bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1038/s41385-019-0176-y

The IL-33/ST2 pathway shapes the regulatory T cell phenotype to promote intestinal cancer
Cited by: 101
Author(s): Eva Pastille, Marie-Hélène Wasmer, Alexandra Adamczyk, Vivian Vu, Lukas F. Mager, Nhi Ngo Thi Phuong, Vittoria Palmieri, Cédric Simillion, Wiebke Hansen, Stefan Kasper, Martin Schüler, Beat Muggli, Kathy D. McCoy, Jan Buer, Inti Zlobec, Astrid M. Westendorf, Philippe Krebs
Software Mentions: 1
Published: over 5 years ago

10.1016/j.omto.2021.03.016

MicroRNA-499 serves as a sensitizer for lung cancer cells to radiotherapy by inhibition of CK2α-mediated phosphorylation of p65
Cited by: 2
Author(s): Yu‐Shui Ma, Bowen Shi, Haimin Lu, Pengfei Xie, Rui Xin, Zhijun Wu, Yi Shi, Yuzhen Yin, Likun Hou, Chengyou Jia, Wei Wu, Zhongwei Lv, Fei Yu, Wang Gaoren, Ji‐Bin Liu, Gengxi Jiang
Software Mentions: 1
Published: over 3 years ago

10.1016/j.omto.2020.03.021

Analysis of Lung Adenocarcinoma Subtypes Based on Immune Signatures Identifies Clinical Implications for Cancer Therapy
Cited by: 43
Author(s): Feng Xu, Jiexin Chen, Xianghong Yang, Xin-Bin Hong, Zixiong Li, Ling Lin, Yongsong Chen
Software Mentions: 1
Published: over 4 years ago

10.1016/j.omto.2020.12.010

The long non-coding RNA SNHG4/microRNA-let-7e/KDM3A/p21 pathway is involved in the development of non-small cell lung cancer
Cited by: 15
Author(s): Fan Wang, Qingqing Quan
Software Mentions: 1
Published: over 3 years ago

10.1016/j.omtn.2020.01.019

Discovering Cancer-Related miRNAs from miRNA-Target Interactions by Support Vector Machines
Cited by: 7
Author(s): Cong Pian, Shanjun Mao, Guangle Zhang, Jin Du, Fēi Li, Suet Yi Leung, Xiaodan Fan
Software Mentions: 1
Published: over 4 years ago

10.1016/j.omtn.2019.12.029

RETRACTED: The Potential Therapeutic Role of Exosomal MicroRNA-520b Derived from Normal Fibroblasts in Pancreatic Cancer
Cited by: 16
Author(s): Huijuan Shi, Hui Li, Tiantian Zhen, Yu Dong, Xiaojuan Pei, Xiangliang Zhang
Software Mentions: 1
Published: over 4 years ago

10.1016/j.omtn.2018.07.018

A Transcriptome-Level Study Identifies Changing Expression Profiles for Ossification of the Ligamentum Flavum of the Spine
Cited by: 21
Author(s): Yan Han, Yuheng Hong, Liandong Li, Tengshuai Li, Zhen Zhang, Jingzhao Wang, Xia Han, Yutao Tang, Zhemin Shi, Xiaohui Han, Ting Chen, Qi Liu, Mengxia Zhang, Kun Zhang, Hong Wang, Yuan Xue
Software Mentions: 1
Published: about 6 years ago

10.1016/j.omtn.2019.02.022

RETRACTED: Bone Marrow Mesenchymal Stem Cell-Derived Exosomal MicroRNA-126-3p Inhibits Pancreatic Cancer Development by Targeting ADAM9
Cited by: 90
Author(s): Dongmei Wu, Xin Wen, Xin‐Rui Han, Shan Wang, Yongjian Wang, Min Shen, Shao‐Hua Fan, Zi-Feng Zhang, Qun Shan, Meng‐Qiu Li, Bin Hu, Jun Lü, Guiquan Chen, Yuxin Zheng
Software Mentions: 1
Published: over 5 years ago

10.1016/j.omtn.2020.08.020

GC-Derived EVs Enriched with MicroRNA-675-3p Contribute to the MAPK/PD-L1-Mediated Tumor Immune Escape by Targeting CXXC4
Cited by: 23
Author(s): Ping Li, Xingdong Luo, Yue Xie, Pengfei Li, Fangyong Hu, Junfeng Chu, Xiaojun Chen, Wenbo Song, Ali Wang, Xiang Gu
Software Mentions: 1
Published: almost 4 years ago

10.3389/fonc.2020.571524

Identification of Key Gene Signatures Associated With Bone Metastasis in Castration-Resistant Prostate Cancer Using Co-Expression Analysis
Cited by: 5
Author(s): Zhongxiang Yu, Hanlin Zou, Huihao Wang, Qi Li, Dong Yu
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-213X-12-4

Fine scale analysis of gene expression in Drosophila melanogaster gonads reveals Programmed cell death 4 promotes the differentiation of female germline stem cells
Cited by: 16
Author(s): Amy Cash, Justen Andrews
Software Mentions: 1
Published: almost 13 years ago

10.3389/fonc.2020.01031

Identification of Aberrantly Methylated Differentially CpG Sites in Hepatocellular Carcinoma and Their Association With Patient Survival
Cited by: 2
Author(s): Renguo Guan, Weimin Guo, Wang Hong, Ye Lin, Xiongfeng Zou, Ning Shi, Dongyang Yang, Yu Zhou, Zhixiang Jian, Haosheng Jin, Weidong Lin, Min Yu
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2020.585452

Mechanism and Molecular Network of RBM8A-Mediated Regulation of Oxaliplatin Resistance in Hepatocellular Carcinoma
Cited by: 9
Author(s): Rong Liang, Jinyan Zhang, Zhihui Liu, Ziyu Liu, Qian Li, Xi Luo, Yongqiang Li, Jiazhou Ye, Yan Lin
Software Mentions: 1
Published: almost 4 years ago

10.15252/msb.20145486

Drugs that reverse disease transcriptomic signatures are more effective in a mouse model of dyslipidemia
Cited by: 41
Author(s): Allon Wagner, Noa Cohen, Thomas Kelder, Uri Amit, Elad Liebman, David M. Steinberg, Marijana Radonjić, Eytan Ruppin
Software Mentions: 1
Published: over 9 years ago

10.15252/msb.20209628

In vitro and in vivo identification of clinically approved drugs that modify <scp>ACE</scp> 2 expression
Cited by: 42
Author(s): Sanju Sinha, Kuoyuan Cheng, Alejandro A. Schäffer, Kenneth Aldape, Eyal Schiff, Eytan Ruppin
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.12527

IKKα regulates the stratification and differentiation of the epidermis: implications for skin cancer development
Cited by: 12
Author(s): Josefa P. Alameda, Manuel Navarro, Ángel Ramı́rez, Angustias Page, Cristian Suárez-Cabrera, Rodolfo Moreno-Maldonado, Jesús M. Paramio, María del Carmen Fariña, Marcela Del Río, María Jesús Fernández-Aceñero, Ana Bravo, Mercedes Casanova
Software Mentions: 1
Published: about 8 years ago

10.1186/s12906-019-2577-6

Qianggan extract improved nonalcoholic steatohepatitis by modulating lncRNA/circRNA immune ceRNA networks
Cited by: 18
Author(s): Meizhen Zhu, Meng Li, Wenjun Zhou, Yang Yang, Fenghua Li, Li Zhang, Guang Ji
Software Mentions: 1
Published: over 5 years ago

10.15252/msb.20145625

Ultrasensitive proteome analysis using paramagnetic bead technology
Cited by: 746
Author(s): Christopher S. Hughes, Sophia Föehr, David Garfield, Eileen E. M. Furlong, Lars M. Steinmetz, Jeroen Krijgsveld
Software Mentions: 1
Published: about 10 years ago

10.1038/s41380-018-0043-3

Violent aggression predicted by multiple pre-adult environmental hits
Cited by: 20
Author(s): Marina Mitjans, Jan Seidel, Martin Begemann, Fabian Bockhop, Jorge Moya-Higueras, V. Bansal, Janina Wesolowski, Anna Seelbach, Manuel I. Ibáñez, Fatka Kovacevic, Oguzhan Duvar, Lourdes Fañanás, Hannah-Ulrike Wolf, Generós Ortet, Peter Zwanzger, Verena Klein, Ina Lange, A. Tänzer, Manuela Dudeck, Lars Penke, Ludger Tebartz van Elst, Robert A. Bittner, Richard Schmidmeier, Roland Freese, Rüdiger Müller-Isberner, Jens Wiltfang, Thomas Bliesener, Stefan Bonn, Luise Poustka, Jürgen Müller, Bárbara Arias, Hannelore Ehrenreich
Software Mentions: 1
Published: over 6 years ago

10.1186/s12906-017-1586-6

Exploration of anti-cancer effects and mechanisms of Zuo-Jin-Wan and its alkaloid components in vitro and in orthotopic HepG2 xenograft immunocompetent mice
Cited by: 32
Author(s): Shun Ting Chou, Chien Yun Hsiang, Hsin Yi Lo, Hui Huang, Ming Tsung Lai, Ching Liang Hsieh, Su‐Yin Chiang, Tin Yun Ho
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41380-018-0086-5

Gut microbiota modulate neurobehavior through changes in brain insulin sensitivity and metabolism
Cited by: 153
Author(s): Marion Soto, Clémence Herzog, Julian Avila Pacheco, Shiho Fujisaka, Kevin Bullock, Clary B. Clish, C. Ronald Kahn
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2021.699847

Gimap5 Inhibits Lung Cancer Growth by Interacting With M6PR
Cited by: 4
Author(s): Pei Dai, Zhongxiang Tang, Pinglang Ruan, Ousman Bajinka, Dan Liu, Yurong Tan
Software Mentions: 1
Published: about 3 years ago

10.1038/s41380-018-0258-3

Integrative approach to sporadic Alzheimer’s disease: deficiency of TYROBP in a tauopathy mouse model reduces C1q and normalizes clinical phenotype while increasing spread and state of phosphorylation of tau
Cited by: 43
Author(s): Mickaël Audrain, Jean‐Vianney Haure‐Mirande, Minghui Wang, Soong Ho Kim, Tomas Fanutza, Paramita Chakrabarty, Paul E. Fraser, Peter St George-Hyslop, Todd E. Golde, Robert D. Blitzer, Eric E. Schadt, Bin Zhang, Michelle E. Ehrlich, Sam Gandy
Software Mentions: 1
Published: about 6 years ago

10.3389/fonc.2020.606928

Autophagy Gene Panel-Based Prognostic Model in Myelodysplastic Syndrome
Cited by: 2
Author(s): Ming-Jing Wang, Weiyi Liu, Xueying Wang, Yumeng Li, Haiyan Xiao, Richeng Quan, Gang Huang, Xiaomei Hu
Software Mentions: 1
Published: almost 4 years ago

10.1111/mpp.12564

A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection
Cited by: 56
Author(s): Neil Andrew Brown, J. Evans, Andrew Mead, K. E. Hammond‐Kosack
Software Mentions: 1
Published: over 7 years ago

10.1002/1878-0261.12444

Obesity‐induced <scp>MBD</scp> 2_v2 expression promotes tumor‐initiating triple‐negative breast cancer stem cells
Cited by: 23
Author(s): Emily A. Teslow, Cristina Mitrea, Bin Bao, Ramzi M. Mohammad, Lisa Polin, Greg Dyson, Kristen Purrington, Aliccia Bollig‐Fischer
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.00208

Malignant Evaluation and Clinical Prognostic Values of m6A RNA Methylation Regulators in Glioblastoma
Cited by: 35
Author(s): Jianyang Du, Kezuo Hou, Shan Mi, Hang Ji, Shuai Ma, Yixu Ba, Shaoshan Hu, Rui Xie, Lei Chen
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2021.744251

Chronic Stress-Induced Gene Changes In Vitro and In Vivo: Potential Biomarkers Associated With Depression and Cancer Based on circRNA- and lncRNA-Associated ceRNA Networks
Cited by: 5
Author(s): Ting Zhou, Mingming Li, Zhijun Xiao, Jian Cai, Weiwei Zhao, Jingjing Duan, Zhen Yang, Zhijun Guo, Yitian Chen, Weijia Cai, Piaopiao Huang, Chaoyong He, Feng Xu
Software Mentions: 1
Published: about 3 years ago

10.1002/1878-0261.12711

Retracted: Long non‐coding RNA PGM5‐AS1 promotes epithelial‐mesenchymal transition, invasion and metastasis of osteosarcoma cells by impairing miR‐140‐5p‐mediated FBN1 inhibition
Cited by: 25
Author(s): Wei Liu, Pengcheng Liu, Hang Gao, Xu Wang, Mingxia Yan
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2021.659208

Low Expression Levels of SLC22A12 Indicates a Poor Prognosis and Progresses Clear Cell Renal Cell Carcinoma
Cited by: 4
Author(s): Jiaju Xu, Yuenan Liu, Jingchong Liu, Yanhong Shou, Xiong Zhang, Hairong Xiong, Tianbo Xu, Qi Wang, Di Liu, Huageng Liang, Hongmei Yang, Xiong Yang, Xiaoping Zhang
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2020.00639

Long Non-coding RNA TDRKH-AS1 Promotes Colorectal Cancer Cell Proliferation and Invasion Through the β-Catenin Activated Wnt Signaling Pathway
Cited by: 10
Author(s): Jiao Yang, Jialiang Zhou, Yecheng Jin, Yingxin Yang, Mingxu Song, Ling Zhang, Jiayan Zhou, Jiwei Zhang
Software Mentions: 1
Published: over 4 years ago

10.1002/1878-0261.12834

A novel prognostic model based on four circulating miRNA in diffuse large B‐cell lymphoma: implications for the roles of MDSC and Th17 cells in lymphoma progression
Cited by: 20
Author(s): Rui Sun, Zhong Zheng, Li Wang, Shu Cheng, Qingqing Shi, Bin Qu, Di Fu, Christophe Lebœuf, Yan Zhao, Jing Ye, Anne Janin, Wei‐Li Zhao
Software Mentions: 1
Published: about 4 years ago

10.1002/1878-0261.12639

Metabolism‐associated molecular classification of hepatocellular carcinoma
Cited by: 115
Author(s): Chen Yang, Xiaowen Huang, Zhicheng Liu, Wenxin Qin, Cun Wang
Software Mentions: 1
Published: almost 5 years ago

10.1002/1878-0261.12738

Blood‐derived DNA methylation predictors of mortality discriminate tumor and healthy tissue in multiple organs
Cited by: 6
Author(s): Yan Zhang, Melanie Bewerunge-Hudler, Matthias Schick, Barbara Burwinkel, Esther Herpel, Michael Hoffmeister, Hermann Brenner
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2020.00003

Effect of m6A RNA Methylation Regulators on Malignant Progression and Prognosis in Renal Clear Cell Carcinoma
Cited by: 42
Author(s): Jiawu Wang, Chengyao Zhang, Weiyang He, Xin Gou
Software Mentions: 1
Published: almost 5 years ago

10.1002/1878-0261.12424

Circular <scp>RNA</scp> profiling identifies circ <scp>ADAMTS</scp> 13 as a miR‐484 sponge which suppresses cell proliferation in hepatocellular carcinoma
Cited by: 83
Author(s): Liman Qiu, Yong Huang, Zhenli Li, Xiaoli Dong, Chen Geng, Haipo Xu, Yongyi Zeng, Zhixiong Cai, Xiaolong Liu, Jingfeng Liu
Software Mentions: 1
Published: almost 6 years ago

10.1002/1878-0261.12668

Improved prognostication of glioblastoma beyond molecular subtyping by transcriptional profiling of the tumor microenvironment
Cited by: 15
Author(s): M. Jeanmougin, Annette Bentsen Håvik, Lina Cekaite, Petter Brandal, Anita Sveen, Torstein R. Meling, Trude H. Ågesen, David Scheie, Sverre Heim, Ragnhild Lothe, Guro Elisabeth Lind
Software Mentions: 1
Published: over 4 years ago

10.1002/1878-0261.12640

CCL5 mediates target‐kinase independent resistance to FLT3 inhibitors in FLT3‐ITD‐positive AML
Cited by: 14
Author(s): Silvia Waldeck, Michael Rassner, Philip Keye, Marie Follo, Dieter Herchenbach, Cornelia Endres, Anne Charlet, Geoffroy Andrieux, Ulrich Salzer, Melanie Boerries, Justus Duyster, Nikolas von Bubnoff
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12906-016-1349-9

Identification of more objective biomarkers for Blood-Stasis syndrome diagnosis
Cited by: 21
Author(s): Jingqiu Liao, Yongmei Liu, Jie Wang
Software Mentions: 1
Published: about 8 years ago

10.3389/fonc.2018.00218

Anti-Leukemic Properties of Histamine in Monocytic Leukemia: The Role of NOX2
Cited by: 21
Author(s): Roberta Kiffin, Hanna Grauers Wiktorin, Madeleine Nilsson, Johan Aurelius, Ebru Aydin, Brianna Lenox, Jonas A. Nilsson, Anders Ståhlberg, Fredrik B. Thorén, Kristoffer Hellstrand, Anna Martner
Software Mentions: 1
Published: over 6 years ago

10.1186/s12906-017-1911-0

Comprehensive evaluation of gene expression signatures in response to electroacupuncture stimulation at Zusanli (ST36) acupoint by transcriptomic analysis
Cited by: 2
Author(s): Jing-Shan Wu, Hsin-Yi Lo, Chia-Cheng Li, Fengyuan Chen, Chien-Yun Hsiang, Tin-Yun Ho
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2021.671341

An Immune-Related lncRNA Expression Profile to Improve Prognosis Prediction for Lung Adenocarcinoma: From Bioinformatics to Clinical Word
Cited by: 10
Author(s): Boxiang Zhang, Rui Wang, Kai Li, Zi-Yang Peng, Dapeng Liu, Yunfeng Zhang, Liuzhi Zhou
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.720302

Validating HMMR Expression and Its Prognostic Significance in Lung Adenocarcinoma Based on Data Mining and Bioinformatics Methods
Cited by: 9
Author(s): Xia Li, Haiwei Zuo, Li Zhang, Qian Sun, Yong Xin, Longzhen Zhang
Software Mentions: 1
Published: about 3 years ago

10.3389/fonc.2020.00107

miR-20a-5p/TGFBR2 Axis Affects Pro-inflammatory Macrophages and Aggravates Liver Fibrosis
Cited by: 31
Author(s): Xiu‐Tao Fu, Jingbo Qie, Qingchun Fu, Jiafeng Chen, Yinpeng Jin, Zhen–Bin Ding
Software Mentions: 1
Published: almost 5 years ago

10.1186/1750-1326-9-26

Gene expression changes consistent with neuroAIDS and impaired working memory in HIV-1 transgenic rats
Cited by: 55
Author(s): Vez Repunte‐Canonigo, Céline Lefèbvre, Olivier George, Tatsuyuki Kawamura, Marisela Morales, George F. Koob, Andrea Califano, Eliezer Masliah, Pietro Paolo Sanna
Software Mentions: 1
Published: over 10 years ago

10.3389/fonc.2020.566365

Downregulation of miR-146b-3p Inhibits Proliferation and Migration and Modulates the Expression and Location of Sodium/Iodide Symporter in Dedifferentiated Thyroid Cancer by Potentially Targeting MUC20
Cited by: 13
Author(s): Shasha Hou, Xiaorui Xie, Jing Zhao, Cailan Wu, Ning Li, Zhaowei Meng, Chunquan Cai, Jian Tan
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12885-018-4633-x

Interleukin 8 is a biomarker of telomerase inhibition in cancer cells
Cited by: 3
Author(s): Peter D. Solomon, Yujuan Dong, Shaillay Kumar Dogra, Romi Gupta
Software Mentions: 1
Published: over 6 years ago

10.1186/s12872-021-02011-8

SCD leads to the development and progression of acute myocardial infarction through the AMPK signaling pathway
Cited by: 3
Author(s): Lijie Wang, Feng Yu
Software Mentions: 1
Published: over 3 years ago

10.1186/1750-1326-8-47

Behavioral and transcriptome alterations in male and female mice with postnatal deletion of TrkB in dorsal striatal medium spiny neurons
Cited by: 11
Author(s): Ellen M. Unterwald, Michelle E. Page, Timothy Brown, Jonathan S. Miller, Marta Ruiz, Karen A. Pescatore, Baoji Xu, Louis F. Reichardt, Joel A. Beverley, Bin Tang, Heinz Steiner, Elizabeth A. Thomas, Michelle E. Ehrlich
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12872-020-01701-z

Investigation of the underlying genes and mechanism of familial hypercholesterolemia through bioinformatics analysis
Cited by: 7
Author(s): Dinghui Wang, Bin Liu, Tianhua Xiong, Wenlong Yu, Sheng Qiang
Software Mentions: 1
Published: about 4 years ago

10.3389/fonc.2021.681777

Bioinformatics Analysis and Functional Verification of ADAMTS9-AS1/AS2 in Lung Adenocarcinoma
Cited by: 4
Author(s): Wei Liu, Wei Luo, Peijie Zhou, Yong Cheng, Liting Qian
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2020.00363

The Interaction Between lncRNA SNHG6 and hnRNPA1 Contributes to the Growth of Colorectal Cancer by Enhancing Aerobic Glycolysis Through the Regulation of Alternative Splicing of PKM
Cited by: 54
Author(s): Zhixian Lan, Xiang Yao, Kangyue Sun, Aimin Li, Side Liu, Xinke Wang
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.14836

Multiple functional SNPs in differentially expressed genes modify risk and survival of non-small cell lung cancer in chinese female non-smokers
Cited by: 14
Author(s): Xue Fang, Zhihua Yin, Xuelian Li, Lingzi Xia, Xiaowei Quan, Yang Zhao, Baosen Zhou
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13024-018-0259-3

Large-scale transcriptomic analysis reveals that pridopidine reverses aberrant gene expression and activates neuroprotective pathways in the YAC128 HD mouse
Cited by: 25
Author(s): Rebecca Kusko, Jennifer Dreymann, Jeffrey Ross, Yoon Jin, Renan Escalante-Chong, Marta Garcia-Miralles, Liang Juin Tan, Michael E. Burczynski, Ben Zeskind, Daphna Laifenfeld, Mahmoud A. Pouladi, Michal Geva, Iris Grossman, Michael R. Hayden
Software Mentions: 1
Published: over 6 years ago

10.1186/s13024-021-00441-8

Preclinical modeling of chronic inhibition of the Parkinson’s disease associated kinase LRRK2 reveals altered function of the endolysosomal system in vivo
Cited by: 25
Author(s): Jillian H. Kluss, Melissa Conti Mazza, Yan Li, Claudia Manzoni, Patrick A. Lewis, Mark Cookson, Adamantios Mamais
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.647273

Development of a Prognostic Model for Ovarian Cancer Patients Based on Novel Immune Microenvironment Related Genes
Cited by: 8
Author(s): Wei Wang, Qianqian Wu, Ziheng Wang, Shengxiang Ren, Hanyu Shen, Wenyu Shi, Yunzhao Xu
Software Mentions: 1
Published: over 3 years ago

10.1186/1750-1326-4-49

Vascular endothelial growth factor B (VEGF-B) is up-regulated and exogenous VEGF-B is neuroprotective in a culture model of Parkinson's disease
Cited by: 56
Author(s): Torsten Falk, Shiling Zhang, Scott J. Sherman
Software Mentions: 1
Published: almost 16 years ago

10.1007/s12035-019-1627-x

Circular RNAs as Potential Blood Biomarkers in Amyotrophic Lateral Sclerosis
Cited by: 40
Author(s): Ana Dolinar, Blaž Koritnik, Damjan Glavač, Metka Ravnik‐Glavač
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2019.00710

Sperm Protein Antigen 17 Expression Correlates With Lymph Node Metastasis and Worse Overall Survival in Patients With Breast Cancer
Cited by: 6
Author(s): Yuting Zhou, Juanjuan Qiu, Yao Wang, Pengcheng Liu, Qing Lv, Zhenggui Du
Software Mentions: 1
Published: over 5 years ago

10.1007/s12035-016-0334-0

Humoral Immunity Profiling of Subjects with Myalgic Encephalomyelitis Using a Random Peptide Microarray Differentiates Cases from Controls with High Specificity and Sensitivity
Cited by: 17
Author(s): Sahajpreet Singh, Phillip Stafford, Karen Schlauch, Richard R. Tillett, Martin Gollery, Stephen Albert Johnston, Svetlana F. Khaiboullina, Kenny L. De Meirleir, Shanti Rawat, Tatjana Mijatovic, Krishnamurthy Subramanian, András Palotás, Vincent Lombardi
Software Mentions: 1
Published: almost 8 years ago

10.1007/s12035-020-02189-6

Constitutive PGC-1α Overexpression in Skeletal Muscle Does Not Contribute to Exercise-Induced Neurogenesis
Cited by: 7
Author(s): Lars Karlsson, María Nazareth González-Alvarado, Reza Motalleb, Yafeng Wang, Yong Wang, Mats Börjesson, Changlian Zhu, H. Georg Kuhn
Software Mentions: 1
Published: about 4 years ago

10.1111/j.1365-2958.2012.08192.x

Identification of a complex genetic network underlying <scp>S</scp>accharomyces cerevisiae colony morphology
Cited by: 60
Author(s): Karin Voordeckers, Dries De Maeyer, Elisa van der Zande, Marcelo D. Vinces, Wim Meert, Lore Cloots, Owen Ryan, Kathleen Marchal, Kevin J. Verstrepen
Software Mentions: 1
Published: about 12 years ago

10.1111/mmi.13460

Phytohormone sensing in the biotrophic fungusUstilago maydis– the dual role of the transcription factor Rss1
Cited by: 14
Author(s): Franziska Rabe, Denise Seitner, Lisa Bauer, Fernando Navarrete, Angelika Czedik‐Eysenberg, Fernando A. Rabanal, Armin Djamei
Software Mentions: 1
Published: over 8 years ago

10.1016/j.molmet.2020.100997

Hepatic expression of lipopolysaccharide-binding protein (Lbp) is induced by the gut microbiota through Myd88 and impairs glucose tolerance in mice independent of obesity
Cited by: 10
Author(s): Antonio Molinaro, Ara Koh, Hao Wu, Marc Schoeler, Maria Ilaria Faggi, Alba Carreras, Anna Hallén, Fredrik Bäckhed, Robert Caesar
Software Mentions: 1
Published: over 4 years ago

10.3892/mmr.2015.3565

Identification of therapeutic targets for breast cancer using biological informatics methods
Cited by: 13
Author(s): Xuejian Liu, Yue Ma, Wenchuan Yang, Xia Wu, Lihua Jiang, Xiangli Chen
Software Mentions: 1
Published: over 9 years ago

10.3390/genes7120124

microRNA Expression in Sentinel Nodes from Progressing Melanoma Patients Identifies Networks Associated with Dysfunctional Immune Response
Cited by: 8
Author(s): Viviana Vallacchi, Chiara Camisaschi, Matteo Dugo, Elisabetta Vergani, Paola Deho, Ambra Vittoria Gualeni, Veronica Huber, Annunziata Gloghini, Andrea Maurichi, Mario Santinami, Marialuisa Sensi, Chiara Castelli, Licia Rivoltini, Monica Rodolfo
Software Mentions: 1
Published: almost 8 years ago

10.3390/genes8010044

Tissue Non-Specific Genes and Pathways Associated with Diabetes: An Expression Meta-Analysis
Cited by: 9
Author(s): Hao Mei, Lianna Li, Shijian Liu, Fan Jiang, Michael Griswold, Thomas H. Mosley
Software Mentions: 1
Published: almost 8 years ago

10.3390/genes8030086

Systematic Identification and Assessment of Therapeutic Targets for Breast Cancer Based on Genome-Wide RNA Interference Transcriptomes
Cited by: 9
Author(s): Yang Liu, Xiaoyao Yin, Jing Zhong, Naiyang Guan, Zhigang Luo, Min Lü, Xing Yao, Xiaochen Bo, Licheng Dai, Hui Bai
Software Mentions: 1
Published: over 7 years ago

10.3390/genes9070350

Ensemble Consensus-Guided Unsupervised Feature Selection to Identify Huntington’s Disease-Associated Genes
Cited by: 6
Author(s): Xia Guo, Xue Jiang, Jing Xu, Xiongwen Quan, Min Wu, Han Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/genes9080380

A Herpes Simplex Virus Thymidine Kinase-Induced Mouse Model of Hepatocellular Carcinoma Associated with Up-Regulated Immune-Inflammatory-Related Signals
Cited by: 4
Author(s): Zhijuan Gong, Qiang Ma, Xujun Wang, Qing Cai, Xiaohua Gong, Georgi Z. Genchev, Hui Lu, Fanyi Zeng
Software Mentions: 1
Published: over 6 years ago

10.3390/genes9120588

Systems Analysis of Transcriptomic and Proteomic Profiles Identifies Novel Regulation of Fibrotic Programs by miRNAs in Pulmonary Fibrosis Fibroblasts
Cited by: 24
Author(s): Steven Mullenbrock, Fei Liu, Suzanne Szak, Xiaoping Hronowski, Benbo Gao, Péter Juhász, Chao Sun, Mei Liu, Helen McLaughlin, Qingqing Xiao, Carol Feghali‐Bostwick, Timothy S. Zheng
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes10010045

Network Analyses of Integrated Differentially Expressed Genes in Papillary Thyroid Carcinoma to Identify Characteristic Genes
Cited by: 9
Author(s): Junliang Shang, Dali Qian, Shasha Yuan, Jin-Xing Liu, Feng Li, Honghai Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3892/mmr.2015.3701

Gene expression profiling via bioinformatics analysis reveals biomarkers in laryngeal squamous cell carcinoma
Cited by: 7
Author(s): Guofang Guan, Ying Zheng, Lianji Wen, Dejun Zhang, Duo‐Jiao Yu, Yan-qing Lu, Zhao Yan, Hui Zhang
Software Mentions: 1
Published: over 9 years ago

10.1186/s12974-017-0825-6

Astrocyte-specific overexpressed gene signatures in response to methamphetamine exposure in vitro
Cited by: 29
Author(s): Nikki Bortell, Liana V. Basova, Svetlana Semenova, Howard S. Fox, Timothy Ravasi, Maria Cecília Garibaldi Marcondes
Software Mentions: 1
Published: over 7 years ago

10.3390/genes10120962

Computational Inference of Gene Co-Expression Networks for the identification of Lung Carcinoma Biomarkers: An Ensemble Approach
Cited by: 4
Author(s): Fernando M. Delgado-Chaves, Francisco Gómez-Vela, Miguel García-Torres, José Luis Vázquez Noguera
Software Mentions: 1
Published: about 5 years ago

10.3892/mmr.2015.3277

Screening and functional pathway analysis of genes associated with pediatric allergic asthma using a DNA microarray
Cited by: 9
Author(s): Liqun Lu, Wei Liao
Software Mentions: 1
Published: almost 10 years ago

10.3892/mmr.2014.2137

Module-based functional pathway enrichment analysis of a protein-protein interaction network to study the effects of intestinal microbiota depletion in mice
Cited by: 6
Author(s): Zhiying Jia, Yang Xia, Danian Tong, Jing Yao, Hongqi Chen, Jun Yang
Software Mentions: 1
Published: over 10 years ago

10.3892/mmr.2014.2756

Neuronal calcium signaling pathways are associated with the development of epilepsy
Cited by: 14
Author(s): Fanjuan Meng, Yu You, Zhiliang Liu, Jianming Liu, Hu Ding, Ran Xu
Software Mentions: 1
Published: about 10 years ago

10.3390/genes11080908

A Four-Methylated lncRNAs-Based Prognostic Signature for Hepatocellular Carcinoma
Cited by: 9
Author(s): Leen Liao, Dandan Hu, Yun Zheng
Software Mentions: 1
Published: over 4 years ago

10.1002/cam4.2433

The establishment of immune infiltration based novel recurrence predicting nomogram in prostate cancer
Cited by: 35
Author(s): Jialin Meng, Yi Liu, Shi-Yang Guan, Song Fan, Jun Zhou, Meng Zhang, Chaozhao Liang
Software Mentions: 1
Published: over 5 years ago

10.3390/genes11101193

Campylobacter jejuni Cas9 Modulates the Transcriptome in Caco-2 Intestinal Epithelial Cells
Cited by: 9
Author(s): Chinmoy Saha, Deborah Horst-Kreft, Inez Kross, Peter J. van der Spek, Rogier Louwen, Peter van Baarlen
Software Mentions: 1
Published: about 4 years ago

10.1177/1073274819831260

Identification of Potential Key Genes and Pathways in Early-Onset Colorectal Cancer Through Bioinformatics Analysis
Cited by: 39
Author(s): Bin Zhao, Zulqarnain Baloch, Yunhan Ma, Weiping Zheng, Yani Huo, Fujun Li, Yilin Zhao
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-021-01821-2

Identification the ferroptosis-related gene signature in patients with esophageal adenocarcinoma
Cited by: 58
Author(s): Lei Zhu, Fugui Yang, Lingwei Wang, Dong Lin, Zhiyuan Huang, Guangxue Wang, Guohan Chen
Software Mentions: 1
Published: almost 4 years ago

10.18632/oncotarget.15662

PIF* promotes brain re-myelination locally while regulating systemic inflammation- clinically relevant multiple sclerosis M.smegmatis model
Cited by: 17
Author(s): Giuseppe Migliara, Martin Mueller, Alessia Piermattei, Chaya Brodie, Michael J. Paidas, Eytan R. Barnea, Francesco Ria
Software Mentions: 1
Published: over 7 years ago

10.1523/JNEUROSCI.1511-19.2019

Gamma Visual Stimulation Induces a Neuroimmune Signaling Profile Distinct from Acute Neuroinflammation
Cited by: 33
Author(s): Kristie M. Garza, Lu Zhang, Ben Borron, Levi B. Wood, Annabelle C. Singer
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12935-020-01651-8

Hsa_circ_0004831 serves as a blood-based prognostic biomarker for colorectal cancer and its potentially circRNA-miRNA-mRNA regulatory network construction
Cited by: 13
Author(s): Linlin Xing, Mengyan Xia, Xin Jiao, Ling Fan
Software Mentions: 1
Published: about 4 years ago

10.3390/genes12020307

Epigenetic Regulation of Processes Related to High Level of Fibroblast Growth Factor 21 in Obese Subjects
Cited by: 7
Author(s): Teresa Płatek, Anna Polus, Joanna Góralska, Urszula Raźny, Agnieszka Dziewońska, Agnieszka Micek, A. Dembińska-Kieć, Bogdan Solnica, Małgorzata Malczewska-Malec
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12935-020-01302-y

Serum-derived three-circRNA signature as a diagnostic biomarker for hepatocellular carcinoma
Cited by: 44
Author(s): Xianghong Sun, Yu-Tong Wang, Guofu Li, Nan Zhang, Ling Fan
Software Mentions: 1
Published: over 4 years ago

10.1186/s12885-019-5927-3

Estimation of immune cell content in tumor using single-cell RNA-seq reference data
Cited by: 28
Author(s): Xiaoqing Yu, Yian Ann Chen, José R. Conejo-Garcia, Christine H. Chung, Xuefeng Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-020-01725-7

miR-636 inhibits EMT, cell proliferation and cell cycle of ovarian cancer by directly targeting transcription factor Gli2 involved in Hedgehog pathway
Cited by: 11
Author(s): Jiong Ma, Chunxia Zhou, Xuejun Chen
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12885-018-4852-1

Development of acquired resistance to lapatinib may sensitise HER2-positive breast cancer cells to apoptosis induction by obatoclax and TRAIL
Cited by: 17
Author(s): Alex J. Eustace, Neil T. Conlon, Martina S.J. McDermott, Brigid C. Browne, Patrick C. O’Leary, Frankie A. Holmes, Virginia Espina, Lance A. Liotta, Joyce O’Shaughnessy, Clair Gallagher, Lorraine O’Driscoll, Sweta Rani, Stephen F. Madden, Neil A. O’Brien, Charles Ginther, Dennis J. Slamon, Naomi Walsh, William M. Gallagher, Radosław Zagożdżon, R. William G. Watson, Norma O’Donovan, John Crown
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-020-07184-7

Low dose environmental radon exposure and breast tumor gene expression
Cited by: 5
Author(s): Cheng Peng, Natalie DuPré, Trang VoPham, Yujing J. Heng, Gabrielle M. Baker, Christopher A. Rubadue, Kimberly Glass, Abhijeet R. Sonawane, Oana A. Zeleznik, Peter Kraft, Susan E. Hankinson, A. Heather Eliassen, Jaime E. Hart, Francine Laden, Rulla M. Tamimi
Software Mentions: 1
Published: over 4 years ago

10.1186/s12885-018-4251-7

Comparative analysis of histologically classified oligodendrogliomas reveals characteristic molecular differences between subgroups
Cited by: 15
Author(s): Chris Lauber, Barbara Klink, Michael Seifert
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-020-01566-4

Glioma exosomal microRNA-148a-3p promotes tumor angiogenesis through activating the EGFR/MAPK signaling pathway via inhibiting ERRFI1
Cited by: 24
Author(s): Meng Wang, Yi Zhao, Zhiyun Yu, Ren-De Zhang, Shuang Li, Peng Zhang, Ti-Kun Shan, Xueyou Liu, Zeming Wang, Peichao Zhao, Hongwei Sun
Software Mentions: 1
Published: about 4 years ago

10.1007/s12263-014-0390-x

Vitamin C supplementation modulates gene expression in peripheral blood mononuclear cells specifically upon an inflammatory stimulus: a pilot study in healthy subjects
Cited by: 32
Author(s): Raffaella Canali, Lucia Natarelli, Guido Leoni, Elena Azzini, Raffaella Comitato, Oezgur Sancak, Luca Barella, Fabio Virgili
Software Mentions: 1
Published: over 10 years ago

10.1186/s12263-019-0644-8

Effect of gestational oily fish intake on the risk of allergy in children may be influenced by FADS1/2, ELOVL5 expression and DNA methylation
Cited by: 13
Author(s): Purevsuren Losol, Faisal I. Rezwan, Veeresh Patil, Carina Venter, Susan Ewart, Hongmei Zhang, Syed Hasan Arshad, Wilfried Karmaus, John W. Holloway
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-016-2355-5

Progesterone receptor blockade in human breast cancer cells decreases cell cycle progression through G2/M by repressing G2/M genes
Cited by: 12
Author(s): Susan E. Clare, Akash Gupta, Mi Ran Choi, Manish Ranjan, Oukseub Lee, Jun Wang, David Ivancic, Julie Kim, Seema A. Khan
Software Mentions: 1
Published: over 8 years ago

10.1186/s12885-019-5838-3

Novel significant stage-specific differentially expressed genes in hepatocellular carcinoma
Cited by: 52
Author(s): Arjun Sarathi, Ashok Palaniappan
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-020-01633-w

Integrative in silico and in vitro transcriptomics analysis revealed new lncRNAs related to intrinsic apoptotic genes in colorectal cancer
Cited by: 9
Author(s): Fatemeh Akbari, Maryam Peymani, Ali Salehzadeh, Kamran Ghaedi
Software Mentions: 1
Published: about 4 years ago

10.18632/oncotarget.6379

Different prognostic impact ofSTK11mutations in non-squamous non-small-cell lung cancer
Cited by: 59
Author(s): Nicolas Pécuchet, Pierre Laurent‐Puig, Audrey Lupo, Antoine Legras, Marco Alifano, Karine Pallier, Audrey Didelot, Laure Gibault, Claire Danel, Pierre‐Alexandre Just, Marc Riquet, Françoise Le Pimpec-Barthes, Diane Damotte, Elizabeth Fabre, Hélène Blons
Software Mentions: 1
Published: almost 9 years ago

Projects: bioconductor: limma

Papers Mentioning limma 7,776