Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: limma

https://packages.ecosyste.ms/registries/bioconductor.org/packages/limma

Linear Models for Microarray Data
3 versions
Latest release: about 1 year ago
314 dependent packages
4,663,292 downloads total

Papers Mentioning limma 7,776

10.1038/s41398-020-01139-z
A genome-wide methylation study reveals X chromosome and childhood trauma methylation alterations associated with borderline personality disorder
Cited by: 6
Author(s): Maria Arranz, Cristina Gallego-Fábrega, Ana Martín-Blanco, Joaquim Soler, Matilde Elices, Elisabet Domínguez-Clavé, Juliana Salazar, Daniel Vega, Laia Briones-Buixassa, Juan Carlos Pascual
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41398-020-01171-z
Dopamine regulates pancreatic glucagon and insulin secretion via adrenergic and dopaminergic receptors
Cited by: 39
Author(s): Despoina Aslanoglou, Suzanne Bertera, Marta Sánchez-Soto, R. Benjamin Free, Jeongkyung Lee, Wei Zong, Xiangning Xue, Shristi Shrestha, Marcela Briššová, Ryan W. Logan, Claes B. Wollheim, Massimo Trucco, Vijay Yechoor, David R. Sibley, Rita Bottino, Zachary Freyberg
Software Mentions: 1
Published: almost 4 years ago
10.1186/1479-5876-9-150
Myocardial production and release of MCP-1 and SDF-1 following myocardial infarction: differences between mice and man
Cited by: 26
Author(s): Andrew Boyle, Yerem Yeghiazarians, Henry Shih, Joy Hwang, Jianqin Ye, Rich Sievers, Daiwei Zheng, Jath Palasubramaniam, D. Palasubramaniam, Connie Karschimkus, Robert Whitbourn, Alicia J. Jenkins, Andrew Wilson
Software Mentions: 1
Published: about 13 years ago
10.18632/oncotarget.25728
Epigenetic activation of HORMAD1 in basal-like breast cancer: role in Rucaparib sensitivity
Cited by: 24
Author(s): Xian Wang, Ying Tan, Xianlong Cao, Jin Ah Kim, Tianmeng Chen, Yiheng Hu, Matthew Wexler, Xiaosong Wang
Software Mentions: 1
Published: over 6 years ago
10.1038/s41398-021-01367-x
White matter deficits in cocaine use disorder: convergent evidence from in vivo diffusion tensor imaging and ex vivo proteomic analysis
Cited by: 9
Author(s): Lucca Pizzato Tondo, Thiago Wendt Viola, Gabriel R. Fries, Bruno Kluwe-Schiavon, Leonardo Mello Rothmann, Renata B. Cupertino, Pedro Eugênio Ferreira, Alexandre R. Franco, Scott D. Lane, Laura Stertz, Zhongming Zhao, Ruifeng Hu, Thomas D. Meyer, Joy M. Schmitz, Consuelo Walss‐Bass, Rodrigo Grassi‐Oliveira
Software Mentions: 1
Published: over 3 years ago
10.18632/aging.103301
miR-137 prevents inflammatory response, oxidative stress, neuronal injury and cognitive impairment via blockade of Src-mediated MAPK signaling pathway in ischemic stroke
Cited by: 38
Author(s): Runhui Tian, Bo Wu, Cong Fu, Kaimin Guo
Software Mentions: 1
Published: over 4 years ago
10.1186/s12920-020-0657-6
DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation
Cited by: 64
Author(s): Ieva Rauluševičiūtė, Finn Drabløs, Morten Rye
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41398-021-01635-w
Exploration of alcohol use disorder-associated brain miRNA–mRNA regulatory networks
Cited by: 20
Author(s): Yolpanhchana Lim, Jennifer E. Beane, Yoshiaki Tanaka, Boting Ning, Christopher Husted, David C. Henderson, Yangfei Xiang, In‐Hyun Park, Lindsay A. Farrer, Huiping Zhang
Software Mentions: 1
Published: about 3 years ago
10.1093/treephys/tpw017
Adaptive mechanisms and genomic plasticity for drought tolerance identified in European black poplar (<i>Populus nigra</i>L.)
Cited by: 48
Author(s): Maud Viger, Helen K. Smith, David Cohen, J. Andrew DeWoody, Harriet Trewin, Marijke Steenackers, Catherine Bastien, Gail Taylor
Software Mentions: 1
Published: over 8 years ago
10.1016/j.tube.2020.102033
Host transcriptional response to TB preventive therapy differentiates two sub-groups of IGRA-positive individuals
Cited by: 11
Author(s): Claire Broderick, Jacqueline M. Cliff, Ji-Sook Lee, Myrsini Kaforou, David Moore
Software Mentions: 1
Published: over 3 years ago
10.18632/aging.101184
Longitudinal study of surrogate aging measures during human immunodeficiency virus seroconversion
Cited by: 28
Author(s): Janice M. Leung, Nick Fishbane, Meaghan J. Jones, Alexander M. Morin, Stella Xu, Joseph Cy Liu, Julie L. MacIsaac, M‐J Milloy, Kanna Hayashi, Julio S. G. Montaner, Steve Horvath, Michæl S. Kobor, Don D. Sin, P. Richard Harrigan, SF Paul Man
Software Mentions: 1
Published: almost 8 years ago
10.4274/tjh.galenos.2020.2020.0144
LEF1 Induces DHRS2 Gene Expression in Human Acute Leukemia Jurkat T-Cells
Cited by: 1
Author(s): Sema Sırma Ekmekçi, Zeliha Emrence, Neslihan Abacı, Melda Sarıman, Burcu Salman, Cumhur Gökhan Ekmekçi, Çağrı Güleç
Software Mentions: 1
Published: about 4 years ago
10.1186/s12920-021-01087-7
Integrated bioinformatics analysis of core regulatory elements involved in keloid formation
Cited by: 4
Author(s): Chuying Li, Mei-Tong Jin, Yinli Luo, Zhehu Jin, Long-Quan Pi
Software Mentions: 1
Published: about 3 years ago
10.1186/s12920-015-0103-3
Integrated genomics has identified a new AT/RT-like yet INI1-positive brain tumor subtype among primary pediatric embryonal tumors
Cited by: 14
Author(s): Donald Ming Tak Ho, Chuan Chi Shih, Muh Lii Liang, Chan Yen Tsai, Tsung Han Hsieh, Chin Han Tsai, Shih Chieh Lin, Ting Chang, Meng En Chao, Hsei Wei Wang, Tai-Tong Wong
Software Mentions: 1
Published: over 9 years ago
10.1002/advs.202000704
Polymyxins Bind to the Cell Surface of Unculturable <i>Acinetobacter baumannii</i> and Cause Unique Dependent Resistance
Cited by: 29
Author(s): Yan Zhu, Jing Lü, Mei‐Ling Han, Xukai Jiang, Mohammad Abul Kalam Azad, Nitin A. Patil, Lin Ye, Jinxin Zhao, Yang Hu, Heidi H. Yu, Ke Chen, John D. Boyce, Rhys A. Dunstan, Trevor Lithgow, Christopher K. Barlow, Weifeng Liu, Elena K. Schneider‐Futschik, Jiping Wang, Bin Gong, Björn Sommer, Darren J. Creek, Jing Fu, Lushan Wang, Falk Schreiber, Tony Velkov, Jian Li
Software Mentions: 1
Published: over 4 years ago
10.1186/1755-8794-6-41
Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker
Cited by: 49
Author(s): Intawat Nookaew, Kaisa Thorell, Kuntal Worah, Shugui Wang, Martin L. Hibberd, Henrik Sjövall, Sven Pettersson, Jens Nielsen, Samuel Lundin
Software Mentions: 1
Published: about 11 years ago
10.1186/1755-8794-7-13
Childhood abuse is associated with methylation of multiple loci in adult DNA
Cited by: 147
Author(s): Matthew Suderman, Nada Borghol, Jane J. Pappas, Snehal M Pinto Pereira, Marcus Pembrey, Clyde Hertzman, Chris Power, Moshe Szyf
Software Mentions: 1
Published: over 10 years ago
10.1128/mBio.00342-18
Interleukin-1β Signaling in Dendritic Cells Induces Antiviral Interferon Responses
Cited by: 46
Author(s): Lauren Aarreberg, Courtney Wilkins, Hilario J. Ramos, Richard Green, Michael A. Davis, Kwan T. Chow, Michael Gale
Software Mentions: 1
Published: over 6 years ago
10.1186/1755-8794-6-42
Gene profiling suggests a common evolution of bladder cancer subtypes
Cited by: 8
Author(s): Donna E. Hansel, Zhongfa Zhang, David Petillo, Bin Tean Teh
Software Mentions: 1
Published: about 11 years ago
10.1186/s12920-020-00744-7
Long non-coding RNA profiling of pediatric Medulloblastoma
Cited by: 14
Author(s): Varun Kesherwani, Mamta Shukla, Donald W. Coulter, John Sharp, Shantaram S. Joshi, Nagendra K. Chaturvedi
Software Mentions: 1
Published: over 4 years ago
10.1128/mBio.02778-19
Ubiquitination of <i>Listeria</i> Virulence Factor InlC Contributes to the Host Response to Infection
Cited by: 9
Author(s): Edith Gouin, Damien Balestrino, Orhan Rasid, Marie–Anne Nahori, Véronique Villiers, Francis Impens, Stevenn Volant, Thomas Vogl, Yves Jacob, Olivier Dussurget, Pascale Cossart
Software Mentions: 1
Published: almost 5 years ago
10.1128/mBio.02512-19
Comparative Genomics for the Elucidation of Multidrug Resistance in Candida lusitaniae
Cited by: 31
Author(s): Abhilash Kannan, Sandra Asner, Emilie Trachsel, Steven L. Kelly, Josie E. Parker, Dominique Sanglard
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12920-021-00918-x
Integrated analysis of lncRNA–miRNA–mRNA ceRNA network and the potential prognosis indicators in sarcomas
Cited by: 15
Author(s): Lu Gao, Yu Zhao, Xuelei Ma, Ling Zhang
Software Mentions: 1
Published: over 3 years ago
10.1186/s12920-020-00795-w
Identification of key genes and functions of circulating tumor cells in multiple cancers through bioinformatic analysis
Cited by: 8
Author(s): Yawen Guan, Fangshi Xu, Yiyuan Wang, Jie Tian, Ziyan Wan, Zhenlong Wang, Tie Chong
Software Mentions: 1
Published: about 4 years ago
10.1128/mBio.00948-20
A Chemical Counterpunch: Chromobacterium violaceum ATCC 31532 Produces Violacein in Response to Translation-Inhibiting Antibiotics
Cited by: 19
Author(s): Gabriel L. Lozano, Changhui Guan, Yanzhuan Cao, Bradley R. Borlee, Nichole A. Broderick, Eric V. Stabb, Jo Handelsman
Software Mentions: 1
Published: over 4 years ago
10.1128/mBio.01911-20
Genotoxic Effect of <i>Salmonella</i> Paratyphi A Infection on Human Primary Gallbladder Cells
Cited by: 14
Author(s): Ludovico P Sepe, Kimberly Hartl, Amina Iftekhar, Hilmar Berger, Naveen Kumar, Christian Goosmann, Sascha Chopra, Sven Schmidt, Rajendra Kumar Gurumurthy, Thomas F. Meyer, Francesco Boccellato
Software Mentions: 1
Published: about 4 years ago
10.1128/mBio.03374-20
A Novel Trichomonas vaginalis Surface Protein Modulates Parasite Attachment via Protein:Host Cell Proteoglycan Interaction
Cited by: 6
Author(s): Brenda M. Molgora, Anand Kumar, Michael J. Sweredoski, Annie Moradian, Sonja Hess, Patricia J. Johnson
Software Mentions: 1
Published: almost 4 years ago
10.18632/oncotarget.26370
Limitations of current <i>in vitro</i> models for testing the clinical potential of epigenetic inhibitors for treatment of pediatric ependymoma
Cited by: 7
Author(s): Hazel A. Rogers, Rebecca Chapman, Holly Kings, Julie Allard, Jodie Barron-Hastings, Kristian W. Pajtler, Martin Sill, Stefan M. Pfister, Richard G. Grundy
Software Mentions: 1
Published: about 6 years ago
10.1186/1755-8794-5-46
Defining the genomic signature of the parous breast
Cited by: 63
Author(s): Suraj Peri, Ricardo López de Cicco, Julia Santucci-Pereira, Michael Slifker, Eric A. Ross, Irma H. Russo, Patrícia A. Russo, Alan A. Arslan, Ilana Belitskaya-Lévy, Anne Zeleniuch‐Jacquotte, Pál Bordás, Per Lenner, Janet Åhman, Yelena Afanasyeva, Robert Johansson, Fathima Sheriff, Göran Hallmans, Paolo Toniolo, José Russo
Software Mentions: 1
Published: about 12 years ago
10.1128/mBio.01572-21
Unfolded Protein Response Inhibition Reduces Middle East Respiratory Syndrome Coronavirus-Induced Acute Lung Injury
Cited by: 14
Author(s): Amy C. Sims, Hugh D. Mitchell, Lisa E. Gralinski, Jennifer Kyle, Kristin Burnum-Johnson, Mariam Lam, M. Leslie Fulcher, Ande West, Richard Smith, Scott H. Randell, Thomas O. Metz, Timothy P. Sheahan, Katrina M. Waters, Ralph S. Baric
Software Mentions: 1
Published: about 3 years ago
10.1128/mBio.01247-21
Plasmodium vivax Infection Alters Mitochondrial Metabolism in Human Monocytes
Cited by: 2
Author(s): Suelen Queiroz Diniz, Andréa Teixeira-Carvalho, María Marta Figueiredo, Pedro Augusto Carvalho Costa, Bruno Coelho Rocha, Olindo Assis Martins‐Filho, Ashley Goncalves, Dhélio Batista Pereira, Mauro Shugiro Tada, Fabiano Oliveira, Ricardo T. Gazzinelli, Lis Ribeiro do Valle Antonelli
Software Mentions: 1
Published: about 3 years ago
10.1128/mSphere.00119-16
Transcriptomic Analysis of the Activity of a Novel Polymyxin against Staphylococcus aureus
Cited by: 13
Author(s): Jinxin Zhao, Soon-Ee Cheah, Kade D. Roberts, Roger L. Nation, Phillip E. Thompson, Tony Velkov, Zong‐Jun Du, Matthew D. Johnson, Jian Li
Software Mentions: 1
Published: about 8 years ago
10.1186/1755-8794-4-86
Early peroxisome proliferator-activated receptor gamma regulated genes involved in expansion of pancreatic beta cell mass
Cited by: 16
Author(s): Yurena Vivas, Cristina Martínez‐García, Alberto Galindo Izquierdo, Francisco García‐García, Sergio Callejas, Ismael Velasco, Mark Campbell, Manuel Ros, Ana Dopazo, Joaquín Dopazo, António Vidal-Puig, Gema Medina-Gómez
Software Mentions: 1
Published: almost 13 years ago
10.1186/s12920-015-0100-6
Blood-based identification of non-responders to anti-TNF therapy in rheumatoid arthritis
Cited by: 26
Author(s): Timothy M. Thomson, Reynald Lescarbeau, David A. Drubin, Daphna Laifenfeld, David de Graaf, David A. Fryburg, Bruce H. Littman, Renée Deehan, A. Van Hooser
Software Mentions: 1
Published: over 9 years ago
10.1186/s12920-021-00885-3
A novel prognostic prediction model based on seven immune-related RNAs for predicting overall survival of patients in early cervical squamous cell carcinoma
Cited by: 7
Author(s): Rui Qin, Lu Cao, Cong Ye, Junrong Wang, Ziqian Sun
Software Mentions: 1
Published: almost 4 years ago
10.18632/aging.101319
Towards natural mimetics of metformin and rapamycin
Cited by: 67
Author(s): Alexander Aliper, Leslie C. Jellen, Filomeno Cortese, Artemov Av, Darla Karpinsky-Semper, Alexey Moskalev, Andrew G. Swick, Alex Zhavoronkov
Software Mentions: 1
Published: about 7 years ago
10.18632/aging.202320
Identification of the ceRNA networks in α-MSH-induced melanogenesis of melanocytes
Cited by: 12
Author(s): Ling Jiang, Jinhua Huang, Yibo Hu, Lei Li, Yujie Ouyang, Yan Liu, Hui Li, Si Li, Lun Yang, Yan Yang, Lihua Huang, Hong Xiang, Rong Xiao, Jing Chen, Qinghai Zeng
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12881-019-0829-4
Assessment of risk based on variant pathways and establishment of an artificial neural network model of thyroid cancer
Cited by: 6
Author(s): Yupei Zhao, Lingzhi Zhao, Tiezhu Mao, Lili Zhong
Software Mentions: 1
Published: over 5 years ago
10.18632/oncotarget.26776
The transcriptomic response to irinotecan in colon carcinoma bearing mice preconditioned by fasting
Cited by: 5
Author(s): F. Jongbloed, Sander A. Huisman, Harry van Steeg, Jeroen L. A. Pennings, Jan N.M. IJzermans, Martijn E.T. Dollé, Ron W. F. de Bruin
Software Mentions: 1
Published: over 5 years ago
10.1021/acschemneuro.1c00303
Wide-Ranging Effects on the Brain Proteome in a Transgenic Mouse Model of Alzheimer’s Disease Following Treatment with a Brain-Targeting Somatostatin Peptide
Cited by: 10
Author(s): Fadi Rofo, Friederike Andrea Sandbaumhüter, Aikaterini Chourlia, Nicole G. Metzendorf, Jamie I. Morrison, Stina Syvänen, Per E. Andrén, Erik T. Jansson, Greta Hultqvist
Software Mentions: 1
Published: over 3 years ago
10.18632/aging.103460
Comprehensive characterization of the tumor microenvironment for assessing immunotherapy outcome in patients with head and neck squamous cell carcinoma
Cited by: 6
Author(s): Jian Zhang, Xi Zhong, Huali Jiang, Hualong Jiang, Tao Xie, Yunhong Tian, Rong Li, Baiyao Wang, Jiexia Zhang, Yawei Yuan
Software Mentions: 1
Published: about 4 years ago
10.1186/1741-7015-6-14
miR-124 and miR-137 inhibit proliferation of glioblastoma multiforme cells and induce differentiation of brain tumor stem cells
Cited by: 831
Author(s): Joachim Silber, Daniel A. Lim, Claudia Petritsch, Anders I. Persson, Alika K. Maunakea, Mamie Yu, Scott R. VandenBerg, David G. Ginzinger, C. David James, J Costello, Gabriele Bergers, William A. Weiss, Arturo Alvarez-Buylla, J. Graeme Hodgson
Software Mentions: 1
Published: over 16 years ago
10.1186/s12916-016-0710-7
Spatial transcriptome analysis reveals Notch pathway-associated prognostic markers in IDH1 wild-type glioblastoma involving the subventricular zone
Cited by: 31
Author(s): Christine Jungk, Andreas Möck, Janina Exner, Christoph Geisenberger, Rolf Warta, David Capper, Amir Abdollahi, Sara Friauf, Bernd Lahrmann, Niels Grabe, Philipp Beckhove, Andreas von Deimling, Andreas Unterberg, Christel Herold‐Mende
Software Mentions: 1
Published: about 8 years ago
10.1186/s12879-020-05335-6
Gene network in pulmonary tuberculosis based on bioinformatic analysis
Cited by: 8
Author(s): Lili Li, Jian Lv, Yuan He, Zhihua Wang
Software Mentions: 1
Published: over 4 years ago
10.1186/s12879-016-1822-6
Identification potential biomarkers in pulmonary tuberculosis and latent infection based on bioinformatics analysis
Cited by: 11
Author(s): Xu‐Jie Qin, Wei-Jue Zhang, Lin Zou, Pei-Jia Huang, Beicheng Sun
Software Mentions: 1
Published: about 8 years ago
10.1186/1471-2334-13-371
Nucleotide-binding oligomerization domain containing-like receptor family, caspase recruitment domain (CARD) containing 4 (NLRC4) regulates intrapulmonary replication of aerosolized Legionella pneumophila
Cited by: 9
Author(s): William R. Berrington, Kelly D. Smith, Shawn J. Skerrett, Thomas R. Hawn
Software Mentions: 1
Published: over 11 years ago
10.1186/1479-7364-8-10
Novel age-dependent targets in vestibular schwannomas
Cited by: 4
Author(s): Amos Toren, Juergen K.V. Reichardt, Ali Andalibi, Nancy Hsu, Joni K. Doherty, William H. Slattery, Ruty Mehrian‐Shai
Software Mentions: 1
Published: over 10 years ago
10.1186/1471-2172-11-39
Changes in colon gene expression associated with increased colon inflammation in interleukin-10 gene-deficient mice inoculated with Enterococcus species
Cited by: 51
Author(s): Matthew P. G. Barnett, Warren C. McNabb, Adrian L. Cookson, Shuotun Zhu, Marcus Davy, Bianca Knoch, Kátia Nones, Alison J. Hodgkinson, Nicole C. Roy
Software Mentions: 1
Published: almost 15 years ago
10.1186/1479-7364-7-2
Gene selection and cancer type classification of diffuse large-B-cell lymphoma using a bivariate mixture model for two-species data
Cited by: 9
Author(s): Yongxuan Su, Dahlia M. Nielsen, Lei Zhu, Kristy L. Richards, Steven E. Suter, Matthew Breen, Alison A. Motsinger‐Reif, Jason A. Osborne
Software Mentions: 1
Published: almost 12 years ago
10.1186/1471-2172-12-41
Anti-inflammatory effects of tetradecylthioacetic acid (TTA) in macrophage-like cells from Atlantic salmon (Salmo salar L.)
Cited by: 3
Author(s): Fabian Grammes, Harald Takle
Software Mentions: 1
Published: over 13 years ago
10.1186/1471-2164-12-437
A eukaryotic-type signalling system of Pseudomonas aeruginosa contributes to oxidative stress resistance, intracellular survival and virulence
Cited by: 42
Author(s): Jana Goldová, Aleš Ulrych, Kamil Hercík, Pavel Branný
Software Mentions: 1
Published: about 13 years ago
10.1080/21623945.2020.1795434
Integrative analyses of biomarkers and pathways for adipose tissue after bariatric surgery
Cited by: 17
Author(s): Yingshan Liu, Jing Jin, Yanshan Chen, Chuna Chen, Zhenguo Chen, Lingling Xu
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12864-017-3518-8
Melanoma genome evolution across species
Cited by: 12
Author(s): Emily R. Kansler, Akanksha Verma, Erin M. Langdon, Theresa Simon-Vermot, Alexandra Yin, William Lee, Marc A. Attiyeh, Olivier Elemento, Richard M. White
Software Mentions: 1
Published: almost 8 years ago
10.1161/HYPERTENSIONAHA.121.17396
Influence of Maternal Lifestyle and Diet on Perinatal DNA Methylation Signatures Associated With Childhood Arterial Stiffness at 8 to 9 Years
Cited by: 9
Author(s): Robert Murray, Negusse Tadesse Kitaba, Elie Antoun, Philip Titcombe, Sheila J. Barton, Cyrus Cooper, Hazel Inskip, Graham C. Burdge, Pamela Mahon, John Deanfield, Julian Halcox, Elizabeth A Ellins, Jennifer Bryant, Charles Peebles, Karen A. Lillycrop, Keith M. Godfrey, Mark A. Hanson
Software Mentions: 1
Published: about 3 years ago
10.18632/aging.102857
Adipose-derived mesenchymal stem cells-derived exosome-mediated microRNA-342-5p protects endothelial cells against atherosclerosis
Cited by: 52
Author(s): Xiaohui Xing, Zhongchen Li, Xin Yang, Mengyou Li, Chao Liu, Yingxin Pang, Zhang Liyong, Xueyuan Li, Guangcun Liu, Yi Xiao
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2164-11-269
High-throughput marker discovery in melon using a self-designed oligo microarray
Cited by: 12
Author(s): Ron Ophir, Ravit Eshed, Rotem Harel-Beja, Galil Tzuri, Vitaly Portnoy, Y. Burger, Shai Uliel, Nurit Katzir, Amir Sherman
Software Mentions: 1
Published: over 14 years ago
10.1186/s12864-016-3068-5
Dysregulation of mitotic machinery genes precedes genome instability during spontaneous pre-malignant transformation of mouse ovarian surface epithelial cells
Cited by: 10
Author(s): Ulises Urzúa, Sandra Ampuero, Katherine F. Roby, Garrison A. Owens, David J. Munroe
Software Mentions: 1
Published: about 8 years ago
10.7150/ijbs.57338
MiR-17-5p and MKL-1 modulate stem cell characteristics of gastric cancer cells
Cited by: 6
Author(s): Zhou-Tong Dai, Xiang Yuan, Yuanyuan Duan, Jun Wang, Jia Peng Li, Huimin Zhang, Chao Cheng, Qiong Wang, Tongcun Zhang, Xing–Hua Liao
Software Mentions: 1
Published: almost 4 years ago
10.7150/ijbs.59019
NEK2 plays an active role in Tumorigenesis and Tumor Microenvironment in Non-Small Cell Lung Cancer
Cited by: 10
Author(s): Rui Bai, Cheng Yuan, Wenjie Sun, Jianguo Zhang, Yuan Luo, Yanping Gao, Yangyi Li, Yan Gong, Conghua Xie
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12967-019-2103-0
The clinical characteristics and molecular mechanism of pituitary adenoma associated with meningioma
Cited by: 7
Author(s): Haibo Zhu, Yun‐gen Miao, Yutao Shen, Jing Guo, Weiyan Xie, Sida Zhao, Wei Dong, Yazhou Zhang, Chuzhong Li
Software Mentions: 1
Published: about 5 years ago
10.1186/1471-2164-9-376
Novel functional view of the crocidolite asbestos-treated A549 human lung epithelial transcriptome reveals an intricate network of pathways with opposing functions
Cited by: 23
Author(s): Joan M. Hevel, Laura C Olson-Buelow, Balasubramanian Ganesan, John R. Stevens, Jared P Hardman, Ann E. Aust
Software Mentions: 1
Published: almost 17 years ago
10.1186/1471-2164-9-298
The trypanosome transcriptome is remodelled during differentiation but displays limited responsiveness within life stages
Cited by: 91
Author(s): Vassiliki Lila Koumandou, Senthil Kumar Natesan, Tatiana Sergeenko, Mark C. Field
Software Mentions: 1
Published: over 16 years ago
10.18632/aging.102111
Genetic polymorphisms and transcription profiles associated with intracranial aneurysm: a key role for NOTCH3
Cited by: 2
Author(s): Mengqi Li, Xinlong Dong, Shi Chen, Weihan Wang, Chao Yang, Bochuan Li, Degang Liang, Weidong Yang, Xiaozhi Liu, Xinyu Yang
Software Mentions: 1
Published: over 5 years ago
10.7150/ijbs.54074
KIF11 promotes cell proliferation via ERBB2/PI3K/AKT signaling pathway in gallbladder cancer
Cited by: 21
Author(s): Wei Dang, Rui Bian, Fan Qingquan, Chen Cai, Hu Ping, Song Xiaoling, Hao Wu, Gu J
Software Mentions: 1
Published: almost 4 years ago
10.1186/1471-2164-12-216
Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells
Cited by: 161
Author(s): Rui-Sheng Wang, Sona Pandey, Li Song, Timothy E. Gookin, Zhixin Zhao, Réka Albert, Sarah M. Assmann
Software Mentions: 1
Published: over 13 years ago
10.1186/1756-9966-31-68
Molecular markers associated with outcome and metastasis in human pancreatic cancer
Cited by: 63
Author(s): Ann Van den Broeck, Hugo Vankelecom, Rudy van Eijsden, Olivier Govaere, Baki Topal
Software Mentions: 1
Published: about 12 years ago
10.1186/s13046-016-0283-5
The leukemogenic fusion gene MLL-AF9 alters microRNA expression pattern and inhibits monoblastic differentiation via miR-511 repression
Cited by: 12
Author(s): Katrin K. Fleischmann, Philipp Pagel, Julia von Frowein, Thomas Magg, Adelbert A. Roscher, Irene Schmid
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13046-017-0614-1
circGFRA1 and GFRA1 act as ceRNAs in triple negative breast cancer by regulating miR-34a
Cited by: 261
Author(s): Rongfang He, Peng Liu, Xiaoming Xie, Yujuan Zhou, Qianjin Liao, Wei Xiong, Xiaoling Li, Guiyuan Li, Zhaoyang Zeng
Software Mentions: 1
Published: about 7 years ago
10.1186/s13046-018-0838-8
circFBLIM1 act as a ceRNA to promote hepatocellular cancer progression by sponging miR-346
Cited by: 119
Author(s): Ning Bai, Eming Peng, Xingsheng Qiu, Ning Lyu, Zhejia Zhang, Yiming Tao, Xinying Li, Zhiming Wang
Software Mentions: 1
Published: over 6 years ago
10.1186/s13046-018-0953-6
EBV-miR-BART8-3p induces epithelial-mesenchymal transition and promotes metastasis of nasopharyngeal carcinoma cells through activating NF-κB and Erk1/2 pathways
Cited by: 62
Author(s): Cheng Lin, Jingfeng Zong, Wei Lin, Minghui Wang, Yujin Xu, Rui Zhou, Lin Shen, Qiaojuan Guo, Honglin Chen, Yunbin Ye, Bin Zhang, Jianji Pan
Software Mentions: 1
Published: almost 6 years ago
10.1186/1471-2164-12-602
Muscle wasting and the temporal gene expression pattern in a novel rat intensive care unit model
Cited by: 61
Author(s): Monica Llano‐Diez, Ann-Marie Gustafson, Carl A. Olsson, Hanna Göransson, Lars Larsson
Software Mentions: 1
Published: almost 13 years ago
10.1186/s12864-017-3547-3
An integrative metabolomics and transcriptomics study to identify metabolic alterations in aged skin of humans in vivo
Cited by: 46
Author(s): Andreas Kuehne, Janosch Hildebrand, Joern Soehle, Horst Wenck, Lara Terstegen, Stefan Gallinat, Anja Knott, Marc Winnefeld, Nicola Zamboni
Software Mentions: 1
Published: almost 8 years ago
10.1186/1471-2164-8-17
Normalization of low-density microarray using external spike-in controls: analysis of macrophage cell lines expression profile
Cited by: 10
Author(s): Paolo Fardin, Stefano Moretti, Barbara Biasotti, Annamaria Ricciardi, Stefano Bonassi, Luigi Varesio
Software Mentions: 1
Published: almost 18 years ago
10.1186/1471-2164-15-1018
Dissecting the organ specificity of insecticide resistance candidate genes in Anopheles gambiae: known and novel candidate genes
Cited by: 52
Author(s): Victoria A. Ingham, Christopher M. Jones, Pasquale Pignatelli, Vasileia Balabanidou, John Vontas, Simon C. Wagstaff, Jonathan D. Moore, Hilary Ranson
Software Mentions: 1
Published: almost 11 years ago
10.1186/s13046-019-1313-x
Macrophage-derived exosomal microRNA-501-3p promotes progression of pancreatic ductal adenocarcinoma through the TGFBR3-mediated TGF-β signaling pathway
Cited by: 187
Author(s): Zi Yin, Tingting Ma, Bowen Huang, Lehang Lin, Yu Zhou, Jinhai Yan, Yiping Zou, Sheng Chen
Software Mentions: 1
Published: over 5 years ago
10.1186/1471-2164-14-527
Dissecting the psoriasis transcriptome: inflammatory- and cytokine-driven gene expression in lesions from 163 patients
Cited by: 107
Author(s): William R. Swindell, Andrew Johnston, John J. Voorhees, James T. Elder, Jóhann E. Guðjónsson
Software Mentions: 1
Published: almost 12 years ago
10.1186/s13046-019-1491-6
miR-624-5p promoted tumorigenesis and metastasis by suppressing hippo signaling through targeting PTPRB in osteosarcoma cells
Cited by: 34
Author(s): Yi Luo, Wei Liu, Pengyu Tang, Dongdong Jiang, Changjiang Gu, Yu‐Min Huang, Fangyi Gong, Yuluo Rong, Dingfei Qian, Jian Chen, Zheng Zhou, Shujie Zhao, Jiaxing Wang, Tan Xu, Yongzhong Wei, Guoyong Yin, Jin Fan, Wei Cai
Software Mentions: 1
Published: almost 5 years ago
10.1186/s13046-019-1507-2
Exosome-mediated transfer of miR-93-5p from cancer-associated fibroblasts confer radioresistance in colorectal cancer cells by downregulating FOXA1 and upregulating TGFB3
Cited by: 79
Author(s): Xijuan Chen, Junqi Liu, Qinglan Zhang, Baoxing Liu, Yan Cheng, Yonglei Zhang, Yanan Sun, Hong Ge, Yingqiang Liu
Software Mentions: 1
Published: over 4 years ago
10.18632/aging.203158
Comprehensive signature analysis of drug metabolism differences in the White, Black and Asian prostate cancer patients
Cited by: 8
Author(s): Liu Yang, Jiawei Zhou, Cundong Liu, Jing Yang, De-Ying Liao, Zhen Liang, Xiao Xie, Qing Zhou, Kai Xue, Wenbing Guo, Ming Xia, Jiaju Zhou, Junjie Bao, Cheng Yang, Haifeng Duan, Hongyi Wang, Zhipeng Huang, Shan‐Chao Zhao, Ming-Kun Chen
Software Mentions: 1
Published: over 3 years ago
10.1186/s13046-020-01631-w
Human umbilical cord mesenchymal stem cells-derived exosomes deliver microRNA-375 to downregulate ENAH and thus retard esophageal squamous cell carcinoma progression
Cited by: 59
Author(s): Zhao He, Weihao Li, Tianliang Zheng, Donglei Liu, Song Zhao
Software Mentions: 1
Published: over 4 years ago
10.18632/oncotarget.27844
Differential gene expression in cisplatin-resistant and -sensitive testicular germ cell tumor cell lines
Cited by: 6
Author(s): Jan Roška, Lenka Wachsmannová, Lenka Hurbanová, Zuzana Šestáková, Thomas Mueller, Dana Jurkovičová, Miroslav Chovanec
Software Mentions: 1
Published: almost 4 years ago
10.1186/1471-2164-11-414
ChIP on Chip: surprising results are often artifacts
Cited by: 65
Author(s): Torsten Waldminghaus, Kirsten Skarstad
Software Mentions: 1
Published: almost 15 years ago
10.1186/s13046-020-01750-4
Loss of PLK2 induces acquired resistance to temozolomide in GBM via activation of notch signaling
Cited by: 17
Author(s): Alafate Wahafu, Dongze Xu, Wei Wu, Jianyang Xiang, Xudong Ma, Wei Xie, Xia Bai, Maode Wang, Jia Wang
Software Mentions: 1
Published: about 4 years ago
10.1186/s12967-021-03050-7
GSK2126458 has the potential to inhibit the proliferation of pancreatic cancer uncovered by bioinformatics analysis and pharmacological experiments
Cited by: 9
Author(s): Yangyang Feng, Yuguan Jiang, Hao Fang
Software Mentions: 1
Published: about 3 years ago
10.1186/s13046-020-01819-0
Lnc-GAN1 expression is associated with good survival and suppresses tumor progression by sponging mir-26a-5p to activate PTEN signaling in non-small cell lung cancer
Cited by: 14
Author(s): Ruiqi Wang, Xueying Long, Ningning Zhou, Dongni Chen, Mei‐Yin Zhang, Zhesheng Wen, Lanjun Zhang, Fazhong He, Zongqing Zhou, Shi-Juan Mai, Huiyun Wang
Software Mentions: 1
Published: almost 4 years ago
10.1186/1471-2164-13-243
The genes and enzymes of the carotenoid metabolic pathway in Vitis vinifera L.
Cited by: 109
Author(s): Philip R. Young, Justin Graham Lashbrooke, Erik Alexandersson, Dan Jacobson, C. Moser, Riccardo Velasco, Melané A. Vivier
Software Mentions: 1
Published: over 12 years ago
10.1186/1471-2164-11-235
Plasmodium falciparum spermidine synthase inhibition results in unique perturbation-specific effects observed on transcript, protein and metabolite levels
Cited by: 29
Author(s): John Vw Becker, Linda Mtwisha, Bridget Genevieve Crampton, Stoyan Stoychev, Anna C. van Brummelen, Shaun Reeksting, Abraham I. Louw, Lyn‐Marié Birkholtz, D Mancama
Software Mentions: 1
Published: over 14 years ago
10.1186/s13046-021-01928-4
Novel LncRNA OXCT1-AS1 indicates poor prognosis and contributes to tumorigenesis by regulating miR-195/CDC25A axis in glioblastoma
Cited by: 18
Author(s): Zhong Chen, Qian Yu, Yucong Peng, Shanshan Zhou, Zhendong Liu, Yong Deng, Leiguang Guo, Shen Zhao, Gao Chen
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-9-474
Differential gene expression profiles are dependent upon method of peripheral blood collection and RNA isolation
Cited by: 88
Author(s): Adam Asare, Svetlana A Kolchinsky, Gongxun Zhong, Thomas J. Wang, Khadir Raddassi, Katarzyna Bourcier, Vicki Seyfert-Margolis
Software Mentions: 1
Published: about 16 years ago
10.1186/s13046-021-02027-0
Circular RNA circ_001422 promotes the progression and metastasis of osteosarcoma via the miR-195-5p/FGF2/PI3K/Akt axis
Cited by: 49
Author(s): Bo Yang, Lutao Li, Tong Ge, Zhirui Zeng, Jianye Tan, Zexin Su, Zhengwei Liu, Jiezhao Lin, Wenwen Gao, Jianping Chen, Sisi Zeng, Guofeng Wu, Lin Li, Shuang Zhu, Qiuzhen Liu, Lin Li
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-018-4518-z
Identification of placental nutrient transporters associated with intrauterine growth restriction and pre-eclampsia
Cited by: 57
Author(s): Xiao Huang, Pascale Anderle, Lu Hostettler, Marc Baumann, Daniel Surbek, Edgar Ontsouka, Christiane Albrecht
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2164-13-76
Sexual and asexual oogenesis require the expression of unique and shared sets of genes in the insect Acyrthosiphon pisum
Cited by: 33
Author(s): Aurore Gallot, Shuji Shigenobu, Tomomi Hashiyama, Stéphanie Jaubert-Possamai, Denis Tagu
Software Mentions: 1
Published: almost 13 years ago
10.18632/aging.104195
Exploring the mechanism of resistance to sorafenib in two hepatocellular carcinoma cell lines
Cited by: 2
Author(s): Zhang Zhi, Cheng-Zu He, Yaqin Qin, Jianjun Liao, Shang-Tao Huang, Steven Mo, Hong-Mian Li, Jian Lin
Software Mentions: 1
Published: about 4 years ago
10.1084/jem.20181778
TCF-1 limits the formation of Tc17 cells via repression of the MAF–RORγt axis
Cited by: 43
Author(s): Lisa A. Mielke, Yang Liao, E. Bridie Clemens, Matthew A. Firth, Brigette C. Duckworth, Qiutong Huang, Francisca F. Almeida, Michaël Chopin, Hui-Fern Koay, Carolyn A. Bell, Soroor Hediyeh-Zadeh, Simone L. Park, Dinesh Raghu, Jarny Choi, Tracy L. Putoczki, Philip D. Hodgkin, Ashley E. Franks, Laura K. Mackay, Dale I. Godfrey, Melissa J. Davis, Hai-Hui Xue, Vanessa L. Bryant, Katherine Kedzierska, Wei Shi, Gabrielle T. Belz
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-016-2580-y
Prediction of hybrid performance in maize with a ridge regression model employed to DNA markers and mRNA transcription profiles
Cited by: 26
Author(s): Carola Zenke-Philippi, Alexander Thiemann, Felix Seifert, Tobias A. Schrag, Albrecht E. Melchinger, Stefan Scholten, Matthias Frisch
Software Mentions: 1
Published: over 8 years ago
10.1186/s12864-021-07994-4
Spatial variation in gene expression of Tasmanian devil facial tumors despite minimal host transcriptomic response to infection
Cited by: 3
Author(s): Christopher P. Kozakiewicz, Alexandra K. Fraik, Austin H. Patton, Manuel Ruiz‐Aravena, David G. Hamilton, Rodrigo Hamede, Hamish McCallum, Paul A. Hohenlohe, Mark J. Margres, Matthew T. Jones, Andrew Storfer
Software Mentions: 1
Published: about 3 years ago
10.1186/s12864-016-3458-8
CNVs into the wild: screening the genomes of conifer trees (Picea spp.) reveals fewer gene copy number variations in hybrids and links to adaptation
Cited by: 27
Author(s): Julien Prunier, S. Caron, John Mackay
Software Mentions: 1
Published: almost 8 years ago
10.1186/1471-2164-11-6
An evolutionary consequence of dosage compensation on Drosophila melanogaster female X-chromatin structure?
Cited by: 35
Author(s): Yu Zhang, Brian Oliver
Software Mentions: 1
Published: almost 15 years ago
10.1186/s12864-018-5220-x
RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database
Cited by: 19
Author(s): Pierre R. Bushel, Florian Caiment, Han Wu, Raegan O’Lone, Frank Day, John N. Calley, Aaron T. Smith, Jianying Li
Software Mentions: 1
Published: about 6 years ago
10.1186/1471-2164-13-173
Genome-wide expression profiling shows transcriptional reprogramming in Fusarium graminearum by Fusarium graminearum virus 1-DK21 infection
Cited by: 33
Author(s): Won Kyong Cho, Jisuk Yu, Kyung-Mi Lee, Moonil Son, Kyung-Hee Min, Yin-Won Lee, Kook‐Hyung Kim
Software Mentions: 1
Published: over 12 years ago