10.1186/s40659-017-0108-9

Analysis of gene expression changes associated with human carcinoma-associated fibroblasts in non-small cell lung carcinoma
Cited by: 16
Author(s): Xiaofen Wu, Lei Ruan, Yi Yang, Qi Mei
Software Mentions: 1
Published: over 9 years ago

10.1016/j.biopsych.2021.03.009

Developmental Profile of Psychiatric Risk Associated With Voltage-Gated Cation Channel Activity
Cited by: 10
Author(s): Nicholas E. Clifton, Leonardo Collado‐Torres, Emily E. Burke, Antonio F. Pardiñas, Janet Harwood, Arianna Di Florio, James Walters, Michael John Owen, Daniel R. Weinberger, Peter Holmans, Andrew E. Jaffe, Jérémy Hall
Software Mentions: 1
Published: about 5 years ago

10.1242/bio.027391

miR-9a mediates the role of Lethal giant larvae as an epithelial growth inhibitor in Drosophila
Cited by: 5
Author(s): Scott G. Daniel, Atlantis Dawn Russ, Kathryn M. Guthridge, Ammad Raina, Patricia S. Estes, Linda M. Parsons, Helena E. Richardson, Joyce A. Schroeder, Daniela C. Zarnescu
Software Mentions: 1
Published: over 9 years ago

10.6026/97320630017348

Molecular docking analysis of stachydrine and sakuranetin with IL-6 and TNF-α in the context of inflammation
Cited by: 12
Author(s): Inamul Hasan Madar, Ghazala Sultan, Iftikhar Aslam Tayubi, Atif Noorul Hasan, Bandana Pahi, Anjali Rai, Pravitha Kasu Sivanandan, Tamizhini Loganathan, M. Yasmin Begum, Sneha Rai
Software Mentions: 1
Published: over 5 years ago

10.6026/97320630015853

Genomic profiling of Nipah virus using NGS driven RNA-Seq expression data
Cited by: 1
Author(s): Zakiul Hassan, Shakil Ahmed, Md Marufuzzaman Khan, Mohammad Ahsan Uddin, Fahmida Chowdhury, Md. Kamruzzaman
Software Mentions: 1
Published: over 6 years ago

10.1007/s00726-015-1956-7

Homocysteine thiolactone and N-homocysteinylated protein induce pro-atherogenic changes in gene expression in human vascular endothelial cells
Cited by: 74
Author(s): Dorota Gurda, Luiza Handschuh, Weronika Kotkowiak, Hieronim Jakubowski
Software Mentions: 1
Published: over 11 years ago

10.1093/bioinformatics/btz256

Hybrid analysis of gene dynamics predicts context-specific expression and offers regulatory insights
Cited by: 2
Author(s): Justin D. Finkle, Neda Bagheri
Software Mentions: 1
Published: over 7 years ago

10.18632/aging.103245

Identification and validation of hub microRNAs dysregulated in esophageal squamous cell carcinoma
Cited by: 16
Author(s): Chen Sang, Ce Chao, Wang Min, Youpu Zhang, Guanghua Luo, Xiaoying Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/s13040-018-0174-8

Integrative analysis of gene expression and methylation data for breast cancer cell lines
Cited by: 8
Author(s): Catherine Li, Juyon Lee, Jessica Ding, Shuying Sun
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-021-92603-3

TXNDC2 joint molecular marker is associated with testis pathology and is an accurate predictor of sperm retrieval
Cited by: 3
Author(s): Seyed-Morteza Javadirad, Mohammad Javad Mokhtari
Software Mentions: 1
Published: about 5 years ago

10.1164/rccm.202005-1761OC

Circulating BMP9 Protects the Pulmonary Endothelium during Inflammation-induced Lung Injury in Mice
Cited by: 27
Author(s): Wei Li, Long Lü, Xudong Yang, Zhen Tong, Mark Southwood, Ross King, Paola Caruso, Paul D. Upton, Peiran Yang, Geoffrey A Bocobo, Ivana Nikolić, Angelica Higuera, Richard M. Salmon, He Jiang, Katharine M Lodge, Kim Hoenderdos, Rebecca M. Baron, Paul B. Yu, Alison M. Condliffe, Charlotte Summers, Sussan Nourshargh, Edwin R. Chilvers, Nicholas W. Morrell
Software Mentions: 1
Published: over 5 years ago

10.1186/s13040-020-00217-8

Merging microarray studies to identify a common gene expression signature to several structural heart diseases
Cited by: 9
Author(s): Olga Fajarda, Sara Duarte-Pereira, Raquel M. Silva, José Luís Oliveira
Software Mentions: 1
Published: about 6 years ago

10.18632/aging.202862

Methylation factor MRPL15 identified as a potential biological target in Alzheimer’s disease
Cited by: 2
Author(s): Li Gao, Jianmei Li, Ming Yan, Aili Maimaiti
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-93789-2

Integrative analysis of key candidate genes and signaling pathways in acute coronary syndrome related to obstructive sleep apnea by bioinformatics
Cited by: 2
Author(s): Yanxi Shi, Zhengye Jiang, Liqin Jiang, Jianjiang Xu
Software Mentions: 1
Published: about 5 years ago

10.1089/big.2015.0057

Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases
Cited by: 36
Author(s): Venkata Satagopam, Wei Gu, Serge Eifes, Piotr Gawron, Marek Ostaszewski, Stephan Gebel, Adriano Barbosa-Silva, Rudi Balling, Reinhard Schneider
Software Mentions: 1
Published: over 10 years ago

10.1186/1710-1492-10-32

Th17/Treg ratio derived using DNA methylation analysis is associated with the late phase asthmatic response
Cited by: 28
Author(s): Amrit Singh, Masatsugu Yamamoto, Jian Ruan, Jung‐Hye Choi, Gail M. Gauvreau, Sven Olek, Ulrich Hoffmueller, Christopher Carlsten, J. Mark FitzGerald, Louis‐Philippe Boulet, Paul M. O'Byrne, Scott J. Tebbutt
Software Mentions: 1
Published: about 12 years ago

10.1136/bmjopen-2020-043644

Protocol for a prospective, observational, deep phenotyping study on adipose epigenetic and lipidomic determinants of metabolic homoeostasis in South Asian Indians: the Indian Diabetes and Metabolic Health (InDiMeT) study
Cited by: 1
Author(s): Nikhil Nadiger, Sarita Devi, Tinku Thomas, Ambily Sivadas, Rebecca Raj-Kuriyan, Sridar Govindaraj, Anura V Kurpad, Arpita Mukhopadhyay
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-93780-x

Growth arrest and DNA damage-inducible proteins (GADD45) in psoriasis
Cited by: 6
Author(s): Pedro Rodríguez‐Jiménez, Lola Fernández-Messina, María C. Ovejero‐Benito, Pablo Chicharro, Paula Vera-Tomé, Alicia Vara, Danay Cibrián, Pedro Martínez‐Fleta, María Jiménez-Fernández, Inés Sánchez-García, Mar Llamas‐Velasco, Francisco Abad‐Santos, Francisco Sánchez-Madrid, E. Daudén, Hortensia de la Fuente
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-94154-z

MiR-486-3p was downregulated at microRNA profiling of adrenals of multiple endocrine neoplasia type 1 mice, and inhibited human adrenocortical carcinoma cell lines
Cited by: 1
Author(s): Su-Chen Li, Azita Monazzam, Masoud Razmara, Xia Chu, Peter Stålberg, Britt Skogseid
Software Mentions: 1
Published: about 5 years ago

10.1186/s12917-015-0575-6

The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds
Cited by: 39
Author(s): Jacqueline Smith, Jean-Rémy Sadeyen, David Cavanagh, Pete Kaiser, David W. Burt
Software Mentions: 1
Published: almost 11 years ago

10.1186/1746-6148-9-138

Five markers useful for the distinction of canine mammary malignancy
Cited by: 12
Author(s): Karol Pawłowski, Henryk Maciejewski, Kinga Majchrzak, I. Dolka, Jan A. Mol, T. Motyl, Magdalena Król
Software Mentions: 1
Published: about 13 years ago

10.1186/1746-6148-8-35

The gene expression profiles of canine mammary cancer cells grown with carcinoma-associated fibroblasts (CAFs) as a co-culture in vitro
Cited by: 19
Author(s): Magdalena Król, Karol Pawłowski, K. Szyszko, Henryk Maciejewski, I. Dolka, Elisabetta Manuali, Michał Jank, T. Motyl
Software Mentions: 1
Published: over 14 years ago

10.1186/1746-6148-9-78

Gene expression profiles in canine mammary carcinomas of various grades of malignancy
Cited by: 13
Author(s): Karol Pawłowski, Henryk Maciejewski, I. Dolka, Jan A. Mol, T. Motyl, Magdalena Król
Software Mentions: 1
Published: over 13 years ago

10.1111/all.14016

Blood eosinophil count and airway epithelial transcriptome relationships in COPD versus asthma
Cited by: 31
Author(s): Lauren George, Adam Taylor, Anna Esteve‐Codina, María Soler Artigas, Gian Andri Thun, Stewart Bates, Stelios Pavlidis, Scott Wagers, Anne Boland, Antje Prasse, Pierà Boschetto, David Parr, Adam Nowiński, Imre Barta, Jens M. Hohlfeld, Timm Greulich, Maarten van den Berge, Pieter S. Hiemstra, Wim Timens, Timothy S C Hinks, Sally E. Wenzel, Salman Siddiqui, Matthew Richardson, Per Venge, Simon Heath, Marta Gut, Martin D. Tobin, Lindsay J. Edwards, John Riley, Ratko Djukanović, Charles Auffray, Bertrand DeMeulder, Sven Erik-Dahlen, Ian M. Adcock, Kian Fan Chung, Loems Ziegler-Heitbrock, Peter J. Sterk, Dave Singh, Christopher E. Brightling
Software Mentions: 1
Published: about 7 years ago

10.1186/s12894-021-00857-w

Exploring microRNA target genes and identifying hub genes in bladder cancer based on bioinformatic analysis
Cited by: 3
Author(s): Hongjian Wu, Wubing Jiang, Guanghua Ji, Rong Xu, Gaobo Zhou, Hongyuan Yu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-94554-1

Honey bee queen health is unaffected by contact exposure to pesticides commonly found in beeswax
Cited by: 7
Author(s): Alison McAfee, Joseph Milone, Bradley N. Metz, Erin McDermott, Leonard J. Foster, David R. Tarpy
Software Mentions: 1
Published: about 5 years ago

10.1186/1752-0509-7-69

Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice
Cited by: 17
Author(s): Nicolas Tchitchek, Amie J. Eisfeld, Jennifer Tisoncik-Go, Laurence Josset, Lisa E. Gralinski, Christophe Bécavin, Susan C. Tilton, Bobbie-Jo M. Webb-Robertson, Martin T. Ferris, Allison L. Totura, Chengjun Liu, Gabriele Neumann, Thomas O. Metz, Richard D. Smith, Katrina M. Waters, Ralph S. Baric, Yoshihiro Kawaoka, Michael G. Katze
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-021-94532-7

Experimental long-term diabetes mellitus alters the transcriptome and biomechanical properties of the rat urinary bladder
Cited by: 7
Author(s): Emad A. Hindi, Craig J. Williams, Leo Zeef, Filipa Lopes, Katie Newman, Martha M. M. Davey, Nigel Hodson, Emma Hilton, Jennifer L. Huang, Karen Price, Neil Roberts, David A. Long, Adrian S. Woolf, Natalie J. Gardiner
Software Mentions: 1
Published: about 5 years ago

10.1186/1752-0509-4-68

Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation
Cited by: 9
Author(s): Subir Kumar Nandy, Paula Jouhten, Jens Nielsen
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-021-95120-5

Whole blood gene expression within days after total-body irradiation predicts long term survival in Gottingen minipigs
Cited by: 4
Author(s): Sunita Chopra, Maria Moroni, Jaleal Sanjak, Laurel MacMillan, Bernadette Hritzo, Shannon Martello, Michelle Bylicky, Jared M. May, C. Norman Coleman, Molykutty J. Aryankalayil
Software Mentions: 1
Published: about 5 years ago

10.14336/AD.2020.1112

Prediction of SARS-CoV Interaction with Host Proteins during Lung Aging Reveals a Potential Role for TRIB3 in COVID-19
Cited by: 9
Author(s): Diogo de Moraes, Brunno Vivone Buquete Paiva, Sarah Santiloni Cury, Raissa G. Ludwig, João Pessoa Araújo, Marcelo A. Mori, Robson Francisco Carvalho
Software Mentions: 1
Published: over 5 years ago

10.1186/1752-0509-7-80

Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder
Cited by: 23
Author(s): Ruoting Yang, Bernie J. Daigle, Seid Muhie, Rasha Hammamieh, Marti Jett, Linda R. Petzold, Francis J. Doyle
Software Mentions: 1
Published: about 13 years ago

10.1155/2021/7394344

PP2 Ameliorates Renal Fibrosis by Regulating the NF-κB/COX-2 and PPARγ/UCP2 Pathway in Diabetic Mice
Cited by: 11
Author(s): Jinying Wei, Xia Deng, Li Yang, Runmei Li, Zhaohua Yang, Xiuyuan Li, Shan Song, Yonghong Shi, Huijun Duan, Haijiang Wu
Software Mentions: 1
Published: almost 5 years ago

10.1111/acel.13213

SS‐31 and NMN: Two paths to improve metabolism and function in aged hearts
Cited by: 33
Author(s): Jeremy Whitson, Alessandro Bitto, Huiliang Zhang, Mariya T. Sweetwyne, Rene Coig, Saakshi Bhayana, Eric G. Shankland, Lu Wang, Theo K. Bammler, Kathryn F. Mills, Shoichi Imai, Kevin E. Conley, David J. Marcinek, Peter S. Rabinovitch
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-95902-x

Immunomodulation by durvalumab and pomalidomide in patients with relapsed/refractory multiple myeloma
Cited by: 2
Author(s): Mary Young, Greg E. Pietz, Elizabeth Whalen, Wilbert B. Copeland, Ethan Thompson, Brian Fox, Kathryn J. Newhall
Software Mentions: 1
Published: about 5 years ago

10.1186/1752-0509-2-101

Genetic and systems level analysis of Drosophila sticky/citron kinase and dFmr1 mutants reveals common regulation of genetic networks
Cited by: 9
Author(s): Christopher R. Bauer, Andrew Michael Epstein, Sarah Sweeney, Daniela C. Zarnescu, Giovanni Bosco
Software Mentions: 1
Published: almost 18 years ago

10.1186/s13104-018-4020-3

Transcriptomes of microglia in experimental cerebral malaria in mice in the presence and absence of Type I Interferon signaling
Cited by: 5
Author(s): Carlos Talavera-López, Barbara Capuccini, Richard Mitter, Jing-wen Lin, Jean Langhorne
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13104-020-05121-2

Physical activity and blood gene expression profiles: the Norwegian Women and Cancer (NOWAC) Post-genome cohort
Cited by: 1
Author(s): Karina Standahl Olsen, Marko Lukic, Kristin Benjaminsen Borch
Software Mentions: 1
Published: over 6 years ago

10.1111/acel.12174

Combined administration of testosterone plus an ornithine decarboxylase inhibitor as a selective prostate‐sparing anabolic therapy
Cited by: 13
Author(s): Ravi Jasuja, James C. Costello, Rajan Singh, Vandana Gupta, Catherine S. Spina, Gianluca Toraldo, Hyeran Jang, Hu Li, Carlo Serra, Wen Guo, Pratibha Chauhan, Navjot S. Narula, Tyler Guarneri, Ayla Ergün, Thomas G. Travison, James J. Collins, Shalender Bhasin
Software Mentions: 1
Published: almost 13 years ago

10.1186/s13104-019-4410-1

Unique microglia expression profile in developing white matter
Cited by: 20
Author(s): Ori Staszewski, Nora Hagemeyer
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-95293-z

Early prognosis of respiratory virus shedding in humans
Cited by: 3
Author(s): Manuchehr Aminian, Tomojit Ghosh, Amy Peterson, Angela L. Rasmussen, Shannon Stiverson, Kartikay Sharma, Michael Kirby
Software Mentions: 1
Published: about 5 years ago

10.1186/1756-0500-6-428

Parallel deep transcriptome and proteome analysis of zebrafish larvae
Cited by: 15
Author(s): Magnus Palmblad, Christiaan V. Henkel, Ron P. Dirks, Annemarie H. Meijer, André M. Deelder, Herman P. Spaink
Software Mentions: 1
Published: almost 13 years ago

10.1038/s41598-021-96855-x

Deep learning from HE slides predicts the clinical benefit from adjuvant chemotherapy in hormone receptor-positive breast cancer patients
Cited by: 5
Author(s): Soo Youn Cho, Jeong Hoon Lee, Jai Min Ryu, Jeong Eon Lee, Eun Yoon Cho, Chang Ho Ahn, Kyunghyun Paeng, Inwan Yoo, Chan‐Young Ock, Sang Yong Song
Software Mentions: 1
Published: about 5 years ago

10.1186/1756-0500-7-871

miRNome of inflammatory breast cancer
Cited by: 35
Author(s): D. V. Maltseva, Vladimir Galatenko, Timur R. Samatov, Svetlana Zhikrivetskaya, N. A. Khaustova, И. Н. Нечаев, M. Yu. Shkurnikov, A. V. Lebedev, Irina Mityakina, А. Д. Каприн, Udo Schumacher, Alexander G. Tonevitsky
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-021-96875-7

A virus-free cellular model recapitulates several features of severe COVID-19
Cited by: 3
Author(s): G Lavorgna, Giulio Cavalli, Lorenzo Dagna, Silvia Gregori, Alessandro Larcher, Giovanni Landoni, Fabio Ciceri, Francesco Montorsi, Andrea Salonia
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms221910819

Transcriptome Analyses Identify Potential Key microRNAs and Their Target Genes Contributing to Ovarian Reserve
Cited by: 1
Author(s): Yoon Young Kim, Kwang S. Kim, Yong Jin Kim, Sung Woo Kim, Hoon Kim, Seung‐Yup Ku
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13104-015-1567-0

Derivation of induced pluripotent stem cells from orangutan skin fibroblasts
Cited by: 22
Author(s): Krishna Ramaswamy, Wing Yan Yik, Xiaoming Wang, Erin N. Oliphant, Wange Lu, Darryl Shibata, Oliver A. Ryder, Joseph G. Hacia
Software Mentions: 1
Published: almost 11 years ago

10.1186/1756-0500-5-40

Factors affecting the yield of microRNAs from laser microdissectates of formalin-fixed tissue sections
Cited by: 6
Author(s): Santosh K. Patnaik, Eric Kannisto, Sai Yendamuri
Software Mentions: 1
Published: over 14 years ago

10.1186/s13104-021-05635-3

Integrated microRNA and mRNA gene expression in peripheral blood mononuclear cells in response to acute psychosocial stress: a repeated-measures within-subject pilot study
Cited by: 1
Author(s): Magdalena Jurkiewicz, Anett Mueller-Alcazar, Dirk Moser, Indralatha Jayatilaka, Anatoly Mikhailik, Jamie Ferri, Nia Fogelman, Turhan Canli
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-97433-x

Quantitative global lipidomics analysis of patients with ovarian cancer versus benign adnexal mass
Cited by: 10
Author(s): Matthew F. Buas, Charles W. Drescher, Nicole Urban, Christopher I. Li, Lisa Bettcher, Nitai C. Hait, Kirsten B. Moysich, Kunle Odunsi, Daniel Raftery, Li Yan
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-97406-0

KCa channel blockers increase effectiveness of the EGF receptor TK inhibitor erlotinib in non-small cell lung cancer cells (A549)
Cited by: 14
Author(s): Felix Glaser, Petra Hundehege, Etmar Bulk, Luca Matteo Todesca, Sandra Schimmelpfennig, Elke Nass, Thomas Budde, Sven G. Meuth, Albrecht Schwab
Software Mentions: 1
Published: about 5 years ago

10.1186/s12890-017-0472-9

Unsupervised gene expression analyses identify IPF-severity correlated signatures, associated genes and biomarkers
Cited by: 24
Author(s): Yunguan Wang, Jaswanth Yella, Jing Chen, Francis X. McCormack, Satish K. Madala, Anil G. Jegga
Software Mentions: 1
Published: almost 9 years ago

10.18632/aging.102765

Testicular biopsies microarray analysis reveals circRNAs are involved in the pathogenesis of non-obstructive azoospermia
Cited by: 8
Author(s): Hao Bo, Zhizhong Liu, Ruiling Tang, Guanghui Gong, Xingming Wang, Han Zhang, Fang Zhu, Dai Zhou, Wenbing Zhu, Yue‐Qiu Tan, Liqing Fan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-98580-x

Altered microRNA and mRNA profiles during heart failure in the human sinoatrial node
Cited by: 8
Author(s): Ning Li, Esthela J. Artiga, Anuradha Kalyanasundaram, Brian J. Hansen, Amy Webb, Maciej Pietrzak, Brandon J. Biesiadecki, Bryan A. Whitson, Nahush A. Mokadam, Paul M.L. Janssen, John D. Hummel, Peter J. Mohler, Halina Dobrzynski, Vadim V. Fedorov
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2466-11-39

The asthma candidate gene NPSR1 mediates isoform specific downstream signalling
Cited by: 22
Author(s): Christina Orsmark-Pietras, Johanna Vendelin, Francesca Anedda, Sara Bruce, Mikael Adner, L. Sundman, Ville Pulkkinen, Harri Alenius, Mauro D’Amato, Cilla Söderhäll, Juha Kere
Software Mentions: 1
Published: about 15 years ago

10.1186/s12890-021-01549-9

GPC3 affects the prognosis of lung adenocarcinoma and lung squamous cell carcinoma
Cited by: 6
Author(s): Jing Ning, Shenyi Jiang, Xiaoxi Li, Yang Wang, Xuhong Deng, Zhiqiang Zhang, Lijie He, Daqing Wang, Youyu Jiang
Software Mentions: 1
Published: over 5 years ago

10.1111/acel.12745

Molecular profiling of aged neural progenitors identifies <i>Dbx2</i> as a candidate regulator of age-associated neurogenic decline
Cited by: 27
Author(s): Giuseppe Lupo, Paola S. Nisi, Pilar Esteve, Yu-Lee Paul, Clara Lopes Novo, Ben S. Sidders, Muhammad Amir Khan, Stefano Biagioni, Hai-Kun Liu, Paola Bovolenta, Emanuele Cacci, Peter J. Rugg‐Gunn
Software Mentions: 1
Published: over 8 years ago

10.1155/2013/197406

A Local Genetic Algorithm for the Identification of Condition-Specific MicroRNA-Gene Modules
Cited by: 0
Author(s): Wenbo Mu, Damian Roqueiro, Yue Dai
Software Mentions: 1
Published: over 13 years ago

10.1186/2044-5040-1-15

Deregulation of the ubiquitin-proteasome system is the predominant molecular pathology in OPMD animal models and patients
Cited by: 38
Author(s): Seyed Yahya Anvar, Peter A C ‘t Hoen, Andrea Venema, Barbara van der Sluijs, B.G.M. van Engelen, M.M.J. Snoeck, John Vissing, Capucine Trollet, George Dickson, Aymeric Chartier, Martine Simonelig, Gert‐Jan B. van Ommen, Silvère M. van der Maarel, Vered Raz
Software Mentions: 1
Published: over 15 years ago

10.1186/s12884-021-03777-7

Differential circular RNA expression profiles in umbilical cord blood exosomes from preeclampsia patients
Cited by: 7
Author(s): Mingtao Cao, Juan Wen, Chaozhi Bu, Chunyan Li, Yongcheng Lin, Hong Zhang, Yanfang Gu, Zhonghua Shi, Yan Zhang, Wei Long, Le Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-016-0740-5

Fusarium oxysporum f.sp. radicis-lycopersici induces distinct transcriptome reprogramming in resistant and susceptible isogenic tomato lines
Cited by: 40
Author(s): Daniele Manzo, Francesca Ferriello, Gerardo Puopolo, A. Zoina, Daniela D’Esposito, Luca Tardella, Alberto Ferrarini, Maria Raffaella Ercolano
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2229-14-108

Day and night heat stress trigger different transcriptomic responses in green and ripening grapevine (vitis vinifera) fruit
Cited by: 134
Author(s): Markus Rienth, Laurent Torregrosa, Nathalie Luchaire, Ratthaphon Chatbanyong, David Lecourieux, Mary T. Kelly, Charles Romieu
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2229-11-120

Global transcriptome analysis of two ameiotic1 alleles in maize anthers: defining steps in meiotic entry and progression through prophase I
Cited by: 28
Author(s): Guo-Ling Nan, Arnaud Ronceret, Rachel Wang, John Fernandes, W. Zacheus Cande, Virginia Walbot
Software Mentions: 1
Published: over 15 years ago

10.1186/s12870-020-2317-6

Comparative transcriptome analyses of fruit development among pears, peaches, and strawberries provide new insights into single sigmoid patterns
Cited by: 18
Author(s): Mao-Song Pei, Suhao Cao, Lei Wu, Guo‐Ming Wang, Zhihua Xie, Chao Gu, Shaoling Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2229-13-27

Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids
Cited by: 48
Author(s): Hyun Jo Koo, Eric T. McDowell, Xiaoqiang Ma, Kevin Greer, Jeremy Kapteyn, Zhengzhi Xie, Anne Descour, Hye Ran Kim, Yeisoo Yu, David Kudrna, Rod A. Wing, Carol Soderlund, David R. Gang
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2229-11-173

SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus
Cited by: 135
Author(s): Steven G. Hussey, Eshchar Mizrachi, Antanas Spokevicius, Gerd Bossinger, David Kenneth Berger, Alexander Andrew Myburg
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2229-10-134

Delineating the structural, functional and evolutionary relationships of sucrose phosphate synthase gene family II in wheat and related grasses
Cited by: 13
Author(s): Shailendra Sharma, Nese Sreenivasulu, Vokkaliga T. Harshavardhan, Christiane Seiler, Shiveta Sharma, Zaynali Nezhad Khalil, Eduard Akhunov, Sunish K. Sehgal, Marion S. Röder
Software Mentions: 1
Published: over 16 years ago

10.1016/j.stemcr.2015.02.021

Emergence of a Stage-Dependent Human Liver Disease Signature with Directed Differentiation of Alpha-1 Antitrypsin-Deficient iPS Cells
Cited by: 75
Author(s): Andrew Wilson, Ying Lei, Marc Liesa, Charis Patricia Segeritz, Jason A. Mills, Steven S. Shen, Jyh‐Chang Jean, Geordie C. Lonza, Derek C. Liberti, Alex H. Lang, Jean Nazaire, Adam C. Gower, Franz Josef Müeller, Pankaj Mehta, Adriana Ordóñez, David A. Lomas, Ludovic Vallier, George J. Murphy, Gustavo Mostoslavsky, Avrum Spira, Orian S. Shirihai, María I. Ramirez, Paul Gadue, Darrell N. Kotton
Software Mentions: 1
Published: over 11 years ago

10.1016/j.stemcr.2018.09.015

Human Induced Pluripotent Stem Cell-Derived Astrocytes Are Differentially Activated by Multiple Sclerosis-Associated Cytokines
Cited by: 107
Author(s): Sylvain Perriot, Amandine Mathias, Guillaume Perriard, Mathieu Canales, Nils Jonkmans, Nicolas Mérienne, Cécile Meunier, Lina El Kassar, Anselme L. Perrier, David‐Axel Laplaud, Myriam Schluep, Nicole Déglon, Renaud Du Pasquier
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.stemcr.2019.07.004

A Human Stem Cell Model of Fabry Disease Implicates LIMP-2 Accumulation in Cardiomyocyte Pathology
Cited by: 44
Author(s): Matthew J. Birket, Sophie Raibaud, Miriam Lettieri, Antony Adamson, Valérie Letang, Pauline Cervello, Nicolas Redon, Gwénaëlle Ret, Sandra Viale, Bing Wang, Bruno Biton, Jean‐Claude Guillemot, Vincent Mikol, John P. Leonard, Neil A. Hanley, Cécile Orsini, Jean-Michel Itier
Software Mentions: 1
Published: about 7 years ago

10.1016/j.stemcr.2019.12.012

Senescence-Associated Metabolomic Phenotype in Primary and iPSC-Derived Mesenchymal Stromal Cells
Cited by: 53
Author(s): Eduardo Fernández-Rebollo, Julia Franzen, Roman Goetzke, Jonathan Hollmann, Alina Ostrowska, Matteo Oliverio, Torsten Sieben, Björn Rath, Jan-Wilhelm Kornfeld, Wolfgang Wagner
Software Mentions: 1
Published: over 6 years ago

10.1186/scrt130

The gene expression profiles of induced pluripotent stem cells from individuals with childhood cerebral adrenoleukodystrophy are consistent with proposed mechanisms of pathogenesis
Cited by: 27
Author(s): Xiao Ming Wang, Wing Yan Yik, Peilin Zhang, Wange Lu, Patricia Dranchak, Darryl Shibata, Steven J. Steinberg, Joseph G. Hacia
Software Mentions: 1
Published: almost 14 years ago

10.1021/acschemneuro.1c00303

Wide-Ranging Effects on the Brain Proteome in a Transgenic Mouse Model of Alzheimer’s Disease Following Treatment with a Brain-Targeting Somatostatin Peptide
Cited by: 10
Author(s): Fadi Rofo, Friederike Andrea Sandbaumhüter, Aikaterini Chourlia, Nicole G. Metzendorf, Jamie I. Morrison, Stina Syvänen, Per E. Andrén, Erik T. Jansson, Greta Hultqvist
Software Mentions: 1
Published: about 5 years ago

10.1186/s13287-017-0582-6

Term amniotic fluid: an unexploited reserve of mesenchymal stromal cells for reprogramming and potential cell therapy applications
Cited by: 36
Author(s): Roksana Moraghebi, Agnete Kirkeby, Patrícia Chaves, Roger Emanuel Rönn, Ewa Sitnicka, Malin Parmar, Marcus Larsson, Andreas Herbst, Niels Bjarne Woods
Software Mentions: 1
Published: about 9 years ago

10.1186/s13287-018-0848-7

Expression profiling of cell-intrinsic regulators in the process of differentiation of human iPSCs into retinal lineages
Cited by: 15
Author(s): Jen Hua Chuang, Aliaksandr A. Yarmishyn, De‐Kuang Hwang, Chih Chien Hsu, Mong‐Lien Wang, Yi Yang, Ke Hung Chien, Shih Hwa Chiou, Chi Hsien Peng, Shih‐Jen Chen
Software Mentions: 1
Published: over 8 years ago

10.1186/s12870-020-2258-0

Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators
Cited by: 9
Author(s): Sabine Guillaumie, Stéphane Decroocq, Nathalie Ollat, Serge Delrot, Éric Gomès, Sarah Jane Cookson
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2229-9-4

Linkage mapping of putative regulator genes of barley grain development characterized by expression profiling
Cited by: 11
Author(s): Christof Pietsch, Nese Sreenivasulu, Ulrich Wobus, Marion S. Röder
Software Mentions: 1
Published: over 17 years ago

10.1186/1472-6793-13-9

Dynamically regulated miRNA-mRNA networks revealed by exercise
Cited by: 99
Author(s): Alexander G. Tonevitsky, D. V. Maltseva, Asghar Abbasi, Timur R. Samatov, D. A. Sakharov, M. Yu. Shkurnikov, A. V. Lebedev, Vladimir Galatenko, Anatoly I. Grigoriev, Hinnak Northoff
Software Mentions: 1
Published: over 13 years ago

10.1111/jne.12339

Decreased <i>Npas4</i> and <i>Arc </i><scp>mRNA</scp> Levels in the Hippocampus of Aged Memory‐Impaired Wild‐Type But Not Memory Preserved 11β‐<scp>HSD</scp>1 Deficient Mice
Cited by: 20
Author(s): Jing Qiu, Donald R. Dunbar, June Noble, Carolynn Cairns, Rod Carter, Val Kelly, Karen Chapman, Jonathan R. Seckl, Joyce L.W. Yau
Software Mentions: 1
Published: over 10 years ago

10.1186/s12903-021-01827-2

Association between chronic periodontitis and the risk of Alzheimer’s disease: combination of text mining and GEO dataset
Cited by: 8
Author(s): Zhengye Jiang, Yanxi Shi, Wenpeng Zhao, Li-Wei Zhou, Bingchang Zhang, Yuanyuan Xie, Yaya Zhang, Guowei Tan, Zhanxiang Wang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s40478-015-0211-5

Identification of targets for rational pharmacological therapy in childhood craniopharyngioma
Cited by: 84
Author(s): Jacob M. Gump, Andrew M. Donson, Diane K. Birks, Vladimir Amani, Karun K. Rao, Andrea Griesinger, B. K. Kleinschmidt-DeMasters, James M. Johnston, Richard C. E. Anderson, Amy Rosenfeld, Michael H. Handler, Lia Gore, Nicholas K. Foreman, Todd C. Hankinson
Software Mentions: 1
Published: over 11 years ago

10.1111/acel.12229

Gene profiling reveals association between altered Wnt signaling and loss of T-cell potential with age in human hematopoietic stem cells
Cited by: 13
Author(s): Melissa Khoo, Stephen M. Carlin, Mark Lutherborrow, Vivek Jayaswal, D. F. David, John J. Moore
Software Mentions: 1
Published: over 12 years ago

10.1186/s13287-020-1576-3

MicroRNA-495 confers inhibitory effects on cancer stem cells in oral squamous cell carcinoma through the HOXC6-mediated TGF-β signaling pathway
Cited by: 20
Author(s): Xiaolong You, Zhengyu Zhou, Wen Chen, Xiaoyong Wei, Heqiang Zhou, Wenzheng Luo
Software Mentions: 1
Published: over 6 years ago

10.1186/s13287-020-01754-z

Long noncoding RNA LINC00314 facilitates osteogenic differentiation of adipose-derived stem cells through the hsa-miR-129-5p/GRM5 axis via the Wnt signaling pathway
Cited by: 15
Author(s): Shi Z, Hua Zhang, Zhiyong Fan, Wei Ma, Yang Song, Ming Li, Tong-qiu Li, Shuxing Cao, Guo-jun Feng
Software Mentions: 1
Published: about 6 years ago

10.1186/s12886-020-01381-5

Identification of potential molecular targets associated with proliferative diabetic retinopathy
Cited by: 6
Author(s): Dewang Shao, Shang He, Zi Ye, Xuyou Zhu, Wei Sun, Wei Fu, Tianju Ma, Zhaohui Li
Software Mentions: 1
Published: over 6 years ago

10.1186/s12868-016-0333-0

Poly(ADP-ribose) polymerase inhibitors activate the p53 signaling pathway in neural stem/progenitor cells
Cited by: 17
Author(s): Akiko Okuda, Shu Kurokawa, Masanori Takehashi, Aika Maeda, Katsuya Fukuda, Yukari Kubo, Hyuma Nogusa, Tomoka Takatani‐Nakase, Shujiro Okuda, Kunihiro Ueda, Seigo Tanaka
Software Mentions: 1
Published: over 9 years ago

10.1111/acel.13015

Aging induces cardiac mesenchymal stromal cell senescence and promotes endothelial cell fate of the CD90 + subset
Cited by: 27
Author(s): Hélène Martini, Jason S. Iacovoni, Damien Maggiorani, Marianne Dutaur, Dimitri Marsal, Jérôme Roncalli, Romain Itier, Camille Dambrin, Nathalie Pizzinat, Jeanne Mialet‐Perez, Daniel Cussac, Angelo Parini, Lise Lefèvre, Victorine Douin‐Echinard
Software Mentions: 1
Published: about 7 years ago

10.1186/s13287-021-02160-9

Alpha-enolase (ENO1), identified as an antigen to monoclonal antibody 12C7, promotes the self-renewal and malignant phenotype of lung cancer stem cells by AMPK/mTOR pathway
Cited by: 7
Author(s): Shunbin Xiong, Kai-Yue Cao, Huiqi Liu, Yu Lan, Lixin Sun, Zhihua Yang, Chengai Wu, Yuliang Ran
Software Mentions: 1
Published: over 5 years ago

10.1186/s13287-021-02282-0

Exosomes derived from miR-26a-modified MSCs promote axonal regeneration via the PTEN/AKT/mTOR pathway following spinal cord injury
Cited by: 38
Author(s): Yuyong Chen, Zhenming Tian, Lei He, Can Liu, Nangxiang Wang, Limin Rong, Bin Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12974-018-1386-z

The atypical RhoGTPase RhoE/Rnd3 is a key molecule to acquire a neuroprotective phenotype in microglia
Cited by: 10
Author(s): Veronika E. Neubrand, Irene Forte-Lago, Marta Caro, Mario Delgado
Software Mentions: 1
Published: almost 8 years ago

10.1002/stem.2093

Genome-Wide MicroRNA and Gene Analysis of Mesenchymal Stem Cell Chondrogenesis Identifies an Essential Role and Multiple Targets for miR-140-5p
Cited by: 69
Author(s): M.J. Barter, M. Tselepi, Rodolfo Gómez, Steven Paul Woods, Hui Wang, Graham R. Smith, Daryl P. Shanley, Ian M. Clark, David A. Young
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2202-13-126

High throughput analysis reveals dissociable gene expression profiles in two independent neural systems involved in the regulation of social behavior
Cited by: 22
Author(s): Tyler J. Stevenson, Kirstin Replogle, Jenny Drnevich, David F. Clayton, Gregory F. Ball
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12883-019-1509-x

Low free triiodothyronineis predicts worsen neurological outcome of patients with acute ischemic stroke: a retrospective study with bioinformatics analysis
Cited by: 12
Author(s): Shanchao Zhang, Xia Zhao, Shan Xu, Jing Yuan, Zhihua Si, Yang Yang, Shan Qiao, Xuxu Xu, Aihua Wang
Software Mentions: 1
Published: almost 7 years ago

10.1111/acel.12696

Plasticity of lifelong calorie-restricted C57BL/6J mice in adapting to a medium-fat diet intervention at old age
Cited by: 4
Author(s): Fenni Rusli, Mark V. Boekschoten, Vincenzo Borelli, Chen Sun, Carolien Lute, Aswin Menke, Joost van den Heuvel, Stefano Salvioli, Claudio Franceschi, Michael Müller, Wilma T. Steegenga
Software Mentions: 1
Published: over 8 years ago

10.1155/2016/2626081

Genetic Background of Immune Complications after Allogeneic Hematopoietic Stem Cell Transplantation in Children
Cited by: 3
Author(s): Szymon Skoczeń, Mirosław Bik-Multanowski, Jacek J Pietrzyk, Agnieszka Grabowska, Kamil Fijorek, Wojciech Strojny, Kinga Klus-Kwiecińska, Walentyna Balwierz, Maciej Siedlar
Software Mentions: 1
Published: over 10 years ago

10.1111/acel.13013

Senescence‐associated tissue microenvironment promotes colon cancer formation through the secretory factor GDF15
Cited by: 58
Author(s): Yi Guo, Jessica Ayers, Kelly Carter, Ting Wang, Sean K. Maden, Darwin Edmond, Polly Newcomb P, Christopher Li, Cornelia M. Ulrich, Ming Yu, William M. Grady
Software Mentions: 1
Published: about 7 years ago

10.1155/2019/1351860

Promoting Osteogenic Differentiation of Human Adipose-Derived Stem Cells by Altering the Expression of Exosomal miRNA
Cited by: 36
Author(s): Shude Yang, Shu Guo, S. Y. Tong, Xu Sun
Software Mentions: 1
Published: about 7 years ago

10.1186/s12882-021-02356-4

Comprehensive analysis of IgA nephropathy expression profiles: identification of potential biomarkers and therapeutic agents
Cited by: 9
Author(s): Alieh Gholaminejad, Yousof Gheisari, Seyed Amir Jalali, Amir Roointan
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2199-13-9

Novel polysome messages and changes in translational activity appear after induction of adipogenesis in 3T3-L1 cells
Cited by: 16
Author(s): Carolin Fromm‐Dornieden, Silvia von der Heyde, Oleksandr Lytovchenko, Gabriela Salinas-Riester, Bertram Brenig, Tim Beißbarth, Bernhard Baumgartner
Software Mentions: 1
Published: over 14 years ago

10.1186/s12867-017-0091-2

Microarray expression profiling in the denervated hippocampus identifies long noncoding RNAs functionally involved in neurogenesis
Cited by: 14
Author(s): Bingying Deng, Xiang Cheng, Haoming Li, Jianbing Qin, Mei Tian, Guohua Jin
Software Mentions: 1
Published: over 9 years ago