, Yannick Lippi, Anne Fougerat, Elodie Person, Sandrine Bruel, Colette Bétoulières, Claire Naylies, Céline Lukowicz, Sarra Smati, Laurence Guzylack, Maı̈wenn Olier, Vassilia Théodorou, Laïla Mselli-Lakhal, Daniel Zalko, Walter Wahli, Nicolas Loiseau, Laurence Gamet-Payrastre, Hervé Guillou, Sandrine Ellero‐Simatos
Software Mentions: 1
Published: over 5 years ago

10.1186/s40168-021-01128-4

Distinct B cell subsets in Peyer’s patches convey probiotic effects by Limosilactobacillus reuteri
Cited by: 17
Author(s): Haoyu Liu, Antoine Giraud, Cédric Seignez, David Ahl, Fan Guo, John Sedin, Tomas B. Waldén, Jee-Hwan Oh, Jan Peter van Pijkeren, Lena Holm, Stefan Roos, Stefan Bertilsson, Mia Phillipson
Software Mentions: 1
Published: about 5 years ago

10.1099/mic.0.055863-0

Vru (Sub0144) controls expression of proven and putative virulence determinants and alters the ability of Streptococcus uberis to cause disease in dairy cattle
Cited by: 13
Author(s): Sharon A. Egan, Philip N. Ward, Michael Watson, Terence R. Field, James A. Leigh
Software Mentions: 1
Published: over 14 years ago

10.1002/mbo3.1107

Role of the microbiota in ileitis of a mouse model of inflammatory bowel disease—Glutathione peroxide isoenzymes 1 and 2‐double knockout mice on a C57BL background
Cited by: 2
Author(s): Fong‐Fong Chu, R. Steven Esworthy, Binghui Shen, James H. Doroshow
Software Mentions: 1
Published: about 6 years ago

10.1186/1475-2859-9-60

New method for selection of hydrogen peroxide adapted bifidobacteria cells using continuous culture and immobilized cell technology
Cited by: 21
Author(s): Valeria Mozzetti, Franck Grattepanche, D Moine, Bernard Berger, Enea Rezzonico, Léo Meile, Fabrizio Arigoni, Christophe Lacroix
Software Mentions: 1
Published: about 16 years ago

10.1186/s12934-015-0381-7

Systems analysis of methylerythritol-phosphate pathway flux in E. coli: insights into the role of oxidative stress and the validity of lycopene as an isoprenoid reporter metabolite
Cited by: 23
Author(s): Mareike Bongers, Panagiotis K. Chrysanthopoulos, James B. Y. H. Behrendorff, Mark P. Hodson, Claudia E. Vickers, Lars K. Nielsen
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12934-017-0730-9

Biomarkers allow detection of nutrient limitations and respective supplementation for elimination in Pichia pastoris fed-batch cultures
Cited by: 17
Author(s): Jonas Burgard, Minoska Valli, Alexandra B. Graf, Brigitte Gasser, Diethard Mattanovich
Software Mentions: 1
Published: over 9 years ago

10.1186/s12934-016-0496-5

Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea
Cited by: 22
Author(s): Katarina Karničar, Igor Drobnak, Marko Petek, Vasilka Magdevska, Jaka Horvat, Robert Vidmar, Špela Baebler, Ana Rotter, Polona Jamnik, Štefan Fujs, Boris Turk, Marko Fonović, Kristina Gruden, Gregor Kosec, Hrvoje Petković
Software Mentions: 1
Published: over 10 years ago

10.1186/1475-2859-10-104

The impact of phosphate scarcity on pharmaceutical protein production in S. cerevisiae: linking transcriptomic insights to phenotypic responses
Cited by: 7
Author(s): Ali Kazemi Seresht, Eva Palmqvist, Lisbeth Olsson
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12934-014-0120-5

Pichia pastoris Aft1 - a novel transcription factor, enhancing recombinant protein secretion
Cited by: 30
Author(s): Claudia Ruth, Markus Buchetics, Viktorija Vidimce, Daniela Kotz, Stefan Naschberger, Diethard Mattanovich, Harald Pichler, Brigitte Gasser
Software Mentions: 1
Published: about 12 years ago

10.15698/mic2014.11.173

Overexpression of the transcription factor Yap1 modifies intracellular redox conditions and enhances recombinant protein secretion
Cited by: 24
Author(s): Marizela Delic, Alexandra B. Graf, Gunda Koellensperger, Christina Troyer, Stephan Hann, Diethard Mattanovich, Brigitte Gasser
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2105-8-218

Novel and simple transformation algorithm for combining microarray data sets
Cited by: 12
Author(s): Ki Yeol Kim, Dong Hyuk Ki, Hana Jeong, Hei Cheul Jeung, Hyun Cheol Chung, Sun Young Rha
Software Mentions: 1
Published: over 19 years ago

10.1111/1751-7915.12109

Transcriptomic analysis of <scp> <i>S</i> </scp> <i>treptomyces clavuligerus</i> Δ <scp> <i>ccaR</i> </scp> <i>::</i> <scp> <i>tsr</i> </scp> : effects of the cephamycin <scp>C</scp> ‐clavulanic acid cluster regulator <scp>CcaR</scp> on global regulation
Cited by: 22
Author(s): Rubén Álvarez-Álvarez, Antonio Rodríguez‐García, Irene Santamarta, Rosario Pérez‐Redondo, A. Prieto‐Domínguez, Yolanda Martínez-Burgo, Paloma Liras
Software Mentions: 1
Published: over 12 years ago

10.18632/aging.203056

Comprehensive analysis of the competing endogenous circRNA-lncRNA-miRNA-mRNA network and identification of a novel potential biomarker for hepatocellular carcinoma
Cited by: 28
Author(s): Lu Zhang, Haisu Tao, Li Jiang, Erlei Zhang, Huifang Liang, Bixiang Zhang
Software Mentions: 1
Published: over 5 years ago

10.3390/microarrays5020010

Stromal Activation by Tumor Cells: An in Vitro Study in Breast Cancer
Cited by: 5
Author(s): Giuseppe Merlino, Patrizia Miodini, Biagio Paolini, Maria Luisa Carcangiu, Massimiliano Gennaro, Matteo Dugo, Maria Grazia Daidone, Vera Cappelletti
Software Mentions: 1
Published: over 10 years ago

10.3390/microarrays3040263

Expression Comparison of Oil Biosynthesis Genes in Oil Palm Mesocarp Tissue Using Custom Array
Cited by: 12
Author(s): Yick Ching Wong, Qi Bin Kwong, Heng Leng Lee, Chuang Kee Ong, Sean Mayes, Fook Tim Chew, David R. Appleton, Harikrishna Kulaveerasingam
Software Mentions: 1
Published: almost 12 years ago

10.3389/fgene.2020.563882

Identification of a Twelve-Gene Signature and Establishment of a Prognostic Nomogram Predicting Overall Survival for Medulloblastoma
Cited by: 6
Author(s): Sihan Zhu, Fei Lin, Zhenghe Chen, Xiaobing Jiang, Zhang Ji, Qiulan Yang, Yinsheng Chen, Jian Wang
Software Mentions: 1
Published: about 6 years ago

10.1016/j.gdata.2015.05.010

Transcriptional profiling of HOXA9-regulated genes in human glioblastoma cell models
Cited by: 11
Author(s): Céline S. Gonçalves, Ana Xavier‐Magalhães, Marta Pojo, Ana I. Oliveira, Sara Correia, Rui Manuel Reis, Nuno Sousa, Miguel Rocha, Bruno M. Costa
Software Mentions: 1
Published: about 11 years ago

10.1007/s11306-016-1084-8

Integration of targeted metabolomics and transcriptomics identifies deregulation of phosphatidylcholine metabolism in Huntington’s disease peripheral blood samples
Cited by: 40
Author(s): Anastasios Mastrokolias, René Pool, Eleni Mina, Kristina Hettne, Erik van Duijn, Roos C. van der Mast, Gert-Jan van Ommen, Peter A.C. ’t Hoen, Cornelia Prehn, Jerzy Adamski, Willeke van Roon-Mom
Software Mentions: 1
Published: about 10 years ago

10.3390/metabo11080481

Autophagy Deficiency by Atg4B Loss Leads to Metabolomic Alterations in Mice
Cited by: 4
Author(s): Gemma G. Martínez-García, Raúl Fernández Pérez, Álvaro F. Fernández, Sylvère Durand, Guido Kroemer, Guillermo Mariño
Software Mentions: 1
Published: about 5 years ago

10.3390/metabo10070268

Metabolic Signatures of Tumor Responses to Doxorubicin Elucidated by Metabolic Profiling in Ovo
Cited by: 17
Author(s): Iman W Achkar, Sara Abdul Kader, Shaima S. Dib, Kulsoom Junejo, Salha Bujassoum Al‐Bader, Shahina Hayat, Aditya Bhagwat, Xavier Rousset, Yan Wang, Jean Viallet, Karsten Suhre, Anna Halama
Software Mentions: 1
Published: over 6 years ago

10.3390/metabo11040195

Metabolic Signature of Arrhythmogenic Cardiomyopathy
Cited by: 5
Author(s): Chiara Volani, Johannes Michael Rainer, Vinicius Veri Hernandes, Viviana Meraviglia, Peter P. Pramstaller, Sigurdur Smarason, Giulio Pompilio, Michela Casella, Elena Sommariva, Giuseppe Paglia, Alessandra Rossini
Software Mentions: 1
Published: over 5 years ago

10.3390/membranes11090674

Bioinformatic Analysis of ABCA1 Gene Expression in Smoking and Chronic Obstructive Pulmonary Disease
Cited by: 4
Author(s): Stanislav Kotlyarov, Anna Kotlyarova
Software Mentions: 1
Published: about 5 years ago

10.1007/s12032-021-01470-5

Identification BCL6 and miR-30 family associating with Ibrutinib resistance in activated B-cell-like diffuse large B-cell lymphoma
Cited by: 5
Author(s): Jiazheng Li, Yan Huang, Yun Zhang, Junping Wen, Yanxin Chen, Lingyan Wang, Peifang Jiang, Jianda Hu
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.575770

TMPRSS2 Correlated With Immune Infiltration Serves as a Prognostic Biomarker in Prostatic Adenocarcinoma: Implication for the COVID-2019
Cited by: 3
Author(s): Lianxiang Luo, Yi Zheng, Mingyue Li, Xinjie Lin, Xiaodi Li, Xiaoling Li, Liao Cui, Hui Luo
Software Mentions: 1
Published: about 6 years ago

10.1186/s12859-018-2173-7

Beyond the one-way ANOVA for ’omics data
Cited by: 10
Author(s): Kirsty L. Hassall, Andrew Mead
Software Mentions: 1
Published: over 8 years ago

10.1097/MD.0000000000027058

Exploration of immune-related cells and ceRNA in squamous cell lung cancer
Cited by: 0
Author(s): Lijun Wang, Hao Wang, Ke Xu, Yehong Xu, Yong Wang, Wei Song, Zhihong Zhang
Software Mentions: 1
Published: about 5 years ago

10.1097/MD.0000000000018815

Expression of SREBP2 and cholesterol metabolism related genes in TCGA glioma cohorts
Cited by: 6
Author(s): Dali Li, Shenglan Li, Allen Z Xue, Laura A. Smith Callahan, Ying Liu
Software Mentions: 1
Published: over 6 years ago

10.1097/MD.0000000000014074

Identification of key regulators of pancreatic ductal adenocarcinoma using bioinformatics analysis of microarray data
Cited by: 5
Author(s): Nan Li, Xin Zhao, Shengyi You
Software Mentions: 1
Published: almost 8 years ago

10.3390/medicina55090564

Biomarker Potential of Plasma MicroRNA-150-5p in Prostate Cancer
Cited by: 19
Author(s): Ionuț Andrei Păunescu, Răzvan Bardan, Anca Marcu, Diana Nițușcă, Alis Dema, Șerban Negru, Ovidiu Bălăcescu, Loredana Bălăcescu, A. Cumpanas, Ioan Ovidiu Sîrbu, Bogdan Petruţ, Edward Șeclăman, Cătălin Marian
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2019.00304

Integrative Approach to Reveal Cell Type Specificity and Gene Candidates for Psoriatic Arthritis Outside the MHC
Cited by: 6
Author(s): Matthew Patrick, Philip E. Stuart, Kalpana Raja, Sunyi Chi, Zhi He, John J. Voorhees, Trilokraj Tejasvi, Jóhann E. Guðjónsson, J. Michelle Kahlenberg, Vinod Chandran, Proton Rahman, Dafna D. Gladman, Rajan P. Nair, James T. Elder, Lam C. Tsoi
Software Mentions: 1
Published: over 7 years ago

10.1155/2015/737310

Role of Calprotectin as a Modulator of the IL27-Mediated Proinflammatory Effect on Endothelial Cells
Cited by: 12
Author(s): Susann Antonia Dorosz, Aurélien Ginolhac, Thilo Kähne, Michael Naumann, Thomas Sauter, Alexandre Salsmann, Jean-Luc Bueb
Software Mentions: 1
Published: almost 12 years ago

10.1155/2013/437123

Stimulation of MMP-1 and CCL2 by NAMPT in PDL Cells
Cited by: 33
Author(s): Marjan Nokhbehsaim, Sigrun Eick, Andressa Vilas Boas Nogueira, Per Hoffmann, Stefan Herms, Holger Fröhlich, Søren Jepsen, Andreas Jäger, Joni Augusto Cirelli, James Deschner
Software Mentions: 1
Published: almost 14 years ago

10.1016/j.mad.2019.111177

Ageing-associated changes in the expression of lncRNAs in human tissues reflect a transcriptional modulation in ageing pathways
Cited by: 23
Author(s): Saara Marttila, Kasit Chatsirisupachai, Daniel H. Palmer, João Pedro de Magalhães
Software Mentions: 1
Published: almost 7 years ago

10.3390/md19020052

Marine Seagrass Extract of Thalassia testudinum Suppresses Colorectal Tumor Growth, Motility and Angiogenesis by Autophagic Stress and Immunogenic Cell Death Pathways
Cited by: 11
Author(s): Ivones Hernández-Balmaseda, Idania Rodeiro Guerra, Ken Declerck, José Alfredo Herrera Isidrón, Claudina Pérez-Novo, Guy Van Camp, Olivier De Wever, Kethia González, Mayrel Labrada, Adriana Carr, Geovanni Dantas-Cassali, Diego Carlos dos Reis, Liván Delgado-Roche, Roberto Rafael Nuñez, René Delgado Hernández, Miguel D. Fernández, Miriam T. Paz-Lopes, Wim Vanden Berghe
Software Mentions: 1
Published: over 5 years ago

10.1007/s00335-018-9750-y

Of mice and men: the host response to influenza virus infection
Cited by: 16
Author(s): Heike Kollmus, Carolin Pilzner, Sarah R. Leist, Mark T. Heise, Robert Geffers, Klaus Schughart
Software Mentions: 1
Published: over 8 years ago

10.1186/s12936-017-2099-y

Malaria vectors in the Democratic Republic of the Congo: the mechanisms that confer insecticide resistance in Anopheles gambiae and Anopheles funestus
Cited by: 36
Author(s): Luisa Nardini, Richard H. Hunt, Yael Dahan-Moss, Nanette Christie, Riann Christian, Maureen Coetzee, Lizette L. Koekemoer
Software Mentions: 1
Published: almost 9 years ago

10.1186/1476-511X-12-126

The effect of simvastatin on lipid droplets accumulation in human embryonic kidney cells and pancreatic cancer cells
Cited by: 27
Author(s): Helena Gbelcová, Martin Švéda, Lucia Laubertová, Ivan Varga, Libor Vı́tek, Michal Kolář, Hynek Strnad, Jaroslav Zelenka, Daniel Böhmer, Tomáš Ruml
Software Mentions: 1
Published: about 13 years ago

10.1186/s12944-019-1131-3

Potential molecular mechanism of ACE gene at different time points in STEMI patients based on genome-wide microarray dataset
Cited by: 3
Author(s): Yao-Zong Guan, Rui-Xing Yin, Peng-Fei Zheng, Guo-Xiong Deng, Chunxiao Liu, Bi-Liu Wei
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12944-015-0072-8

Eicosapentaenoic and docosahexaenoic acid-enriched high fat diet delays the development of fatty liver in mice
Cited by: 25
Author(s): Nikulkumar Soni, Intawat Nookaew, Ann‐Sofie Sandberg, Britt G. Gabrielsson
Software Mentions: 1
Published: about 11 years ago

10.26508/lsa.201800153

Variants of<i>DNMT3A</i>cause transcript-specific DNA methylation patterns and affect hematopoiesis
Cited by: 16
Author(s): Tanja Božić, Joana Frobel, Annamarija Raić, Fabio Ticconi, Chao-Chung Kuo, Stefanie Heilmann‐Heimbach, Tamme W. Goecke, Martin Zenke, Edgar Jost, Ivan G. Costa, Wolfgang Wagner
Software Mentions: 1
Published: almost 8 years ago

10.26508/lsa.202101034

High levels of TFAM repress mammalian mitochondrial DNA transcription in vivo
Cited by: 29
Author(s): Nina A. Bonekamp, Min Jiang, Elisa Motori, Rodolfo Garcia Villegas, Camilla Koolmeister, Ilian Atanassov, Andrea Mesaros, Chan Bae Park, Nils‐Göran Larsson
Software Mentions: 1
Published: about 5 years ago

10.1186/s12859-016-1140-4

Reference-free deconvolution of DNA methylation data and mediation by cell composition effects
Cited by: 198
Author(s): E. Andrés Houseman, Molly L. Kile, David C. Christiani, Tan A. Ince, Karl T. Kelsey, Carmen J. Marsit
Software Mentions: 1
Published: over 10 years ago

10.3390/life10100248

Novel Methylation Patterns Predict Outcome in Uveal Melanoma
Cited by: 4
Author(s): Sarah Tadhg Ferrier, Julia V. Burnier
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2020.00403

Identification of CircRNA–miRNA–mRNA Regulatory Network in Gastrointestinal Stromal Tumor
Cited by: 10
Author(s): Fangwen Zou, Ding Cao, Yifang Tang, Long Shu, Zhongkun Zuo, Leiyi Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/life11040320

Long Noncoding RNA NEAT1 as a Potential Candidate Biomarker for Prostate Cancer
Cited by: 6
Author(s): Diana Nițușcă, Anca Marcu, Alis Dema, Loredana Bălăcescu, Ovidiu Bălăcescu, Răzvan Bardan, A. Cumpanas, Ioan Ovidiu Sîrbu, Bogdan Petruţ, Edward Șeclăman, Cătălin Marian
Software Mentions: 1
Published: over 5 years ago

10.1038/leu.2013.362

Epimutations mimic genomic mutations of DNMT3A in acute myeloid leukemia
Cited by: 45
Author(s): Edgar Jost, Qiong Lin, Carola I. Weidner, Stefan Wilop, Melanie Hoffmann, Thomas Walenda, Mirle Schemionek, Oliver Herrmann, Martin Zenke, Tim H. Brümmendorf, Steffen Koschmieder, Wolfgang Wagner
Software Mentions: 1
Published: almost 13 years ago

10.1038/leu.2016.187

Citrullination of histone H3 drives IL-6 production by bone marrow mesenchymal stem cells in MGUS and multiple myeloma
Cited by: 37
Author(s): Gavin McNee, Katherine L. Eales, Wenbin Wei, D. R. Williams, Angelique Barkhuizen, David B. Bartlett, Sarah Essex, Seetharam Anandram, Andrew Filer, Paul Moss, Guy Pratt, Supratik Basu, Clare C. Davies, Daniel A. Tennant
Software Mentions: 1
Published: over 10 years ago

10.1155/2020/1230513

Six-Gene Signature Associated with Immune Cells in the Progression of Atherosclerosis Discovered by Comprehensive Bioinformatics Analyses
Cited by: 20
Author(s): Bin Zhao, Dan Wang, Yanling Liu, Xiaohong Zhang, Weiping Zheng, Jinling Wang, Ting Su, Linshan Duan, Yan Wang, Yuehua Zhang, Yilin Zhao
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2019.00884

MUDENG Expression Profiling in Cohorts and Brain Tumor Biospecimens to Evaluate Its Role in Cancer
Cited by: 3
Author(s): Juhyun Shin, Jun-Ha Choi, Seunghwa Jung, So-Mi Jeong, Jeongheon Oh, Do‐Young Yoon, Man Hee Rhee, Junseong Ahn, Se-Hyuk Kim, Jae-Wook Oh
Software Mentions: 1
Published: about 7 years ago

10.1186/gb-2007-8-1-r2

Cited by: 67
Author(s): Alicia Oshlack, Dianne Emslie, Lynn M. Corcoran, Gordon K. Smyth
Software Mentions: 1
Published: almost 20 years ago

10.1155/2020/7658921

Microarray Analysis of Small Extracellular Vesicle-Derived miRNAs Involved in Oxidative Stress of RPE Cells
Cited by: 4
Author(s): Ke Mao, Xiang Wu
Software Mentions: 1
Published: almost 6 years ago

10.1155/2020/1615826

MFGE8, ALB, APOB, APOE, SAA1, A2M, and C3 as Novel Biomarkers for Stress Cardiomyopathy
Cited by: 8
Author(s): Xiaoyu Pan, Zai-Wei Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/nu10050547

A Vitamin E-Enriched Antioxidant Diet Interferes with the Acute Adaptation of the Liver to Physical Exercise in Mice
Cited by: 8
Author(s): Miriam Hoene, Martin Irmler, Johannes Beckers, Martin Hrabé de Angelis, Hans‐Ulrich Häring, Cora Weigert
Software Mentions: 1
Published: over 8 years ago

10.1155/2019/8490707

Identification of Differentially Expressed Genes and Signaling Pathways in Acute Myocardial Infarction Based on Integrated Bioinformatics Analysis
Cited by: 31
Author(s): Da-qiu Chen, Xiuying Kong, Xuwei Shen, Maozhi Huang, J. P. Zheng, Jing Sun, Shuai Xu
Software Mentions: 1
Published: about 7 years ago

10.1186/1475-2840-11-15

Global gene expression profiling displays a network of dysregulated genes in non-atherosclerotic arterial tissue from patients with type 2 diabetes
Cited by: 30
Author(s): Vibe Skov, Steen Knudsen, Malene Olesen, Morten Hartvig Hansen, Lars Melholt Rasmussen
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12933-016-0353-1

Insulin resistance, endothelial function, angiogenic factors and clinical outcome in non-diabetic patients with chest pain without myocardial perfusion defects
Cited by: 19
Author(s): Helena U. Westergren, Sara Svedlund, Remi A. Momo, Juuso Blomster, Karin Wåhlander, Erika Rehnström, Peter J. Greasley, Regina Fritsche‐Danielson, Jan Oscarsson, Li‐Ming Gan
Software Mentions: 1
Published: over 10 years ago

10.1155/2020/6634247

Development and Validation of a Nine-Redox-Related Long Noncoding RNA Signature in Renal Clear Cell Carcinoma
Cited by: 41
Author(s): Qi‐Dong Xia, Xiufen Yang, Junlin Lu, Chen‐Qian Liu, Jian‐Xuan Sun, Cong Liu, Shaogang Wang
Software Mentions: 1
Published: almost 6 years ago

10.1155/2019/8645840

The Expression Profile of MicroRNAs in Small and Large Abdominal Aortic Aneurysms
Cited by: 13
Author(s): Václava Černá, Pavel Ostašov, Pavel Pitule, Jiří Moláček, Vladislav Třeška, Martin Pešta
Software Mentions: 1
Published: almost 7 years ago

10.1155/2021/3925136

Decreased Spp1 Expression in Acute Myocardial Infarction after Ischemia and Reperfusion Injury
Cited by: 4
Author(s): Ling Li, Jianghua Huang, Zongkai Zhao, Zheng Wen, Kang Li, Tiangang Ma, Lisui Zhang, Junmeng Zheng, Shi Liang
Software Mentions: 1
Published: about 5 years ago

10.1002/cam4.1484

Analysis of potential genes and pathways associated with the colorectal normal mucosa-adenoma-carcinoma sequence
Cited by: 27
Author(s): Zhiyuan Wu, Zhen Liu, Weiting Ge, Jiawei Shou, Lixin You, Hongming Pan, Weidong Han
Software Mentions: 1
Published: over 8 years ago

10.1002/cam4.4142

An aberrant DNA methylation signature for predicting the prognosis of head and neck squamous cell carcinoma
Cited by: 2
Author(s): Dayang Chen, Mengmeng Wang, Ying Guo, Wei Wu, Xiang Ji, Xiaowei Dou, Huamei Tang, Zhi‐Hong Zong, Xiuming Zhang, Dan Xiong
Software Mentions: 1
Published: about 5 years ago

10.1002/cam4.3183

miR‐18a activates Wnt pathway in ER‐positive breast cancer and is associated with poor prognosis
Cited by: 18
Author(s): Madhumathy G. Nair, Jyothi S Prabhu, Aruna Korlimarla, Savitha Rajarajan, Parameswaran Hari, Roma Kaul, A. Alexander, Rohini Raghavan, B S Srinath, T.S. Sridhar
Software Mentions: 1
Published: over 6 years ago

10.1002/cam4.2171

An integrated analysis reveals the oncogenic function of lncRNA LINC00511 in human ovarian cancer
Cited by: 22
Author(s): Jing Wang, Yongju Tian, Hui Zheng, Yan Ding, Xiuli Wang
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2021.695036

S100 Calcium Binding Protein A10, A Novel Oncogene, Promotes the Proliferation, Invasion, and Migration of Hepatocellular Carcinoma
Cited by: 8
Author(s): Xing Zhou, Min Shi, Jun Cao, Tianwen Yuan, Guanzhen Yu, Ying Chen, Wenzhen Fang, Hongwei Li
Software Mentions: 1
Published: over 5 years ago

10.1002/cam4.1180

A comprehensive genome-wide analysis of long noncoding RNA expression profile in hepatocellular carcinoma
Cited by: 81
Author(s): Hongxia Cui, Yunxing Zhang, Qiu‐Jie Zhang, Wen-Ming Chen, Haibo Zhao, Jun Liang
Software Mentions: 1
Published: almost 9 years ago

10.1002/cam4.4033

Regional and racial disparity in proximal gastric cancer survival outcomes 1996–2016: Results from SEER and China National Cancer Center database
Cited by: 10
Author(s): Lulu Zhao, Penghui Niu, Dongbing Zhao, Yingtai Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.656759

Circ_0040039 May Aggravate Intervertebral Disk Degeneration by Regulating the MiR-874-3p-ESR1 Pathway
Cited by: 11
Author(s): Yongjin Li, Xuke Wang, Haiwei Xu, Guowang Li, Zhenxin Huo, Lilong Du, Kaihui Zhang, Ли Шен, Hao Li, Bei Xu
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.567200

Impact of Long Non-coding RNAs Associated With Microenvironment on Survival for Bladder Cancer Patients
Cited by: 7
Author(s): Gaoteng Lin, Baoyin Guo, Yulei Wei, Tianjie Lan, Simeng Wen, Gang Li
Software Mentions: 1
Published: almost 6 years ago

10.1002/cam4.1710

Overexpression of KIF20A confers malignant phenotype of lung adenocarcinoma by promoting cell proliferation and inhibiting apoptosis
Cited by: 52
Author(s): Xia Zhao, Leilei Zhou, Xiaoyou Li, Jie Ni, Ping Chen, Rong Ma, Jianzhong Wu, Jifeng Feng
Software Mentions: 1
Published: about 8 years ago

10.18632/aging.103107

Identification and validation of the angiogenic genes for constructing diagnostic, prognostic, and recurrence models for hepatocellular carcinoma
Cited by: 9
Author(s): Jinyu Zhu, Bufu Tang, Jie Li, Yueli Shi, Minjiang Chen, Xiuling Lv, Miaomiao Meng, Qiaoyou Weng, Nannan Zhang, Kai Fan, Min Xu, Jiansong Ji
Software Mentions: 1
Published: over 6 years ago

10.1002/cam4.2492

Risk stratification for lung adenocarcinoma on EGFR and TP53 mutation status, chemotherapy, and PD‐L1 immunotherapy
Cited by: 8
Author(s): Chih‐Hsun Wu, Ming‐Jing Hwang
Software Mentions: 1
Published: about 7 years ago

10.1002/cam4.190

Bronchial airway gene expression in smokers with lung or head and neck cancer
Cited by: 12
Author(s): Eric Van Dyck, Petr V. Nazarov, Arnaud Muller, Nathalie Nicot, Manon Bosseler, Sandrine Pierson, Kris Van Moer, Valérie Palissot, Céline Mascaux, U. Knolle, Vincent Ninane, Romain Nati, Roy M. Bremnes, Laurent Vallar, Guy Berchem, Marc Schlesser
Software Mentions: 1
Published: over 12 years ago

10.1002/cam4.2433

The establishment of immune infiltration based novel recurrence predicting nomogram in prostate cancer
Cited by: 35
Author(s): Jialin Meng, Yi Liu, Shi-Yang Guan, Song Fan, Jun Zhou, Meng Zhang, Chaozhao Liang
Software Mentions: 1
Published: about 7 years ago

10.1177/1073274819831260

Identification of Potential Key Genes and Pathways in Early-Onset Colorectal Cancer Through Bioinformatics Analysis
Cited by: 39
Author(s): Bin Zhao, Zulqarnain Baloch, Yunhan Ma, Weiping Zheng, Yani Huo, Fujun Li, Yilin Zhao
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12935-021-01821-2

Identification the ferroptosis-related gene signature in patients with esophageal adenocarcinoma
Cited by: 58
Author(s): Lei Zhu, Fugui Yang, Lingwei Wang, Dong Lin, Zhiyuan Huang, Guangxue Wang, Guohan Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-020-01651-8

Hsa_circ_0004831 serves as a blood-based prognostic biomarker for colorectal cancer and its potentially circRNA-miRNA-mRNA regulatory network construction
Cited by: 13
Author(s): Linlin Xing, Mengyan Xia, Xin Jiao, Ling Fan
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-020-01302-y

Serum-derived three-circRNA signature as a diagnostic biomarker for hepatocellular carcinoma
Cited by: 44
Author(s): Xianghong Sun, Yu-Tong Wang, Guofu Li, Nan Zhang, Ling Fan
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-018-2428-3

TNER: a novel background error suppression method for mutation detection in circulating tumor DNA
Cited by: 12
Author(s): Shibing Deng, Maruja Lira, Donghui Huang, Kai Wang, Crystal E. Valdez, Jennifer Kinong, Paul A. Rejto, Jadwiga Bienkowska, James S. Hardwick, Tongxin Xie
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12935-020-01725-7

miR-636 inhibits EMT, cell proliferation and cell cycle of ovarian cancer by directly targeting transcription factor Gli2 involved in Hedgehog pathway
Cited by: 11
Author(s): Jiong Ma, Chunxia Zhou, Xuejun Chen
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.203300

LncRNA CCAT1 promotes prostate cancer cells proliferation, migration, and invasion through regulation of miR-490-3p/FRAT1 axis
Cited by: 9
Author(s): Xiaowei Cai, Yiheng Dai, Peng Gao, Guanyu Ren, Dingcai Cheng, Bo Wang, Yi Wang, Jian Yu, Yueyao Du, Xizhi Wang, Boxin Xue
Software Mentions: 1
Published: about 5 years ago

10.1186/s12935-020-01566-4

Glioma exosomal microRNA-148a-3p promotes tumor angiogenesis through activating the EGFR/MAPK signaling pathway via inhibiting ERRFI1
Cited by: 24
Author(s): Meng Wang, Yi Zhao, Zhiyun Yu, Ren-De Zhang, Shuang Li, Peng Zhang, Ti-Kun Shan, Xueyou Liu, Zeming Wang, Peichao Zhao, Hongwei Sun
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-020-01633-w

Integrative in silico and in vitro transcriptomics analysis revealed new lncRNAs related to intrinsic apoptotic genes in colorectal cancer
Cited by: 9
Author(s): Fatemeh Akbari, Maryam Peymani, Ali Salehzadeh, Kamran Ghaedi
Software Mentions: 1
Published: almost 6 years ago