bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-15023-2

Altered B-lymphopoiesis in mice with deregulated thrombopoietin signaling
Cited by: 3
Author(s): Amanda E. Au, Marion Lebois, Starling A. Sim, Ping Cannon, Jason Corbin, Pradnya Gangatirkar, Craig D. Hyland, Diane Moujalled, Angelika Rutgersson, Fatme Yassinson, Benjamin T. Kile, Kylie D. Mason, Ashley P. Ng, Warren S. Alexander, Emma C. Josefsson
Software Mentions: 1
Published: about 7 years ago

10.1186/1756-0500-6-428

Parallel deep transcriptome and proteome analysis of zebrafish larvae
Cited by: 15
Author(s): Magnus Palmblad, Christiaan V. Henkel, Ron P. Dirks, Annemarie H. Meijer, André M. Deelder, Herman P. Spaink
Software Mentions: 1
Published: about 11 years ago

10.1186/1756-0500-7-871

miRNome of inflammatory breast cancer
Cited by: 35
Author(s): D. V. Maltseva, Vladimir Galatenko, Timur R. Samatov, Svetlana Zhikrivetskaya, N. A. Khaustova, И. Н. Нечаев, M. Yu. Shkurnikov, A. V. Lebedev, Irina Mityakina, А. Д. Каприн, Udo Schumacher, Alexander G. Tonevitsky
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-017-15348-y

Serotonin drives the acquisition of a profibrotic and anti-inflammatory gene profile through the 5-HT7R-PKA signaling axis
Cited by: 38
Author(s): Ángeles Domínguez-Soto, Alicia Usategui, Mateo de las Casas-Engel, Miriam Simón-Fuentes, Concha Nieto, Víctor D. Cuevas, Miguel A. Vega, José L. Pablos, Ángel L. Corbí
Software Mentions: 1
Published: about 7 years ago

10.18632/aging.203381

Hsa-circ-0007292 promotes the osteogenic differentiation of posterior longitudinal ligament cells via regulating SATB2 by sponging miR-508-3p
Cited by: 5
Author(s): Aiting Jiang, Nanxiang Wang, Xinxing Yan, Yunheng Jiang, Chengyi Song, Hui Chi, Guanghua Chen, Feng Wu, Yiqin Ji, Jinglong Yan
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-16005-0

Comprehensive functional enrichment analysis of male infertility
Cited by: 23
Author(s): Seyyed Mohammad Razavi, Marjan Sabbaghian, Mahdi Jalili, Adeleh Divsalar, Olaf Wolkenhauer, Ali Salehzadeh‐Yazdi
Software Mentions: 1
Published: about 7 years ago

10.18632/aging.102751

Integrated analysis of DNA methylation and mRNA expression profiles to identify key genes involved in the regrowth of clinically non-functioning pituitary adenoma
Cited by: 10
Author(s): Sen Cheng, Chuzhong Li, Weiyan Xie, Yun‐gen Miao, Jing Guo, Jichao Wang, Yazhou Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13104-015-1567-0

Derivation of induced pluripotent stem cells from orangutan skin fibroblasts
Cited by: 22
Author(s): Krishna Ramaswamy, Wing Yan Yik, Xiaoming Wang, Erin N. Oliphant, Wange Lu, Darryl Shibata, Oliver A. Ryder, Joseph G. Hacia
Software Mentions: 1
Published: about 9 years ago

10.1186/1756-0500-5-40

Factors affecting the yield of microRNAs from laser microdissectates of formalin-fixed tissue sections
Cited by: 6
Author(s): Santosh K. Patnaik, Eric Kannisto, Sai Yendamuri
Software Mentions: 1
Published: almost 13 years ago

10.1038/s41598-017-17776-2

Purification of replicating pancreatic β-cells for gene expression studies
Cited by: 3
Author(s): Reyes Carballar, Maria de Lluc Canyelles, Claudia Fernández, Yasmina Martí, Sarah Bonnin, Esther Castaño, Eduard Montanya, Noèlia Téllez
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17840-x

Plant-derived compounds strigolactone GR24 and pinosylvin activate SIRT1 and enhance glucose uptake in rat skeletal muscle cells
Cited by: 18
Author(s): Shalem Modi, Nagendra Yaluri, Tarja Kokkola, Markku Laakso
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-18034-1

Effects of maternal obesity on Wharton’s Jelly mesenchymal stromal cells
Cited by: 8
Author(s): Heba Badraiq, Aleksandra Čvoro, Antonio Galleu, Marisa Simon, Cristian Miere, Carl Hobbs, Reiner Schulz, RC Siow, Francesco Dazzi, Duško Ilić
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-18041-2

Detection of Cystic Fibrosis Serological Biomarkers Using a T7 Phage Display Library
Cited by: 6
Author(s): H. S. Talwar, Samer Najeeb Hanoudi, Andreea Geamanu, Dana G. Kissner, Sorin Drăghici, Lobelia Samavati
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17545-1

Comprehensive Expression Analysis of microRNAs and mRNAs in Synovial Tissue from a Mouse Model of Early Post-Traumatic Osteoarthritis
Cited by: 23
Author(s): Louise H. W. Kung, Varshini Ravi, Lynn Rowley, Katrina M. Bell, Christopher B. Little, John F. Bateman
Software Mentions: 1
Published: almost 7 years ago

10.18632/aging.101355

Exosomal microRNAs derived from colorectal cancer-associated fibroblasts: role in driving cancer progression
Cited by: 105
Author(s): Rahul Bhome, Rebecca W. Goh, Marc D. Bullock, Nir Pillar, Stephen M. Thirdborough, Massimiliano Mellone, Reza Mirnezami, Dieter Galea, Kirill Veselkov, Quan Gu, Tim Underwood, John Primrose, Olivier De Wever, Noam Shomron, Emre Sayan, Alex H. Mirnezami
Software Mentions: 1
Published: almost 7 years ago

10.18632/aging.202553

Identification of a ten-long noncoding RNA signature for predicting the survival and immune status of patients with bladder urothelial carcinoma based on the GEO database: a superior machine learning model
Cited by: 2
Author(s): Xudong Mao, ShiHan Chen, Gong-hui Li
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-017-18519-z

Comparative Analysis of Gene Expression Profiles of Human Dental Fluorosis and Kashin-Beck Disease
Cited by: 6
Author(s): Zhang Qiang, Jing Ma, Haiqing Liu, Duolong He, Lilin Chen, Honglu Wu, Hong Jiang, Qing Lü, Shenglu Bai
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13104-021-05635-3

Integrated microRNA and mRNA gene expression in peripheral blood mononuclear cells in response to acute psychosocial stress: a repeated-measures within-subject pilot study
Cited by: 1
Author(s): Magdalena Jurkiewicz, Anett Mueller-Alcazar, Dirk Moser, Indralatha Jayatilaka, Anatoly Mikhailik, Jamie Ferri, Nia Fogelman, Turhan Canli
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.102917

The prognostic value of tumor mutational burden and immune cell infiltration in esophageal cancer patients with or without radiotherapy
Cited by: 15
Author(s): Cheng Yuan, Liyang Xiang, Kuo Cao, Jianguo Zhang, Yuan Luo, Wenjie Sun, Nannan Zhang, Jiangbo Ren, Mengjie Zhang, Yan Gong, Conghua Xie
Software Mentions: 1
Published: over 4 years ago

10.1186/s12890-017-0472-9

Unsupervised gene expression analyses identify IPF-severity correlated signatures, associated genes and biomarkers
Cited by: 24
Author(s): Yunguan Wang, Jaswanth Yella, Jing Chen, Francis X. McCormack, Satish K. Madala, Anil G. Jegga
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2466-11-39

The asthma candidate gene NPSR1 mediates isoform specific downstream signalling
Cited by: 22
Author(s): Christina Orsmark-Pietras, Johanna Vendelin, Francesca Anedda, Sara Bruce, Mikael Adner, L. Sundman, Ville Pulkkinen, Harri Alenius, Mauro D’Amato, Cilla Söderhäll, Juha Kere
Software Mentions: 1
Published: over 13 years ago

10.1186/s12890-021-01549-9

GPC3 affects the prognosis of lung adenocarcinoma and lung squamous cell carcinoma
Cited by: 6
Author(s): Jing Ning, Shenyi Jiang, Xiaoxi Li, Yang Wang, Xuhong Deng, Zhiqiang Zhang, Lijie He, Daqing Wang, Youyu Jiang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12884-021-03777-7

Differential circular RNA expression profiles in umbilical cord blood exosomes from preeclampsia patients
Cited by: 7
Author(s): Mingtao Cao, Juan Wen, Chaozhi Bu, Chunyan Li, Yongcheng Lin, Hong Zhang, Yanfang Gu, Zhonghua Shi, Yan Zhang, Wei Long, Le Zhang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-20457-3

Conserved DNA Methylation Signatures in Early Maternal Separation and in Twins Discordant for CO2 Sensitivity
Cited by: 13
Author(s): Francesca Giannese, Alessandra Luchetti, Giulia Barbiera, Valentina Lampis, Claudio Zanettini, Gun Peggy Knudsen, Simona Scaini, Dejan Lazarevic, Davide Cittaro, Francesca R. D’Amato, Marco Battaglia
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-20161-2

ITGB1-dependent upregulation of Caveolin-1 switches TGFβ signalling from tumour-suppressive to oncogenic in prostate cancer
Cited by: 24
Author(s): Teijo Pellinen, Sami Blom, Sara Rubio Sánchez, Katja Välimäki, John-Patrick Mpindi, Hind Azegrouz, Raffaele Strippoli, Raquel Nieto, Mariano Vitón, Irene Palacios, Riku Turkki, Yinhai Wang, Miguel Sánchez-Álvarez, Stig Nordling, Anna Bützow, Tuomas Mirtti, Antti Rannikko, Marı́a C. Montoya, Olli Kallioniemi, Miguel Á. del Pozo
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-20885-1

Laminar Flow Attenuates Macrophage Migration Inhibitory Factor Expression in Endothelial Cells
Cited by: 9
Author(s): Congzhen Qiao, Shengdi Li, Haocheng Lu, Fan Meng, Yanbo Fan, Yanhong Guo, Y. Eugene Chen, Jifeng Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-016-0740-5

Fusarium oxysporum f.sp. radicis-lycopersici induces distinct transcriptome reprogramming in resistant and susceptible isogenic tomato lines
Cited by: 40
Author(s): Daniele Manzo, Francesca Ferriello, Gerardo Puopolo, A. Zoina, Daniela D’Esposito, Luca Tardella, Alberto Ferrarini, Maria Raffaella Ercolano
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-21201-7

Development of a primary human Small Intestine-on-a-Chip using biopsy-derived organoids
Cited by: 479
Author(s): Magdalena Kasendra, Alessio Tovaglieri, Alexandra Sontheimer-Phelps, Hossein Baharvand, Amir Bein, Angeliki Chalkiadaki, William Scholl, Cheng Zhang, Hannah Rickner, Camilla A. Richmond, Hu Li, David T. Breault, Donald E. Ingber
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21684-4

Molecular basis of differential nitrogen use efficiencies and nitrogen source preferences in contrasting Arabidopsis accessions
Cited by: 19
Author(s): Jochen Menz, Tim Range, Johannes Trini, Uwe Ludewig, Benjamin Neuhäuser
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21337-6

CD38 promotes pristane-induced chronic inflammation and increases susceptibility to experimental lupus by an apoptosis-driven and TRPM2-dependent mechanism
Cited by: 24
Author(s): Sonia García‐Rodríguez, Antonio Rosal-Vela, Davide Botta, Luz Milbeth Cumba Garcia, Esther Zumaquero, Verónica Prados-Maniviesa, Daniela Cerezo-Wallis, Nicola Lo Buono, José-Ángel Robles-Guirado, Salvador Guerrero, Elena González-Paredes, Eduardo Andrés-León, Ángel L. Corbí, Matthias Mack, Friedrich Koch-Nolte, Ramón Merino, Mercedes Zubiaur, Frances E. Lund, Jaime Sancho
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-23129-4

Baseline mRNA expression differs widely between common laboratory strains of zebrafish
Cited by: 16
Author(s): Lindsay A. Holden, Kim H. Brown
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-23492-2

Identification of potential key protein interaction networks of BK virus nephropathy in patients receiving kidney transplantation
Cited by: 12
Author(s): Linpei Jia, Wenbin Fu, Rufu Jia, Leiyun Wu, Xiaoxia Li, Qiang Jia, Hong‐Liang Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2229-14-108

Day and night heat stress trigger different transcriptomic responses in green and ripening grapevine (vitis vinifera) fruit
Cited by: 134
Author(s): Markus Rienth, Laurent Torregrosa, Nathalie Luchaire, Ratthaphon Chatbanyong, David Lecourieux, Mary T. Kelly, Charles Romieu
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2229-11-120

Global transcriptome analysis of two ameiotic1 alleles in maize anthers: defining steps in meiotic entry and progression through prophase I
Cited by: 28
Author(s): Guo-Ling Nan, Arnaud Ronceret, Rachel Wang, John Fernandes, W. Zacheus Cande, Virginia Walbot
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12870-020-2317-6

Comparative transcriptome analyses of fruit development among pears, peaches, and strawberries provide new insights into single sigmoid patterns
Cited by: 18
Author(s): Mao-Song Pei, Suhao Cao, Lei Wu, Guo‐Ming Wang, Zhihua Xie, Chao Gu, Shaoling Zhang
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2229-13-27

Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids
Cited by: 48
Author(s): Hyun Jo Koo, Eric T. McDowell, Xiaoqiang Ma, Kevin Greer, Jeremy Kapteyn, Zhengzhi Xie, Anne Descour, Hye Ran Kim, Yeisoo Yu, David Kudrna, Rod A. Wing, Carol Soderlund, David R. Gang
Software Mentions: 1
Published: almost 12 years ago

10.18632/aging.103787

Development of prognostic signature based on immune-related genes in muscle-invasive bladder cancer: bioinformatics analysis of TCGA database
Cited by: 27
Author(s): Kun Jin, Shi Qiu, Di Jin, Xianghong Zhou, Xiaonan Zheng, Jiakun Li, Xinyang Liao, Lu Yang, Qiang Wei
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2229-11-173

SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus
Cited by: 135
Author(s): Steven G. Hussey, Eshchar Mizrachi, Antanas Spokevicius, Gerd Bossinger, David Kenneth Berger, Alexander Andrew Myburg
Software Mentions: 1
Published: almost 13 years ago

10.18632/aging.202659

Construction of a ceRNA-based lncRNA-mRNA network to identify functional lncRNAs in polycystic ovarian syndrome
Cited by: 9
Author(s): Yue Ma, Linna Ma, Yurong Cao, Jing Zhai
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-24282-6

Dynamic transcriptomic analysis of Ischemic Injury in a Porcine Pre-Clinical Model mimicking Donors Deceased after Circulatory Death
Cited by: 14
Author(s): Sébastien Giraud, Clara Steichen, Géraldine Allain, Pierre Couturier, Delphine Labourdette, Sophie Lamarre, Virginie Ameteau, Solenne Tillet, Patrick Hannaert, Raphaël Thuillier, Thierry Hauet
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-24546-1

The observed alteration in BCL2 expression following lithium treatment is influenced by the choice of normalization method
Cited by: 7
Author(s): Odeya Damri, Galila Agam, Lilah Toker
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2229-10-134

Delineating the structural, functional and evolutionary relationships of sucrose phosphate synthase gene family II in wheat and related grasses
Cited by: 13
Author(s): Shailendra Sharma, Nese Sreenivasulu, Vokkaliga T. Harshavardhan, Christiane Seiler, Shiveta Sharma, Zaynali Nezhad Khalil, Eduard Akhunov, Sunish K. Sehgal, Marion S. Röder
Software Mentions: 1
Published: almost 15 years ago

10.18632/aging.101415

Mining TCGA database for genes of prognostic value in glioblastoma microenvironment
Cited by: 234
Author(s): Di Jia, Shenglan Li, Dali Li, Xue Han, Dan Yang, Ying Liu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25512-7

Expressional analysis of disease-relevant signalling-pathways in primary tumours and metastasis of head and neck cancers
Cited by: 16
Author(s): Dorothée Goesswein, Negusse Habtemichael, Aslihan Gerhold‐Ay, Johanna Mazur, Désirée Wünsch, Shirley K. Knauer, Julian Künzel, Christoph Matthias, Sebastian Strieth, Roland H. Stauber
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-020-2258-0

Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators
Cited by: 9
Author(s): Sabine Guillaumie, Stéphane Decroocq, Nathalie Ollat, Serge Delrot, Éric Gomès, Sarah Jane Cookson
Software Mentions: 1
Published: almost 5 years ago

10.18632/aging.202893

microRNA-1246-containing extracellular vesicles from acute myeloid leukemia cells promote the survival of leukemia stem cells via the LRIG1-meditated STAT3 pathway
Cited by: 11
Author(s): Lijuan Chen, Zhi Guo, Yongming Zhou, Jian Ni, Jianhua Zhu, Fan Xu, Xuexing Chen, Yiling Liu, Ziping Li, Hao Zhou
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-26944-x

Mitochondrial function is impaired in the skeletal muscle of pre-frail elderly
Cited by: 66
Author(s): Pénélope Andreux, Marcus P.J. van Diemen, Maxime R. Heezen, Johan Auwerx, Chris Rinsch, Geert Jan Groeneveld, Anurag Singh
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-26865-9

Identifying conserved UV exposure genes and mechanisms
Cited by: 6
Author(s): Susana I. L. Gomes, Carlos P. Roca, Janeck J. Scott-Fordsmand, Mónica J.B. Amorim
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2229-9-4

Linkage mapping of putative regulator genes of barley grain development characterized by expression profiling
Cited by: 11
Author(s): Christof Pietsch, Nese Sreenivasulu, Ulrich Wobus, Marion S. Röder
Software Mentions: 1
Published: almost 16 years ago

10.1186/1472-6793-13-9

Dynamically regulated miRNA-mRNA networks revealed by exercise
Cited by: 99
Author(s): Alexander G. Tonevitsky, D. V. Maltseva, Asghar Abbasi, Timur R. Samatov, D. A. Sakharov, M. Yu. Shkurnikov, A. V. Lebedev, Vladimir Galatenko, Anatoly I. Grigoriev, Hinnak Northoff
Software Mentions: 1
Published: over 11 years ago

10.18632/aging.102874

Comprehensive characterization of endometrial competing endogenous RNA network in infertile women of childbearing age
Cited by: 8
Author(s): Meihua Zhang, Junxia Li, Shuyin Duan, Zhenya Fang, Jiaqi Tian, Haiyan Yin, Qingfeng Zhai, Xietong Wang, Lin Zhang
Software Mentions: 1
Published: over 4 years ago

10.1186/s12903-021-01827-2

Association between chronic periodontitis and the risk of Alzheimer’s disease: combination of text mining and GEO dataset
Cited by: 8
Author(s): Zhengye Jiang, Yanxi Shi, Wenpeng Zhao, Li-Wei Zhou, Bingchang Zhang, Yuanyuan Xie, Yaya Zhang, Guowei Tan, Zhanxiang Wang
Software Mentions: 1
Published: about 3 years ago

10.18632/aging.101088

Expansion induced microRNA changes in bone marrow mesenchymal stromal cells reveals interplay between immune regulation and cell cycle
Cited by: 18
Author(s): Lotta Kilpinen, Amarjit Parmar, Dario Greco, Matti Korhonen, Petri Lehenkari, Päivi Saavalainen, Saara Laitinen
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-27900-5

Comparative Analysis of Mutant Huntingtin Binding Partners in Yeast Species
Cited by: 5
Author(s): Yanding Zhao, Ashley A. Zurawel, Nicole P. Jenkins, Martin L. Duennwald, Chao Cheng, Arminja N. Kettenbach, Surachai Supattapone
Software Mentions: 1
Published: over 6 years ago

10.1186/s12886-020-01381-5

Identification of potential molecular targets associated with proliferative diabetic retinopathy
Cited by: 6
Author(s): Dewang Shao, Shang He, Zi Ye, Xuyou Zhu, Wei Sun, Wei Fu, Tianju Ma, Zhaohui Li
Software Mentions: 1
Published: over 4 years ago

10.1186/s12868-016-0333-0

Poly(ADP-ribose) polymerase inhibitors activate the p53 signaling pathway in neural stem/progenitor cells
Cited by: 17
Author(s): Akiko Okuda, Shu Kurokawa, Masanori Takehashi, Aika Maeda, Katsuya Fukuda, Yukari Kubo, Hyuma Nogusa, Tomoka Takatani‐Nakase, Shujiro Okuda, Kunihiro Ueda, Seigo Tanaka
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-28168-5

Identification of novel ΔNp63α-regulated miRNAs using an optimized small RNA-Seq analysis pipeline
Cited by: 5
Author(s): Suraj Sakaram, Michael P. Craig, Natasha T. Hill, Amjad A. Aljagthmi, Christian M. Garrido, Oleg Paliy, Michael Bottomley, Michael L. Raymer, Madhavi Kadakia
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2202-13-126

High throughput analysis reveals dissociable gene expression profiles in two independent neural systems involved in the regulation of social behavior
Cited by: 22
Author(s): Tyler J. Stevenson, Kirstin Replogle, Jenny Drnevich, David F. Clayton, Gregory F. Ball
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-018-28563-y

Fatty liver is associated with blood pathways of inflammatory response, immune system activation and prothrombotic state in Young Finns Study
Cited by: 10
Author(s): Tuukka Taipale, Ilkka Seppälä, Emma Raitoharju, Nina Mononen, Leo-Pekka Lyytikäinen, Thomas Illig, Mélanie Waldenberger, Markus Juonala, Nina Hutri‐Kähönen, Niku Oksala, Mika Kähönen, Olli T. Raitakari, Terho Lehtimäki
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29107-0

Differentially Methylated Genes in Saliva are linked to Childhood Stress
Cited by: 52
Author(s): Ligia A. Papale, Leslie J. Seltzer, Andy Madrid, Seth D. Pollak, Reid S. Alisch
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29593-2

Mediation analysis reveals common mechanisms of RUNX1 point mutations and RUNX1/RUNX1T1 fusions influencing survival of patients with acute myeloid leukemia
Cited by: 9
Author(s): Roman Hornung, Vindi Jurinović, Aarif M.N. Batcha, Stefanos A. Bamopoulos, Maja Rothenberg‐Thurley, Susanne Amler, Maria Cristina Sauerland, Wolfgang E. Berdel, Bernhard Wörmann, Stefan K. Bohlander, Jan Braess, Wolfgang Hiddemann, Sören Lehmann, Sylvain Mareschal, Karsten Spiekermann, Klaus H. Metzeler, Tobias Herold, Anne‐Laure Boulesteix
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.15662

PIF* promotes brain re-myelination locally while regulating systemic inflammation- clinically relevant multiple sclerosis <i>M.smegmatis</i> model
Cited by: 17
Author(s): Giuseppe Migliara, Martin Mueller, Alessia Piermattei, Chaya Brodie, Michael J. Paidas, Eytan R. Barnea, Francesco Ria
Software Mentions: 1
Published: over 7 years ago

10.1155/2020/4728947

An Autophagy-Related Long Noncoding RNA Signature Contributes to Poor Prognosis in Colorectal Cancer
Cited by: 35
Author(s): Jingsun Wei, Xin Ge, Yang Tang, Yuntao Qian, Wei Lu, Kai Jiang, Yunxia Fang, Maxwell Hwang, Dongliang Fu, Qian Xiao, Kefeng Ding
Software Mentions: 1
Published: about 4 years ago

10.1186/s12883-019-1509-x

Low free triiodothyronineis predicts worsen neurological outcome of patients with acute ischemic stroke: a retrospective study with bioinformatics analysis
Cited by: 12
Author(s): Shanchao Zhang, Xia Zhao, Shan Xu, Jing Yuan, Zhihua Si, Yang Yang, Shan Qiao, Xuxu Xu, Aihua Wang
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.103301

miR-137 prevents inflammatory response, oxidative stress, neuronal injury and cognitive impairment via blockade of Src-mediated MAPK signaling pathway in ischemic stroke
Cited by: 38
Author(s): Runhui Tian, Bo Wu, Cong Fu, Kaimin Guo
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-30313-z

The Overlap of Lung Tissue Transcriptome of Smoke Exposed Mice with Human Smoking and COPD
Cited by: 17
Author(s): Ma’en Obeidat, Anna Dvorkin‐Gheva, Xuan Li, Yohan Bossé, Corry‐Anke Brandsma, David C. Nickle, Philip M. Hansbro, Rosa Faner, Àlvar Agustí, Peter D. Paré, Martin R. Stämpfli, Don D. Sin
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.101184

Longitudinal study of surrogate aging measures during human immunodeficiency virus seroconversion
Cited by: 28
Author(s): Janice M. Leung, Nick Fishbane, Meaghan J. Jones, Alexander M. Morin, Stella Xu, Joseph Cy Liu, Julie L. MacIsaac, M‐J Milloy, Kanna Hayashi, Julio S. G. Montaner, Steve Horvath, Michæl S. Kobor, Don D. Sin, P. Richard Harrigan, SF Paul Man
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12882-021-02356-4

Comprehensive analysis of IgA nephropathy expression profiles: identification of potential biomarkers and therapeutic agents
Cited by: 9
Author(s): Alieh Gholaminejad, Yousof Gheisari, Seyed Amir Jalali, Amir Roointan
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2199-13-9

Novel polysome messages and changes in translational activity appear after induction of adipogenesis in 3T3-L1 cells
Cited by: 16
Author(s): Carolin Fromm‐Dornieden, Silvia von der Heyde, Oleksandr Lytovchenko, Gabriela Salinas-Riester, Bertram Brenig, Tim Beißbarth, Bernhard Baumgartner
Software Mentions: 1
Published: over 12 years ago

10.18632/aging.101319

Towards natural mimetics of metformin and rapamycin
Cited by: 67
Author(s): Alexander Aliper, Leslie C. Jellen, Filomeno Cortese, Artemov Av, Darla Karpinsky-Semper, Alexey Moskalev, Andrew G. Swick, Alex Zhavoronkov
Software Mentions: 1
Published: about 7 years ago

10.18632/aging.202320

Identification of the ceRNA networks in α-MSH-induced melanogenesis of melanocytes
Cited by: 12
Author(s): Ling Jiang, Jinhua Huang, Yibo Hu, Lei Li, Yujie Ouyang, Yan Liu, Hui Li, Si Li, Lun Yang, Yan Yang, Lihua Huang, Hong Xiang, Rong Xiao, Jing Chen, Qinghai Zeng
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-31027-y

A response prediction model for taxane, cisplatin, and 5-fluorouracil chemotherapy in hypopharyngeal carcinoma
Cited by: 12
Author(s): Qi Zhong, Jugao Fang, Zhigang Huang, Yifan Yang, Meng Lian, Honggang Liu, Yixiang Zhang, Junhui Ye, Xinjie Hui, Yejun Wang, Ying Ying, Qing Zhang, Yingduan Cheng
Software Mentions: 1
Published: over 6 years ago

10.1186/s12867-017-0091-2

Microarray expression profiling in the denervated hippocampus identifies long noncoding RNAs functionally involved in neurogenesis
Cited by: 14
Author(s): Bingying Deng, Xiang Cheng, Haoming Li, Jianbing Qin, Mei Tian, Guohua Jin
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-30325-9

Systematic analysis reveals molecular characteristics of ERG-negative prostate cancer
Cited by: 12
Author(s): Qingyu Xiao, Yidi Sun, Albert Dobi, Shiv Srivastava, Ke Wang, Sudhir Srivastava, Yuan Ji, Jun Hou, Guoping Zhao, Yixue Li, Hong Li
Software Mentions: 1
Published: about 6 years ago

10.1186/s12866-017-1137-9

6S RNA plays a role in recovery from nitrogen depletion in Synechocystis sp. PCC 6803
Cited by: 32
Author(s): Beate Heilmann, Kaisa Hakkila, Jens Georg, Taina Tyystjärvi, Wolfgang R. Hess, Ilka M. Axmann, Dennis Dienst
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-32008-x

Hypercapnia Alters Expression of Immune Response, Nucleosome Assembly and Lipid Metabolism Genes in Differentiated Human Bronchial Epithelial Cells
Cited by: 28
Author(s): S. Marina Casalino‐Matsuda, Naizhen Wang, Peder Thusgaard Ruhoff, Hiroaki Matsuda, Marie Nlend, Aisha Nair, Igal Szleifer, Greg J. Beitel, Jacob I. Sznajder, Peter H. S. Sporn
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-31999-x

Sex-specific patterns of gene expression following influenza vaccination
Cited by: 11
Author(s): Feng Wen, Jianming Guo, Zhili Li, Shujian Huang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-31767-x

Exploratory analysis of the human breast DNA methylation profile upon soymilk exposure
Cited by: 3
Author(s): Louis Coussement, Selin Bolca, Wim Van Criekinge, Geert Trooskens, Klaas Mensaert, Katrien Poels, Nathalie Roche, Phillip Blondeel, Lode Godderis, Herman Depypere, Tim De Meyer
Software Mentions: 1
Published: about 6 years ago

10.1186/s12866-020-02059-0

The identification of co-expressed gene modules in Streptococcus pneumonia from colonization to infection to predict novel potential virulence genes
Cited by: 0
Author(s): Sadegh Azimzadeh Jamalkandi, Morteza Kouhsar, Jafar Salimian, Ali Ahmadi
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12866-019-1684-3

Temporal analysis of mRNA expression profiles in Orientia infected C3HeB/FeJ mouse
Cited by: 3
Author(s): Chien‐Chung Chao, Ruoting Yang, Zhiwen Zhang, Tatyana Belinskaya, Chye-Teik Chan, Stacy‐Ann Miller, Rasha Hammamieh, Marti Jett, Wei‐Mei Ching
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2180-12-9

Interleukin-8 is the single most up-regulated gene in whole genome profiling of H. pylori exposed gastric epithelial cells
Cited by: 67
Author(s): Lars Lohne Eftang, Ying Esbensen, Tone Tannæs, Ida Rashida Khan Bukholm, Geir Bukholm
Software Mentions: 1
Published: almost 13 years ago

10.1186/1755-8794-4-67

Gene expression during normal and FSHD myogenesis
Cited by: 81
Author(s): Koji Tsumagari, Shao-Chi Chang, Michelle Lacey, Carl Baribault, Sridar V. Chittur, Janet E. Sowden, Rabi Tawil, Gregory E. Crawford, Melanie Ehrlich
Software Mentions: 1
Published: about 13 years ago

10.1186/s12920-020-0690-5

Amniotic fluid cell-free transcriptome: a glimpse into fetal development and placental cellular dynamics during normal pregnancy
Cited by: 24
Author(s): Adi L. Tarca, Roberto Romero, Roger Piqué-Regi, Percy Pacora, Bogdan Done, Marian Kacerovský, Gaurav Bhatti, Sunil Jaiman, Sonia S. Hassan, Chaur‐Dong Hsu, Nardhy Gómez-López
Software Mentions: 1
Published: almost 5 years ago

10.1155/2021/5193913

Identification of Differentially Expressed Circular RNAs as miRNA Sponges in Lung Adenocarcinoma
Cited by: 4
Author(s): Yuechao Liu, Xin Wang, Lulu Bi, Hongbo Huo, Yan Shi, Yimeng Cui, Yaowen Cui, Ruixue Gu, Dexin Jia, Shuai Zhang, Li Cai, Xiaomei Li, Ying Xing
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-018-32173-z

Integration of Molecular Interactome and Targeted Interaction Analysis to Identify a COPD Disease Network Module
Cited by: 33
Author(s): Amitabh Sharma, Maksim Kitsak, Michael H. Cho, Asher Ameli, Xiaobo Zhou, Zhiqiang Jiang, James D. Crapo, Terri H. Beaty, Jörg Menche, Per Bakke, Marc Santolini, Edwin K. Silverman
Software Mentions: 1
Published: about 6 years ago

10.1186/1755-8794-7-35

A systems biology approach to understand the pathophysiological mechanisms of cardiac pathological hypertrophy associated with rosiglitazone
Cited by: 18
Author(s): Lars Verschuren, Peter Y. Wielinga, Thomas Kelder, Marijana Radonjić, Kanita Salic, Robert Kleemann, Ben van Ommen, Teake Kooistra
Software Mentions: 1
Published: over 10 years ago

10.1186/s12920-019-0566-8

Discovery of stroke-related blood biomarkers from gene expression network models
Cited by: 13
Author(s): Konstantinos Theofilatos, Aigli Korfiati, Seferina Mavroudi, Matthew C. Cowperthwaite, Max Shpak
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/6610511

Osthole Inhibits Breast Cancer Progression through Upregulating Tumor Suppressor GNG7
Cited by: 11
Author(s): Jie Mei, Zhihui Wang, Shaojie Zhao, Yan Zhang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12920-020-00799-6

Comprehensive analysis of angiogenesis-related genes and pathways in early diabetic retinopathy
Cited by: 18
Author(s): Chufeng Gu, Thashi Lhamo, Chen Zou, Chuandi Zhou, Tong Su, Deji Draga, Da Luo, Zhi Zheng, Li Yin, Qinghua Qiu
Software Mentions: 1
Published: about 4 years ago

10.1186/s12920-020-0657-6

DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation
Cited by: 64
Author(s): Ieva Rauluševičiūtė, Finn Drabløs, Morten Rye
Software Mentions: 1
Published: almost 5 years ago

10.18632/oncotarget.6379

Different prognostic impact of<i>STK11</i>mutations in non-squamous non-small-cell lung cancer
Cited by: 59
Author(s): Nicolas Pécuchet, Pierre Laurent‐Puig, Audrey Lupo, Antoine Legras, Marco Alifano, Karine Pallier, Audrey Didelot, Laure Gibault, Claire Danel, Pierre‐Alexandre Just, Marc Riquet, Françoise Le Pimpec-Barthes, Diane Damotte, Elizabeth Fabre, Hélène Blons
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12920-021-01087-7

Integrated bioinformatics analysis of core regulatory elements involved in keloid formation
Cited by: 4
Author(s): Chuying Li, Mei-Tong Jin, Yinli Luo, Zhehu Jin, Long-Quan Pi
Software Mentions: 1
Published: about 3 years ago

10.1186/s12920-015-0103-3

Integrated genomics has identified a new AT/RT-like yet INI1-positive brain tumor subtype among primary pediatric embryonal tumors
Cited by: 14
Author(s): Donald Ming Tak Ho, Chuan Chi Shih, Muh Lii Liang, Chan Yen Tsai, Tsung Han Hsieh, Chin Han Tsai, Shih Chieh Lin, Ting Chang, Meng En Chao, Hsei Wei Wang, Tai-Tong Wong
Software Mentions: 1
Published: over 9 years ago

10.1186/1755-8794-6-41

Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker
Cited by: 49
Author(s): Intawat Nookaew, Kaisa Thorell, Kuntal Worah, Shugui Wang, Martin L. Hibberd, Henrik Sjövall, Sven Pettersson, Jens Nielsen, Samuel Lundin
Software Mentions: 1
Published: about 11 years ago

10.1186/1755-8794-7-13

Childhood abuse is associated with methylation of multiple loci in adult DNA
Cited by: 147
Author(s): Matthew Suderman, Nada Borghol, Jane J. Pappas, Snehal M Pinto Pereira, Marcus Pembrey, Clyde Hertzman, Chris Power, Moshe Szyf
Software Mentions: 1
Published: over 10 years ago

10.1186/1755-8794-6-42

Gene profiling suggests a common evolution of bladder cancer subtypes
Cited by: 8
Author(s): Donna E. Hansel, Zhongfa Zhang, David Petillo, Bin Tean Teh
Software Mentions: 1
Published: about 11 years ago

10.1186/s12920-020-00744-7

Long non-coding RNA profiling of pediatric Medulloblastoma
Cited by: 14
Author(s): Varun Kesherwani, Mamta Shukla, Donald W. Coulter, John Sharp, Shantaram S. Joshi, Nagendra K. Chaturvedi
Software Mentions: 1
Published: over 4 years ago

10.1186/s12920-021-00918-x

Integrated analysis of lncRNA–miRNA–mRNA ceRNA network and the potential prognosis indicators in sarcomas
Cited by: 15
Author(s): Lu Gao, Yu Zhao, Xuelei Ma, Ling Zhang
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.103460

Comprehensive characterization of the tumor microenvironment for assessing immunotherapy outcome in patients with head and neck squamous cell carcinoma
Cited by: 6
Author(s): Jian Zhang, Xi Zhong, Huali Jiang, Hualong Jiang, Tao Xie, Yunhong Tian, Rong Li, Baiyao Wang, Jiexia Zhang, Yawei Yuan
Software Mentions: 1
Published: about 4 years ago

10.1186/s12920-020-00795-w

Identification of key genes and functions of circulating tumor cells in multiple cancers through bioinformatic analysis
Cited by: 8
Author(s): Yawen Guan, Fangshi Xu, Yiyuan Wang, Jie Tian, Ziyan Wan, Zhenlong Wang, Tie Chong
Software Mentions: 1
Published: about 4 years ago

Projects: bioconductor: limma

Papers Mentioning limma 7,776