bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0169286

Molecular Characteristics of High-Dose Melphalan Associated Oral Mucositis in Patients with Multiple Myeloma: A Gene Expression Study on Human Mucosa
Cited by: 10
Author(s): Mette Marcussen, Julie Støve Bødker, Henrik Bærbak Christensen, Preben Johansen, Søren Laurentius Nielsen, Ilse Christiansen, Olav J. Bergmann, Martin Bøgsted, Karen Dybkær, Mogens Vyberg, Hans Erik Johnsen
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0180660

A three-microRNA signature as a diagnostic and prognostic marker in clear cell renal cancer: An In Silico analysis
Cited by: 30
Author(s): Bin Liang, Jianying Zhao, Xuan Wang
Software Mentions: 1
Published: about 9 years ago

10.7150/thno.43145

Renal tubular Bim mediates the tubule-podocyte crosstalk via NFAT2 to induce podocyte cytoskeletal dysfunction
Cited by: 9
Author(s): Chunmei Xu, Xiaojun Zhou, Tianyue Xie, Yuan Zhou, Qian Zhang, Shan Jiang, Rui Zhang, Lin Liao, Jianjun Dong
Software Mentions: 1
Published: over 6 years ago

10.7150/thno.45003

Sirt6 deficiency aggravates angiotensin II-induced cholesterol accumulation and injury in podocytes
Cited by: 29
Author(s): Qian Yang, Jijia Hu, Yingjie Yang, Zhaowei Chen, Jun Feng, Zijing Zhu, Huiming Wang, Dingping Yang, Wei Liang, Guohua Ding
Software Mentions: 1
Published: over 6 years ago

10.1186/s12884-021-03777-7

Differential circular RNA expression profiles in umbilical cord blood exosomes from preeclampsia patients
Cited by: 7
Author(s): Mingtao Cao, Juan Wen, Chaozhi Bu, Chunyan Li, Yongcheng Lin, Hong Zhang, Yanfang Gu, Zhonghua Shi, Yan Zhang, Wei Long, Le Zhang
Software Mentions: 1
Published: over 5 years ago

10.3390/nu11020232

β-Cryptoxanthin Reduces Body Fat and Increases Oxidative Stress Response in Caenorhabditis elegans Model
Cited by: 18
Author(s): Silvia Llopis, María Jesús Rodrigo, Núria González, Salvador Genovés, Lorenzo Zacarı́as, Daniel Ramón, Patricia Martorell
Software Mentions: 1
Published: over 7 years ago

10.3390/genes7120124

microRNA Expression in Sentinel Nodes from Progressing Melanoma Patients Identifies Networks Associated with Dysfunctional Immune Response
Cited by: 8
Author(s): Viviana Vallacchi, Chiara Camisaschi, Matteo Dugo, Elisabetta Vergani, Paola Deho, Ambra Vittoria Gualeni, Veronica Huber, Annunziata Gloghini, Andrea Maurichi, Mario Santinami, Marialuisa Sensi, Chiara Castelli, Licia Rivoltini, Monica Rodolfo
Software Mentions: 1
Published: almost 10 years ago

10.3390/genes8010044

Tissue Non-Specific Genes and Pathways Associated with Diabetes: An Expression Meta-Analysis
Cited by: 9
Author(s): Hao Mei, Lianna Li, Shijian Liu, Fan Jiang, Michael Griswold, Thomas H. Mosley
Software Mentions: 1
Published: over 9 years ago

10.3390/genes8030086

Systematic Identification and Assessment of Therapeutic Targets for Breast Cancer Based on Genome-Wide RNA Interference Transcriptomes
Cited by: 9
Author(s): Yang Liu, Xiaoyao Yin, Jing Zhong, Naiyang Guan, Zhigang Luo, Min Lü, Xing Yao, Xiaochen Bo, Licheng Dai, Hui Bai
Software Mentions: 1
Published: over 9 years ago

10.3390/genes9070350

Ensemble Consensus-Guided Unsupervised Feature Selection to Identify Huntington’s Disease-Associated Genes
Cited by: 6
Author(s): Xia Guo, Xue Jiang, Jing Xu, Xiongwen Quan, Min Wu, Han Zhang
Software Mentions: 1
Published: about 8 years ago

10.3390/genes9080380

A Herpes Simplex Virus Thymidine Kinase-Induced Mouse Model of Hepatocellular Carcinoma Associated with Up-Regulated Immune-Inflammatory-Related Signals
Cited by: 4
Author(s): Zhijuan Gong, Qiang Ma, Xujun Wang, Qing Cai, Xiaohua Gong, Georgi Z. Genchev, Hui Lu, Fanyi Zeng
Software Mentions: 1
Published: about 8 years ago

10.7150/thno.44877

A novel miR-1291-ERRα-CPT1C axis modulates tumor cell proliferation, metabolism and tumorigenesis
Cited by: 29
Author(s): Yixin Chen, Yanying Zhou, Fangwei Han, Ying-Yuan Zhao, Meijuan Tu, Yong Tao Wang, Can Huang, Shicheng Fan, Panpan Chen, Xinpeng Yao, Lihuan Guan, Ai Ming Yu, Frank J. Gonzalez, Min Huang, Huichang Bi
Software Mentions: 1
Published: over 6 years ago

10.3390/genes9120588

Systems Analysis of Transcriptomic and Proteomic Profiles Identifies Novel Regulation of Fibrotic Programs by miRNAs in Pulmonary Fibrosis Fibroblasts
Cited by: 24
Author(s): Steven Mullenbrock, Fei Liu, Suzanne Szak, Xiaoping Hronowski, Benbo Gao, Péter Juhász, Chao Sun, Mei Liu, Helen McLaughlin, Qingqing Xiao, Carol Feghali‐Bostwick, Timothy S. Zheng
Software Mentions: 1
Published: almost 8 years ago

10.3390/genes10010045

Network Analyses of Integrated Differentially Expressed Genes in Papillary Thyroid Carcinoma to Identify Characteristic Genes
Cited by: 9
Author(s): Junliang Shang, Dali Qian, Shasha Yuan, Jin-Xing Liu, Feng Li, Honghai Zhang
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0086296

Transcriptomic Analysis of Liquid Non-Sporulating Streptomyces coelicolor Cultures Demonstrates the Existence of a Complex Differentiation Comparable to That Occurring in Solid Sporulating Cultures
Cited by: 39
Author(s): Paula Yagüe, Antonio Rodríguez‐García, María Teresa López-García, Beatriz Rioseras, Juan F. Martı́n, Jesús Sánchez, Ángel Manteca
Software Mentions: 1
Published: over 12 years ago

10.3390/vaccines9070799

Association of Transcriptomic Signatures of Inflammatory Response with Viral Control after Dendritic Cell-Based Therapeutic Vaccination in HIV-1 Infected Individuals
Cited by: 3
Author(s): Csaba Fehér, Roque Pastor-lbáñez, Lorna Leal, Montserrat Plana, Mireia Arnedo, Henk-Jan van den Ham, Arno C. Andeweg, Rob A. Gruters, Francisco Díez-Fuertes, José Alcamı́, Patrick Aloy, Felipe García
Software Mentions: 1
Published: about 5 years ago

10.1186/s12870-016-0740-5

Fusarium oxysporum f.sp. radicis-lycopersici induces distinct transcriptome reprogramming in resistant and susceptible isogenic tomato lines
Cited by: 40
Author(s): Daniele Manzo, Francesca Ferriello, Gerardo Puopolo, A. Zoina, Daniela D’Esposito, Luca Tardella, Alberto Ferrarini, Maria Raffaella Ercolano
Software Mentions: 1
Published: over 10 years ago

10.3892/mmr.2015.3277

Screening and functional pathway analysis of genes associated with pediatric allergic asthma using a DNA microarray
Cited by: 9
Author(s): Liqun Lu, Wei Liao
Software Mentions: 1
Published: over 11 years ago

10.3390/genes10120962

Computational Inference of Gene Co-Expression Networks for the identification of Lung Carcinoma Biomarkers: An Ensemble Approach
Cited by: 4
Author(s): Fernando M. Delgado-Chaves, Francisco Gómez-Vela, Miguel García-Torres, José Luis Vázquez Noguera
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12967-020-02367-z

High methylation of lysine acetyltransferase 6B is associated with the Cobb angle in patients with congenital scoliosis
Cited by: 9
Author(s): Yuantao Wu, Hongqi Zhang, Mingxing Tang, Chaofeng Guo, Ang Deng, Jiong Li, Yunjia Wang, Lairong Xiao, Guanteng Yang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0025674

Improved NYVAC-Based Vaccine Vectors
Cited by: 63
Author(s): Karen V. Kibler, Carmen Elena Gómez, Beatriz Perdiguero, Shukmei Wong, Tony L. Huynh, Susan A. Holechek, William Arndt, Victoria Jiménez, Rubén González-Sanz, Karen L. Denzler, Elias K. Haddad, Ralf Wagner, Rafick Pierre Sékaly, James Tartaglia, Giuseppe Pantaleo, Bertram L. Jacobs, Mariano Esteban
Software Mentions: 1
Published: almost 15 years ago

10.7150/thno.47239

circPTCH1 promotes invasion and metastasis in renal cell carcinoma via regulating miR-485-5p/MMP14 axis
Cited by: 49
Author(s): Huan Liu, Guanghui Hu, Zaoyu Wang, Qunlong Liu, Jin Zhang, Yonghui Chen, Yiran Huang, Wei Xue, Yunfei Xu, Wei Zhai
Software Mentions: 1
Published: over 6 years ago

10.7150/thno.48264

Circular RNA circPPM1F modulates M1 macrophage activation and pancreatic islet inflammation in type 1 diabetes mellitus
Cited by: 92
Author(s): Caiyan Zhang, Xiao Han, Lan Yang, Jinrong Fu, Chengjun Sun, Saihua Huang, Wenfeng Xiao, Yajing Gao, Qiuyan Liang, Xiang Wang, Feihong Luo, Wei Lü, Yufeng Zhou
Software Mentions: 1
Published: over 6 years ago

10.3390/nu11030544

Similar Weight Loss Induces Greater Improvements in Insulin Sensitivity and Liver Function among Individuals with NAFLD Compared to Individuals without NAFLD
Cited by: 7
Author(s): Ruth Schübel, Tobias Nonnenmacher, Disorn Sookthai, Sandra González Maldonado, Solomon A Sowah, Oyunbileg von Stackelberg, Christopher L. Schlett, Mirja Grafetstätter, Diana Nabers, Theron Johnson, Romy Kirsten, Cornelia M. Ulrich, Rudolf Kaaks, Hans‐Ulrich Kauczor, Tilman Kühn, Johanna Nattenmüller
Software Mentions: 1
Published: over 7 years ago

10.1111/j.1460-9568.2011.07896.x

Differential gene expression in migratory streams of cortical interneurons
Cited by: 42
Author(s): Mary Antypa, Clare Faux, Gregor Eichele, John G. Parnavelas, William D. Andrews
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-13-173

Genome-wide expression profiling shows transcriptional reprogramming in Fusarium graminearum by Fusarium graminearum virus 1-DK21 infection
Cited by: 33
Author(s): Won Kyong Cho, Jisuk Yu, Kyung-Mi Lee, Moonil Son, Kyung-Hee Min, Yin-Won Lee, Kook‐Hyung Kim
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2229-14-108

Day and night heat stress trigger different transcriptomic responses in green and ripening grapevine (vitis vinifera) fruit
Cited by: 134
Author(s): Markus Rienth, Laurent Torregrosa, Nathalie Luchaire, Ratthaphon Chatbanyong, David Lecourieux, Mary T. Kelly, Charles Romieu
Software Mentions: 1
Published: over 12 years ago

10.3390/genes11080908

A Four-Methylated lncRNAs-Based Prognostic Signature for Hepatocellular Carcinoma
Cited by: 9
Author(s): Leen Liao, Dandan Hu, Yun Zheng
Software Mentions: 1
Published: about 6 years ago

10.7150/thno.48739

Hypermethylation of GNA14 and its tumor-suppressive role in hepatitis B virus-related hepatocellular carcinoma
Cited by: 16
Author(s): Guangyuan Song, Xiaomei Zhu, Zefeng Xuan, Long Zhao, Haijiang Dong, Jian Chen, Zequn Li, Wenfeng Song, Cheng Jin, Mingmei Zhou, Haiyang Xie, Shusen Zheng, Penghong Song
Software Mentions: 1
Published: over 5 years ago

10.1186/s40001-014-0057-5

Construction of microRNA and transcription factor regulatory network based on gene expression data in cardiomyopathy
Cited by: 3
Author(s): Lei Wang, Jihua Hu, Haijian Xing, Mengjia Sun, Juanli Wang, Qiang Jin, Hua Yang
Software Mentions: 1
Published: almost 12 years ago

10.1002/eji.201948151

Deoxyguanosine is a TLR7 agonist
Cited by: 17
Author(s): Tamara Davenne, Anne Bridgeman, Rachel E. Rigby, Jan Rehwinkel
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12967-018-1577-5

Identification of an early diagnostic biomarker of lung adenocarcinoma based on co-expression similarity and construction of a diagnostic model
Cited by: 7
Author(s): Zhirui Fan, Wenhua Xue, Lifeng Li, Chaoqi Zhang, Jingli Lü, Yunkai Zhai, Zhenhe Suo, Jie Zhao
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms21217812

Circular RNAs and Their Linear Transcripts as Diagnostic and Prognostic Tissue Biomarkers in Prostate Cancer after Prostatectomy in Combination with Clinicopathological Factors
Cited by: 6
Author(s): Hannah Rochow, Monika Jung, Sabine Weickmann, Bernhard Ralla, Carsten Stephan, Sefer Elezkurtaj, Ergin Kilic, Zhao Zhi, Klaus Jung, Annika Fendler, Antonia Franz
Software Mentions: 1
Published: almost 6 years ago

10.7150/thno.45157

Genome-wide study of salivary miRNAs identifies miR-423-5p as promising diagnostic and prognostic biomarker in oral squamous cell carcinoma
Cited by: 31
Author(s): Chiara Romani, Elisa Salviato, Alberto Paderno, Laura Zanotti, Antonella Ravaggi, Alberto Deganello, Giulia Berretti, Tommaso Gualtieri, Sergio Marchini, Maurizio D’Incalci, Davide Mattavelli, Cesare Piazza, Paolo Bossi, Chiara Romualdi, Piero Nicolai, Eliana Bignotti
Software Mentions: 1
Published: over 5 years ago

10.3892/mmr.2015.3701

Gene expression profiling via bioinformatics analysis reveals biomarkers in laryngeal squamous cell carcinoma
Cited by: 7
Author(s): Guofang Guan, Ying Zheng, Lianji Wen, Dejun Zhang, Duo‐Jiao Yu, Yan-qing Lu, Zhao Yan, Hui Zhang
Software Mentions: 1
Published: over 11 years ago

10.3390/genes11101193

Campylobacter jejuni Cas9 Modulates the Transcriptome in Caco-2 Intestinal Epithelial Cells
Cited by: 9
Author(s): Chinmoy Saha, Deborah Horst-Kreft, Inez Kross, Peter J. van der Spek, Rogier Louwen, Peter van Baarlen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-015-1772-1

Integrated analyses of zebrafish miRNA and mRNA expression profiles identify miR-29b and miR-223 as potential regulators of optic nerve regeneration
Cited by: 30
Author(s): Paula I. Fuller-Carter, Kim W. Carter, Denise Anderson, Alan R. Harvey, Keith M. Giles, Jennifer Rodger
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2229-11-120

Global transcriptome analysis of two ameiotic1 alleles in maize anthers: defining steps in meiotic entry and progression through prophase I
Cited by: 28
Author(s): Guo-Ling Nan, Arnaud Ronceret, Rachel Wang, John Fernandes, W. Zacheus Cande, Virginia Walbot
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0135605

Next Generation Sequencing Analysis Reveals Segmental Patterns of microRNA Expression in Mouse Epididymal Epithelial Cells
Cited by: 42
Author(s): Brett Nixon, Simone J. Stanger, Bettina P. Mihalas, Jackson N. Reilly, Andy Anderson, Matthew D. Dun, Sonika Tyagi, Janet E. Holt, Eileen A. McLaughlin
Software Mentions: 1
Published: about 11 years ago

10.1002/eji.201545789

Depletion of CD11c + cells in the CD11c.DTR model drives expansion of unique CD64 + Ly6C + monocytes that are poised to release TNF‐α
Cited by: 10
Author(s): S Sivakumaran, Stephen Henderson, Sophie Ward, Pedro M. Sousa, Teresa Manzo, Lei Zhang, Thomas Conlan, Terry K. Means, Maud d’Aveni, Olivier Hermine, Marie‐Thérèse Rubio, Ronjon Chakraverty, Clare Bennett
Software Mentions: 1
Published: almost 11 years ago

10.3892/mmr.2015.3565

Identification of therapeutic targets for breast cancer using biological informatics methods
Cited by: 13
Author(s): Xuejian Liu, Yue Ma, Wenchuan Yang, Xia Wu, Lihua Jiang, Xiangli Chen
Software Mentions: 1
Published: over 11 years ago

10.1128/EC.00335-13

High-Throughput Chemical Screening for Antivirulence Developmental Phenotypes in Trypanosoma brucei
Cited by: 9
Author(s): Paula MacGregor, Alasdair Ivens, Steven Shave, Iain T. Collie, David W. Gray, Manfred Auer, Keith R. Matthews
Software Mentions: 1
Published: over 12 years ago

10.1186/s12967-021-02709-5

KPNA2 interaction with CBX8 contributes to the development and progression of bladder cancer by mediating the PRDM1/c-FOS pathway
Cited by: 15
Author(s): Fanchang Zeng, Liumei Luo, Daoyuan Li, Juncheng Guo, Min Guo
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12020307

Epigenetic Regulation of Processes Related to High Level of Fibroblast Growth Factor 21 in Obese Subjects
Cited by: 7
Author(s): Teresa Płatek, Anna Polus, Joanna Góralska, Urszula Raźny, Agnieszka Dziewońska, Agnieszka Micek, A. Dembińska-Kieć, Bogdan Solnica, Małgorzata Malczewska-Malec
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0179797

The RNA uridyltransferase Zcchc6 is expressed in macrophages and impacts innate immune responses
Cited by: 10
Author(s): Elyse Kozlowski, Gregory A. Wasserman, Marcos Morgan, Dónal O’Carroll, Nora-Guadalupe P. Ramirez, Suryaram Gummuluru, Jasmine Rah, Adam C. Gower, Michael H. Ieong, Lee J. Quinton, Joseph P. Mizgerd, Matthew R. Jones
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms21144913

A Possible Role for Arylsulfatase G in Dermatan Sulfate Metabolism
Cited by: 2
Author(s): Aleksandra Poterała-Hejmo, Adam Gołda, Marcin Pacholczyk, Sebastian Student, Anna Tylki‐Szymańska, Anna Lalik
Software Mentions: 1
Published: about 6 years ago

10.1016/j.molmet.2020.100997

Hepatic expression of lipopolysaccharide-binding protein (Lbp) is induced by the gut microbiota through Myd88 and impairs glucose tolerance in mice independent of obesity
Cited by: 10
Author(s): Antonio Molinaro, Ara Koh, Hao Wu, Marc Schoeler, Maria Ilaria Faggi, Alba Carreras, Anna Hallén, Fredrik Bäckhed, Robert Caesar
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0031777

Endoplasmic Reticulum Stress-Sensing Mechanism Is Activated in Entamoeba histolytica upon Treatment with Nitric Oxide
Cited by: 55
Author(s): Julien Santi-Rocca, Spenser S. Smith, Christian Weber, Erika Pineda, Chung-Chau Hon, Emma Saavedra, Alfonso Olivos-García, Sandrine Rousseau, Marie‐Agnès Dillies, Jean‐Yves Coppée, Nancy Guillén
Software Mentions: 1
Published: over 14 years ago

10.1186/s12870-020-2317-6

Comparative transcriptome analyses of fruit development among pears, peaches, and strawberries provide new insights into single sigmoid patterns
Cited by: 18
Author(s): Mao-Song Pei, Suhao Cao, Lei Wu, Guo‐Ming Wang, Zhihua Xie, Chao Gu, Shaoling Zhang
Software Mentions: 1
Published: over 6 years ago

10.1111/mmi.13460

Phytohormone sensing in the biotrophic fungusUstilago maydis– the dual role of the transcription factor Rss1
Cited by: 14
Author(s): Franziska Rabe, Denise Seitner, Lisa Bauer, Fernando Navarrete, Angelika Czedik‐Eysenberg, Fernando A. Rabanal, Armin Djamei
Software Mentions: 1
Published: about 10 years ago

10.3390/nu12123864

An Integrated Analysis of miRNA and Gene Expression Changes in Response to an Obesogenic Diet to Explore the Impact of Transgenerational Supplementation with Omega 3 Fatty Acids
Cited by: 5
Author(s): Karla Fabiola Corral-Jara, Laura Cantini, Nathalie Poupin, Tao Ye, Jean‐Paul Rigaudière, Sarah de Saint Vincent, Alexandre Pinel, Béatrice Morio, Frédéric Capel
Software Mentions: 1
Published: over 5 years ago

10.1523/ENEURO.0310-19.2019

TrkB Signaling Influences Gene Expression in Cortistatin-Expressing Interneurons
Cited by: 8
Author(s): Kristen R. Maynard, Alisha Kardian, Joanne M. Hill, Yishan Mai, Brianna K. Barry, Henry L. Hallock, Andrew E. Jaffe
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-14-869

TE-array—a high throughput tool to study transposon transcription
Cited by: 12
Author(s): Veena P. Gnanakkan, Andrew E. Jaffe, Lixin Dai, Jie Fu, Sarah J. Wheelan, Hyam I. Levitsky, Jef D. Boeke, Kathleen H. Burns
Software Mentions: 1
Published: almost 13 years ago

10.1186/s13072-019-0283-8

Aberrant methylation-mediated downregulation of lncRNA SSTR5-AS1 promotes progression and metastasis of laryngeal squamous cell carcinoma
Cited by: 30
Author(s): Baoshan Wang, Lei Zhao, Weiwei Chi, Huấn Cao, Weina Cui, Wenxia Meng
Software Mentions: 1
Published: over 7 years ago

10.1080/15592294.2017.1367475

Variability of genome-wide DNA methylation and mRNA expression profiles in reproductive and endocrine disease related tissues
Cited by: 32
Author(s): Nilüfer Rahmioğlu, Alexander W. Drong, Helen Lockstone, Thomas T. Tapmeier, Karin Hellner, Merli Saare, Triin Laisk-Podar, Christine Dew, Emily Tough, George Nicholson, Maire Peters, Andrew P. Morris, Cecilia M. Lindgren, Christian M. Becker, Krina T. Zondervan
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12967-020-02549-9

Bioinformatic gene analysis for potential therapeutic targets of Huntington’s disease in pre-symptomatic and symptomatic stage
Cited by: 6
Author(s): Chunchen Xiang, Shengri Cong, Bin Liang, Shuyan Cong
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-15-709

Uncovering molecular events associated with the chemosuppressive effects of flaxseed: a microarray analysis of the laying hen model of ovarian cancer
Cited by: 13
Author(s): Karen Hales, Sheree C. Speckman, Nawneet K. Kurrey, Dale B. Hales
Software Mentions: 1
Published: over 12 years ago

10.1007/s12263-014-0390-x

Vitamin C supplementation modulates gene expression in peripheral blood mononuclear cells specifically upon an inflammatory stimulus: a pilot study in healthy subjects
Cited by: 32
Author(s): Raffaella Canali, Lucia Natarelli, Guido Leoni, Elena Azzini, Raffaella Comitato, Oezgur Sancak, Luca Barella, Fabio Virgili
Software Mentions: 1
Published: over 12 years ago

10.1136/thoraxjnl-2015-207236

Latrophilin receptors: novel bronchodilator targets in asthma
Cited by: 12
Author(s): Alen Faiz, Chantal Donovan, Maartje A.E. Nieuwenhuis, Maarten van den Berge, Dirkje S. Postma, Sean Yao, C Y Park, Robert Hirsch, J. J. Fredberg, Gavin Tjin, Andrew J. Halayko, Karen Limbert Rempel, Jeremy P. T. Ward, Tak H. Lee, Yohan Bossé, David C. Nickle, Ma’en Obeidat, Judith M. Vonk, Judith L. Black, Brian G. Oliver, Ramaswamy Krishnan, Brian J. McParland, Jane E. Bourke, Janette K. Burgess
Software Mentions: 1
Published: about 10 years ago

10.1186/s12263-019-0644-8

Effect of gestational oily fish intake on the risk of allergy in children may be influenced by FADS1/2, ELOVL5 expression and DNA methylation
Cited by: 13
Author(s): Purevsuren Losol, Faisal I. Rezwan, Veeresh Patil, Carina Venter, Susan Ewart, Hongmei Zhang, Syed Hasan Arshad, Wilfried Karmaus, John W. Holloway
Software Mentions: 1
Published: about 7 years ago

10.1080/15592294.2020.1788325

Epigenome-wide cross-tissue correlation of human bone and blood DNA methylation – can blood be used as a surrogate for bone?
Cited by: 17
Author(s): Parvaneh Ebrahimi, Holger Luthman, Fiona McGuigan, Kristina Åkesson
Software Mentions: 1
Published: about 6 years ago

10.1007/s11356-019-05350-4

Correlation between pri-miR-124 (rs531564) polymorphism and congenital heart disease susceptibility in Chinese population at two different altitudes: a case-control and in silico study
Cited by: 10
Author(s): Wenke Yang, Kang Yi, Hongmiao Yu, Yunhan Ding, Dehong Li, Wei Ye, Tao You, Xiaodong Xie
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0063824

Large Scale Expression Changes of Genes Related to Neuronal Signaling and Developmental Processes Found in Lateral Septum of Postpartum Outbred Mice
Cited by: 27
Author(s): Brian E. Eisinger, Changjiu Zhao, Terri M. Driessen, Michael C. Saul, Stephen C. Gammie
Software Mentions: 1
Published: over 13 years ago

10.1289/ehp.11647

One-Month Diesel Exhaust Inhalation Produces Hypertensive Gene Expression Pattern in Healthy Rats
Cited by: 54
Author(s): Reddy R. Gottipolu, J. Grace Wallenborn, Edward D. Karoly, Mette C. Schladweiler, Allen D. Ledbetter, Todd Krantz, William P. Linak, Abraham Nyska, Johnny A. Johnson, Ronald F. Thomas, Judy E. Richards, Richard H. Jaskot, Urmila P. Kodavanti
Software Mentions: 1
Published: over 17 years ago

10.1016/j.toxrep.2019.09.010

Cross-species comparison of CAR-mediated procarcinogenic key events in a 3D liver microtissue model
Cited by: 6
Author(s): Simon Plummer, Bobby Beaumont, Stephanie Jean Wallace, Graeme Ball, Jayne Wright, Elizabeth McInnes, Richard A. Currie, Rich Peffer, David E. Cowie
Software Mentions: 1
Published: over 7 years ago

10.1289/ehp.9556

Up-regulation of Tissue Factor in Human Pulmonary Artery Endothelial Cells after Ultrafine Particle Exposure
Cited by: 59
Author(s): Edward D. Karoly, Zhuowei Li, Lisa A. Dailey, Xhevahire Hyseni, Yuh‐Chin T. Huang
Software Mentions: 1
Published: over 19 years ago

10.1289/ehp.8419

Proteomic Evaluation of Neonatal Exposure to 2,2′,4,4′,5-Pentabromodiphenyl Ether
Cited by: 68
Author(s): Henrik Alm, Birger Scholz, Celia Fischer, Kim Kultima, Henrik Viberg, Per Eriksson, Lennart Dencker, Michael Stigson
Software Mentions: 1
Published: over 20 years ago

10.1186/s12940-016-0202-4

Long-term outdoor air pollution and DNA methylation in circulating monocytes: results from the Multi-Ethnic Study of Atherosclerosis (MESA)
Cited by: 57
Author(s): C. Gloria, Yongmei Liu, James W. MacDonald, R. Graham Barr, Kathleen Donohue, Mark Hensley, Lifang Hou, Charles E. McCall, Lindsay M. Reynolds, David S. Siscovick, Joel D. Kaufman
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.gdata.2016.01.016

Microarray analysis of kiwifruit ( Actinidia chinensis ) bark following challenge by the sucking insect Hemiberlesia lataniae (Hemiptera: Diaspididae)
Cited by: 0
Author(s): M. G. Hill, Kirstin Wurms, Marcus Davy, Elaine M. Gould, Andrew C. Allan, N. A. Mauchline, Zhiwei Luo, A. Ah Chee, Kate Stannard, Roy Storey, Erik H. A. Rikkerink
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-15-1085

Deciphering regulatory variation of THI genes in alcoholic fermentation indicate an impact of Thi3p on PDC1 expression
Cited by: 16
Author(s): Christian Brion, Chloé Ambroset, Pierre Delobel, Isabelle Sanchez, Bruno Blondin
Software Mentions: 1
Published: almost 12 years ago

10.1186/1476-069X-10-5

In utero exposure to butyl benzyl phthalate induces modifications in the morphology and the gene expression profile of the mammary gland: an experimental study in rats
Cited by: 49
Author(s): Raquel Moral, Julia Santucci-Pereira, Thomas J. Wang, Irma H. Russo, Coral A. Lamartiniere, José Russo
Software Mentions: 1
Published: over 15 years ago

10.3390/ijms21155333

The Expression of Cold-Inducible RNA-Binding Protein mRNA in Sow Genital Tract Is Modulated by Natural Mating, But Not by Seminal Plasma
Cited by: 6
Author(s): Jaume Gardela, Mateo Ruiz-Conca, Cristina A. Martínez, Dominic Wright, Manel López‐Béjar, H. Rodrı́guez-Martı́nez, Manuel Álvarez‐Rodríguez
Software Mentions: 1
Published: about 6 years ago

10.1016/j.gdata.2015.05.010

Transcriptional profiling of HOXA9-regulated genes in human glioblastoma cell models
Cited by: 11
Author(s): Céline S. Gonçalves, Ana Xavier‐Magalhães, Marta Pojo, Ana I. Oliveira, Sara Correia, Rui Manuel Reis, Nuno Sousa, Miguel Rocha, Bruno M. Costa
Software Mentions: 1
Published: about 11 years ago

10.1111/j.1365-2958.2012.08192.x

Identification of a complex genetic network underlying <scp>S</scp>accharomyces cerevisiae colony morphology
Cited by: 60
Author(s): Karin Voordeckers, Dries De Maeyer, Elisa van der Zande, Marcelo D. Vinces, Wim Meert, Lore Cloots, Owen Ryan, Kathleen Marchal, Kevin J. Verstrepen
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2229-13-27

Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids
Cited by: 48
Author(s): Hyun Jo Koo, Eric T. McDowell, Xiaoqiang Ma, Kevin Greer, Jeremy Kapteyn, Zhengzhi Xie, Anne Descour, Hye Ran Kim, Yeisoo Yu, David Kudrna, Rod A. Wing, Carol Soderlund, David R. Gang
Software Mentions: 1
Published: over 13 years ago

10.1186/gb-2007-8-1-r2

Cited by: 67
Author(s): Alicia Oshlack, Dianne Emslie, Lynn M. Corcoran, Gordon K. Smyth
Software Mentions: 1
Published: over 19 years ago

10.3390/toxics8010012

Potential of Inactivated Bifidobacterium Strain in Attenuating Benzo(A)Pyrene Exposure-Induced Damage in Colon Epithelial Cells In Vitro
Cited by: 7
Author(s): Mengfan Xu, Lili Fu, Junwen Zhang, Tao Wang, Junfeng Fan, Baoqing Zhu, Piotr Dziugan, Bolin Zhang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0189780

Multigenic DNA vaccine induces protective cross-reactive T cell responses against heterologous influenza virus in nonhuman primates
Cited by: 22
Author(s): Merika Treants Koday, Jolie A. Leonard, Paul V. Munson, Adriana Forero, Michael Koday, Debra Bratt, James T. Fuller, Robert D. Murnane, Shulin Qin, Todd A. Reinhart, Karen Duus, Ilhem Messaoudi, Amy L. Hartman, Kelly Stefano-Cole, Juliet Morrison, Michael G. Katze, Deborah H. Fuller
Software Mentions: 1
Published: over 8 years ago

10.3390/toxins10050199

Saccharomyces cerevisiae Boulardii Reduces the Deoxynivalenol-Induced Alteration of the Intestinal Transcriptome
Cited by: 18
Author(s): Imourana Alassane-Kpémbi, Philippe Pinton, Jean-François Hupé, Manon Neves, Yannick Lippi, Sylvie Combes, Mathieu Castex, Isabelle P. Oswald
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0046584

Gene Expression Profiling Unravels Cancer-Related Hepatic Molecular Signatures in Steatohepatitis but Not in Steatosis
Cited by: 92
Author(s): Julia Starmann, Maria Fälth, W Spindelböck, Katja-Lauren Lanz, Carolin Lackner, Kurt Zatloukal, Michael Trauner, Holger Sültmann
Software Mentions: 1
Published: almost 14 years ago

10.1210/en.2014-1302

Repair-Related Activation of Hedgehog Signaling in Stromal Cells Promotes Intrahepatic Hypothyroidism
Cited by: 43
Author(s): Brittany N. Bohinc, Gregory A. Michelotti, Guanhua Xie, Herbert Pang, Ayako Suzuki, Cynthia D. Guy, Dawn Piercy, Leandi Krüger, Marzena Swiderska‐Syn, Mariana Verdelho Machado, Thiago A. Pereira, Ann Marie Zavacki, Manal F. Abdelmalek, Anna Mae Diehl
Software Mentions: 1
Published: almost 12 years ago

10.3390/toxins12100645

Bacillus cereus Decreases NHE and CLO Exotoxin Synthesis to Maintain Appropriate Proteome Dynamics During Growth at Low Temperature
Cited by: 6
Author(s): Catherine Duport, Ludivine Rousset, Béatrice Alpha-Bazin, Jean Armengaud
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2229-11-173

SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus
Cited by: 135
Author(s): Steven G. Hussey, Eshchar Mizrachi, Antanas Spokevicius, Gerd Bossinger, David Kenneth Berger, Alexander Andrew Myburg
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12967-021-03038-3

Use of proteomics to identify mechanisms of hepatocellular carcinoma with the CYP2D6*10 polymorphism and identification of ANGPTL6 as a new diagnostic and prognostic biomarker
Cited by: 6
Author(s): Guiming Hu, Fei Gao, Guanzhe Wang, Yan Fang, Yuanyuan Guo, Jun Zhou, Yijun Gu, Cunzhen Zhang, Na Gao, Qiang Wen, Huan Qiao
Software Mentions: 1
Published: about 5 years ago

10.1186/gb-2009-10-5-r47

Systemic analysis of the response of Aspergillus niger to ambient pH
Cited by: 100
Author(s): Mikael Rørdam Andersen, Linda Olkjær Lehmann, Jens Nielsen
Software Mentions: 1
Published: over 17 years ago

10.1530/ERC-13-0222

IL6 sensitizes prostate cancer to the antiproliferative effect of IFNα2 through IRF9
Cited by: 25
Author(s): Holger H.H. Erb, Regina V Langlechner, Patrizia Moser, Florian Handle, Tineke Casneuf, Karin Verstraeten, Bettina Schlick, Georg Schäfer, Brett M. Hall, Kate Sasser, Zoran Čulig, Frédéric R. Santer
Software Mentions: 1
Published: about 13 years ago

10.3390/toxins12100621

Indoxyl Sulfate-Mediated Metabolic Alteration of Transcriptome Signatures in Monocytes of Patients with End-Stage Renal Disease (ESRD)
Cited by: 2
Author(s): Hee Young Kim, Su Jeong Lee, Yuri Hwang, Ga Hye Lee, Chae Eun Yoon, Hyeon Chang Kim, Tae Hyun Yoo, Won Woo Lee
Software Mentions: 1
Published: almost 6 years ago

10.1007/s12035-020-02189-6

Constitutive PGC-1α Overexpression in Skeletal Muscle Does Not Contribute to Exercise-Induced Neurogenesis
Cited by: 7
Author(s): Lars Karlsson, María Nazareth González-Alvarado, Reza Motalleb, Yafeng Wang, Yong Wang, Mats Börjesson, Changlian Zhu, H. Georg Kuhn
Software Mentions: 1
Published: almost 6 years ago

10.1186/gb-2010-11-11-r112

Patient-oriented gene set analysis for cancer mutation data
Cited by: 60
Author(s): Simina M. Boca, Kenneth W. Kinzler, Victor E. Velculescu, Bert Vogelstein, Giovanni Parmigiani
Software Mentions: 1
Published: over 16 years ago

10.1007/s12035-016-0334-0

Humoral Immunity Profiling of Subjects with Myalgic Encephalomyelitis Using a Random Peptide Microarray Differentiates Cases from Controls with High Specificity and Sensitivity
Cited by: 17
Author(s): Sahajpreet Singh, Phillip Stafford, Karen Schlauch, Richard R. Tillett, Martin Gollery, Stephen Albert Johnston, Svetlana F. Khaiboullina, Kenny L. De Meirleir, Shanti Rawat, Tatjana Mijatovic, Krishnamurthy Subramanian, András Palotás, Vincent Lombardi
Software Mentions: 1
Published: almost 10 years ago

10.1186/gb-2011-12-7-r64

Small RNA sequencing reveals miR-642a-3p as a novel adipocyte-specific microRNA and miR-30 as a key regulator of human adipogenesis
Cited by: 207
Author(s): Laure‐Emmanuelle Zaragosi, Brigitte Wdziekonski, Kevin Le Brigand, Phi Villageois, Bernard Mari, Rainer Waldmann, Christian Dani, Pascal Barbry
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0141664

Transcriptome Analysis of Kiwifruit (Actinidia chinensis) Bark in Response to Armoured Scale Insect (Hemiberlesia lataniae) Feeding
Cited by: 15
Author(s): M. G. Hill, Kirstin Wurms, Marcus Davy, Elaine M. Gould, Andrew C. Allan, N. A. Mauchline, Zhiwei Luo, A. Ah Chee, Kate Stannard, Roy Storey, Erik H. A. Rikkerink
Software Mentions: 1
Published: almost 11 years ago

10.1186/gb-2011-12-10-r105

Integrating diverse genomic data using gene sets
Cited by: 57
Author(s): Svitlana Tyekucheva, Luigi Marchionni, Rachel Karchin, Giovanni Parmigiani
Software Mentions: 1
Published: over 15 years ago

10.1186/s40035-020-00194-2

Paroxetine ameliorates prodromal emotional dysfunction and late-onset memory deficit in Alzheimer’s disease mice
Cited by: 11
Author(s): Penghui Ai, Si Chen, Xiandong Liu, Xiaona Zhu, Yuan‐Bo Pan, Donghan Feng, Shengdi Chen, Nan‐Jie Xu, Suya Sun
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.1933

The transcriptomic basis of tissue‐ and nutrition‐dependent sexual dimorphism in the beetle Onthophagus taurus
Cited by: 17
Author(s): Cristina C. Ledón‐Rettig, Armin P. Moczek
Software Mentions: 1
Published: over 10 years ago

10.1007/s12035-019-1627-x

Circular RNAs as Potential Blood Biomarkers in Amyotrophic Lateral Sclerosis
Cited by: 40
Author(s): Ana Dolinar, Blaž Koritnik, Damjan Glavač, Metka Ravnik‐Glavač
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0003385

Different Transcriptional Control of Metabolism and Extracellular Matrix in Visceral and Subcutaneous Fat of Obese and Rimonabant Treated Mice
Cited by: 22
Author(s): Carine Poussin, Diana Hall, Kaori Minehira, Anne‐Marie Galzin, David Tarussio, Bernard Thorens
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0007817

The ASH1 HOMOLOG 2 (ASHH2) Histone H3 Methyltransferase Is Required for Ovule and Anther Development in Arabidopsis
Cited by: 101
Author(s): Paul E. Grini, Tage Thorstensen, Vibeke Alm, Gema Vizcay‐Barrena, Susanne Skinnehaugen Windju, Tommy S Jørstad, Zoe A. Wilson, Reidunn B. Aalen
Software Mentions: 1
Published: almost 17 years ago

10.1002/ece3.1565

Scaling nitrogen and carbon interactions: what are the consequences of biological buffering?
Cited by: 4
Author(s): David J. Weston, Alistair Rogers, Timothy J. Tschaplinski, Lee E. Gunter, Sara Jawdy, Nancy L. Engle, Lindsey E. Heady, Gerald A. Tuskan, Stan D. Wullschleger
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2164-14-224

Identification of microRNA-mRNA functional interactions in UVB-induced senescence of human diploid fibroblasts
Cited by: 50
Author(s): Ruth Greussing, Matthias Hackl, Pornpimol Charoentong, Alexander Pauck, Rossella Monteforte, Maria Cavinato, Edith Hofer, Marcel Scheideler, Michael Neuhaus, Lucia Mičutková, Christoph Mueck, Zlatko Trajanoski, Johannes Grillari, Pidder Jansen‐Dürr
Software Mentions: 1
Published: over 13 years ago

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Papers Mentioning limma 7,776