Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: limma

https://packages.ecosyste.ms/registries/bioconductor.org/packages/limma

Linear Models for Microarray Data
3 versions
Latest release: about 1 year ago
314 dependent packages
4,663,292 downloads total

Papers Mentioning limma 7,776

10.1155/2014/962343
A Study on the Effect of Neurogenesis and Regulation of GSK3<i>β</i>/PP2A Expression in Acupuncture Treatment of Neural Functional Damage Caused by Focal Ischemia in MCAO Rats
Cited by: 16
Author(s): Dan Luo, Xiao-Nong Fan, Congcong Ma, Tongtao Fan, Xiaoguang Wang, Nvzi Chang, Lingxin Li, Yanan Zhang, Zhi-Hong Meng, Shu Wang, Xuemin Shi
Software Mentions: 1
Published: almost 11 years ago
10.1155/2015/917345
Gene Expression Profiling and Pathway Network Analysis Predicts a Novel Antitumor Function for a Botanical-Derived Drug, PG2
Cited by: 16
Author(s): Yi Chun Kuo, Chun-Houh Chen, Tsung Hsien Chuang, Wei Hua, Wey Jinq Lin, Wei-Hsiang Hsu, Peter Mu Hsin Chang, Shih-Kuang Hsu, Tse-Hung Huang, Cheng Yen Kao, Chi Ying F. Huang
Software Mentions: 1
Published: almost 10 years ago
10.1155/2014/942196
Electroacupuncture Improves Trinitrobenzene Sulfonic Acid-Induced Colitis, Evaluated by Transcriptomic Study
Cited by: 11
Author(s): Tin-Yun Ho, Hsin-Yi Lo, De-Cheng Chao, Chia-Cheng Li, Jau-Jin Liu, Chi‐Tsai Lin, Chien-Yun Hsiang
Software Mentions: 1
Published: almost 11 years ago
10.1155/2021/3905367
Investigating the Mechanism of Scutellariae barbata Herba in the Treatment of Colorectal Cancer by Network Pharmacology and Molecular Docking
Cited by: 5
Author(s): Xiangjun Qi, Hongbin Xu, Peng Zhang, Guo-Ming Chen, Zhiqiang Chen, Caishan Fang, Lizhu Lin
Software Mentions: 1
Published: over 3 years ago
10.1155/2017/8753815
The Significant Pathways and Genes Underlying the Colon Cancer Treatment by the Traditional Chinese Medicine PHY906
Cited by: 8
Author(s): Ziyuan Su, Chunyuan Zhou, Shaoyou Qin, Erna Jia, Zhaofei Wu
Software Mentions: 1
Published: almost 8 years ago
10.1111/j.1460-9568.2011.07896.x
Differential gene expression in migratory streams of cortical interneurons
Cited by: 42
Author(s): Mary Antypa, Clare Faux, Gregor Eichele, John G. Parnavelas, William D. Andrews
Software Mentions: 1
Published: about 13 years ago
10.1186/s40001-014-0057-5
Construction of microRNA and transcription factor regulatory network based on gene expression data in cardiomyopathy
Cited by: 3
Author(s): Lei Wang, Jihua Hu, Haijian Xing, Mengjia Sun, Juanli Wang, Qiang Jin, Hua Yang
Software Mentions: 1
Published: about 10 years ago
10.1002/eji.201948151
Deoxyguanosine is a TLR7 agonist
Cited by: 17
Author(s): Tamara Davenne, Anne Bridgeman, Rachel E. Rigby, Jan Rehwinkel
Software Mentions: 1
Published: about 5 years ago
10.1002/eji.201545789
Depletion of CD11c + cells in the CD11c.DTR model drives expansion of unique CD64 + Ly6C + monocytes that are poised to release TNF‐α
Cited by: 10
Author(s): S Sivakumaran, Stephen Henderson, Sophie Ward, Pedro M. Sousa, Teresa Manzo, Lei Zhang, Thomas Conlan, Terry K. Means, Maud d’Aveni, Olivier Hermine, Marie‐Thérèse Rubio, Ronjon Chakraverty, Clare Bennett
Software Mentions: 1
Published: almost 9 years ago
10.1128/EC.00335-13
High-Throughput Chemical Screening for Antivirulence Developmental Phenotypes in Trypanosoma brucei
Cited by: 9
Author(s): Paula MacGregor, Alasdair Ivens, Steven Shave, Iain T. Collie, David W. Gray, Manfred Auer, Keith R. Matthews
Software Mentions: 1
Published: over 10 years ago
10.1186/s13072-019-0283-8
Aberrant methylation-mediated downregulation of lncRNA SSTR5-AS1 promotes progression and metastasis of laryngeal squamous cell carcinoma
Cited by: 30
Author(s): Baoshan Wang, Lei Zhao, Weiwei Chi, Huấn Cao, Weina Cui, Wenxia Meng
Software Mentions: 1
Published: over 5 years ago
10.1080/15592294.2017.1367475
Variability of genome-wide DNA methylation and mRNA expression profiles in reproductive and endocrine disease related tissues
Cited by: 32
Author(s): Nilüfer Rahmioğlu, Alexander W. Drong, Helen Lockstone, Thomas T. Tapmeier, Karin Hellner, Merli Saare, Triin Laisk-Podar, Christine Dew, Emily Tough, George Nicholson, Maire Peters, Andrew P. Morris, Cecilia M. Lindgren, Christian M. Becker, Krina T. Zondervan
Software Mentions: 1
Published: about 7 years ago
10.1080/15592294.2020.1788325
Epigenome-wide cross-tissue correlation of human bone and blood DNA methylation – can blood be used as a surrogate for bone?
Cited by: 17
Author(s): Parvaneh Ebrahimi, Holger Luthman, Fiona McGuigan, Kristina Åkesson
Software Mentions: 1
Published: over 4 years ago
10.1007/s11356-019-05350-4
Correlation between pri-miR-124 (rs531564) polymorphism and congenital heart disease susceptibility in Chinese population at two different altitudes: a case-control and in silico study
Cited by: 10
Author(s): Wenke Yang, Kang Yi, Hongmiao Yu, Yunhan Ding, Dehong Li, Wei Ye, Tao You, Xiaodong Xie
Software Mentions: 1
Published: over 5 years ago
10.1289/ehp.11647
One-Month Diesel Exhaust Inhalation Produces Hypertensive Gene Expression Pattern in Healthy Rats
Cited by: 54
Author(s): Reddy R. Gottipolu, J. Grace Wallenborn, Edward D. Karoly, Mette C. Schladweiler, Allen D. Ledbetter, Todd Krantz, William P. Linak, Abraham Nyska, Johnny A. Johnson, Ronald F. Thomas, Judy E. Richards, Richard H. Jaskot, Urmila P. Kodavanti
Software Mentions: 1
Published: almost 16 years ago
10.1289/ehp.9556
Up-regulation of Tissue Factor in Human Pulmonary Artery Endothelial Cells after Ultrafine Particle Exposure
Cited by: 59
Author(s): Edward D. Karoly, Zhuowei Li, Lisa A. Dailey, Xhevahire Hyseni, Yuh‐Chin T. Huang
Software Mentions: 1
Published: over 17 years ago
10.1289/ehp.8419
Proteomic Evaluation of Neonatal Exposure to 2,2′,4,4′,5-Pentabromodiphenyl Ether
Cited by: 68
Author(s): Henrik Alm, Birger Scholz, Celia Fischer, Kim Kultima, Henrik Viberg, Per Eriksson, Lennart Dencker, Michael Stigson
Software Mentions: 1
Published: almost 19 years ago
10.1186/s12940-016-0202-4
Long-term outdoor air pollution and DNA methylation in circulating monocytes: results from the Multi-Ethnic Study of Atherosclerosis (MESA)
Cited by: 57
Author(s): C. Gloria, Yongmei Liu, James W. MacDonald, R. Graham Barr, Kathleen Donohue, Mark Hensley, Lifang Hou, Charles E. McCall, Lindsay M. Reynolds, David S. Siscovick, Joel D. Kaufman
Software Mentions: 1
Published: almost 8 years ago
10.1186/1476-069X-10-5
In utero exposure to butyl benzyl phthalate induces modifications in the morphology and the gene expression profile of the mammary gland: an experimental study in rats
Cited by: 49
Author(s): Raquel Moral, Julia Santucci-Pereira, Thomas J. Wang, Irma H. Russo, Coral A. Lamartiniere, José Russo
Software Mentions: 1
Published: almost 14 years ago
10.1210/en.2014-1302
Repair-Related Activation of Hedgehog Signaling in Stromal Cells Promotes Intrahepatic Hypothyroidism
Cited by: 43
Author(s): Brittany N. Bohinc, Gregory A. Michelotti, Guanhua Xie, Herbert Pang, Ayako Suzuki, Cynthia D. Guy, Dawn Piercy, Leandi Krüger, Marzena Swiderska‐Syn, Mariana Verdelho Machado, Thiago A. Pereira, Ann Marie Zavacki, Manal F. Abdelmalek, Anna Mae Diehl
Software Mentions: 1
Published: about 10 years ago
10.1530/ERC-13-0222
IL6 sensitizes prostate cancer to the antiproliferative effect of IFNα2 through IRF9
Cited by: 25
Author(s): Holger H.H. Erb, Regina V Langlechner, Patrizia Moser, Florian Handle, Tineke Casneuf, Karin Verstraeten, Bettina Schlick, Georg Schäfer, Brett M. Hall, Kate Sasser, Zoran Čulig, Frédéric R. Santer
Software Mentions: 1
Published: over 11 years ago
10.1155/2020/3981931
Screening and Functional Analysis of Hub MicroRNAs Related to Tumor Development in Colon Cancer
Cited by: 2
Author(s): Donghu Yu, Wei Li, Jingyu Huang, Xiaoping Li, Chi Zhang, Xiaolan Ruan, Sheng Li
Software Mentions: 1
Published: almost 5 years ago
10.1002/ece3.1933
The transcriptomic basis of tissue‐ and nutrition‐dependent sexual dimorphism in the beetle <i>Onthophagus taurus</i>
Cited by: 17
Author(s): Cristina C. Ledón‐Rettig, Armin P. Moczek
Software Mentions: 1
Published: almost 9 years ago
10.1002/ece3.1565
Scaling nitrogen and carbon interactions: what are the consequences of biological buffering?
Cited by: 4
Author(s): David J. Weston, Alistair Rogers, Timothy J. Tschaplinski, Lee E. Gunter, Sara Jawdy, Nancy L. Engle, Lindsey E. Heady, Gerald A. Tuskan, Stan D. Wullschleger
Software Mentions: 1
Published: over 9 years ago
10.17179/excli2019-1893
Common transcriptional programs and the role of chemokine (C-C motif) ligand 20 (CCL20) in cell migration of cholangiocarcinoma.
Cited by: 3
Author(s): Hay Mar Win Maung, Waraporn Chan-On, Nawapol Kunkeaw, Prasong Khaenam
Software Mentions: 1
Published: almost 5 years ago
10.15252/emmm.201707814
Mutant <i> <scp>CTNNB</scp> 1 </i> and histological heterogeneity define metabolic subtypes of hepatoblastoma
Cited by: 35
Author(s): Stefania Crippa, Pierre‐Benoit Ancey, Jessica Vázquez, Paolo Angelino, Anne‐Laure Rougemont, Catherine Guettier, Vincent Zoete, Mauro Delorenzi, Olivier Michielin, Etienne Meylan
Software Mentions: 1
Published: about 7 years ago
10.15252/emmm.202012724
A novel P2X2‐dependent purinergic mechanism of enteric gliosis in intestinal inflammation
Cited by: 27
Author(s): Reiner Schneider, Patrick Leven, Tim R. Glowka, Ivan Kuzmanov, Mariola Lysson, Bianca Schneiker, Anna Miesen, Younis Baqi, Claudia Spanier, Iveta Grants, Elvio Mazzotta, Egina C. Villalobos-Hernández, Jörg C. Kalff, Christa E. Müller, Fedias L. Christofi, Sven Wehner
Software Mentions: 1
Published: almost 4 years ago
10.1002/emmm.201303581
HES6 drives a critical <scp>AR</scp> transcriptional programme to induce castration‐resistant prostate cancer through activation of an <scp>E</scp>2<scp>F</scp>1‐mediated cell cycle network
Cited by: 63
Author(s): Antonio Ramos-Montoya, Alastair Lamb, Roslin Russell, Thomas Carroll, Sarah Jurmeister, Núria Galeano-Dalmau, Charles E. Massie, Joan Boren, Hélène Bon, Vassiliki Théodorou, Maria Vias, Greg L. Shaw, Naomi L. Sharma, Helen Ross-Adams, Helen E. Scott, Sarah L. Vowler, William J. Howat, Anne Y. Warren, Richard Wooster, Ian G. Mills, David E. Neal
Software Mentions: 1
Published: over 10 years ago
10.15252/emmm.201809960
Non‐canonical <scp>cM</scp> et regulation by vimentin mediates Plk1 inhibitor–induced apoptosis
Cited by: 16
Author(s): Ratnakar Singh, Shaohua Peng, Pavitra Viswanath, Vaishnavi Sambandam, Ли Шен, Xiayu Rao, Bingliang Fang, Jing Wang, Faye M. Johnson
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms21030909
Combined Proteomics and Metabolism Analysis Unravels Prominent Roles of Antioxidant System in the Prevention of Alfalfa (Medicago sativa L.) against Salt Stress
Cited by: 31
Author(s): Jikai Li, Jemâa Essemine, Chaoqun Shang, Hailing Zhang, Xiaocen Zhu, Jialin Yu, Genyun Chen, Mingnan Qu, Dequan Sun
Software Mentions: 1
Published: almost 5 years ago
10.1002/emmm.201303123
Inhibition of phosphodiesterase‐4 promotes oligodendrocyte precursor cell differentiation and enhances <scp>CNS</scp> remyelination
Cited by: 45
Author(s): Yasir Ahmed Syed, Alexandra Baer, Matthias P. Hofer, Ginez A. González, Jon Rundle, Szymon Myrta, Jeffrey K. Huang, Chao Zhao, Moritz J. Rossner, Matthew Trotter, Gert Lubec, Robin J.M. Franklin, Mark R. Kotter
Software Mentions: 1
Published: about 11 years ago
10.1093/gbe/evt172
Multi-omics Approaches to Deciphering a Hypervirulent Strain of Campylobacter jejuni
Cited by: 34
Author(s): Zhongliang Wu, Orhan Şahin, Zhangqi Shen, Peng Liu, William G. Miller, Qijing Zhang
Software Mentions: 1
Published: about 11 years ago
10.15252/embj.201386874
Nuclear <scp>ARRB</scp> 1 induces pseudohypoxia and cellular metabolism reprogramming in prostate cancer
Cited by: 54
Author(s): Vincent Zecchini, Basetti Madhu, Roslin Russell, Nelma Pértega‐Gomes, Anne Y. Warren, Edoardo Gaude, Joana Borlido, Rory Stark, Heather Ireland-Zecchini, Roheet Bantval Rao, Helen E. Scott, Joan Boren, Charles E. Massie, Mohammad Asim, Kevin M. Brindle, John R. Griffiths, Christian Frezza, David E. Neal, Ian G. Mills
Software Mentions: 1
Published: over 10 years ago
10.15252/embj.201695476
Esrrb extinction triggers dismantling of naïve pluripotency and marks commitment to differentiation
Cited by: 26
Author(s): Nicola Festuccia, Florian Halbritter, Andrea Corsinotti, Alessia Gagliardi, Douglas Colby, Simon R. Tomlinson, Ian Chambers
Software Mentions: 1
Published: about 6 years ago
10.15252/embj.2020106272
Cellular stress promotes NOD1/2‐dependent inflammation via the endogenous metabolite sphingosine‐1‐phosphate
Cited by: 32
Author(s): Gang Pei, Joanna Żyła, Lichun He, Pedro Moura-Alves, Heidrun Steinle, Philippe Saikali, Laura Lozza, Natalie E. Nieuwenhuizen, January Weiner, Hans-Joachim Mollenkopf, Kornelia Ellwanger, Christine Arnold, Mojie Duan, Yulia A. Dagil, Мikhail Pashenkov, Ivo Gomperts Boneca, Thomas A. Kufer, Anca Dorhoi, Stefan H. E. Kaufmann
Software Mentions: 1
Published: over 3 years ago
10.1186/gm437
Isoform level expression profiles provide better cancer signatures than gene level expression profiles
Cited by: 42
Author(s): Zhongfa Zhang, Sharmistha Pal, Yingtao Bi, Julia Tchou, Ramana V. Davuluri
Software Mentions: 1
Published: almost 12 years ago
10.1016/j.ebiom.2019.03.072
Identification of novel differentially methylated sites with potential as clinical predictors of impaired respiratory function and COPD
Cited by: 19
Author(s): Mairead Lesley Bermingham, Richard M Martin, Riccardo E. Marioni, Stewart W. Morris, Konrad Rawlik, Yanni Zeng, Archie Campbell, Paul Redmond, Heather C. Whalley, Mark Adams, Caroline Hayward, Ian J. Deary, David J. Porteous, Andrew M. McIntosh, Kathryn Evans
Software Mentions: 1
Published: over 5 years ago
10.1016/j.celrep.2018.05.049
Inhibition of Microprocessor Function during the Activation of the Type I Interferon Response
Cited by: 14
Author(s): Jeroen Witteveldt, Alasdair Ivens, Sara Macías
Software Mentions: 1
Published: over 6 years ago
10.1155/2020/1204605
<i>SLC1A1</i>, <i>SLC16A9</i>, and <i>CNTN3</i> Are Potential Biomarkers for the Occurrence of Colorectal Cancer
Cited by: 9
Author(s): Jie Zhou, Zhiman Xie, Ping Cui, Qisi Su, Yu Zhang, Lijia Luo, Zhuoxin Li, Ye Li, Hao Liang, Jiegang Huang
Software Mentions: 1
Published: over 4 years ago
10.1016/j.celrep.2021.109155
Copy number aberrations drive kinase rewiring, leading to genetic vulnerabilities in cancer
Cited by: 9
Author(s): Danish Memon, Michael B. Gill, Evangelia K. Papachristou, David Ochoa, Clive S. D’Santos, Martin L. Miller, Pedro Beltrão
Software Mentions: 1
Published: over 3 years ago
10.1155/2020/5019793
Database Mining of Genes of Prognostic Value for the Prostate Adenocarcinoma Microenvironment Using the Cancer Gene Atlas
Cited by: 15
Author(s): Xin Zhao, Daixing Hu, Jia Li, Guozhi Zhao, Wei Tang, Horng‐Long Cheng
Software Mentions: 1
Published: over 4 years ago
10.1007/s00018-020-03703-8
Shared extracellular vesicle miRNA profiles of matched ductal pancreatic adenocarcinoma organoids and blood plasma samples show the power of organoid technology
Cited by: 14
Author(s): Anikó Zeöld, Gyöngyvér Orsolya Sándor, Anna L. Kiss, András Áron Soós, Tamás Tölgyes, Attila Bursics, Ákos Szücs, László Harsányi, Ágnes Kittel, András Gézsi, Edit I. Buzás, Zoltán Wiener
Software Mentions: 1
Published: almost 4 years ago
10.3390/ijms21041305
Differential Secretion of Angiopoietic Factors and Expression of MicroRNA in Umbilical Cord Blood from Healthy Appropriate-For-Gestational-Age Preterm and Term Newborns—in Search of Biomarkers of Angiogenesis-Related Processes in Preterm Birth
Cited by: 10
Author(s): Dorota Gródecka-Szwajkiewicz, Zofia Ulańczyk, Edyta Zagrodnik, Karolina Łuczkowska, Dorota Rogińska, Miłosz Kawa, Iwona Stecewicz, Krzysztof Safranow, Bogusław Machaliński
Software Mentions: 1
Published: almost 5 years ago
10.1155/2020/9710421
Identification of Potential Biomarkers for Thyroid Cancer Using Bioinformatics Strategy: A Study Based on GEO Datasets
Cited by: 23
Author(s): Yujie Shen, Shikun Dong, Jinhui Liu, Liqing Zhang, Jiacheng Zhang, Han Zhou, Wei Dong
Software Mentions: 1
Published: over 4 years ago
10.1007/s00018-021-03902-x
Chronic exposure to Cytolethal Distending Toxin (CDT) promotes a cGAS-dependent type I interferon response
Cited by: 6
Author(s): Benoît J. Pons, Aurélie Pettes-Duler, Claire Naylies, Frédéric Taïeb, Catherine Bouchenot, Saleha Hashim, Patrick Rouimi, Maxime Deslande, Yannick Lippi, Gladys Mirey, Julien Vignard
Software Mentions: 1
Published: over 3 years ago
10.1007/s00018-013-1336-y
Function of the C. elegans T-box factor TBX-2 depends on SUMOylation
Cited by: 13
Author(s): Paul Huber, Tanya Crum, Lynn M. Clary, Tom Ronan, Adelaide V. Packard, Peter G. Okkema
Software Mentions: 1
Published: over 11 years ago
10.1186/s11658-019-0183-8
Monoamine oxidase-A activity is required for clonal tumorsphere formation by human breast tumor cells
Cited by: 10
Author(s): William D. Gwynne, Mirza S. Shakeel, Jianhan Wu, Robin Hallett, Adele Girgis-Gabardo, Anna Dvorkin‐Gheva, John A. Hassell
Software Mentions: 1
Published: about 5 years ago
10.1016/j.cmet.2018.02.007
Visceral Adipose Tissue Immune Homeostasis Is Regulated by the Crosstalk between Adipocytes and Dendritic Cell Subsets
Cited by: 106
Author(s): Claire Elizabeth Macdougall, Elizabeth G. Wood, Jakob Loschko, Valeria Scagliotti, Féaron C. Cassidy, Mark E. Robinson, Niklas Feldhahn, Leandro Castellano, Mathieu-Benoı̂t Voisin, Federica M. Marelli‐Berg, Carles Gaston‐Massuet, Marika Charalambous, M. Paula Longhi
Software Mentions: 1
Published: over 6 years ago
10.22074/cellj.2018.4991
Bioinformatic Analysis Identifies Three Potentially Key Differentially Expressed Genes in Peripheral Blood Mononuclear Cells of Patients with Takayasu's Arteritis.
Cited by: 0
Author(s): Renping Huang, Yang He, Bei Sun, Bing Liu
Software Mentions: 1
Published: almost 7 years ago
10.1038/cddiscovery.2016.16
Mitochondrial DNA plasticity is an essential inducer of tumorigenesis
Cited by: 26
Author(s): William Lee, Jason E. Cain, Andrew Cuddihy, Jacqueline L. Johnson, Adam Dickinson, K-Y Yeung, Beena Kumar, Terrance G. Johns, D. Neil Watkins, Andrew Spencer, Justin C. St. John
Software Mentions: 1
Published: over 8 years ago
10.1038/s41420-021-00525-w
Hypoxic TAM-derived exosomal miR-155-5p promotes RCC progression through HuR-dependent IGF1R/AKT/PI3K pathway
Cited by: 25
Author(s): Wei Gu, Linjing Gong, Xu Wu, Xudong Yao
Software Mentions: 1
Published: over 3 years ago
10.1038/s41420-018-0036-7
Characterization of dysregulated lncRNA-mRNA network based on ceRNA hypothesis to reveal the occurrence and recurrence of myocardial infarction
Cited by: 39
Author(s): Guangde Zhang, Haoran Sun, Yawei Zhang, Hengqiang Zhao, Wenjing Fan, Jianfei Li, Yingli Lv, Qiong Song, Jiayao Li, Mingyu Zhang, Hang Shi
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41420-021-00625-7
Dipeptidyl peptidase-4 (DPP4) inhibitor sitagliptin alleviates liver inflammation of diabetic mice by acting as a ROS scavenger and inhibiting the NFκB pathway
Cited by: 17
Author(s): Xin Wang, Jing Ke, Yingjun Zhu, Bin Cao, Ruili Yin, Yan Wang, Lingling Wei, Lijie Zhang, Longyan Yang, Dong Zhao
Software Mentions: 1
Published: about 3 years ago
10.1155/2019/1545680
Hub Genes and Key Pathway Identification in Colorectal Cancer Based on Bioinformatic Analysis
Cited by: 16
Author(s): Jian Lv, Lili Li
Software Mentions: 1
Published: about 5 years ago
10.1155/2018/4028473
The Prediction of Drug-Disease Correlation Based on Gene Expression Data
Cited by: 9
Author(s): Hui Song Cui, Menghuan Zhang, Qingmin Yang, Xiangyi Li, Michael Liebman, Ying Yu, Lu Xie
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41420-021-00562-5
Implication of human endogenous retrovirus W family envelope in hepatocellular carcinoma promotes MEK/ERK-mediated metastatic invasiveness and doxorubicin resistance
Cited by: 24
Author(s): Yan Zhou, Lijuan Liu, Youyi Liu, Ping Zhou, Qiujin Yan, Honglian Yu, Xiaobei Chen, Fan Zhu
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-13-305
De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system
Cited by: 34
Author(s): Mark P. Peterson, Danielle J. Whittaker, Shruthi Ambreth, Suhas Sureshchandra, Aaron Buechlein, Ram Podicheti, Jeong-Hyeon Choi, Zhao Lai, Keithanne Mockatis, John K. Colbourne, Haixu Tang, Ellen D. Ketterson
Software Mentions: 1
Published: almost 13 years ago
10.1038/cddiscovery.2017.15
Cell-free chromatin from dying cancer cells integrate into genomes of bystander healthy cells to induce DNA damage and inflammation
Cited by: 38
Author(s): Indraneel Mittra, Urmila Samant, Suvarna Sharma, G. Raghuram, Tannistha Saha, Pritishkumar Tidke, Namrata Pancholi, Deepika Gupta, Preeti Prasannan, Ashwini Gaikwad, Nilesh Gardi, Rohan Chaubal, Pawan Upadhyay, Kavita Pal, Bhagyeshri Rane, Alfina Shaikh, Sameer Salunkhe, Shilpee Dutt, Pradyumna Kumar Mishra, Naveen K. Khare, Naveen Kumar Nair, Amit Dutt
Software Mentions: 1
Published: over 7 years ago
10.3389/fcell.2021.689533
Current Pharmacological Strategies for Duchenne Muscular Dystrophy
Cited by: 25
Author(s): Shanshan Yao, Zihao Chen, Yuanyuan Yu, Ning Zhang, Hewen Jiang, Ge Zhang, Zongkang Zhang, Bao-Ting Zhang
Software Mentions: 1
Published: over 3 years ago
10.1016/j.cjco.2020.11.019
A Comparative Analysis of the Lipoprotein(a) and Low-Density Lipoprotein Proteomic Profiles Combining Mass Spectrometry and Mendelian Randomization
Cited by: 10
Author(s): Raphaëlle Bourgeois, Arnaud Girard, Nicolas Perrot, Jakie Guertin, Patricia L. Mitchell, Christian Couture, Clarisse Gotti, Sylvie Bourassa, Paolo Poggio, Elvira Mass, Romain Capoulade, Corey A. Scipione, Audrey-Anne Després, Patrick Couture, Arnaud Droit, Philippe Pîbarot, Michael B. Boffa, Sébastien Thériault, Marlys L. Koschinsky, Patrick Mathieu, Benoît J. Arsenault
Software Mentions: 1
Published: over 3 years ago
10.1002/jcla.23393
Identification of plasma hsa_circ_0008673 expression as a potential biomarker and tumor regulator of breast cancer
Cited by: 26
Author(s): Youting Hu, Qi Song, Jinmin Zhao, Jian Ruan, Fan He, Xia Yang, Xindi Yu
Software Mentions: 1
Published: over 4 years ago
10.1186/s12920-021-00918-x
Integrated analysis of lncRNA–miRNA–mRNA ceRNA network and the potential prognosis indicators in sarcomas
Cited by: 15
Author(s): Lu Gao, Yu Zhao, Xuelei Ma, Ling Zhang
Software Mentions: 1
Published: over 3 years ago
10.1002/jcla.23584
Microinjection manipulation decreases the expression of GABA‐A receptor signaling pathway genes in mouse embryos derived using intracytoplasmic sperm injection
Cited by: 0
Author(s): Zili Zhang, Ting Wang, Juanhua Huang, Yu‐Yao Huang, Qingxue Zhang
Software Mentions: 1
Published: about 4 years ago
10.1002/jcla.23588
Bioinformatics analysis of differentially expressed miRNAs in non‐small cell lung cancer
Cited by: 14
Author(s): Hui Yu, Zhonghao Pang, Gang Li, Tianyi Gu
Software Mentions: 1
Published: about 4 years ago
10.1002/jcla.23779
A ten N6‐methyladenosine‐related long non‐coding RNAs signature predicts prognosis of triple‐negative breast cancer
Cited by: 19
Author(s): Jie Wu, Yan Cai, Gaiping Zhao, Maolan Li
Software Mentions: 1
Published: over 3 years ago
10.1186/s40659-018-0175-6
Bioinformatics analysis of microarray data to reveal the pathogenesis of diffuse intrinsic pontine glioma
Cited by: 16
Author(s): Wei Li, Fei He, Wen Zhang, Wenhua Chen, Bo Yu
Software Mentions: 1
Published: over 6 years ago
10.1242/dmm.022277
Urine-sample-derived human induced pluripotent stem cells as a model to study PCSK9-mediated autosomal dominant hypercholesterolemia
Cited by: 30
Author(s): Karim Si‐Tayeb, Salam Idriss, Benoite Champon, Amandine Caillaud, Matthieu Pichelin, Lucie Arnaud, Patricia Lemarchand, Cédric Le May, Kazem Zibara, Bertrand Cariou
Software Mentions: 1
Published: almost 10 years ago
10.1186/s13024-018-0259-3
Large-scale transcriptomic analysis reveals that pridopidine reverses aberrant gene expression and activates neuroprotective pathways in the YAC128 HD mouse
Cited by: 25
Author(s): Rebecca Kusko, Jennifer Dreymann, Jeffrey Ross, Yoon Jin, Renan Escalante-Chong, Marta Garcia-Miralles, Liang Juin Tan, Michael E. Burczynski, Ben Zeskind, Daphna Laifenfeld, Mahmoud A. Pouladi, Michal Geva, Iris Grossman, Michael R. Hayden
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.48625
PUMILIO, but not RBMX, binding is required for regulation of genomic stability by noncoding RNA NORAD
Cited by: 50
Author(s): Mahmoud M. Elguindy, Florian Kopp, Mohammad Goodarzi, Frederick Rehfeld, Anu Thomas, Tsung Cheng Chang, Joshua T. Mendell
Software Mentions: 1
Published: over 5 years ago
10.3390/jcm9051276
Gene Expression Patterns Distinguish Mortality Risk in Patients with Postsurgical Shock
Cited by: 7
Author(s): Pedro Martínez-Paz, Marta Aragón-Camino, Esther Gómez-Sánchez, Mario Lorenzo-López, Estefanía Gómez-Pesquera, Rocío López-Herrero, Belén Sánchez-Quirós, Olga de la Varga, Álvaro Tamayo-Velasco, Christian Ortega-Loubón, Emilio García‐Morán, Hugo Gonzalo, María Heredia-Rodríguez, Eduardo Tamayo
Software Mentions: 1
Published: over 4 years ago
10.1242/dmm.029678
Pumilio2 deficient mice show a predisposition for epilepsy
Cited by: 39
Author(s): Philipp Follwaczny, Rico Schieweck, Therese Riedemann, Antonia Demleitner, Tobias Straub, Anna H. Klemm, Martin Bilban, Bernd Sutor, Bastian Popper, Michael Kiebler
Software Mentions: 1
Published: almost 8 years ago
10.1186/s13024-021-00441-8
Preclinical modeling of chronic inhibition of the Parkinson’s disease associated kinase LRRK2 reveals altered function of the endolysosomal system in vivo
Cited by: 25
Author(s): Jillian H. Kluss, Melissa Conti Mazza, Yan Li, Claudia Manzoni, Patrick A. Lewis, Mark Cookson, Adamantios Mamais
Software Mentions: 1
Published: over 3 years ago
10.1242/dmm.027953
Characterization of <i>Drosophila saposin-related</i> mutants as a model for lysosomal sphingolipid storage diseases
Cited by: 11
Author(s): Julia Sellin, Heike Schulze, Marie Paradis, Dominic Gosejacob, Cyrus Papan, Andrej Shevchenko, Olympia Psathaki, Achim Paululat, Melanie Thielisch, Konrad Sandhoff, Michael Hoch
Software Mentions: 1
Published: almost 8 years ago
10.1155/2021/8889569
Differentially Expressed Circular RNA Profile in an Intracranial Aneurysm Group Compared with a Healthy Control Group
Cited by: 8
Author(s): Yonggang Ma, Baoqing Zhang, Dong Zhang, Shuo Wang, Maogui Li, Jizong Zhao
Software Mentions: 1
Published: almost 4 years ago
10.1155/2019/2407067
ELL2 Is Downregulated and Associated with Galactose-Deficient IgA1 in IgA Nephropathy
Cited by: 1
Author(s): Youxia Liu, Jie Zheng, Na Zhao, Junya Jia, Tiekun Yan
Software Mentions: 1
Published: over 5 years ago
10.1155/2018/9369358
Expression of Pentose Phosphate Pathway-Related Proteins in Breast Cancer
Cited by: 30
Author(s): Jong Myung Choi, Eun Sol Kim, Ja Seung Koo
Software Mentions: 1
Published: almost 7 years ago
10.1155/2020/8847635
A Novel Gene Signature to Predict Survival Time and Incident Ventricular Arrhythmias in Patients with Dilated Cardiomyopathy.
Cited by: 1
Author(s): Chenliang Ge, Yan He
Software Mentions: 1
Published: about 4 years ago
10.1155/2021/4129993
Network Pharmacology Reveals That Resveratrol Can Alleviate COVID-19-Related Hyperinflammation
Cited by: 16
Author(s): Zijian Xiao, Qing Ye, Xiaoling Duan, Tao Xiang
Software Mentions: 1
Published: about 3 years ago
10.1186/1750-1326-4-49
Vascular endothelial growth factor B (VEGF-B) is up-regulated and exogenous VEGF-B is neuroprotective in a culture model of Parkinson's disease
Cited by: 56
Author(s): Torsten Falk, Shiling Zhang, Scott J. Sherman
Software Mentions: 1
Published: almost 16 years ago
10.1155/2013/589451
The Effect of Diabetes-Associated Autoantigens on Cell Processes in Human PBMCs and Their Relevance to Autoimmune Diabetes Development
Cited by: 4
Author(s): Jana Včeláková, Radek Blatný, Z. Halbhuber, Michal Kolář, Aleš Neuwirth, Lenka Petruželková, Tereza Ulmannová, Stanislava Koloušková, Zdenĕk Šumnı́k, Pavlína Piťhová, M Krivjanska, Dominik Filipp, Kateřina Štechová
Software Mentions: 1
Published: almost 12 years ago
10.1155/2014/763936
Targets and Candidate Agents for Type 2 Diabetes Treatment with Computational Bioinformatics Approach
Cited by: 10
Author(s): Qiong Wang, Zhigang Zhao, Jing Shang, Wei Xia
Software Mentions: 1
Published: almost 11 years ago
10.1155/2018/7361684
A Transcriptional Sequencing Analysis of Islet Stellate Cell and Pancreatic Stellate Cell
Cited by: 10
Author(s): Xiaohang Wang, Wei Li, Juan Chen, Sheng Zhao, Shanhu Qiu, Han Yin, Vladmir Carvalho, Yunting Zhou, Ruifeng Shi, Jiannan Hu, Shenyi Li, Munire Nijiati, Zilin Sun
Software Mentions: 1
Published: almost 7 years ago
10.1007/s12035-019-1627-x
Circular RNAs as Potential Blood Biomarkers in Amyotrophic Lateral Sclerosis
Cited by: 40
Author(s): Ana Dolinar, Blaž Koritnik, Damjan Glavač, Metka Ravnik‐Glavač
Software Mentions: 1
Published: over 5 years ago
10.1155/2016/3650909
Toward Noninvasive Diagnosis of IgA Nephropathy: A Pilot Urinary Metabolomic and Proteomic Study
Cited by: 19
Author(s): Michaela Neprašová, Dita Maixnerová, Jan Novák, Colin Reily, Bruce A. Julian, Jan Boron, Petr Novotný, Miloslav Suchánek, Vladimı́r Tesař, Petr Kačer
Software Mentions: 1
Published: about 8 years ago
10.1155/2021/7253633
Expression of Four Autophagy-Related Genes Accurately Predicts the Prognosis of Gastrointestinal Cancer in Asian Patients
Cited by: 3
Author(s): Hua Tang, Yan Liang, Shanshan Xu, Rong Xia, Jiacheng Shen, Yuxin Zhang, Xing Gong, Yang Gi Min, Di Zhang, Tai-Yun Zhao, Shoulin Wang, Yi Zhang, Chao Wang
Software Mentions: 1
Published: about 3 years ago
10.1093/jxb/eru145
Heterografting with nonself rootstocks induces genes involved in stress responses at the graft interface when compared with autografted controls
Cited by: 85
Author(s): Sarah Jane Cookson, María José Clemente‐Moreno, Cyril Hévin, Larissa Zita Nyamba Mendome, Serge Delrot, Noël Magnin, Claudine Trossat-Magnin, Nathalie Ollat
Software Mentions: 1
Published: over 10 years ago
10.3390/diagnostics10030177
Predictive Analyses of Prognostic-Related Immune Genes and Immune Infiltrates for Glioblastoma
Cited by: 15
Author(s): Ping Liang, Yi Chai, He Zhao, Guihuai Wang
Software Mentions: 1
Published: over 4 years ago
10.1007/s12035-016-0334-0
Humoral Immunity Profiling of Subjects with Myalgic Encephalomyelitis Using a Random Peptide Microarray Differentiates Cases from Controls with High Specificity and Sensitivity
Cited by: 17
Author(s): Sahajpreet Singh, Phillip Stafford, Karen Schlauch, Richard R. Tillett, Martin Gollery, Stephen Albert Johnston, Svetlana F. Khaiboullina, Kenny L. De Meirleir, Shanti Rawat, Tatjana Mijatovic, Krishnamurthy Subramanian, András Palotás, Vincent Lombardi
Software Mentions: 1
Published: almost 8 years ago
10.7554/eLife.23190
Different TCR-induced T lymphocyte responses are potentiated by stiffness with variable sensitivity
Cited by: 135
Author(s): Michael Saitakis, Stéphanie Dogniaux, Christel Goudot, Nathalie Bufi, Sophie Asnacios, Mathieu Maurin, Clotilde Randriamampita, Atef Asnacios, Claire Hivroz
Software Mentions: 1
Published: over 7 years ago
10.1093/jxb/erw295
Spatial and temporal transcriptome changes occurring during flower opening and senescence of the ephemeral hibiscus flower,<i>Hibiscus rosa-sinensis</i>
Cited by: 30
Author(s): Alice Trivellini, Giacomo Cocetta, Donald A. Hunter, Paolo Vernieri, António Ferrante
Software Mentions: 1
Published: about 8 years ago
10.1007/s12035-020-02189-6
Constitutive PGC-1α Overexpression in Skeletal Muscle Does Not Contribute to Exercise-Induced Neurogenesis
Cited by: 7
Author(s): Lars Karlsson, María Nazareth González-Alvarado, Reza Motalleb, Yafeng Wang, Yong Wang, Mats Börjesson, Changlian Zhu, H. Georg Kuhn
Software Mentions: 1
Published: about 4 years ago
10.1093/jxb/erx104
Complexity and specificity of the maize (Zea mays L.) root hair transcriptome
Cited by: 18
Author(s): Stefan Hey, Jutta A. Baldauf, Nina Opitz, Andrew Lithio, Asher Pasha, Nicholas J. Provart, Dan Nettleton, Frank Hochholdinger
Software Mentions: 1
Published: over 7 years ago
10.1111/j.1365-2958.2012.08192.x
Identification of a complex genetic network underlying <i><scp>S</scp>accharomyces cerevisiae</i> colony morphology
Cited by: 60
Author(s): Karin Voordeckers, Dries De Maeyer, Elisa van der Zande, Marcelo D. Vinces, Wim Meert, Lore Cloots, Owen Ryan, Kathleen Marchal, Kevin J. Verstrepen
Software Mentions: 1
Published: about 12 years ago
10.1111/mmi.13460
Phytohormone sensing in the biotrophic fungus<i>Ustilago maydis</i>– the dual role of the transcription factor Rss1
Cited by: 14
Author(s): Franziska Rabe, Denise Seitner, Lisa Bauer, Fernando Navarrete, Angelika Czedik‐Eysenberg, Fernando A. Rabanal, Armin Djamei
Software Mentions: 1
Published: over 8 years ago
10.1007/s00125-021-05427-1
IGFBP-1 expression is reduced in human type 2 diabetic glomeruli and modulates β1-integrin/FAK signalling in human podocytes
Cited by: 15
Author(s): Abigail C Lay, Lorna J Hale, Holly Stowell-Connolly, Robert J P Pope, Viji Nair, Wenjun Ju, Eva Márquez, Ruth Rollason, Jennifer A. Hurcombe, Bryony Hayes, Timothy Roberts, Lawrence Gillam, Jonathan Allington, Robert G. Nelson, Matthias Kretzler, Jeff M.P. Holly, Claire M Perks, Craig A. McArdle, Gavin I. Welsh, Richard J M Coward
Software Mentions: 1
Published: over 3 years ago
10.1242/dev.168161
Transcriptionally dynamic progenitor populations organised around a stable niche drive axial patterning
Cited by: 43
Author(s): Filip J. Wymeersch, Stavroula Skylaki, Yali Huang, Julia A. Watson, Constantinos Economou, Carylyn Marek-Johnston, Simon R. Tomlinson, Valerie Wilson
Software Mentions: 1
Published: almost 7 years ago
10.3390/ijms12117554
Enhanced Differentiation of Three-Gene-Reprogrammed Induced Pluripotent Stem Cells into Adipocytes via Adenoviral-Mediated PGC-1α Overexpression
Cited by: 9
Author(s): Pin I. Huang, Yueh Ching Chou, Yuh Lih Chang, Yueh Chien, Kuan Hsuan Chen, Wen Song, Chi Hsien Peng, Chueh Chang, Shin-Da Lee, Kai Lü, Yi Jen Chen, Chia‐Hua Kuo, Chuan Chih Hsu, Hsin Chen Lee, Ming Chi Yung
Software Mentions: 1
Published: about 13 years ago
10.1242/dev.136465
RBOH-mediated ROS production facilitates lateral root emergence in Arabidopsis
Cited by: 134
Author(s): Beata Orman-Ligeza, Boris Parizot, Riet De Rycke, Ana Fernandez, Ellie Himschoot, Frank Van Breusegem, Malcolm J. Bennett, Claire Périlleux, Tom Beeckman, Xavier Draye
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13040-018-0174-8
Integrative analysis of gene expression and methylation data for breast cancer cell lines
Cited by: 8
Author(s): Catherine Li, Juyon Lee, Jessica Ding, Shuying Sun
Software Mentions: 1
Published: over 6 years ago
10.1242/dev.100487
A single allele of <i>Hdac2</i> but not <i>Hdac1</i> is sufficient for normal mouse brain development in the absence of its paralog
Cited by: 71
Author(s): Astrid Hagelkrüys, Sabine Lagger, Julia Krahmer, Alexandra Leopoldi, Matthias Artaker, Oliver Pusch, Jürgen Zezula, Simon Weissmann, Yunyun Xie, Christian Schöfer, Michaela Schlederer, Gerald Brosch, Patrick Matthias, Jim Selfridge, Hans Lassmann, Juergen A. Knoblich, Christian Seiser
Software Mentions: 1
Published: almost 11 years ago