bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1038/cddis.2016.180

AKT activation controls cell survival in response to HDAC6 inhibition
Cited by: 21
Author(s): Maciej Kaliszczak, Sebastian Trousil, Taqdir Ali, Eric O. Aboagye
Software Mentions: 1
Published: about 10 years ago

10.7717/peerj.10764

Metabolic impact of weight variations in Icelandic horses
Cited by: 5
Author(s): Julien Delarocque, Florian Frers, Korinna Huber, Klaus Jung, Karsten Feige, Tobias Warnken
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-020-2532-y

The circular RNA circMAST1 promotes hepatocellular carcinoma cell proliferation and migration by sponging miR-1299 and regulating CTNND1 expression
Cited by: 26
Author(s): Xuezhong Yu, Ping Sheng, Jing Sun, Xijuang Zhao, Junting Zhang, Yiying Li, YiMeng Zhang, Wenxiu Zhang, Jianqi Wang, Kunpeng Liu, Daling Zhu, Hongchi Jiang
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2229-10-134

Delineating the structural, functional and evolutionary relationships of sucrose phosphate synthase gene family II in wheat and related grasses
Cited by: 13
Author(s): Shailendra Sharma, Nese Sreenivasulu, Vokkaliga T. Harshavardhan, Christiane Seiler, Shiveta Sharma, Zaynali Nezhad Khalil, Eduard Akhunov, Sunish K. Sehgal, Marion S. Röder
Software Mentions: 1
Published: over 16 years ago

10.1186/s12967-021-03050-7

GSK2126458 has the potential to inhibit the proliferation of pancreatic cancer uncovered by bioinformatics analysis and pharmacological experiments
Cited by: 9
Author(s): Yangyang Feng, Yuguan Jiang, Hao Fang
Software Mentions: 1
Published: about 5 years ago

10.7150/jca.57255

circ0101675 promotes malignant process via sponging miR-1278 and upregulating WNT3A/5A in non-small cell lung cancer
Cited by: 11
Author(s): Wei Du, Jianpeng Hu, Rong Hu, Min Yang, Yun Peng, Zhiwei Zhang, Yuehua Li, Xiu‐Sheng He
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-021-03626-7

Circular RNA hsa_circ_101555 promotes hepatocellular carcinoma cell proliferation and migration by sponging miR-145-5p and regulating CDCA3 expression
Cited by: 14
Author(s): Xiaoguang Gu, Jianan Zhang, Yajuan Ran, Hena Pan, JinHong Jia, Ying Zhao, Xin Zhao, Wendi Li, Shasha Song, Xuezhong Yu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-021-03601-2

Circ-HMGA2 (hsa_circ_0027446) promotes the metastasis and epithelial-mesenchymal transition of lung adenocarcinoma cells through the miR-1236-3p/ZEB1 axis
Cited by: 24
Author(s): Zhongjian Yu, Xiongjie Zhu, Ying Liu, Min Liang, Meijun Liu, Zhile Liu, Lijie Qin, Xiaogang Wu, Kunpeng Du, Lu Liu, Yong Wang, Yanfang Zheng
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-021-03511-3

Sunitinib treatment promotes metastasis of drug-resistant renal cell carcinoma via TFE3 signaling pathway
Cited by: 16
Author(s): Luchao Li, Shuo Zhao, Zhengfang Liu, Nianzhao Zhang, Shengyong Pang, Ji‐Kai Liu, Cheng Liu, Yi‐Ming Fan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-020-2543-8

The circular RNA FAM169A functions as a competitive endogenous RNA and regulates intervertebral disc degeneration by targeting miR-583 and BTRC
Cited by: 26
Author(s): Wei Guo, Kun Mu, Bin Zhang, Chao Sun, Ling Zhao, Zhan‐Yin Dong, Qing Cui
Software Mentions: 1
Published: over 6 years ago

10.1186/1750-1172-6-54

Understanding the impact of 1q21.1 copy number variant
Cited by: 47
Author(s): Chansonette Harvard, Emma Strong, Eloi Mercier, Rita Colnaghi, Diana Alcantara, Eva W.C. Chow, Sally Martell, Christine Tyson, Monica Hrynchak, Barbara McGillivray, Sara Hamilton, Sandra L. Marles, Aziz Mhanni, Angelika J. Dawson, Paul Pavlidis, Ying Qiao, J. J. A. Holden, Lewis Sm, Mark O’Driscoll, Evica Rajcan‐Separovic
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2407-10-262

High-throughput miRNA profiling of human melanoma blood samples
Cited by: 143
Author(s): Petra Leidinger, Andreas Keller, Anne Borries, Jörg Reichrath, Knuth Rass, Sven Jäger, Hans‐Peter Lenhof, Eckart Meese
Software Mentions: 1
Published: over 16 years ago

10.1097/MD.0000000000018815

Expression of SREBP2 and cholesterol metabolism related genes in TCGA glioma cohorts
Cited by: 6
Author(s): Dali Li, Shenglan Li, Allen Z Xue, Laura A. Smith Callahan, Ying Liu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3000168

Opposing signaling pathways regulate morphology in response to temperature in the fungal pathogen Histoplasma capsulatum
Cited by: 20
Author(s): Lauren Rodriguez, Mark Voorhies, Sarah A. Gilmore, Sinem Beyhan, Anthony Myint, Anita Sil
Software Mentions: 1
Published: almost 7 years ago

10.1007/s00432-020-03287-7

Microarray analysis of the expression profile of immune-related gene in rapid recurrence early-stage lung adenocarcinoma
Cited by: 9
Author(s): Jie Liu, Xia Yang, Liang Zhang, Bo Yang, Wenwang Rao, Mengxia Li, Nan Dai, Yuxin Yang, Chengyuan Qian, Lei Zhang, Hualiang Xiao, Dong Wang
Software Mentions: 1
Published: about 6 years ago

10.1002/jcb.27181

MiR‐145 affected the circular RNA expression in prostate cancer LNCaP cells
Cited by: 27
Author(s): Jinhua He, Zeping Han, Jiacheng Zhou, Wei Ming Chen, Yubing Lv, Men Ling He, Yuguang Li
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms21186660

The brlA Gene Deletion Reveals That Patulin Biosynthesis Is Not Related to Conidiation in Penicillium expansum
Cited by: 7
Author(s): Chrystian Zetina-Serrano, Ophélie Rocher, Claire Naylies, Yannick Lippi, Isabelle P. Oswald, Sophie Lorber, Olivier Puel
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0063825

Global Gene Expression Profiling in PAI-1 Knockout Murine Heart and Kidney: Molecular Basis of Cardiac-Selective Fibrosis
Cited by: 33
Author(s): Asish K. Ghosh, Sheila B. Murphy, Raj Kishore, Douglas E. Vaughan
Software Mentions: 1
Published: over 13 years ago

10.3390/ijms22105225

Distinct Concentration-Dependent Molecular Pathways Regulate Bone Cell Responses to Cobalt and Chromium Exposure from Joint Replacement Prostheses
Cited by: 4
Author(s): Karan M. Shah, Mark J. Dunning, Alison Gartland, JM Wilkinson
Software Mentions: 1
Published: over 5 years ago

10.1083/jcb.201704115

Regulation of lipid droplets by metabolically controlled Ldo isoforms
Cited by: 73
Author(s): Vítor Teixeira, Lisa Johnsen, Fernando Martínez-Montañés, Alexandra Grippa, Laura Buxó, Fátima-Zahra Idrissi, Christer S. Ejsing, Pedro Carvalho
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41419-020-02771-9

PRMT5 promotes cancer cell migration and invasion through the E2F pathway
Cited by: 17
Author(s): Wojciech Barczak, Jin Li, Simon M. Carr, Shonagh Munro, Samuel R. Ward, Alexander Kanapin, Anastasia Samsonova, Nicholas B. La Thangué
Software Mentions: 1
Published: about 6 years ago

10.1111/jcmm.12616

Allergenic Can f 1 and its human homologue Lcn-1 direct dendritic cells to induce divergent immune responses
Cited by: 7
Author(s): Beate Posch, Christian Irsara, Fabian S. Gamper, M. Herrmann, Daniel Bindreither, Dietmar Fuchs, Norbert Reider, Bernhard Redl, Christine Heufler
Software Mentions: 1
Published: about 11 years ago

10.1111/jcmm.12667

Complement inhibition decreases early fibrogenic events in the lung of septic baboons
Cited by: 33
Author(s): Robert Silasi‐Mansat, Hua Zhu, Constantin Georgescu, Narcis I. Popescu, Ravi S. Keshari, G. Peer, Cristina Lupu, Fletcher B. Taylor, H. Anne Pereira, Gary T. Kinasewitz, John D. Lambris, Florea Lupu
Software Mentions: 1
Published: about 11 years ago

10.1111/jcmm.13249

Perfusion of isolated rat kidney with Mesenchymal Stromal Cells/Extracellular Vesicles prevents ischaemic injury
Cited by: 87
Author(s): Marilena Gregorini, Valeria Corradetti, Eleonora Francesca Pattonieri, Chiara Rocca, Samantha Milanesi, Andréa Peloso, Silvana Canevari, Loris De Cecco, Matteo Dugo, Maria Antonietta Avanzini, Melissa Mantelli, Marcello Maestri, Pasquale Esposito, Stefania Bruno, Carmelo Libetta, Antonio Dal Canton, Teresa Rampino
Software Mentions: 1
Published: about 9 years ago

10.1111/jcmm.13640

A panel consisting of three novel circulating lncRNAs, is it a predictive tool for gastric cancer?
Cited by: 22
Author(s): Jingjing Liu, Jiajun Wang, Yongxi Song, Bin Ma, Junlong Luo, Zhongran Ni, Peng Gao, Jingwei Sun, Jiang Zhao, Xiaowan Chen, Zhenning Wang
Software Mentions: 1
Published: over 8 years ago

10.1111/jcmm.13620

Up‐regulation of miR‐10b‐3p promotes the progression of hepatocellular carcinoma cells via targeting <scp>CMTM</scp> 5 
Cited by: 24
Author(s): Lina Guan, Degang Ji, Na Liang, Shuo Li, Baozhen Sun
Software Mentions: 1
Published: over 8 years ago

10.1111/jcmm.13684

Dysregulated circRNAs in plasma from active tuberculosis patients
Cited by: 34
Author(s): Zhengjun Yi, Kunshan Gao, Ruifang Li, Yurong Fu
Software Mentions: 1
Published: about 8 years ago

10.1111/jcmm.13856

Long non‐coding <scp>RNA CRNDE</scp> promotes the proliferation, migration and invasion of hepatocellular carcinoma cells through miR‐217/<scp>MAPK</scp>1 axis
Cited by: 55
Author(s): Haihao Wang, Jun Ke, Qiannan Guo, Kan‐Paatib Barnabo Nampoukime, Pei-Wen Yang, Ke Ma
Software Mentions: 1
Published: almost 8 years ago

10.1111/os.12412

Curcumin Inhibits Proliferation of Synovial Cells by Downregulating Expression of Matrix Metalloproteinase-3 in Osteoarthritis
Cited by: 29
Author(s): Jianbin Zeng, Haidong Wang, Zhongwei Shen, Xiaodong Yao, Chengjun Wu, Tao Pan
Software Mentions: 1
Published: over 7 years ago

10.1111/jcmm.14078

MicroRNA‐488 inhibits endometrial glandular epithelial cell proliferation, migration, and invasion in endometriosis mice via Wnt by inhibiting FZD7
Cited by: 26
Author(s): Hui Zhu, Xi-Xia Cao, Juan Liu, Hua Hua
Software Mentions: 1
Published: over 7 years ago

10.1111/jcmm.14426

Comprehensive proteogenomic analysis of human embryonic and induced pluripotent stem cells
Cited by: 11
Author(s): Elvira Immacolata Parrotta, Stefania Scalise, Domenico Taverna, Maria Teresa De Angelis, G. B. De Sarro, Marco Gaspari, Gianluca Santamaria, Giovanni Cuda
Software Mentions: 1
Published: about 7 years ago

10.1111/jcmm.14402

MicroRNA‐539 functions as a tumour suppressor in prostate cancer via the TGF‐β/Smad4 signalling pathway by down‐regulating DLX1
Cited by: 12
Author(s): Bin Sun, Yingying Fan, Aijun Yang, Lunan Liang, Jinghe Cao
Software Mentions: 1
Published: about 7 years ago

10.1111/jcmm.14079

MicroRNA‐351 eases insulin resistance and liver gluconeogenesis via the PI3K/AKT pathway by inhibiting FLOT2 in mice of gestational diabetes mellitus
Cited by: 50
Author(s): Shuhong Chen, Xiao‐Nan Liu, Yan Peng
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0082473

Molecular Strategies of the Caenorhabditis elegans Dauer Larva to Survive Extreme Desiccation
Cited by: 97
Author(s): Cihan Erkut, Andrej Vasilj, Sebastian Boland, Bianca Habermann, Andrej Shevchenko, Teymuras V. Kurzchalia
Software Mentions: 1
Published: almost 13 years ago

10.1111/jcmm.14552

Up‐regulated CST5 inhibits bone resorption and activation of osteoclasts in rat models of osteoporosis via suppression of the NF‐κB pathway
Cited by: 11
Author(s): Fei Wang, Chuanzhu Zhang, Wei Ge, Guoqiang Zhang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41419-021-03565-3

CircRNA circ_0124554 blocked the ubiquitination of AKT promoting the skip lymphovascular invasion on hepatic metastasis in colorectal cancer
Cited by: 17
Author(s): Junwei Tang, Chuan Zhang, Yuesheng Huang, Lu Wang, Zhiwu Xu, Dongsheng Zhang, Yue Zhang, Wen Peng, Yifei Feng, Yueming Sun
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21114077

Reg3α and Reg3β Expressions Followed by JAK2/STAT3 Activation Play a Pivotal Role in the Acceleration of Liver Hypertrophy in a Rat ALPPS Model
Cited by: 9
Author(s): Naohiko Otsuka, Masato Yoshioka, Yuki Abe, Yasuhiko Nakagawa, Hiroshi Uchinami, Yūzō Yamamoto
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.14537

PON1 hypermethylation is associated with progression of renal cell carcinoma
Cited by: 8
Author(s): Xin Li, Qian Yu
Software Mentions: 1
Published: about 7 years ago

10.1111/jcmm.14582

Elevated hsa‐miR‐590‐3p expression down‐regulates HMGB2 expression and contributes to the severity of IgA nephropathy
Cited by: 9
Author(s): Yunkai Zhai, Yuanyuan Qi, Xiaoyan Long, Dou Yu, Dong Li, Genyang Cheng, Jing Xiao, Zhangsuo Liu, Zhanzheng Zhao
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41419-019-2089-9

CircRNA-5692 inhibits the progression of hepatocellular carcinoma by sponging miR-328-5p to enhance DAB2IP expression
Cited by: 155
Author(s): Zhenguo Liu, Yang Yu, Zebing Huang, Yi Kong, Xingwang Hu, Wei Xiao, Jun Quan, Xue Fan
Software Mentions: 1
Published: almost 7 years ago

10.1111/jcmm.14766

Pancreatic cancer cell–derived exosomal microRNA‐27a promotes angiogenesis of human microvascular endothelial cells in pancreatic cancer via BTG2
Cited by: 62
Author(s): Dan Shang, Chao Xie, Jin Hu, Jinru Tan, Yufeng Yuan, Zhisu Liu, Zhiyong Yang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12885-017-3114-y

Effect of myeloid differentiation primary response gene 88 on expression profiles of genes during the development and progression of Helicobacter-induced gastric cancer
Cited by: 19
Author(s): Ivonne Lozano‐Pope, Arnika Sharma, Michael Matthias, Kelly S. Doran, Marygorret Obonyo
Software Mentions: 1
Published: over 9 years ago

10.1111/jcmm.14875

Circular RNA hsa_circRNA_002178 silencing retards breast cancer progression via microRNA‐328‐3p‐mediated inhibition of COL1A1
Cited by: 62
Author(s): Ting Liu, Ping Ye, Yuanyuan Ye, Sen Lu, Baohui Han
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/3981931

Screening and Functional Analysis of Hub MicroRNAs Related to Tumor Development in Colon Cancer
Cited by: 2
Author(s): Donghu Yu, Wei Li, Jingyu Huang, Xiaoping Li, Chi Zhang, Xiaolan Ruan, Sheng Li
Software Mentions: 1
Published: over 6 years ago

10.1186/s12896-015-0218-9

Transcriptome study and identification of potential marker genes related to the stable expression of recombinant proteins in CHO clones
Cited by: 9
Author(s): Uroš Jamnikar, Petra Nikolić, Aleš Belič, Marjanca Blas, Dominik Gaser, Andrej Francky, Holger Laux, Andrej Blejec, Špela Baebler, Kristina Gruden
Software Mentions: 1
Published: almost 11 years ago

10.1097/MD.0000000000027058

Exploration of immune-related cells and ceRNA in squamous cell lung cancer
Cited by: 0
Author(s): Lijun Wang, Hao Wang, Ke Xu, Yehong Xu, Yong Wang, Wei Song, Zhihong Zhang
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/1204605

SLC1A1, SLC16A9, and CNTN3 Are Potential Biomarkers for the Occurrence of Colorectal Cancer
Cited by: 9
Author(s): Jie Zhou, Zhiman Xie, Ping Cui, Qisi Su, Yu Zhang, Lijia Luo, Zhuoxin Li, Ye Li, Hao Liang, Jiegang Huang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3000270

Foxp1 is critical for the maintenance of regulatory T-cell homeostasis and suppressive function
Cited by: 37
Author(s): Jiajun Ren, Lei Han, Jialei Tang, Yuanhua Liu, Xiaoxue Deng, Qiuyue Liu, Pei Hao, Xiaoming Feng, Bin Li, Hui Hu, Haikun Wang
Software Mentions: 1
Published: over 7 years ago

10.1111/jcmm.15424

Identification of circRNA and mRNA expression profiles and functional networks of vascular tissue in lipopolysaccharide‐induced sepsis
Cited by: 17
Author(s): Mu Wen Nie, Ye Chen Han, Zhu Jun Shen, Hongzhi Xie
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.15438

UHRF1 predicts poor prognosis by triggering cell cycle in lung adenocarcinoma
Cited by: 6
Author(s): Zhenbo Tu, Xinzhou Deng, Shengqi Hou, Feng Ai, Qiuping Zhang
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/6662114

Identification and Validation of Key Genes in Hepatocellular Carcinoma by Bioinformatics Analysis
Cited by: 6
Author(s): Jia Wang, Rui Peng, Zheng Zhang, Yixi Zhang, Yuke Dai, Yan Sun
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21186858

Preventive Triple Gene Therapy Reduces the Negative Consequences of Ischemia-Induced Brain Injury after Modelling Stroke in a Rat
Cited by: 13
Author(s): Vage Markosyan, Zufar Z. Safiullov, Andrei Izmailov, Filip Fadeev, Mikhail Sokolov, M. S. Kuznetsov, Д. А. Трофимов, Evgeny Kim, Grayr Kundakchyan, Airat Gibadullin, И. И. Салафутдинов, Л. Ф. Нуруллин, Farid Vagizovich Bashirov, Р. Р. Исламов
Software Mentions: 1
Published: almost 6 years ago

10.1155/2019/2615921

Integrated Bioinformatics Analysis Identifies Hub Genes Associated with the Pathogenesis and Prognosis of Esophageal Squamous Cell Carcinoma
Cited by: 20
Author(s): Hui Zhang, Jianing Zhong, Youbing Tu, Benquan Liu, Zhibo Chen, Yunchen Luo, Yaping Tang, Fei Xiao
Software Mentions: 1
Published: over 6 years ago

10.1155/2019/8962682

Identification of Key Transcription Factors AP-1 and AP-1-Dependent miRNAs Forming a Co-Regulatory Network Controlling PTEN in Liver Ischemia/Reperfusion Injury
Cited by: 4
Author(s): Yiming Zhong, Youwei Zhu, Junfeng Dong, Wei Zhou, Cheng Xiong, Min Xue, Minmin Shi, Hao Chen
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.7124

Molecular mechanisms linking peri-implantitis and type 2 diabetes mellitus revealed by transcriptomic analysis
Cited by: 22
Author(s): YU Tian-Liang, Aneesha Acharya, Nikos Mattheos, Simin Li, Dirk Ziebolz, Gerhard Schmalz, Rainer Haak, Jana Schmidt, Yanhui Sun
Software Mentions: 1
Published: about 7 years ago

10.1186/s13104-020-05121-2

Physical activity and blood gene expression profiles: the Norwegian Women and Cancer (NOWAC) Post-genome cohort
Cited by: 1
Author(s): Karina Standahl Olsen, Marko Lukic, Kristin Benjaminsen Borch
Software Mentions: 1
Published: over 6 years ago

10.1186/1741-7007-11-93

Gene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis eleganspopulations
Cited by: 54
Author(s): Rita J. M. Volkers, L. Basten Snoek, Caspara J van Hellenberg Hubar, Renata Coopman, Wei Chen, Wentao Yang, Mark G. Sterken, Hinrich Schulenburg, Bart P. Braeckman, J.E. Kammenga
Software Mentions: 1
Published: about 13 years ago

10.1186/s12915-020-0743-4

The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Cited by: 30
Author(s): Katrina M. Morris, Matthew Hindle, Simon Boitard, David W. Burt, Angela Danner, Lél Eöry, H. S. Forrest, David Gourichon, Jérôme Gros, LaDeana W. Hillier, Thierry Jaffredo, Hanane Khoury, Rusty Lansford, Christine Leterrier, A. S. I. Loudon, Andrew S. Mason, Simone Meddle, Francis Minvielle, Patrick Minx, Frédérique Pitel, J. Seiler, Tsuyoshi Shimmura, Chad Tomlinson, Alain Vignal, Robert G. Webster, Takashi Yoshimura, Wesley C. Warren, Jacqueline Smith
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.25728

Epigenetic activation of HORMAD1 in basal-like breast cancer: role in Rucaparib sensitivity
Cited by: 24
Author(s): Xian Wang, Ying Tan, Xianlong Cao, Jin Ah Kim, Tianmeng Chen, Yiheng Hu, Matthew Wexler, Xiaosong Wang
Software Mentions: 1
Published: about 8 years ago

10.1038/cdd.2015.31

The tumor-modulatory effects of Caspase-2 and Pidd1 do not require the scaffold protein Raidd
Cited by: 19
Author(s): Lukas Peintner, Loretta Dorstyn, Sharad Kumar, Tatsiana Aneichyk, Andreas Villunger, Claudia Manzl
Software Mentions: 1
Published: over 11 years ago

10.1155/2020/9246868

Construction of a MicroRNA-mRNA Network Underlying Decidualized Endometriotic Cyst Stromal Cells Using Bioinformatics Analysis
Cited by: 1
Author(s): Junzui Li, Bin Zhao, Cui Yang, Qionghua Chen
Software Mentions: 1
Published: about 6 years ago

10.1111/jcmm.15862

Identification of Hub genes associated with infection of three lung cell lines by SARS‐CoV‐2 with integrated bioinformatics analysis
Cited by: 8
Author(s): Tian-Ao Xie, Meng-Yi Han, Xiaorui Su, Hou-He Li, Ji-Chun Chen, Xu‐Guang Guo
Software Mentions: 1
Published: about 6 years ago

10.1186/1741-7007-10-3

Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) lines
Cited by: 65
Author(s): Qiyu Bao, Wei Huang, Bo Zhu, Xiaofang Zhong, Jianhua Guo, Na Zhao, Chunming Xu, Huakun Zhang, Jinjiang Pang, Fangpu Han, Liu B
Software Mentions: 1
Published: over 14 years ago

10.1111/jcmm.15845

Respiratory syncytial virus infection‐induced mucus secretion by down‐regulation of miR‐34b/c‐5p expression in airway epithelial cells
Cited by: 17
Author(s): Xiao Du, Yu Yang, Gelei Xiao, Ming Yang, Yuan Lin, Ling Qin, Ruoxi He, Leyuan Wang, Mengping Wu, Shuangyan Wu, Juntao Feng, Yang Xiang, Xiangping Qu, Huijun Liu, Xiaoqun Qin, Chi Liu
Software Mentions: 1
Published: almost 6 years ago

10.1186/1746-6148-9-138

Five markers useful for the distinction of canine mammary malignancy
Cited by: 12
Author(s): Karol Pawłowski, Henryk Maciejewski, Kinga Majchrzak, I. Dolka, Jan A. Mol, T. Motyl, Magdalena Król
Software Mentions: 1
Published: about 13 years ago

10.1111/jcmm.15894

CircHivep2 contributes to microglia activation and inflammation via miR‐181a‐5p/SOCS2 signalling in mice with kainic acid‐induced epileptic seizures
Cited by: 26
Author(s): Xiaoying Gao, Mian Guo, Jie Liu, Yixin Zhu, Ying Cui, Shu Shengjie, Gou Haiyan, Feng-Yan Sun, Shijie Qi, Jing Sun
Software Mentions: 1
Published: almost 6 years ago

10.1111/jcmm.15984

Epigenetic alternations of microRNAs and DNA methylation contribute to gestational diabetes mellitus
Cited by: 21
Author(s): Weiqiang Zhu, Yuxia Shen, Junwei Liu, Xiaoping Fei, Zhaofeng Zhang, Min Li, Xiaohong Chen, Jianhua Xu, Qianxi Zhu, Weijin Zhou, Meihua Zhang, Shangqing Liu, Jing Du
Software Mentions: 1
Published: almost 6 years ago

10.1155/2020/5019793

Database Mining of Genes of Prognostic Value for the Prostate Adenocarcinoma Microenvironment Using the Cancer Gene Atlas
Cited by: 15
Author(s): Xin Zhao, Daixing Hu, Jia Li, Guozhi Zhao, Wei Tang, Horng‐Long Cheng
Software Mentions: 1
Published: over 6 years ago

10.1038/srep21681

Combined Secretomics and Transcriptomics Revealed Cancer-Derived GDF15 is Involved in Diffuse-Type Gastric Cancer Progression and Fibroblast Activation
Cited by: 23
Author(s): Takayuki Ishige, Motoi Nishimura, Mamoru Satoh, Mai Fujimoto, Masaki Fukuyo, Toshihisa Semba, Satoshi Kado, Sachio Tsuchida, Setsu Sawai, Hiroshi Matsushita, Akira Togawa, Hisahiro Matsubara, Atsushi Kaneda, Fumio Nomura
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.8730

Common and specific gene signatures among three different endometriosis subtypes
Cited by: 10
Author(s): Li Jiang, Mengmeng Zhang, Sixue Wang, Yuanyuan Han
Software Mentions: 1
Published: over 6 years ago

10.1038/srep22168

The Transcriptional Landscape of the Photosynthetic Model Cyanobacterium Synechocystis sp. PCC6803
Cited by: 34
Author(s): Miguel A. Hernández‐Prieto, T. A. Semeniuk, Joaquín Giner‐Lamia, Matthias E. Futschik
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22788

Insulin Resistance in Human iPS Cells Reduces Mitochondrial Size and Function
Cited by: 43
Author(s): Alison Burkart, Ker Sin Tan, Laura Warren, Salvatore Iovino, Katelyn J. Hughes, C. Ronald Kahn, Mary‐Elizabeth Patti
Software Mentions: 1
Published: over 10 years ago

10.1155/2019/6480865

Identification of EGFR as a Novel Key Gene in Clear Cell Renal Cell Carcinoma (ccRCC) through Bioinformatics Analysis and Meta-Analysis
Cited by: 9
Author(s): Sheng Wang, Zhihong Yu, Kequn Chai
Software Mentions: 1
Published: over 7 years ago

10.1038/srep23128

Continuous time Bayesian networks identify Prdm1 as a negative regulator of TH17 cell differentiation in humans
Cited by: 11
Author(s): Enzo Acerbi, Elena Viganò, Michael Poidinger, Alessandra Mortellaro, Teresa Zelante, Fabio Stella
Software Mentions: 1
Published: over 10 years ago

10.1007/s12032-021-01470-5

Identification BCL6 and miR-30 family associating with Ibrutinib resistance in activated B-cell-like diffuse large B-cell lymphoma
Cited by: 5
Author(s): Jiazheng Li, Yan Huang, Yun Zhang, Junping Wen, Yanxin Chen, Lingyan Wang, Peifang Jiang, Jianda Hu
Software Mentions: 1
Published: over 5 years ago

10.1128/JVI.02828-14

Analysis of the Early Immune Response to Infection by Infectious Bursal Disease Virus in Chickens Differing in Their Resistance to the Disease
Cited by: 43
Author(s): Jacqueline Smith, Jean-Rémy Sadeyen, Colin Butter, Pete Kaiser, David W. Burt
Software Mentions: 1
Published: over 11 years ago

10.1038/srep24828

Prolonged sleep restriction induces changes in pathways involved in cholesterol metabolism and inflammatory responses
Cited by: 63
Author(s): Velma Aho, Hanna Ollila, Erkki Kronholm, Isabel Bondia‐Pons, Pasi Soininen, Antti J. Kangas, Mika Hilvo, Ilkka Seppälä, Johannes Kettunen, Mervi Oikonen, Emma Raitoharju, Tuulia Hyötyläinen, Mika Kähönen, Jorma Viikari, Mikko Härmä, Mikael Sallinen, Vesa M. Olkkonen, Harri Alenius, Matti Jauhiainen, Tiina Paunio, Terho Lehtimäki, Veikko Salomaa, Matej Orešič, Olli T. Raitakari, Mika Ala‐Korpela, Tarja Porkka‐Heiskanen
Software Mentions: 1
Published: over 10 years ago

10.1038/srep24980

MiR-142-3p is a RANKL-dependent inducer of cell death in osteoclasts
Cited by: 29
Author(s): Jezrom B. Fordham, Katherine Guilfoyle, Afsar Raza Naqvi, Salvador Nares
Software Mentions: 1
Published: over 10 years ago

10.1038/cdd.2014.217

CD95 promotes metastatic spread via Sck in pancreatic ductal adenocarcinoma
Cited by: 43
Author(s): Marcin Teodorczyk, Susanne Kleber, Damian Wollny, Julian P. Sefrin, B. Aykut, Álvaro Mateos, Peter Herhaus, Ignacio Sancho‐Martinez, Oliver Hill, Christian Gieffers, Jaromir Sykora, Wilko Weichert, Christian Eisen, Andreas Trumpp, Martin R. Sprick, Frank Bergmann, Thilo Welsch, Ana Martin‐Villalba
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pbio.0020258

Interdependency of Brassinosteroid and Auxin Signaling in Arabidopsis
Cited by: 525
Author(s): Jennifer L. Nemhauser, Todd C. Mockler, Joanne Chory
Software Mentions: 1
Published: about 22 years ago

10.1186/s13104-018-4020-3

Transcriptomes of microglia in experimental cerebral malaria in mice in the presence and absence of Type I Interferon signaling
Cited by: 5
Author(s): Carlos Talavera-López, Barbara Capuccini, Richard Mitter, Jing-wen Lin, Jean Langhorne
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep26363

Transcriptome shock invokes disruption of parental expression-conserved genes in tetraploid wheat
Cited by: 19
Author(s): Huakun Zhang, Xiaowan Gou, Ai Zhang, Xutong Wang, Na Zhao, Yuzhu Dong, Linfeng Li, Liu B
Software Mentions: 1
Published: over 10 years ago

10.1038/srep26830

A neuroendocrine role for chemerin in hypothalamic remodelling and photoperiodic control of energy balance
Cited by: 44
Author(s): Gisela Helfer, Alexander Ross, Lynn Thomson, Claus Mayer, Patrick N. Stoney, Peter McCaffery, Peter J. Morgan
Software Mentions: 1
Published: over 10 years ago

10.1186/s12964-019-0463-y

Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion
Cited by: 17
Author(s): Sini K. Eerola, Niina M. Santio, Sanni Rinne, Petri Kouvonen, Garry L. Corthals, Mauro Scaravilli, Giovanni Scala, Angela Serra, Dario Greco, Pekka Ruusuvuori, Leena Latonen, Eeva-Marja Rainio, Tapio Visakorpi, Päivi J. Koskinen
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0044609

In Vivo Functional Requirement of the Mouse Ifitm1 Gene for Germ Cell Development, Interferon Mediated Immune Response and Somitogenesis
Cited by: 10
Author(s): Ingeborg Klymiuk, Lukas Kenner, Thure Adler, Dirk H. Busch, Auke Boersma, Martin Irmler, Valérie Gailus‐Durner, Helmut Fuchs, Nicole R. Leitner, Mathias Müller, Ralf Kühn, Michaela Schlederer, Irina Treise, Martin Hrabé de Angelis, Johannes Beckers
Software Mentions: 1
Published: almost 14 years ago

10.1038/srep27059

Non integrative strategy decreases chromosome instability and improves endogenous pluripotency genes reactivation in porcine induced pluripotent-like stem cells
Cited by: 14
Author(s): Annabelle Congras, Harmonie Barasc, Kamila Canale-Tabet, Florence Plisson-Petit, Chantal Delcros, Olivier Féraud, Noufϊssa Oudrhiri, Éva Hadadi, Franck Griscelli, Annelise Bennaceur-Griscelli, Ali G. Turhan, Marielle Afanassieff, Stéphane Ferchaud, Alain Pinton, Martine Yerle-Bouissou, Hervé Acloque
Software Mentions: 1
Published: over 10 years ago

10.1038/srep27221

Annexin A5 is the Most Abundant Membrane-Associated Protein in Stereocilia but is Dispensable for Hair-Bundle Development and Function
Cited by: 24
Author(s): Jocelyn F. Krey, Meghan C. Drummond, Sarah Foster, Edward Porsov, Sarath Vijayakumar, Dongseok Choi, Karen H. Friderici, Sherri M. Jones, Alfred L. Nuttall, Peter G. Barr-Gillespie
Software Mentions: 1
Published: over 10 years ago

10.1186/s13578-021-00531-6

Neural stemness contributes to cell tumorigenicity
Cited by: 13
Author(s): Liyang Xu, Min Zhang, Lihua Shi, Xiaoli Yang, Lü Chen, Ning Cao, Anhua Lei, Ying Cao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0087740

Tolerogenic Properties of Lymphatic Endothelial Cells Are Controlled by the Lymph Node Microenvironment
Cited by: 79
Author(s): Jarish N. Cohen, Eric F. Tewalt, Sherin J. Rouhani, Erica L. Buonomo, Amber N. Bruce, Xiaojiang Xu, Stefan Bekiranov, Yang–Xin Fu, Víctor H. Engelhard
Software Mentions: 1
Published: over 12 years ago

10.1155/2020/4710780

Differential Expression and Bioinformatic Analysis of the circRNA Expression in Migraine Patients
Cited by: 2
Author(s): Jinghan Lin, Shanshan Shi, Qihui Chen, Yuning Pan
Software Mentions: 1
Published: almost 6 years ago

10.14814/phy2.12661

Novel hepatic microRNAs upregulated in human nonalcoholic fatty liver disease
Cited by: 37
Author(s): Jarkko Soronen, Hannele Yki‐Järvinen, You Zhou, Sanja Sädevirta, Antti‐Pekka Sarin, Marja Leivonen, Ksenia Sevastianova, Julia Perttilä, Pirkka‐Pekka Laurila, Alexander Sigrüener, Gerd Schmitz, Vesa M. Olkkonen
Software Mentions: 1
Published: over 10 years ago

10.3390/membranes11090674

Bioinformatic Analysis of ABCA1 Gene Expression in Smoking and Chronic Obstructive Pulmonary Disease
Cited by: 4
Author(s): Stanislav Kotlyarov, Anna Kotlyarova
Software Mentions: 1
Published: about 5 years ago

10.1038/srep29105

Microbial biotransformation of DON: molecular basis for reduced toxicity
Cited by: 117
Author(s): Alix Pierron, Sabria Mimoun, Letı́cia Sayuri Murate, Nicolas Loiseau, Yannick Lippi, Ana-Paula F. L. Bracarense, Gerd Schatzmayr, Jianlin He, Ting Zhou, Wulf-Dieter Moll, Isabelle P. Oswald
Software Mentions: 1
Published: about 10 years ago

10.1111/acel.12229

Gene profiling reveals association between altered Wnt signaling and loss of T-cell potential with age in human hematopoietic stem cells
Cited by: 13
Author(s): Melissa Khoo, Stephen M. Carlin, Mark Lutherborrow, Vivek Jayaswal, D. F. David, John J. Moore
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0086490

Genome and Transcriptome Analysis of the Basidiomycetous Yeast Pseudozyma antarctica Producing Extracellular Glycolipids, Mannosylerythritol Lipids
Cited by: 34
Author(s): Tomotake Morita, Hideaki Koike, Hiroko Hagiwara, Emi Ito, Masayuki Machida, Shun Sato, Hiroshi Habe, Daï Kitamoto
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0198055

Construction and analysis of mRNA, miRNA, lncRNA, and TF regulatory networks reveal the key genes associated with prostate cancer
Cited by: 55
Author(s): Yun Ye, Su-Liang Li, Shengyu Wang
Software Mentions: 1
Published: about 8 years ago

10.1186/1741-7007-11-123

The global translation profile in a ribosomal protein mutant resembles that of an eIF3 mutant
Cited by: 21
Author(s): Bayu Sisay Tiruneh, Byung–Hoon Kim, Daniel Gallie, Bijoyita Roy, Albrecht G. von Arnim
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0003279

Single-Species Microarrays and Comparative Transcriptomics
Cited by: 17
Author(s): Frédéric J. J. Chain, Dora Ilieva, Ben Evans
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0029907

Genome-Wide Analyses of Nkx2-1 Binding to Transcriptional Target Genes Uncover Novel Regulatory Patterns Conserved in Lung Development and Tumors
Cited by: 42
Author(s): Jean-Bosco Tagne, Sumeet Gupta, Adam C. Gower, Steven S. Shen, Saaket Varma, Meenakshi Lakshminarayanan, Yuxia Cao, Avrum Spira, Thomas L. Volkert, María I. Ramirez
Software Mentions: 1
Published: over 14 years ago

10.3390/ijms21124315

Artificial Sporulation Induction (ASI) by kinA Overexpression Affects the Proteomes and Properties of Bacillus subtilis Spores
Cited by: 5
Author(s): Zhiwei Tu, Wishwas Abhyankar, Bhagyashree N. Swarge, Nicole N. van der Wel, Gertjan Kramer, Stanley Brul, Leo J. de Koning
Software Mentions: 1
Published: about 6 years ago

Projects: bioconductor: limma

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Papers Mentioning limma 7,776