10.1038/cdd.2015.31

The tumor-modulatory effects of Caspase-2 and Pidd1 do not require the scaffold protein Raidd
Cited by: 19
Author(s): Lukas Peintner, Loretta Dorstyn, Sharad Kumar, Tatsiana Aneichyk, Andreas Villunger, Claudia Manzl
Software Mentions: 1
Published: over 11 years ago

10.1038/s41419-019-2089-9

CircRNA-5692 inhibits the progression of hepatocellular carcinoma by sponging miR-328-5p to enhance DAB2IP expression
Cited by: 155
Author(s): Zhenguo Liu, Yang Yu, Zebing Huang, Yi Kong, Xingwang Hu, Wei Xiao, Jun Quan, Xue Fan
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12943-018-0849-2

Knockdown of long non-coding RNA NEAT1 inhibits glioma cell migration and invasion via modulation of SOX2 targeted by miR-132
Cited by: 157
Author(s): Ke Zhou, Chi Zhang, Hui Yao, Xuewen Zhang, Youxin Zhou, Yanjun Che, Yulun Huang
Software Mentions: 1
Published: about 8 years ago

10.1155/2021/9956078

RSV Promotes Epithelial Neuroendocrine Phenotype Differentiation through NODAL Signaling Pathway
Cited by: 3
Author(s): Dan Liŭ, Zhongxiang Tang, Kezi Qiu, Ousman Bajinka, Lili Wang, Ling Qin, Yurong Tan
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2105-12-197

Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in breast cancer
Cited by: 37
Author(s): Hiroko Kato Solvang, Ole Christian Lingjærde, Arnoldo Frigessi, Anne‐Lise Børresen‐Dale, Vessela N. Kristensen
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pbio.0020258

Interdependency of Brassinosteroid and Auxin Signaling in Arabidopsis
Cited by: 525
Author(s): Jennifer L. Nemhauser, Todd C. Mockler, Joanne Chory
Software Mentions: 1
Published: about 22 years ago

10.1038/s41419-021-03565-3

CircRNA circ_0124554 blocked the ubiquitination of AKT promoting the skip lymphovascular invasion on hepatic metastasis in colorectal cancer
Cited by: 17
Author(s): Junwei Tang, Chuan Zhang, Yuesheng Huang, Lu Wang, Zhiwu Xu, Dongsheng Zhang, Yue Zhang, Wen Peng, Yifei Feng, Yueming Sun
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-11-27

Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach
Cited by: 101
Author(s): Dirk Repsilber, Sabine Kern, Anna Telaar, Gerhard Walzl, Gillian F. Black, Joachim Selbig, Shreemanta K. Parida, Stefan H. E. Kaufmann, Marc Jacobsen
Software Mentions: 1
Published: over 16 years ago

10.3390/metabo11040195

Metabolic Signature of Arrhythmogenic Cardiomyopathy
Cited by: 5
Author(s): Chiara Volani, Johannes Michael Rainer, Vinicius Veri Hernandes, Viviana Meraviglia, Peter P. Pramstaller, Sigurdur Smarason, Giulio Pompilio, Michela Casella, Elena Sommariva, Giuseppe Paglia, Alessandra Rossini
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-020-02771-9

PRMT5 promotes cancer cell migration and invasion through the E2F pathway
Cited by: 17
Author(s): Wojciech Barczak, Jin Li, Simon M. Carr, Shonagh Munro, Samuel R. Ward, Alexander Kanapin, Anastasia Samsonova, Nicholas B. La Thangué
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-20457-3

Conserved DNA Methylation Signatures in Early Maternal Separation and in Twins Discordant for CO2 Sensitivity
Cited by: 13
Author(s): Francesca Giannese, Alessandra Luchetti, Giulia Barbiera, Valentina Lampis, Claudio Zanettini, Gun Peggy Knudsen, Simona Scaini, Dejan Lazarevic, Davide Cittaro, Francesca R. D’Amato, Marco Battaglia
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-20161-2

ITGB1-dependent upregulation of Caveolin-1 switches TGFβ signalling from tumour-suppressive to oncogenic in prostate cancer
Cited by: 24
Author(s): Teijo Pellinen, Sami Blom, Sara Rubio Sánchez, Katja Välimäki, John-Patrick Mpindi, Hind Azegrouz, Raffaele Strippoli, Raquel Nieto, Mariano Vitón, Irene Palacios, Riku Turkki, Yinhai Wang, Miguel Sánchez-Álvarez, Stig Nordling, Anna Bützow, Tuomas Mirtti, Antti Rannikko, Marı́a C. Montoya, Olli Kallioniemi, Miguel Á. del Pozo
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-20885-1

Laminar Flow Attenuates Macrophage Migration Inhibitory Factor Expression in Endothelial Cells
Cited by: 9
Author(s): Congzhen Qiao, Shengdi Li, Haocheng Lu, Fan Meng, Yanbo Fan, Yanhong Guo, Y. Eugene Chen, Jifeng Zhang
Software Mentions: 1
Published: over 8 years ago

10.1155/2021/1028158

Development and Validation of an Autophagy-Related Signature for Head and Neck Squamous Cell Carcinoma
Cited by: 3
Author(s): Chang Liu, Wenling Wu, Meng Xu, Jing-Lin Mi, Longjiang Xu, Rensheng Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s40364-018-0141-z

Dysregulated transcriptional networks in KMT2A- and MLLT10-rearranged T-ALL
Cited by: 9
Author(s): Huining Kang, Nitesh Sharma, Christian K. Nickl, Meenakshi Devidas, Mignon L. Loh, Stephen P. Hunger, Kimberly P. Dunsmore, Stuart S. Winter, Ksenia Matławska-Wasowska
Software Mentions: 1
Published: about 8 years ago

10.1186/1476-4598-13-151

Identification of a gene signature of a pre-transformation process by senescence evasion in normal human epidermal keratinocytes
Cited by: 12
Author(s): Nathalie Martin, Clara Salazar-Cardozo, Chantal Vercamer, Louise Ott, Guillemette Marot, Predrag Slijepčević, Corinne Abbadie, Olivier Pluquet
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-018-21201-7

Development of a primary human Small Intestine-on-a-Chip using biopsy-derived organoids
Cited by: 479
Author(s): Magdalena Kasendra, Alessio Tovaglieri, Alexandra Sontheimer-Phelps, Hossein Baharvand, Amir Bein, Angeliki Chalkiadaki, William Scholl, Cheng Zhang, Hannah Rickner, Camilla A. Richmond, Hu Li, David T. Breault, Donald E. Ingber
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-020-2543-8

The circular RNA FAM169A functions as a competitive endogenous RNA and regulates intervertebral disc degeneration by targeting miR-583 and BTRC
Cited by: 26
Author(s): Wei Guo, Kun Mu, Bin Zhang, Chao Sun, Ling Zhao, Zhan‐Yin Dong, Qing Cui
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-021-03511-3

Sunitinib treatment promotes metastasis of drug-resistant renal cell carcinoma via TFE3 signaling pathway
Cited by: 16
Author(s): Luchao Li, Shuo Zhao, Zhengfang Liu, Nianzhao Zhang, Shengyong Pang, Ji‐Kai Liu, Cheng Liu, Yi‐Ming Fan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-21684-4

Molecular basis of differential nitrogen use efficiencies and nitrogen source preferences in contrasting Arabidopsis accessions
Cited by: 19
Author(s): Jochen Menz, Tim Range, Johannes Trini, Uwe Ludewig, Benjamin Neuhäuser
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms21176092

Metabolite Patterns in Human Myeloid Hematopoiesis Result from Lineage-Dependent Active Metabolic Pathways
Cited by: 4
Author(s): Lars Kaiser, Helga Weinschrott, Isabel Quint, Markus Blaess, René Csuk, Manfred Jung, Matthias Kohl, Hans‐Peter Deigner
Software Mentions: 1
Published: about 6 years ago

10.1038/s41419-021-03601-2

Circ-HMGA2 (hsa_circ_0027446) promotes the metastasis and epithelial-mesenchymal transition of lung adenocarcinoma cells through the miR-1236-3p/ZEB1 axis
Cited by: 24
Author(s): Zhongjian Yu, Xiongjie Zhu, Ying Liu, Min Liang, Meijun Liu, Zhile Liu, Lijie Qin, Xiaogang Wu, Kunpeng Du, Lu Liu, Yong Wang, Yanfang Zheng
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-021-03626-7

Circular RNA hsa_circ_101555 promotes hepatocellular carcinoma cell proliferation and migration by sponging miR-145-5p and regulating CDCA3 expression
Cited by: 14
Author(s): Xiaoguang Gu, Jianan Zhang, Yajuan Ran, Hena Pan, JinHong Jia, Ying Zhao, Xin Zhao, Wendi Li, Shasha Song, Xuezhong Yu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-21337-6

CD38 promotes pristane-induced chronic inflammation and increases susceptibility to experimental lupus by an apoptosis-driven and TRPM2-dependent mechanism
Cited by: 24
Author(s): Sonia García‐Rodríguez, Antonio Rosal-Vela, Davide Botta, Luz Milbeth Cumba Garcia, Esther Zumaquero, Verónica Prados-Maniviesa, Daniela Cerezo-Wallis, Nicola Lo Buono, José-Ángel Robles-Guirado, Salvador Guerrero, Elena González-Paredes, Eduardo Andrés-León, Ángel L. Corbí, Matthias Mack, Friedrich Koch-Nolte, Ramón Merino, Mercedes Zubiaur, Frances E. Lund, Jaime Sancho
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-23129-4

Baseline mRNA expression differs widely between common laboratory strains of zebrafish
Cited by: 16
Author(s): Lindsay A. Holden, Kim H. Brown
Software Mentions: 1
Published: over 8 years ago

10.3390/biology10090939

HuD Regulates mRNA-circRNA-miRNA Networks in the Mouse Striatum Linked to Neuronal Development and Drug Addiction
Cited by: 7
Author(s): Michela Dell’Orco, Amir Elyaderani, Annika Vannan, Shobana Sekar, Gregory L. Powell, Winnie S. Liang, Janet L. Neisewander, Nora I. Perrone‐Bizzozero
Software Mentions: 1
Published: almost 5 years ago

10.3390/biology10070609

Human Trisomic iPSCs from Down Syndrome Fibroblasts Manifest Mitochondrial Alterations Early during Neuronal Differentiation
Cited by: 11
Author(s): Nunzia Mollo, M. Esposito, Miriam Aurilia, Roberta Scognamiglio, Rossella Accarino, Ferdinando Bonfiglio, Rita Cicatiello, Maria Charalambous, Claudio Procaccini, Teresa Micillo, Rita Genesio, Gaetano Calı̀, Agnese Secondo, Simona Paladino, Giuseppe Matarese, Gabriella De Vita, Anna Conti, Lucio Nitsch, Antonella Izzo
Software Mentions: 1
Published: about 5 years ago

10.1038/s41419-020-2532-y

The circular RNA circMAST1 promotes hepatocellular carcinoma cell proliferation and migration by sponging miR-1299 and regulating CTNND1 expression
Cited by: 26
Author(s): Xuezhong Yu, Ping Sheng, Jing Sun, Xijuang Zhao, Junting Zhang, Yiying Li, YiMeng Zhang, Wenxiu Zhang, Jianqi Wang, Kunpeng Liu, Daling Zhu, Hongchi Jiang
Software Mentions: 1
Published: over 6 years ago

10.1038/cddis.2016.180

AKT activation controls cell survival in response to HDAC6 inhibition
Cited by: 21
Author(s): Maciej Kaliszczak, Sebastian Trousil, Taqdir Ali, Eric O. Aboagye
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-018-23492-2

Identification of potential key protein interaction networks of BK virus nephropathy in patients receiving kidney transplantation
Cited by: 12
Author(s): Linpei Jia, Wenbin Fu, Rufu Jia, Leiyun Wu, Xiaoxia Li, Qiang Jia, Hong‐Liang Zhang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-018-1096-6

Integrative analysis of transcriptomics and clinical data uncovers the tumor-suppressive activity of MITF in prostate cancer
Cited by: 12
Author(s): Lorea Valcárcel-Jiménez, Alice Macchia, Natalia Martín-Martín, Ana R. Cortazar, Ariane Schaub-Clerigué, Mikel Pujana-Vaquerizo, Sonia Fernández-Ruiz, Isabel Lacasa-Viscasillas, Aida Santos-Martin, Ana Loizaga-Iriarte, Miguel Unda, Ivana Heřmanová, Ianire Astobiza, Mariona Graupera, Júlia Starková, James D. Sutherland, Rosa Barrio, Ana M. Aransay, Arkaitz Carracedo, Verónica Torrano
Software Mentions: 1
Published: almost 8 years ago

10.1038/cddis.2017.544

miR-99a reveals two novel oncogenic proteins E2F2 and EMR2 and represses stemness in lung cancer
Cited by: 68
Author(s): Andrea Feliciano, Yoelsis García-Mayea, Luz Jubierre, Cristina Mir, Manuela Hummel, Josep Castellví, Javier Hernández‐Losa, Rosanna Paciucci, Irene Sansano, Yaxin Sun, Santiago Ramón y Cajal, Hiroshi Kondon, Aroa Soriano, Miguel F. Segura, Alex Lyakhovich, Matilde E. Lleonart
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41419-018-0450-z

miR-381-3p knockdown improves intestinal epithelial proliferation and barrier function after intestinal ischemia/reperfusion injury by targeting nurr1
Cited by: 45
Author(s): Liwei Liu, Jihong Yao, Zhenlu Li, Guo Zu, Decheng Feng, Li Yang, W Qasim, Su Zhang, Tong Li, Huizhi Zeng, Xiaofeng Tian
Software Mentions: 1
Published: over 8 years ago

10.3390/biology10030221

Gene Co-Expression Analysis of Human RNASEH2A Reveals Functional Networks Associated with DNA Replication, DNA Damage Response, and Cell Cycle Regulation
Cited by: 3
Author(s): Stefania Marsili, Ailone Tichon, Deepali L. Kundnani, Francesca Storici
Software Mentions: 1
Published: over 5 years ago

10.1186/1476-4598-14-1

Melanoma cells influence the differentiation pattern of human epidermal keratinocytes
Cited by: 81
Author(s): Ondřej Kodet, Lukáš Lacina, Eliška Krejčí, Bařbora Dvořánková, Miloš Grim, Jiří Štork, Daniela Kodetová, Čestmı́r Vlček, Jana Šáchová, Michal Kolář, Hynek Strnad, Karel Smetana
Software Mentions: 1
Published: over 11 years ago

10.18632/oncotarget.21621

Pediatric brain tumor cells release exosomes with a miRNA repertoire that differs from exosomes secreted by normal cells
Cited by: 39
Author(s): Ágota Tűzesi, Teresia Kling, Anna Wenger, Taral R. Lunavat, Su Chul Jang, Bertil Rydenhag, Jan Lötvall, Steven M. Pollard, Anna Danielsson, Helena Carén
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41419-019-1498-0

Comparison of human isogeneic Wharton’s jelly MSCs and iPSC-derived MSCs reveals differentiation-dependent metabolic responses to IFNG stimulation
Cited by: 12
Author(s): Liani Devito, Michail E. Klontzas, Aleksandra Čvoro, Antonio Galleu, Marisa Simon, Carl Hobbs, Francesco Dazzi, Athanasios Mantalaris, Yacoub Khalaf, Duško Ilić
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.19743

lncRNA PVT1 and its splicing variant function as competing endogenous RNA to regulate clear cell renal cell carcinoma progression
Cited by: 56
Author(s): Tao Yang, Hui Zhou, Peijun Liu, Libin Yan, Weimin Yao, Ke Chen, Jin Zeng, Heng Li, Junhui Hu, Hua Xu, Zhangqun Ye
Software Mentions: 1
Published: about 9 years ago

10.1186/2042-6410-5-8

The effects of perinatal testosterone exposure on the DNA methylome of the mouse brain are late-emerging
Cited by: 105
Author(s): Negar Ghahramani, Tuck C Ngun, Pao‐Yang Chen, Yuan Tian, Sangitha Krishnan, Stephanie Muir, Liudmilla Rubbi, Arthur P. Arnold, Geert J. De Vries, Nancy G. Forger, Matteo Pellegrini, Éric Vilain
Software Mentions: 1
Published: over 12 years ago

10.1038/s41419-020-03029-0

LncRNA MNX1-AS1 promotes progression of intrahepatic cholangiocarcinoma through the MNX1/Hippo axis
Cited by: 20
Author(s): Fengwei Li, Qinjunjie Chen, Hui Xue, Lei Zhang, Kui Wang, Feng Shen
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21186660

The brlA Gene Deletion Reveals That Patulin Biosynthesis Is Not Related to Conidiation in Penicillium expansum
Cited by: 7
Author(s): Chrystian Zetina-Serrano, Ophélie Rocher, Claire Naylies, Yannick Lippi, Isabelle P. Oswald, Sophie Lorber, Olivier Puel
Software Mentions: 1
Published: about 6 years ago

10.1038/s41419-018-1102-z

The thiosemicarbazone Me2NNMe2 induces paraptosis by disrupting the ER thiol redox homeostasis based on protein disulfide isomerase inhibition
Cited by: 33
Author(s): Sonja Hager, Katharina Korbula, Bjoern Bielec, Michael Grusch, Christine Pirker, Markus Schosserer, Lisa Liendl, Magdalena Lang, Johannes Grillari, Karin Nowikovsky, Veronika F.S. Pape, Thomas Mohr, Gergely Szakács, Bernhard K. Keppler, Walter Berger, Christian R. Kowol, Petra Heffeter
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms21186858

Preventive Triple Gene Therapy Reduces the Negative Consequences of Ischemia-Induced Brain Injury after Modelling Stroke in a Rat
Cited by: 13
Author(s): Vage Markosyan, Zufar Z. Safiullov, Andrei Izmailov, Filip Fadeev, Mikhail Sokolov, M. S. Kuznetsov, Д. А. Трофимов, Evgeny Kim, Grayr Kundakchyan, Airat Gibadullin, И. И. Салафутдинов, Л. Ф. Нуруллин, Farid Vagizovich Bashirov, Р. Р. Исламов
Software Mentions: 1
Published: almost 6 years ago

10.1128/JVI.02828-14

Analysis of the Early Immune Response to Infection by Infectious Bursal Disease Virus in Chickens Differing in Their Resistance to the Disease
Cited by: 43
Author(s): Jacqueline Smith, Jean-Rémy Sadeyen, Colin Butter, Pete Kaiser, David W. Burt
Software Mentions: 1
Published: over 11 years ago

10.1186/s13293-017-0149-3

Sex differences in microRNA-mRNA networks: examination of novel epigenetic programming mechanisms in the sexually dimorphic neonatal hypothalamus
Cited by: 25
Author(s): Christopher P. Morgan, Tracy L. Bale
Software Mentions: 1
Published: about 9 years ago

10.1038/cddis.2017.49

Neuroblastoma cells depend on HDAC11 for mitotic cell cycle progression and survival
Cited by: 41
Author(s): Theresa Thole, Marco Lodrini, Johannes Fabian, Jasmin Wuenschel, Sebastian Pfeil, Thomas Hielscher, Annette Kopp‐Schneider, Ulrike Heinicke, Simone Fulda, Olaf Witt, Angelika Eggert, Matthias Fischer, Hedwig E. Deubzer
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-021-03951-x

Global transcriptomic changes in glomerular endothelial cells in mice with podocyte depletion and glomerulosclerosis
Cited by: 2
Author(s): Jia Fu, Zhengzi Yi, Ming Cai, Yuan Wang, Weijia Zhang, Kyung Hwa Lee, John Cijiang He
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.3000270

Foxp1 is critical for the maintenance of regulatory T-cell homeostasis and suppressive function
Cited by: 37
Author(s): Jiajun Ren, Lei Han, Jialei Tang, Yuanhua Liu, Xiaoxue Deng, Qiuyue Liu, Pei Hao, Xiaoming Feng, Bin Li, Hui Hu, Haikun Wang
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-9-117

A mixture model approach to sample size estimation in two-sample comparative microarray experiments
Cited by: 14
Author(s): Tommy S Jørstad, Herman Midelfart, Atle M. Bones
Software Mentions: 1
Published: over 18 years ago

10.1038/s41420-018-0096-8

The role of miR-106p-5p in cervical cancer: from expression to molecular mechanism
Cited by: 17
Author(s): Yuexiong Yi, Yanyan Liu, Wanrong Wu, Kejia Wu, Wei Zhang
Software Mentions: 1
Published: almost 8 years ago

10.1038/cddiscovery.2017.15

Cell-free chromatin from dying cancer cells integrate into genomes of bystander healthy cells to induce DNA damage and inflammation
Cited by: 38
Author(s): Indraneel Mittra, Urmila Samant, Suvarna Sharma, G. Raghuram, Tannistha Saha, Pritishkumar Tidke, Namrata Pancholi, Deepika Gupta, Preeti Prasannan, Ashwini Gaikwad, Nilesh Gardi, Rohan Chaubal, Pawan Upadhyay, Kavita Pal, Bhagyeshri Rane, Alfina Shaikh, Sameer Salunkhe, Shilpee Dutt, Pradyumna Kumar Mishra, Naveen K. Khare, Naveen Kumar Nair, Amit Dutt
Software Mentions: 1
Published: over 9 years ago

10.1186/s13293-018-0213-7

Sex-related DNA methylation differences in B cell chronic lymphocytic leukemia
Cited by: 23
Author(s): Shuchun Lin, Yun Liu, Lynn R. Goldin, Chao Lyu, Xiangyin Kong, Yan Zhang, Neil E. Caporaso, Song Xiang, Ying Gao
Software Mentions: 1
Published: over 7 years ago

10.1038/s41420-021-00562-5

Implication of human endogenous retrovirus W family envelope in hepatocellular carcinoma promotes MEK/ERK-mediated metastatic invasiveness and doxorubicin resistance
Cited by: 24
Author(s): Yan Zhou, Lijuan Liu, Youyi Liu, Ping Zhou, Qiujin Yan, Honglian Yu, Xiaobei Chen, Fan Zhu
Software Mentions: 1
Published: about 5 years ago

10.1186/s40659-018-0175-6

Bioinformatics analysis of microarray data to reveal the pathogenesis of diffuse intrinsic pontine glioma
Cited by: 16
Author(s): Wei Li, Fei He, Wen Zhang, Wenhua Chen, Bo Yu
Software Mentions: 1
Published: about 8 years ago

10.1038/s41420-021-00625-7

Dipeptidyl peptidase-4 (DPP4) inhibitor sitagliptin alleviates liver inflammation of diabetic mice by acting as a ROS scavenger and inhibiting the NFκB pathway
Cited by: 17
Author(s): Xin Wang, Jing Ke, Yingjun Zhu, Bin Cao, Ruili Yin, Yan Wang, Lingling Wei, Lijie Zhang, Longyan Yang, Dong Zhao
Software Mentions: 1
Published: about 5 years ago

10.1038/s41420-018-0036-7

Characterization of dysregulated lncRNA-mRNA network based on ceRNA hypothesis to reveal the occurrence and recurrence of myocardial infarction
Cited by: 39
Author(s): Guangde Zhang, Haoran Sun, Yawei Zhang, Hengqiang Zhao, Wenjing Fan, Jianfei Li, Yingli Lv, Qiong Song, Jiayao Li, Mingyu Zhang, Hang Shi
Software Mentions: 1
Published: over 8 years ago

10.1038/s41420-021-00525-w

Hypoxic TAM-derived exosomal miR-155-5p promotes RCC progression through HuR-dependent IGF1R/AKT/PI3K pathway
Cited by: 25
Author(s): Wei Gu, Linjing Gong, Xu Wu, Xudong Yao
Software Mentions: 1
Published: over 5 years ago

10.1038/cddiscovery.2016.16

Mitochondrial DNA plasticity is an essential inducer of tumorigenesis
Cited by: 26
Author(s): William Lee, Jason E. Cain, Andrew Cuddihy, Jacqueline L. Johnson, Adam Dickinson, K-Y Yeung, Beena Kumar, Terrance G. Johns, D. Neil Watkins, Andrew Spencer, Justin C. St. John
Software Mentions: 1
Published: over 10 years ago

10.18632/aging.203381

Hsa-circ-0007292 promotes the osteogenic differentiation of posterior longitudinal ligament cells via regulating SATB2 by sponging miR-508-3p
Cited by: 5
Author(s): Aiting Jiang, Nanxiang Wang, Xinxing Yan, Yunheng Jiang, Chengyi Song, Hui Chi, Guanghua Chen, Feng Wu, Yiqin Ji, Jinglong Yan
Software Mentions: 1
Published: about 5 years ago

10.1186/s40659-017-0108-9

Analysis of gene expression changes associated with human carcinoma-associated fibroblasts in non-small cell lung carcinoma
Cited by: 16
Author(s): Xiaofen Wu, Lei Ruan, Yi Yang, Qi Mei
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-24282-6

Dynamic transcriptomic analysis of Ischemic Injury in a Porcine Pre-Clinical Model mimicking Donors Deceased after Circulatory Death
Cited by: 14
Author(s): Sébastien Giraud, Clara Steichen, Géraldine Allain, Pierre Couturier, Delphine Labourdette, Sophie Lamarre, Virginie Ameteau, Solenne Tillet, Patrick Hannaert, Raphaël Thuillier, Thierry Hauet
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-24546-1

The observed alteration in BCL2 expression following lithium treatment is influenced by the choice of normalization method
Cited by: 7
Author(s): Odeya Damri, Galila Agam, Lilah Toker
Software Mentions: 1
Published: over 8 years ago

10.1016/j.biopsych.2021.03.009

Developmental Profile of Psychiatric Risk Associated With Voltage-Gated Cation Channel Activity
Cited by: 10
Author(s): Nicholas E. Clifton, Leonardo Collado‐Torres, Emily E. Burke, Antonio F. Pardiñas, Janet Harwood, Arianna Di Florio, James Walters, Michael John Owen, Daniel R. Weinberger, Peter Holmans, Andrew E. Jaffe, Jérémy Hall
Software Mentions: 1
Published: about 5 years ago

10.1080/21623945.2020.1795434

Integrative analyses of biomarkers and pathways for adipose tissue after bariatric surgery
Cited by: 17
Author(s): Yingshan Liu, Jing Jin, Yanshan Chen, Chuna Chen, Zhenguo Chen, Lingling Xu
Software Mentions: 1
Published: over 6 years ago

10.1016/j.molcel.2018.11.013

Noncanonical Modulation of the eIF2 Pathway Controls an Increase in Local Translation during Neural Wiring
Cited by: 64
Author(s): Roberta Cagnetta, Hovy Ho-Wai Wong, Christian K. Frese, Giovanna R. Mallucci, Jeroen Krijgsveld, Christine E. Holt
Software Mentions: 1
Published: over 7 years ago

10.1242/bio.027391

miR-9a mediates the role of Lethal giant larvae as an epithelial growth inhibitor in Drosophila
Cited by: 5
Author(s): Scott G. Daniel, Atlantis Dawn Russ, Kathryn M. Guthridge, Ammad Raina, Patricia S. Estes, Linda M. Parsons, Helena E. Richardson, Joyce A. Schroeder, Daniela C. Zarnescu
Software Mentions: 1
Published: over 9 years ago

10.22074/cellj.2018.4991

Bioinformatic Analysis Identifies Three Potentially Key Differentially Expressed Genes in Peripheral Blood Mononuclear Cells of Patients with Takayasu's Arteritis.
Cited by: 0
Author(s): Renping Huang, Yang He, Bei Sun, Bing Liu
Software Mentions: 1
Published: over 8 years ago

10.1016/j.cmet.2018.02.007

Visceral Adipose Tissue Immune Homeostasis Is Regulated by the Crosstalk between Adipocytes and Dendritic Cell Subsets
Cited by: 106
Author(s): Claire Elizabeth Macdougall, Elizabeth G. Wood, Jakob Loschko, Valeria Scagliotti, Féaron C. Cassidy, Mark E. Robinson, Niklas Feldhahn, Leandro Castellano, Mathieu-Benoı̂t Voisin, Federica M. Marelli‐Berg, Carles Gaston‐Massuet, Marika Charalambous, M. Paula Longhi
Software Mentions: 1
Published: over 8 years ago

10.1016/j.molcel.2019.03.040

METTL1 Promotes let-7 MicroRNA Processing via m7G Methylation
Cited by: 261
Author(s): Luca Pandolfini, Isaia Barbieri, Andrew J. Bannister, Alan G. Hendrick, Byron Andrews, Natalie A. Webster, Pierre Murat, Pia Mach, Rossella Brandi, Samuel Robson, Valentina Migliori, Andrej Alendar, Mara D’Onofrio, Shankar Balasubramanian, Tony Kouzarides
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-25512-7

Expressional analysis of disease-relevant signalling-pathways in primary tumours and metastasis of head and neck cancers
Cited by: 16
Author(s): Dorothée Goesswein, Negusse Habtemichael, Aslihan Gerhold‐Ay, Johanna Mazur, Désirée Wünsch, Shirley K. Knauer, Julian Künzel, Christoph Matthias, Sebastian Strieth, Roland H. Stauber
Software Mentions: 1
Published: over 8 years ago

10.1186/s11658-019-0183-8

Monoamine oxidase-A activity is required for clonal tumorsphere formation by human breast tumor cells
Cited by: 10
Author(s): William D. Gwynne, Mirza S. Shakeel, Jianhan Wu, Robin Hallett, Adele Girgis-Gabardo, Anna Dvorkin‐Gheva, John A. Hassell
Software Mentions: 1
Published: almost 7 years ago

10.1002/cam4.2171

An integrated analysis reveals the oncogenic function of lncRNA LINC00511 in human ovarian cancer
Cited by: 22
Author(s): Jing Wang, Yongju Tian, Hui Zheng, Yan Ding, Xiuli Wang
Software Mentions: 1
Published: over 7 years ago

10.3390/membranes11090674

Bioinformatic Analysis of ABCA1 Gene Expression in Smoking and Chronic Obstructive Pulmonary Disease
Cited by: 4
Author(s): Stanislav Kotlyarov, Anna Kotlyarova
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms21196988

Proteomics Analysis of Plasma Membrane Fractions of the Root, Leaf, and Flower of Rice
Cited by: 2
Author(s): Yukimoto Iwasaki, Takafumi Itoh, Yusuke Hagi, Sakura Matsuta, Aki Nishiyama, Genki Chaya, Yuki Kobayashi, Kotaro Miura, Setsuko Komatsu
Software Mentions: 1
Published: almost 6 years ago

10.6026/97320630017348

Molecular docking analysis of stachydrine and sakuranetin with IL-6 and TNF-α in the context of inflammation
Cited by: 12
Author(s): Inamul Hasan Madar, Ghazala Sultan, Iftikhar Aslam Tayubi, Atif Noorul Hasan, Bandana Pahi, Anjali Rai, Pravitha Kasu Sivanandan, Tamizhini Loganathan, M. Yasmin Begum, Sneha Rai
Software Mentions: 1
Published: over 5 years ago

10.6026/97320630015853

Genomic profiling of Nipah virus using NGS driven RNA-Seq expression data
Cited by: 1
Author(s): Zakiul Hassan, Shakil Ahmed, Md Marufuzzaman Khan, Mohammad Ahsan Uddin, Fahmida Chowdhury, Md. Kamruzzaman
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-26944-x

Mitochondrial function is impaired in the skeletal muscle of pre-frail elderly
Cited by: 66
Author(s): Pénélope Andreux, Marcus P.J. van Diemen, Maxime R. Heezen, Johan Auwerx, Chris Rinsch, Geert Jan Groeneveld, Anurag Singh
Software Mentions: 1
Published: over 8 years ago

10.1007/s00018-013-1336-y

Function of the C. elegans T-box factor TBX-2 depends on SUMOylation
Cited by: 13
Author(s): Paul Huber, Tanya Crum, Lynn M. Clary, Tom Ronan, Adelaide V. Packard, Peter G. Okkema
Software Mentions: 1
Published: over 13 years ago

10.1007/s00018-021-03902-x

Chronic exposure to Cytolethal Distending Toxin (CDT) promotes a cGAS-dependent type I interferon response
Cited by: 6
Author(s): Benoît J. Pons, Aurélie Pettes-Duler, Claire Naylies, Frédéric Taïeb, Catherine Bouchenot, Saleha Hashim, Patrick Rouimi, Maxime Deslande, Yannick Lippi, Gladys Mirey, Julien Vignard
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-26865-9

Identifying conserved UV exposure genes and mechanisms
Cited by: 6
Author(s): Susana I. L. Gomes, Carlos P. Roca, Janeck J. Scott-Fordsmand, Mónica J.B. Amorim
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0086490

Genome and Transcriptome Analysis of the Basidiomycetous Yeast Pseudozyma antarctica Producing Extracellular Glycolipids, Mannosylerythritol Lipids
Cited by: 34
Author(s): Tomotake Morita, Hideaki Koike, Hiroko Hagiwara, Emi Ito, Masayuki Machida, Shun Sato, Hiroshi Habe, Daï Kitamoto
Software Mentions: 1
Published: over 12 years ago

10.1007/s00018-020-03703-8

Shared extracellular vesicle miRNA profiles of matched ductal pancreatic adenocarcinoma organoids and blood plasma samples show the power of organoid technology
Cited by: 14
Author(s): Anikó Zeöld, Gyöngyvér Orsolya Sándor, Anna L. Kiss, András Áron Soós, Tamás Tölgyes, Attila Bursics, Ákos Szücs, László Harsányi, Ágnes Kittel, András Gézsi, Edit I. Buzás, Zoltán Wiener
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.20441

Crosstalk in competing endogenous RNA network reveals the complex molecular mechanism underlying lung cancer
Cited by: 45
Author(s): Xiang Jin, Yinghui Guan, Hui Sheng, Yang Liu
Software Mentions: 1
Published: about 9 years ago

10.1093/bioinformatics/btz256

Hybrid analysis of gene dynamics predicts context-specific expression and offers regulatory insights
Cited by: 2
Author(s): Justin D. Finkle, Neda Bagheri
Software Mentions: 1
Published: over 7 years ago

10.3390/jpm11020107

Potential Role of miRNAs in the Acquisition of Chemoresistance in Neuroblastoma
Cited by: 7
Author(s): Barbara Marengo, Alessandra Pulliero, Maria Valeria Corrias, Riccardo Leardi, Emanuele Farinini, Gilberto Fronza, Paola Menichini, Lorenzo Monteleone, Giulia Elda Valenti, Andrea Speciale, Patrizia Perri, Francesca Madia, Alberto Izzotti, Cinzia Domenicotti
Software Mentions: 1
Published: over 5 years ago

10.1016/j.molcel.2017.08.003

The RNA m 6 A Reader YTHDF2 Is Essential for the Post-transcriptional Regulation of the Maternal Transcriptome and Oocyte Competence
Cited by: 263
Author(s): Ivayla Ivanova, Christian Much, Monica Di Giacomo, Chiara Azzi, Marcos Morgan, Pedro Ventura De Oliveira Moreira, Jack Monahan, Claudia Carrieri, Anton J. Enright, Dónal O’Carroll
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2105-12-134

SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects
Cited by: 69
Author(s): Alexis Dereeper, Stéphane Nicolas, Loïc Le Cunff, Roberto Baciliéri, Agnès Doligez, Jean‐Pierre Péros, Manuel Ruiz, Patrice This
Software Mentions: 1
Published: over 15 years ago

10.1016/j.molcel.2021.04.018

Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase
Cited by: 31
Author(s): Ka-Yiu Edwin Kong, Bernd Fischer, Matthias Meurer, Ilia Kats, Zhao-Yan Li, Frank Rühle, Joseph D. Barry, Daniel Kirrmaier, Veronika Chevyreva, Bryan-Joseph San Luis, Michael Costanzo, Wolfgang Huber, Brenda Andrews, Charles Boone, Michael Knop, Anton Khmelinskii
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-27900-5

Comparative Analysis of Mutant Huntingtin Binding Partners in Yeast Species
Cited by: 5
Author(s): Yanding Zhao, Ashley A. Zurawel, Nicole P. Jenkins, Martin L. Duennwald, Chao Cheng, Arminja N. Kettenbach, Surachai Supattapone
Software Mentions: 1
Published: about 8 years ago

10.1186/s13040-018-0174-8

Integrative analysis of gene expression and methylation data for breast cancer cell lines
Cited by: 8
Author(s): Catherine Li, Juyon Lee, Jessica Ding, Shuying Sun
Software Mentions: 1
Published: about 8 years ago

10.1007/s12032-021-01470-5

Identification BCL6 and miR-30 family associating with Ibrutinib resistance in activated B-cell-like diffuse large B-cell lymphoma
Cited by: 5
Author(s): Jiazheng Li, Yan Huang, Yun Zhang, Junping Wen, Yanxin Chen, Lingyan Wang, Peifang Jiang, Jianda Hu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-018-2117-2

Robust volcano plot: identification of differential metabolites in the presence of outliers
Cited by: 25
Author(s): Nishith Kumar, Md. Rakibul Hoque, Masahiro Sugimoto
Software Mentions: 1
Published: over 8 years ago

10.1016/j.celrep.2021.109155

Copy number aberrations drive kinase rewiring, leading to genetic vulnerabilities in cancer
Cited by: 9
Author(s): Danish Memon, Michael B. Gill, Evangelia K. Papachristou, David Ochoa, Clive S. D’Santos, Martin L. Miller, Pedro Beltrão
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-28168-5

Identification of novel ΔNp63α-regulated miRNAs using an optimized small RNA-Seq analysis pipeline
Cited by: 5
Author(s): Suraj Sakaram, Michael P. Craig, Natasha T. Hill, Amjad A. Aljagthmi, Christian M. Garrido, Oleg Paliy, Michael Bottomley, Michael L. Raymer, Madhavi Kadakia
Software Mentions: 1
Published: about 8 years ago

10.1186/s13040-020-00217-8

Merging microarray studies to identify a common gene expression signature to several structural heart diseases
Cited by: 9
Author(s): Olga Fajarda, Sara Duarte-Pereira, Raquel M. Silva, José Luís Oliveira
Software Mentions: 1
Published: about 6 years ago

10.1089/big.2015.0057

Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases
Cited by: 36
Author(s): Venkata Satagopam, Wei Gu, Serge Eifes, Piotr Gawron, Marek Ostaszewski, Stephan Gebel, Adriano Barbosa-Silva, Rudi Balling, Reinhard Schneider
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0057458

Estrogen Signalling and the Metabolic Syndrome: Targeting the Hepatic Estrogen Receptor Alpha Action
Cited by: 49
Author(s): Marko Matic, Galyna Bryzgalova, Hui Gao, Per Antonson, Patricia Humire, Yoko Omoto, Neil Portwood, Camilla Pramfalk, Suad Efendić, Per Olof Berggren, Jan Åke Gustafsson, Karin Dahlman-Wright
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-018-28563-y

Fatty liver is associated with blood pathways of inflammatory response, immune system activation and prothrombotic state in Young Finns Study
Cited by: 10
Author(s): Tuukka Taipale, Ilkka Seppälä, Emma Raitoharju, Nina Mononen, Leo-Pekka Lyytikäinen, Thomas Illig, Mélanie Waldenberger, Markus Juonala, Nina Hutri‐Kähönen, Niku Oksala, Mika Kähönen, Olli T. Raitakari, Terho Lehtimäki
Software Mentions: 1
Published: about 8 years ago

10.1136/bmjopen-2020-043644

Protocol for a prospective, observational, deep phenotyping study on adipose epigenetic and lipidomic determinants of metabolic homoeostasis in South Asian Indians: the Indian Diabetes and Metabolic Health (InDiMeT) study
Cited by: 1
Author(s): Nikhil Nadiger, Sarita Devi, Tinku Thomas, Ambily Sivadas, Rebecca Raj-Kuriyan, Sridar Govindaraj, Anura V Kurpad, Arpita Mukhopadhyay
Software Mentions: 1
Published: over 5 years ago

10.1186/s12917-015-0575-6

The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds
Cited by: 39
Author(s): Jacqueline Smith, Jean-Rémy Sadeyen, David Cavanagh, Pete Kaiser, David W. Burt
Software Mentions: 1
Published: almost 11 years ago