bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1093/ibd/izx061

The Impact of NOD2 Variants on Fecal Microbiota in Crohn’s Disease and Controls Without Gastrointestinal Disease
Cited by: 36
Author(s): Nicholas A Kennedy, Christopher A Lamb, Susan H. Berry, Alan W. Walker, John C. Mansfield, Miles Parkes, Rachel Simpkins, Mark Tremelling, Sarah Nutland, Julian Parkhill, Chris Probert, Georgina L. Hold, Charlie W Lees
Software Mentions: 1
Published: almost 7 years ago

10.1111/j.1365-2583.2006.00678.x

Towards a molecular definition of worker sterility: differential gene expression and reproductive plasticity in honey bees
Cited by: 47
Author(s): Graham Thompson, Robert Kucharski, Ryszard Maleszka, Benjamin P. Oldroyd
Software Mentions: 1
Published: about 18 years ago

10.1002/jbm4.10050

Molecular Phenotyping of Telomerized Human Bone Marrow Skeletal Stem Cells Reveals a Genetic Program of Enhanced Proliferation and Maintenance of Differentiation Responses
Cited by: 20
Author(s): Natalie A. Twine, Linda Harkness, James Adjaye, Abdullah Aldahmash, Marc R. Wilkins, Moustapha Kassem
Software Mentions: 1
Published: over 6 years ago

10.1002/jbm4.10465

<scp>EphA2</scp> Is a Clinically Relevant Target for Breast Cancer Bone Metastatic Disease
Cited by: 1
Author(s): David Vaught, Alyssa R. Merkel, Conor C. Lynch, James Edwards, Mohammed Noor Tantawy, Timothy Hilliard, Shan Wang, Todd E. Peterson, Rachelle W. Johnson, Julie A. Sterling, Dana M. Brantley-Sieders
Software Mentions: 1
Published: over 3 years ago

10.1155/2010/621069

Molecular Characterization of the Onset and Progression of Colitis in Inoculated Interleukin-10 Gene-Deficient Mice: A Role for PPAR<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mi>α</mml:mi></mml:math>
Cited by: 18
Author(s): Bianca Knoch, Matthew P. G. Barnett, Janine M. Cooney, Warren C. McNabb, Diane Barraclough, William A. Laing, Shuotun Zhu, Zaneta A. Park, Paul Maclean, Scott O. Knowles, Nicole C. Roy
Software Mentions: 1
Published: almost 15 years ago

10.1002/pd.5475

MicroRNA changes in maternal serum from pregnancies complicated by twin‐twin transfusion syndrome: A discovery study
Cited by: 2
Author(s): Fiona L. Mackie, Barbara S. Baker, Andrew D Beggs, Agata Stodolna, RK Morris, Mark D. Kilby
Software Mentions: 1
Published: over 5 years ago

10.3390/proteomes3030266

Use of Aleuria alantia Lectin Affinity Chromatography to Enrich Candidate Biomarkers from the Urine of Patients with Bladder Cancer
Cited by: 6
Author(s): Sarah R. Ambrose, Naheema S. Gordon, James Goldsmith, Wenbin Wei, Maurice P. Zeegers, Nicholas D. James, Margaret A. Knowles, Richard T. Bryan, Douglas G. Ward
Software Mentions: 1
Published: about 9 years ago

10.3390/proteomes8040034

The Constitutive Proteome of Human Aqueous Humor and Race Specific Alterations
Cited by: 7
Author(s): Sai Karthik Kodeboyina, Tae Jin Lee, Lara Churchwell, Lane Ulrich, Kathryn E. Bollinger, David Bogorad, Amy Estes, Wenbo Zhi, Shruti Sharma, Ashok Sharma
Software Mentions: 1
Published: about 4 years ago

10.1098/rsos.150011

New insights for<i>Drosophila</i>GAGA factor in larvae
Cited by: 6
Author(s): Marta Blanch, David Piñeyro, Jordi Bernués
Software Mentions: 1
Published: over 9 years ago

10.1098/rsos.200701

Ectopic fat accumulation in human astrocytes impairs insulin action
Cited by: 6
Author(s): Martin Heni, Sabine S. Eckstein, Jens Schittenhelm, Anja Böhm, Norbert Hogrefe, Martin Irmler, Johannes Beckers, Martin Hrabé de Angelis, Hans‐Ulrich Häring, Andreas Fritsche, Harald Staiger
Software Mentions: 1
Published: about 4 years ago

10.1186/1748-717X-8-296

Changes in circulating microRNAs after radiochemotherapy in head and neck cancer patients
Cited by: 84
Author(s): Isolde Summerer, Maximilian Niyazi, Kristian Unger, Adriana Pitea, Verena Zangen, Julia Heß, Michael J. Atkinson, Claus Belka, Simone Moertl, Horst Zitzelsberger
Software Mentions: 1
Published: almost 11 years ago

10.1080/0886022X.2016.1244083

Identification of crucial miRNAs and the targets in renal cortex of hypertensive patients by expression profiles
Cited by: 12
Author(s): Guohua Wang, Lan Wu, Zhi Chen, Jinghui Sun
Software Mentions: 1
Published: about 8 years ago

10.1080/0886022X.2019.1669460

The <i>miR-15a-5p-XIST-CUL3</i> regulatory axis is important for sepsis-induced acute kidney injury
Cited by: 43
Author(s): Guanhua Xu, Lujiao Mo, Channi Wu, Xiaoyuan Shen, Han Dong, Lixin Yu, Ping-Ying Pan, Kanda Pan
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12958-015-0010-7

Global gene expression in granulosa cells of growing, plateau and atretic dominant follicles in cattle
Cited by: 49
Author(s): Annie Girard, Isabelle Dufort, Gabriel Douville, Marc‐André Sirard
Software Mentions: 1
Published: over 9 years ago

10.1186/s12958-019-0546-z

Analysis of key genes and their functions in placental tissue of patients with gestational diabetes mellitus
Cited by: 9
Author(s): Yuxia Wang, Haifeng Yu, Fangmei Liu, Xiue Song
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12958-021-00760-x

TMT-based proteomic and bioinformatic analyses of human granulosa cells from obese and normal-weight female subjects
Cited by: 9
Author(s): Chenchen Si, Nan Wang, Mingjie Wang, Yue Liu, Zhihong Niu, Zhide Ding
Software Mentions: 1
Published: over 3 years ago

10.1530/REP-19-0587

Integrated analysis of mRNA and protein expression profiling in tubal endometriosis
Cited by: 5
Author(s): Hang Qi, Huiyu Zhang, Xiujuan Zhao, Ya Qin, Liang Guo, Xiaoqing He, Jian Zhang
Software Mentions: 1
Published: over 4 years ago

10.1530/REP-20-0677

CLDN1 regulates trophoblast apoptosis and proliferation in preeclampsia
Cited by: 9
Author(s): Yuchen Zhang, Xiaoli Qin, Xiaoling Ma, Hui-Qin Mo, Quan Shi, Cheng-Xi Zhang, Xiaowei Wei, Xueqing Liu, Yan Zhang, Fu‐Ju Tian, Yi Lin
Software Mentions: 1
Published: over 3 years ago

10.1186/1465-9921-10-2

Transcriptome profiling of primary murine monocytes, lung macrophages and lung dendritic cells reveals a distinct expression of genes involved in cell trafficking
Cited by: 29
Author(s): Zbigniew Zasłona, Jochen Wilhelm, Lidija Cakarova, Leigh M. Marsh, Werner Seeger, Jürgen Lohmeyer, Werner von Wulffen
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12931-018-0816-x

The therapeutic effect of mesenchymal stem cells on pulmonary myeloid cells following neonatal hyperoxic lung injury in mice
Cited by: 23
Author(s): Ali Al-Rubaie, Andrea F Wise, Foula Sozo, Robert De Matteo, Chrishan S. Samuel, Richard Harding, Sharon D. Ricardo
Software Mentions: 1
Published: over 6 years ago

10.1186/s12931-019-1062-6

Arginase impairs hypoxic pulmonary vasoconstriction in murine endotoxemia
Cited by: 6
Author(s): Bodil Petersen, Cornelius Busch, Grigorij Schleifer, Dominik Schaack, Felix Lasitschka, Kenneth D. Bloch, Donald B. Bloch, Fumito Ichinose
Software Mentions: 1
Published: over 5 years ago

10.1186/s12931-019-1176-x

Wnt signaling regulates trans-differentiation of stem cell like type 2 alveolar epithelial cells to type 1 epithelial cells
Cited by: 34
Author(s): Elhusseiny Mohamed Mahmud Abdelwahab, Judit Rapp, D. Feller, Veronika Csöngei, Szilárd Pál, Domokos Bartis, David Thickett, Judit E. Pongrácz
Software Mentions: 1
Published: about 5 years ago

10.1186/s12977-018-0409-2

A CRISPR screen for factors regulating SAMHD1 degradation identifies IFITMs as potent inhibitors of lentiviral particle delivery
Cited by: 20
Author(s): Ferdinand Roesch, Molly OhAinle, Michael Emerman
Software Mentions: 1
Published: over 6 years ago

10.1177/2472555220973597

CETSA MS Profiling for a Comparative Assessment of FDA-Approved Antivirals Repurposed for COVID-19 Therapy Identifies TRIP13 as a Remdesivir Off-Target
Cited by: 11
Author(s): Tomas Friman, Alexey Chernobrovkin, Daniel Martinez Molina, Laurence H. Arnold
Software Mentions: 1
Published: over 3 years ago

10.1038/srep03372

Hematopoietic Stem and Progenitor Cells Acquire Distinct DNA-Hypermethylation During in vitro Culture
Cited by: 29
Author(s): Carola I. Weidner, Thomas Walenda, Qiong Lin, M Wölfler, Bernd Denecke, Ivan G. Costa, Martin Zenke, Wolfgang Wagner
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep05008

PHF8 and REST/NRSF co-occupy gene promoters to regulate proximal gene expression
Cited by: 13
Author(s): Juan Wang, Xueqiu Lin, Su Wang, Chenfei Wang, Qixuan Wang, Xikun Duan, Peng Lü, Qian Wang, Chengyang Wang, X. Shirley Liu, Jinyan Huang
Software Mentions: 1
Published: over 10 years ago

10.1038/srep09088

Blood cell transcriptomic-based early biomarkers of adverse programming effects of gestational calorie restriction and their reversibility by leptin supplementation
Cited by: 19
Author(s): Jadwiga Konieczna, Juana Sánchez, Mariona Palou, Catalina Picó, Andreu Taberner Palou
Software Mentions: 1
Published: over 9 years ago

10.1038/srep12393

Integrated genomic approaches identify major pathways and upstream regulators in late onset Alzheimer’s disease
Cited by: 102
Author(s): Xinzhong Li, Jintao Long, Taigang He, Robert Belshaw, James A. Scott
Software Mentions: 1
Published: over 9 years ago

10.1038/srep13895

Autoantibody Profiling of Glioma Serum Samples to Identify Biomarkers Using Human Proteome Arrays
Cited by: 40
Author(s): Parvez Syed, S. Gupta, Saket Choudhary, Narendra Goud Pandala, Apurva Atak, Annie Richharia, Manubhai Kp, Heng Zhu, Sridhar Epari, Santosh Noronha, Aliasgar Moiyadi, Sanjeeva Srivastava
Software Mentions: 1
Published: about 9 years ago

10.1038/srep15007

Junb controls lymphatic vascular development in zebrafish via miR-182
Cited by: 22
Author(s): Kristin Kiesow, Katrin Bennewitz, Laura Gutierrez-Miranda, Sandra J. Stoll, Bettina Hartenstein, Peter Angel, Jens Krøll, Marina Schorpp-Kistner
Software Mentions: 1
Published: about 9 years ago

10.1038/srep15214

Expression profiling of lymph nodes in tuberculosis patients reveal inflammatory milieu at site of infection
Cited by: 39
Author(s): Abhijit Maji, Richa Misra, Anupam Mondal, Dhirendra Kumar, Divya Bajaj, Abhinav Singhal, Gunjan Arora, Amit Bhaduri, Andaleeb Sajid, Sugandha Bhatia, Sompal Singh, Harshvardhan Singh, V. Pandu Ranga Rao, Debasis Dash, E. Shalini, Joy Sarojini Michael, Anil Chaudhary, Rajesh S. Gokhale, Yogendra Singh
Software Mentions: 1
Published: about 9 years ago

10.1038/srep16688

The human decapping scavenger enzyme DcpS modulates microRNA turnover
Cited by: 19
Author(s): Oussama Méziane, Sandra Piquet, Gabriel D. Bossé, Dominic Gagné, Éric R. Paquet, Claude Robert, Michael A. Tones, Martin J. Simard
Software Mentions: 1
Published: about 9 years ago

10.1038/srep16423

Adaptation to acetaminophen exposure elicits major changes in expression and distribution of the hepatic proteome
Cited by: 34
Author(s): RM Eakins, James Walsh, Laura E. Randle, RE Jenkins, Ina Schuppe-Koistinen, Cliff Rowe, Philip Starkey Lewis, Olga Vasieva, Neus Prats, Nathalie Brillant, Mariona Aulí, M. Bayliss, Steven D. Webb, J A Rees, NR Kitteringham, Goldring Ce, BK Park
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep17518

Glycosylation of Dentin Matrix Protein 1 is critical for osteogenesis
Cited by: 23
Author(s): Ying Sun, Yiming Weng, Chenyang Zhang, Yi Liu, Kang Chen, Zhongshuang Liu, Bo Jing, Qi Zhang, Zuolin Wang
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep17566

Secretome identification of immune cell factors mediating metastatic cell homing
Cited by: 20
Author(s): Brian A. Aguado, Jia Wu, Samira M. Azarin, Dhaval Nanavati, Shreya Rao, Grace G. Bushnell, Chaitanya Medicherla, Lonnie D. Shea
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep17187

Capturing complex tumour biology in vitro: histological and molecular characterisation of precision cut slices
Cited by: 90
Author(s): Emma Davies, Di Meng, Matthias Gutekunst, Katja Närhi, Hanneke J. A. A. van Zoggel, Sami Blom, Ashwini S. Nagaraj, Tauno Metsalu, Eva Oswald, Sigrun Erkens-Schulze, Juan A. Delgado San Martin, Riku Turkki, Stephen R. Wedge, Taija M. af Hällström, Julia Schueler, Wytske M. van Weerden, Emmy W. Verschuren, Simon T. Barry, Heiko van der Kuip, John A. Hickman
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep20864

Selective inhibition of EZH2 by ZLD1039 blocks H3K27methylation and leads to potent anti-tumor activity in breast cancer
Cited by: 45
Author(s): Xian‐Rong Song, Tiantao Gao, Ningyu Wang, Qiang Feng, Xinyu You, Tinghong Ye, Qian Lei, Yiping Zhu, Menghua Xiong, Yong Xia, Fangfang Yang, Yu Shi, Yuquan Wei, Lidan Zhang, Luoting Yu
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-019-47246-w

GRP78 translocation to the cell surface and O-GlcNAcylation of VE-Cadherin contribute to ER stress-mediated endothelial permeability
Cited by: 23
Author(s): Raji Rajesh Lenin, Peter G. Nagy, Kumar Abhiram Jha, Rajashekhar Gangaraju
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47245-x

Global view of the RAF-MEK-ERK module and its immediate downstream effectors
Cited by: 10
Author(s): Cristina Costa Santini, James Longden, Erwin M. Schoof, Simpson Cd, Grace R. Jeschke, Pau Creixell, Jinho Kim, Xuewei Wu, Benjamin E. Turk, Neal Rosen, Poulikos I. Poulikakos, Rune Linding
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47581-y

Effect of immunosuppression in miRNAs from extracellular vesicles of colorectal cancer and their influence on the pre-metastatic niche
Cited by: 11
Author(s): Valeria Tubita, Joan Seguí-Barber, Juan José Lozano, Elisenda Bañón-Maneus, Jordi Rovira, David Cucchiari, Daniel Moya-Rull, Federico Oppenheimer, Hernando del Portillo, Josep M. Campistol, Fritz Diekmann, María José Ramírez-Bajo, Ignacio Revuelta
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47774-5

Comprehensive Proteomic Analysis Reveals Intermediate Stage of Non-Lesional Psoriatic Skin and Points out the Importance of Proteins Outside this Trend
Cited by: 23
Author(s): Edit Szél, Renáta Bozó, Éva Hunyadi‐Gulyás, Máté Manczinger, Kornélia Szabó, Lajos Kemény, Zsuzsanna Bata‐Csörgő, Gergely Groma
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48276-0

Sinus node-like pacemaker mechanisms regulate ectopic pacemaker activity in the adult rat atrioventricular ring
Cited by: 10
Author(s): Sunil Jit R. J. Logantha, Sanjay Kharche, Y. Zhang, Andrew Atkinson, Guoliang Hao, Mark R. Boyett, Halina Dobrzynski
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48816-8

Transcriptomic and functional analyses of 3D placental extravillous trophoblast spheroids
Cited by: 16
Author(s): Michael K. Wong, Mishquatul Wahed, Sarah A. Shawky, Anna Dvorkin‐Gheva, Sandeep Raha
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-52682-9

The intrinsic circadian clock in podocytes controls glomerular filtration rate
Cited by: 22
Author(s): Camille Ansermet, Gabriel Centeno, Svetlana Nikolaeva, Marc Maillard, Sylvain Pradervand, Dmitri Firsov
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-52886-z

Identification of candidate cancer drivers by integrative Epi-DNA and Gene Expression (iEDGE) data analysis
Cited by: 4
Author(s): Amy Li, Bjoern Chapuy, Xaralabos Varelas, Paola Sebastiani, Stefano Monti
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-53482-x

Late recurrence of breast cancer is associated with pro-cancerous immune microenvironment in the primary tumor
Cited by: 43
Author(s): Takashi Terauchi, Li Yan, Mariko Asaoka, Omar M. Rashid, Kazuaki Takabe
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54036-x

Bone marrow adipose tissue does not express UCP1 during development or adrenergic-induced remodeling
Cited by: 20
Author(s): Clarissa S. Craft, Hero Robles, Madelyn R. Lorenz, Eric D. Hilker, Kristann Magee, Thomas Levin Andersen, William P. Cawthorn, Ormond A. MacDougald, Charles Harris, Erica L. Scheller
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-53907-7

FGF Signalling in the Self-Renewal of Colon Cancer Organoids
Cited by: 28
Author(s): Jörg Otte, Levent Dizdar, Bianca Behrens, Wolfgang Goering, Wolfram Trudo Knoefel, Wasco Wruck, Nikolas H. Stoecklein, James Adjaye
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54868-7

Novel Bead-Based Epitope Assay is a sensitive and reliable tool for profiling epitope-specific antibody repertoire in food allergy
Cited by: 35
Author(s): Maria Suprun, Robert C. Getts, Rohit Raghunathan, Galina Grishina, Marc Witmer, Gustavo Giménez, Hugh A. Sampson, Mayte Suárez‐Fariñas
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-55287-4

TRANSNAP: a web database providing comprehensive information on Japanese pear transcriptome
Cited by: 8
Author(s): Shizuka Koshimizu, Yoshitomo Nakamura, Chikako Nishitani, Mariko Kobayashi, Hajime Ohyanagi, Takatsugu Yamamoto, Kentarô Yano
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-55645-2

Bacillus amyloliquefaciens MBI600 differentially induces tomato defense signaling pathways depending on plant part and dose of application
Cited by: 36
Author(s): Anastasia Dimopoulou, Ioannis Theologidis, Burghard Liebmann, Kriton Kalantidis, Nikon Vassilakos, Nicholas Skandalis
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-57011-8

Regulation of Gdf5 expression in joint remodelling, repair and osteoarthritis
Cited by: 38
Author(s): Karolina Kania, Fabio Colella, Anna Helene Katrin Riemen, Hui Wang, Kenneth A. Howard, Thomas Aigner, Francesco Dell’Accio, Terence D. Capellini, Anke J. Roelofs, Cosimo De Bari
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-57293-y

CD40L membrane retention enhances the immunostimulatory effects of CD40 ligation
Cited by: 13
Author(s): Taha Elmetwali, Asmaa Salman, Wenbin Wei, Syed A. Hussain, Lawrence S. Young, Daniel H. Palmer
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-57698-0

Silencing of SENP2 in Multiple Myeloma Induces Bortezomib Resistance by Activating NF-κB Through the Modulation of IκBα Sumoylation
Cited by: 15
Author(s): Hong-Yi Xie, Yuanliang Gu, Wenjuan Wang, Xuyao Wang, Xiaojuan Ye, Chao Xin, Mengjiao Lü, B. Ashok Reddy, Peng Shu
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-58358-z

Stratifying cellular metabolism during weight loss: an interplay of metabolism, metabolic flexibility and inflammation
Cited by: 8
Author(s): Samar Tareen, Martina Kutmon, Theo M. de Kok, E.C.M. Mariman, Marleen A. van Baak, Chris T. Evelo, Michiel E. Adriaens, Ilja C. W. Arts
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-59577-0

Deducing signaling pathways from parallel actions of arsenite and antimonite in human epidermal keratinocytes
Cited by: 3
Author(s): Marjorie A. Phillips, Ángela Cánovas, Miguel A. Rea, Alma Islas–Trejo, Juan F. Medrano, Blythe Durbin‐Johnson, David M. Rocke, Robert H. Rice
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60714-y

Identification of significant gene biomarkers of low back pain caused by changes in the osmotic pressure of nucleus pulposus cells
Cited by: 10
Author(s): Changsong Zhao, Xuemin Quan, Jie He, Rugang Zhao, Yao Zhang, Xin Li, Sheng Sun, Rui Ma, Qiang Zhang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-60616-z

Integrated RNA and metabolite profiling of urine liquid biopsies for prostate cancer biomarker discovery
Cited by: 35
Author(s): Bongyong Lee, Iqbal Mahmud, John Marchica, Paweł Dereziński, Feng Qi, Fubo Wang, Piyush Joshi, Felipe Valerio, Inoel Rivera, Vipul Patel, Christian P. Pavlovich, Timothy J. Garrett, Gary P. Schroth, Yinghao Sun, Ranjan J. Perera
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-60810-z

The role of semen and seminal plasma in inducing large-scale genomic changes in the female porcine peri-ovulatory tract
Cited by: 22
Author(s): Manuel Álvarez‐Rodríguez, Cristina A. Martínez, Dominic Wright, Heriberto Rodríguez-Martinez
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-62414-z

Transcriptomics in cancer revealed by Positron Emission Tomography radiomics
Cited by: 12
Author(s): Florent Tixier, Catherine Chèze-Le-Rest, Ulrike Schick, Brigitte Simon, Xavier Dufour, Stéphane Key, Olivier Pradier, Marc Aubry, Mathieu Hatt, Laurent Corcos, Dimitris Visvikis
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-63840-9

Construction and analysis for differentially expressed long non-coding RNAs and mRNAs in acute myocardial infarction
Cited by: 10
Author(s): Ning Song, Xiangmei Li, Junyi Luo, Hua‐Jin Zhai, Qian Zhao, Xinrong Zhou, Fen Liu, Xue-He Zhang, Xiao‐Ming Gao
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-63904-w

Gene expression profiles for low-dose exposure to diethyl phthalate in rodents and humans: a translational study with implications for breast carcinogenesis
Cited by: 18
Author(s): Kalpana Gopalakrishnan, Vasily N. Aushev, Fabiana Manservisi, Laura Falcioni, Simona Panzacchi, Fiorella Belpoggi, Humberto Parada, Gail Garbowski, Hanina Hibshoosh, Regina M. Santella, Marilie D. Gammon, Susan L. Teitelbaum, Jia Chen
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-64356-y

Comprehensive analysis of the SLC16A gene family in pancreatic cancer via integrated bioinformatics
Cited by: 36
Author(s): Shan Yu, Yanshuang Wu, Chunlong Li, Zhipeng Qu, Ge Lou, Xiaorong Guo, Jingjing Ji, Nan Li, Mian Guo, Maomao Zhang, Lei Lei, Sheng Tai
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-64524-0

Integration of whole-body [18F]FDG PET/MRI with non-targeted metabolomics can provide new insights on tissue-specific insulin resistance in type 2 diabetes
Cited by: 4
Author(s): Klev Diamanti, Robin Visvanathar, Maria J. Pereira, Marco Cavalli, Gang Pan, Chanchal Kumar, Stanko Skrtic, Ulf Risérus, Jan W. Eriksson, Joel Kullberg, Jan Komorowski, Claes Wadelius, Håkan Åhlström
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-65606-9

Bioinformatic analysis reveals the importance of epithelial-mesenchymal transition in the development of endometriosis
Cited by: 29
Author(s): Meihong Chen, Yilu Zhou, Hong Xu, Catherine M. Hill, Rob M. Ewing, Da He, Xiaoling Zhang, Yihua Wang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66122-6

Anaesthetic-dependent changes in gene expression following acute and chronic exposure in the rodent brain
Cited by: 20
Author(s): Dannielle Upton, Kata Popovic, Roger Fulton, Michael Kassiou
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66872-3

Identification of core genes in the progression of endometrial cancer and cancer cell-derived exosomes by an integrative analysis
Cited by: 25
Author(s): Shuang Shi, Qiang Tan, Fuqiang Feng, Heping Huang, Jingjie Liang, Dingren Cao, Zhengguang Wang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66868-z

Distinct abdominal and gluteal adipose tissue transcriptome signatures are altered by exercise training in African women with obesity
Cited by: 14
Author(s): Pamela A. Nono Nankam, Matthias Blüher, Stephanie Kehr, Nora Klöting, Knut Krohn, Kevin Adams, Peter F. Stadler, Amy E. Mendham, Julia H. Goedecke
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66221-4

Transcriptomic differences in MSA clinical variants
Cited by: 7
Author(s): Alexandra Pérez‐Soriano, Magdalena Arnal, Teresa Botta-Orfila, Darly M. Giraldo, Manel Fernández, Yaroslau Compta, Rubén Fernández‐Santiago, Mario Ezquerra, Gian Gaetano Tartaglia, Marı́a José Martı́, Esteban Muñoz, Javier Pagonabarraga, Francesc Valldeoriola, Jorge Hernández‐Vara, Serge Jauma Classen, Víctor Puente, Claustre Pont, Núria Caballol, Oriol de Fábregues, Asunción Ávila, Matilde Calopa, Carles Gaig, Pau Pástor, Montserrat Pujol, Joan Santamaría, Lluís Planellás, Ana Cámara
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67550-0

A novel protective role for microRNA-3135b in Golgi apparatus fragmentation induced by chemotherapy via GOLPH3/AKT1/mTOR axis in colorectal cancer cells
Cited by: 21
Author(s): Stephanie I. Nuñez‐Olvera, Bibiana Chávez‐Munguía, María Cruz del Rocío Terrones-Gurrola, Laurence A. Marchat, Jonathan Puente-Rivera, Erika Ruiz‐García, Alma D. Campos‐Parra, Carlos Vázquez‐Calzada, Erik Lizárraga-Verdugo, Rosalío Ramos‐Payán, Yarely M. Salinas‐Vera, César López-Camarillo
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67446-z

SnoRNA signatures in cartilage ageing and osteoarthritis
Cited by: 30
Author(s): Mandy J. Peffers, Alzbeta Chabronova, Panagiotis Balaskas, Yongxiang Fang, Philip Dyer, A. Cremers, Pieter J. Emans, Peter Z. Feczko, M.M. Caron, Tim J. M. Welting
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68890-7

Estrogens decrease osteoclast number by attenuating mitochondria oxidative phosphorylation and ATP production in early osteoclast precursors
Cited by: 41
Author(s): Ha‐Neui Kim, Filipa Ponte, Intawat Nookaew, Serra Ucer Ozgurel, Adriana Marques-Carvalho, Srividhya Iyer, Aaron Warren, Nùkhet Aykin-Burns, Kimberly J. Krager, Vilma A. Sardão, Li Han, Rafael de Cabo, Haibo Zhao, Robert L. Jilka, Stavros C. Manolagas, Maria Almeida
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-69164-y

Systemic lipid dysregulation is a risk factor for macular neurodegenerative disease
Cited by: 23
Author(s): Roberto Bonelli, Sasha M Woods, Brendan R E Ansell, Tjebo Heeren, Catherine Egan, Kamron Khan, Robyn H. Guymer, Jennifer Trombley, Martin Friedlander, Melanie Bahlo, Marcus Fruttiger
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68988-y

Modulating electrophysiology of motor neural networks via optogenetic stimulation during neurogenesis and synaptogenesis
Cited by: 7
Author(s): Gelson J. Pagan‐Diaz, Jenny Drnevich, Karla P. Ramos-Cruz, Richard Sam, Parijat Sengupta, Rashid Bashir
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-69691-8

Survival differences and associated molecular signatures of DNMT3A-mutant acute myeloid leukemia patients
Cited by: 15
Author(s): Chris Lauber, Nádia Correia, Andreas Trumpp, Michael A. Rieger, Anna Dolnik, Lars Bullinger, Ingo Roeder, Michael Seifert
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-70687-7

Altered serum protein levels in frontotemporal dementia and amyotrophic lateral sclerosis indicate calcium and immunity dysregulation
Cited by: 22
Author(s): Jared S. Katzeff, Fiona Bright, Kitty Lo, Jillian J. Kril, Angela Connolly, Ben Crossett, Lars M. Ittner, Michael Kassiou, Clement T. Loy, John R. Hodges, Olivier Piguet, Matthew C. Kiernan, Glenda M. Halliday, Woojin Scott Kim
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-70832-2

Machine learning for RNA sequencing-based intrinsic subtyping of breast cancer
Cited by: 30
Author(s): Silvia Cascianelli, Ivan Molineris, Claudio Isella, Marco Masseroli, Enzo Medico
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-71852-8

The synergistic interaction of thermal stress coupled with overstocking strongly modulates the transcriptomic activity and immune capacity of rainbow trout (Oncorhynchus mykiss)
Cited by: 16
Author(s): Alexander Rebl, Tomáš Korytář, Andreas Borchel, Ralf Bochert, Joanna Ewa Strzelczyk, Tom Goldammer, Marieke Verleih
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-72955-y

Arabidopsis, tobacco, nightshade and elm take insect eggs as herbivore alarm and show similar transcriptomic alarm responses
Cited by: 14
Author(s): Tobias Lortzing, Reinhard Kunze, Anke Steppuhn, Monika Hilker, Tobias Lortzing
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-72551-0

Identifying a nasal gene expression signature associated with hyperinflation and treatment response in severe COPD
Cited by: 2
Author(s): Alen Faiz, Kai Imkamp, Erica van der Wiel, Ilse M. Boudewijn, Gerard H. Koppelman, Corry‐Anke Brandsma, Huib A. M. Kerstjens, Wim Timens, Sebastiaan J. Vroegop, Henk Pasma, Wim Boersma, Pascal Wielders, Frank van den Elshout, Khaled Mansour, Katrina Steiling, Avrum Spira, Marc E. Lenburg, Irene H. Heijink, Dirkje S. Postma, Maarten van den Berge
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-77732-5

Spontaneous intake of essential oils after a negative postnatal experience has long-term effects on blood transcriptome in chickens
Cited by: 6
Author(s): Aline Foury, Anne Collin, Jean‐Christophe Helbling, Christine Leterrier, Marie‐Pierre Moisan, Laurence Guilloteau
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-78207-3

Maternal proteomic profiling reveals alterations in lipid metabolism in late-onset fetal growth restriction
Cited by: 9
Author(s): Cristina Paulés, L. Youssef, J. Miranda, F. Crovetto, Josep Marı́a Estanyol, Guerau Fernández, F. Crispi, E. Gratacós
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-79598-z

Blocking PDGF-CC signaling ameliorates multiple sclerosis-like neuroinflammation by inhibiting disruption of the blood–brain barrier
Cited by: 13
Author(s): Manuel Zeitelhofer, Milena Z. Adzemovic, Christine Moessinger, Christina Stefanitsch, Carina Strell, Lars Muhl, Lou Brundin, Linda Fredriksson, Tomas Olsson, Ulf Eriksson, Ingrid Nilsson
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-79611-5

Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance
Cited by: 8
Author(s): Jan Félix, Claire Siebert, Julia Novion Ducassou, Jérôme Nigou, Pierre Garcia, Angélique Fraudeau, Karine Huard, Caroline Mas, Céline Brochier-Armanet, Yohann Couté, Irina Gutsche, Patricia Renesto
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-83138-8

MUTYH is associated with hepatocarcinogenesis in a non-alcoholic steatohepatitis mouse model
Cited by: 4
Author(s): Hiroki Sakamoto, Koji Miyanishi, Shingo Tanaka, Ryo Itô, Kota Hamaguchi, Akira Sakurada, Masanori Sato, Tomohiro Kubo, Takahiro Osuga, Kazuyuki Murase, Kohichi Takada, Yusaku Nakabeppu, Masayoshi Kobune, Junji Kato
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-83591-5

CSF proteome in multiple sclerosis subtypes related to brain lesion transcriptomes
Cited by: 7
Author(s): Maria L. Elkjaer, Arkadiusz Nawrocki, Tim Kacprowski, Pernille Lassen, Anja Hviid Simonsen, Romain Marignier, Tobias Sejbæk, Helle Hvilsted Nielsen, Lene Wermuth, Alyaa Yakut Rashid, Peter Høgh, Finn Sellebjerg, Richard Reynolds, Jan Baumbach, Martin R. Larsen, Zsolt Illés
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-82834-9

LINC00665 promotes the progression of acute myeloid leukemia by regulating the miR-4458/DOCK1 pathway
Cited by: 10
Author(s): Xiaoyu Yang, Yan Wang, Sulei Pang, Xiaojie Li, Panpan Wang, Ruojin Ma, Yunyun Ma, Chunge Song
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-85044-5

Integrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome
Cited by: 4
Author(s): Robert E. Moore, Bhanwar Lal Puniya, Robert Powers, Chittibabu Guda, Kenneth W. Bayles, David B. Berkowitz, Tomáš Helikar
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-84612-z

Validation of a multicellular tumor microenvironment system for modeling patient tumor biology and drug response
Cited by: 4
Author(s): Devin G. Roller, Stephen A. Hoang, Kristopher D. Rawls, Katherine A. Owen, Michael B. Simmers, Robert A. Figler, Julia Wulfkuhle, Emanuel F. Petricoin, Brian R. Wamhoff, Daniel Gioeli
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-85237-y

Genome-wide identification and characterization of circular RNA in resected hepatocellular carcinoma and background liver tissue
Cited by: 5
Author(s): Yuki Sunagawa, Suguru Yamada, Fuminori Sonohara, Keisuke Kurimoto, Nobutake Tanaka, Yunosuke Suzuki, Yoshikuni Inokawa, Hideki Takami, Masamichi Hayashi, Mitsuro Kanda, Chie Tanaka, Goro Nakayama, Masahiko Koike, Yasuhiro Kodera
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-85471-4

Global network analysis in Schizosaccharomyces pombe reveals three distinct consequences of the common 1-kb deletion causing juvenile CLN3 disease
Cited by: 6
Author(s): Christopher J. Minnis, StJohn Townsend, Julia Petschnigg, Elisa Tinelli, Jürg Bähler, Claire Russell, Sara Mole
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-85877-0

Proteomic blood profiling in mild, severe and critical COVID-19 patients
Cited by: 61
Author(s): Hamel Patel, Nicholas J. Ashton, Richard Dobson, Lars‐Magnus Andersson, Aylin Yilmaz, Kaj Blennow, Magnus Gisslén, Henrik Zetterberg
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-86097-2

Identification of oxytocin-related lncRNAs and assessment of their expression in breast cancer
Cited by: 9
Author(s): Sepehr Behtaji, Soudeh Ghafouri‐Fard, Arezou Sayad, Ali Sattari, Mathieu Rederstorff, Mohammad Taheri
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-87362-0

Establishment and characterization of a new spontaneously immortalized ER−/PR−/HER2+ human breast cancer cell line, DHSF-BR16
Cited by: 2
Author(s): Stefania Nobili, Antonella Mannini, Astrid Parenti, Chiara Raggi, Andrea Lapucci, Giovanna Chiorino, Sara Paccosi, Paola Di Gennaro, Vania Vezzosi, Paolo Romagnoli, Tommaso Susini, Marcella Coronnello
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-87168-0

Multi-omic analyses in Abyssinian cats with primary renal amyloid deposits
Cited by: 4
Author(s): Francesca Genova, Simona Nonnis, Elisa Maffioli, Gioacchino Tedeschi, M.G. Strillacci, Michela Carisetti, G. Sironi, Francesca Anna Cupaioli, Noemi Di Nanni, Alessandra Mezzelani, Ettore Mosca, Christopher R Helps, P.A.J. Leegwater, Laëtitia Dorso, M. Longeri
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-88489-w

Ulcerative colitis immune cell landscapes and differentially expressed gene signatures determine novel regulators and predict clinical response to biologic therapy
Cited by: 12
Author(s): Harrison M. Penrose, Rida Iftikhar, Morgan Collins, Eman A. Toraih, Emmanuelle Ruiz, Nathan Ungerleider, Hani Nakhoul, Erik Flemington, Emad Kandil, Shamita B. Shah, Suzana D. Savkovic
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-88695-6

Differential root and shoot magnetoresponses in Arabidopsis thaliana
Cited by: 15
Author(s): Ivan A. Paponov, Judith Fliegmann, Ravishankar Narayana, Massimo E. Maffei
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-88816-1

Inhibition of eEF2K synergizes with glutaminase inhibitors or 4EBP1 depletion to suppress growth of triple-negative breast cancer cells
Cited by: 5
Author(s): Youngjun Ju, Yaacov Ben‐David, Daniela Rotin, Eldad Zacksenhaus
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-88465-4

Adulthood blood levels of hsa-miR-29b-3p associate with preterm birth and adult metabolic and cognitive health
Cited by: 9
Author(s): Saara Marttila, Suvi Rovio, Pashupati P. Mishra, Ilkka Seppälä, Leo-Pekka Lyytikäinen, Markus Juonala, Mélanie Waldenberger, Niku Oksala, Mika Ala‐Korpela, Emily W. Harville, Nina Hutri‐Kähönen, Mika Kähönen, Olli T. Raitakari, Terho Lehtimäki, Emma Raitoharju
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-89789-x

Discovery of primary prostate cancer biomarkers using cross cancer learning
Cited by: 12
Author(s): Kaiyue Zhou, Suzan Arslanturk, Douglas B. Craig, Elisabeth I. Heath, Sorin Drăghici
Software Mentions: 1
Published: over 3 years ago

Projects: bioconductor: limma

Papers Mentioning limma 7,776