bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1186/s12906-016-1349-9

Identification of more objective biomarkers for Blood-Stasis syndrome diagnosis
Cited by: 21
Author(s): Jingqiu Liao, Yongmei Liu, Jie Wang
Software Mentions: 1
Published: almost 10 years ago

Blocking PDGF-CC signaling ameliorates multiple sclerosis-like neuroinflammation by inhibiting disruption of the blood–brain barrier
Cited by: 13
Author(s): Manuel Zeitelhofer, Milena Z. Adzemovic, Christine Moessinger, Christina Stefanitsch, Carina Strell, Lars Muhl, Lou Brundin, Linda Fredriksson, Tomas Olsson, Ulf Eriksson, Ingrid Nilsson
Software Mentions: 1
Published: over 5 years ago

10.1186/s12906-017-1911-0

Comprehensive evaluation of gene expression signatures in response to electroacupuncture stimulation at Zusanli (ST36) acupoint by transcriptomic analysis
Cited by: 2
Author(s): Jing-Shan Wu, Hsin-Yi Lo, Chia-Cheng Li, Fengyuan Chen, Chien-Yun Hsiang, Tin-Yun Ho
Software Mentions: 1
Published: about 9 years ago

10.1186/s12872-021-02011-8

SCD leads to the development and progression of acute myocardial infarction through the AMPK signaling pathway
Cited by: 3
Author(s): Lijie Wang, Feng Yu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12872-020-01701-z

Investigation of the underlying genes and mechanism of familial hypercholesterolemia through bioinformatics analysis
Cited by: 7
Author(s): Dinghui Wang, Bin Liu, Tianhua Xiong, Wenlong Yu, Sheng Qiang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-019-5927-3

Estimation of immune cell content in tumor using single-cell RNA-seq reference data
Cited by: 28
Author(s): Xiaoqing Yu, Yian Ann Chen, José R. Conejo-Garcia, Christine H. Chung, Xuefeng Wang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-79611-5

Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance
Cited by: 8
Author(s): Jan Félix, Claire Siebert, Julia Novion Ducassou, Jérôme Nigou, Pierre Garcia, Angélique Fraudeau, Karine Huard, Caroline Mas, Céline Brochier-Armanet, Yohann Couté, Irina Gutsche, Patricia Renesto
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-018-4852-1

Development of acquired resistance to lapatinib may sensitise HER2-positive breast cancer cells to apoptosis induction by obatoclax and TRAIL
Cited by: 17
Author(s): Alex J. Eustace, Neil T. Conlon, Martina S.J. McDermott, Brigid C. Browne, Patrick C. O’Leary, Frankie A. Holmes, Virginia Espina, Lance A. Liotta, Joyce O’Shaughnessy, Clair Gallagher, Lorraine O’Driscoll, Sweta Rani, Stephen F. Madden, Neil A. O’Brien, Charles Ginther, Dennis J. Slamon, Naomi Walsh, William M. Gallagher, Radosław Zagożdżon, R. William G. Watson, Norma O’Donovan, John Crown
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12885-020-07184-7

Low dose environmental radon exposure and breast tumor gene expression
Cited by: 5
Author(s): Cheng Peng, Natalie DuPré, Trang VoPham, Yujing J. Heng, Gabrielle M. Baker, Christopher A. Rubadue, Kimberly Glass, Abhijeet R. Sonawane, Oana A. Zeleznik, Peter Kraft, Susan E. Hankinson, A. Heather Eliassen, Jaime E. Hart, Francine Laden, Rulla M. Tamimi
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-018-4251-7

Comparative analysis of histologically classified oligodendrogliomas reveals characteristic molecular differences between subgroups
Cited by: 15
Author(s): Chris Lauber, Barbara Klink, Michael Seifert
Software Mentions: 1
Published: over 8 years ago

10.1186/s12885-016-2355-5

Progesterone receptor blockade in human breast cancer cells decreases cell cycle progression through G2/M by repressing G2/M genes
Cited by: 12
Author(s): Susan E. Clare, Akash Gupta, Mi Ran Choi, Manish Ranjan, Oukseub Lee, Jun Wang, David Ivancic, Julie Kim, Seema A. Khan
Software Mentions: 1
Published: over 10 years ago

10.1186/s12885-019-5838-3

Novel significant stage-specific differentially expressed genes in hepatocellular carcinoma
Cited by: 52
Author(s): Arjun Sarathi, Ashok Palaniappan
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-83138-8

MUTYH is associated with hepatocarcinogenesis in a non-alcoholic steatohepatitis mouse model
Cited by: 4
Author(s): Hiroki Sakamoto, Koji Miyanishi, Shingo Tanaka, Ryo Itô, Kota Hamaguchi, Akira Sakurada, Masanori Sato, Tomohiro Kubo, Takahiro Osuga, Kazuyuki Murase, Kohichi Takada, Yusaku Nakabeppu, Masayoshi Kobune, Junji Kato
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-83591-5

CSF proteome in multiple sclerosis subtypes related to brain lesion transcriptomes
Cited by: 7
Author(s): Maria L. Elkjaer, Arkadiusz Nawrocki, Tim Kacprowski, Pernille Lassen, Anja Hviid Simonsen, Romain Marignier, Tobias Sejbæk, Helle Hvilsted Nielsen, Lene Wermuth, Alyaa Yakut Rashid, Peter Høgh, Finn Sellebjerg, Richard Reynolds, Jan Baumbach, Martin R. Larsen, Zsolt Illés
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-82834-9

LINC00665 promotes the progression of acute myeloid leukemia by regulating the miR-4458/DOCK1 pathway
Cited by: 10
Author(s): Xiaoyu Yang, Yan Wang, Sulei Pang, Xiaojie Li, Panpan Wang, Ruojin Ma, Yunyun Ma, Chunge Song
Software Mentions: 1
Published: over 5 years ago

10.1186/s12974-017-0825-6

Astrocyte-specific overexpressed gene signatures in response to methamphetamine exposure in vitro
Cited by: 29
Author(s): Nikki Bortell, Liana V. Basova, Svetlana Semenova, Howard S. Fox, Timothy Ravasi, Maria Cecília Garibaldi Marcondes
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-021-85044-5

Integrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome
Cited by: 4
Author(s): Robert E. Moore, Bhanwar Lal Puniya, Robert Powers, Chittibabu Guda, Kenneth W. Bayles, David B. Berkowitz, Tomáš Helikar
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-84612-z

Validation of a multicellular tumor microenvironment system for modeling patient tumor biology and drug response
Cited by: 4
Author(s): Devin G. Roller, Stephen A. Hoang, Kristopher D. Rawls, Katherine A. Owen, Michael B. Simmers, Robert A. Figler, Julia Wulfkuhle, Emanuel F. Petricoin, Brian R. Wamhoff, Daniel Gioeli
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85237-y

Genome-wide identification and characterization of circular RNA in resected hepatocellular carcinoma and background liver tissue
Cited by: 5
Author(s): Yuki Sunagawa, Suguru Yamada, Fuminori Sonohara, Keisuke Kurimoto, Nobutake Tanaka, Yunosuke Suzuki, Yoshikuni Inokawa, Hideki Takami, Masamichi Hayashi, Mitsuro Kanda, Chie Tanaka, Goro Nakayama, Masahiko Koike, Yasuhiro Kodera
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85471-4

Global network analysis in Schizosaccharomyces pombe reveals three distinct consequences of the common 1-kb deletion causing juvenile CLN3 disease
Cited by: 6
Author(s): Christopher J. Minnis, StJohn Townsend, Julia Petschnigg, Elisa Tinelli, Jürg Bähler, Claire Russell, Sara Mole
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85877-0

Proteomic blood profiling in mild, severe and critical COVID-19 patients
Cited by: 61
Author(s): Hamel Patel, Nicholas J. Ashton, Richard Dobson, Lars‐Magnus Andersson, Aylin Yilmaz, Kaj Blennow, Magnus Gisslén, Henrik Zetterberg
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-86097-2

Identification of oxytocin-related lncRNAs and assessment of their expression in breast cancer
Cited by: 9
Author(s): Sepehr Behtaji, Soudeh Ghafouri‐Fard, Arezou Sayad, Ali Sattari, Mathieu Rederstorff, Mohammad Taheri
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-021-07959-6

Integrative genomic expression analysis reveals stable differences between lung cancer and systemic sclerosis
Cited by: 0
Author(s): Heng Li, Liping Ding, Xiaoping Hong, Yulan Chen, Rui Liao, Tingting Wang, Shuhui Meng, Zhuhua Jiang, Dongzhou Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-017-3100-4

The prognostic utility of the transcription factor SRF in docetaxel-resistant prostate cancer: in-vitro discovery and in-vivo validation
Cited by: 14
Author(s): Dara Lundon, Aidan Boland, Maria Prencipe, Grace Hurley, Amanda O’Neill, Elaine W. Kay, Sinéad Aherne, Padraig Doolan, Stephen F. Madden, Martin Clynes, Colm Morrissey, John M. Fitzpatrick, R. William G. Watson
Software Mentions: 1
Published: over 9 years ago

10.1186/s12885-020-07100-z

Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer
Cited by: 6
Author(s): Maryam Soleimani Dodaran, Simone Borgoni, Emre Sofyalı, Pernette J. Verschure, Stefan Wiemann, Perry D. Moerland, Antoine H. C. van Kampen
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-016-2539-z

Efficient generation of patient-matched malignant and normal primary cell cultures from clear cell renal cell carcinoma patients: clinically relevant models for research and personalized medicine
Cited by: 21
Author(s): Nazleen Lobo, Craig Gedye, Anthony J. Apostoli, Kevin R. Brown, Joshua Paterson, Natalie Stickle, Michael Robinette, Neil Fleshner, Robert J. Hamilton, Girish S. Kulkarni, Alexandre R. Zlotta, Andrew Evans, Antonio Finelli, Jason Moffat, Michael A.S. Jewett, Laurie Ailles
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-021-87362-0

Establishment and characterization of a new spontaneously immortalized ER−/PR−/HER2+ human breast cancer cell line, DHSF-BR16
Cited by: 2
Author(s): Stefania Nobili, Antonella Mannini, Astrid Parenti, Chiara Raggi, Andrea Lapucci, Giovanna Chiorino, Sara Paccosi, Paola Di Gennaro, Vania Vezzosi, Paolo Romagnoli, Tommaso Susini, Marcella Coronnello
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87168-0

Multi-omic analyses in Abyssinian cats with primary renal amyloid deposits
Cited by: 4
Author(s): Francesca Genova, Simona Nonnis, Elisa Maffioli, Gioacchino Tedeschi, M.G. Strillacci, Michela Carisetti, G. Sironi, Francesca Anna Cupaioli, Noemi Di Nanni, Alessandra Mezzelani, Ettore Mosca, Christopher R Helps, P.A.J. Leegwater, Laëtitia Dorso, M. Longeri
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-021-08591-0

Integration of RNA-Seq and proteomics data identifies glioblastoma multiforme surfaceome signature
Cited by: 13
Author(s): Saiful Effendi Syafruddin, Wan Fahmi Wan Mohamad Nazarie, Nurshahirah Ashikin Moidu, Bee Hong Soon, M. Aiman Mohtar
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.15662

PIF* promotes brain re-myelination locally while regulating systemic inflammation- clinically relevant multiple sclerosis <i>M.smegmatis</i> model
Cited by: 17
Author(s): Giuseppe Migliara, Martin Mueller, Alessia Piermattei, Chaya Brodie, Michael J. Paidas, Eytan R. Barnea, Francesco Ria
Software Mentions: 1
Published: over 9 years ago

10.1186/s12885-021-08637-3

Dysregulated paired related homeobox 1 impacts on hepatocellular carcinoma phenotypes
Cited by: 0
Author(s): Weronika Piorońska, Zeribe C. Nwosu, Mei Han, Michael Büttner, Matthias Ebert, Steven Dooley, Christoph Meyer
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-88489-w

Ulcerative colitis immune cell landscapes and differentially expressed gene signatures determine novel regulators and predict clinical response to biologic therapy
Cited by: 12
Author(s): Harrison M. Penrose, Rida Iftikhar, Morgan Collins, Eman A. Toraih, Emmanuelle Ruiz, Nathan Ungerleider, Hani Nakhoul, Erik Flemington, Emad Kandil, Shamita B. Shah, Suzana D. Savkovic
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88695-6

Differential root and shoot magnetoresponses in Arabidopsis thaliana
Cited by: 15
Author(s): Ivan A. Paponov, Judith Fliegmann, Ravishankar Narayana, Massimo E. Maffei
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88816-1

Inhibition of eEF2K synergizes with glutaminase inhibitors or 4EBP1 depletion to suppress growth of triple-negative breast cancer cells
Cited by: 5
Author(s): Youngjun Ju, Yaacov Ben‐David, Daniela Rotin, Eldad Zacksenhaus
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88465-4

Adulthood blood levels of hsa-miR-29b-3p associate with preterm birth and adult metabolic and cognitive health
Cited by: 9
Author(s): Saara Marttila, Suvi Rovio, Pashupati P. Mishra, Ilkka Seppälä, Leo-Pekka Lyytikäinen, Markus Juonala, Mélanie Waldenberger, Niku Oksala, Mika Ala‐Korpela, Emily W. Harville, Nina Hutri‐Kähönen, Mika Kähönen, Olli T. Raitakari, Terho Lehtimäki, Emma Raitoharju
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.203056

Comprehensive analysis of the competing endogenous circRNA-lncRNA-miRNA-mRNA network and identification of a novel potential biomarker for hepatocellular carcinoma
Cited by: 28
Author(s): Lu Zhang, Haisu Tao, Li Jiang, Erlei Zhang, Huifang Liang, Bixiang Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2407-14-54

A panel of genes methylated with high frequency in colorectal cancer
Cited by: 132
Author(s): Susan M. Mitchell, Jason P. Ross, Horace R. Drew, Thu Ho, Glenn Brown, Neil F. W. Saunders, Konsta Duesing, Michael Buckley, Robert Dunne, Iain Beetson, Keith N. Rand, Aidan McEvoy, Melissa L. Thomas, Rohan T. Baker, David Wattchow, Graeme P. Young, Trevor Lockett, Susanne K. Pedersen, Lawrence C. LaPointe, Peter L. Molloy
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-021-89789-x

Discovery of primary prostate cancer biomarkers using cross cancer learning
Cited by: 12
Author(s): Kaiyue Zhou, Suzan Arslanturk, Douglas B. Craig, Elisabeth I. Heath, Sorin Drăghici
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-021-08166-z

Bioinformatics analysis of mRNA and miRNA microarray to identify the key miRNA-mRNA pairs in cisplatin-resistant ovarian cancer
Cited by: 3
Author(s): Xue Bai, Shupeng Li, Xiance Jin, Lifeng Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-020-07598-3

Identification and validation of a six-gene signature associated with glycolysis to predict the prognosis of patients with cervical cancer
Cited by: 14
Author(s): Luya Cai, Chuan Hu, Shanshan Yu, Lixiao Liu, Xiaobo Yu, Jiahua Chen, Xuan Li, Fan Lin, Cheng Zhang, Wenfeng Li, Xiaojian Yan
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-90289-1

IGF1R and Src inhibition induce synergistic cytotoxicity in HNSCC through inhibition of FAK
Cited by: 9
Author(s): Christine E. Lehman, A. Benjamin Spencer, Sarah Hall, Jeremy J.P. Shaw, Julia Wulfkuhle, Emanuel F. Petricoin, Stefan Bekiranov, Mark J. Jameson, Daniel Gioeli
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-89578-6

Integrative web-based analysis of omics data for study of drugs against SARS-CoV-2
Cited by: 2
Author(s): Zhigang Wang, Yongqun He, Jing Huang, Xiaolin Yang
Software Mentions: 1
Published: over 5 years ago

10.1523/JNEUROSCI.1511-19.2019

Gamma Visual Stimulation Induces a Neuroimmune Signaling Profile Distinct from Acute Neuroinflammation
Cited by: 33
Author(s): Kristie M. Garza, Lu Zhang, Ben Borron, Levi B. Wood, Annabelle C. Singer
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-021-08293-7

A circular RNAs dataset landscape reveals potential signatures for the detection and prognosis of early-stage lung adenocarcinoma
Cited by: 5
Author(s): Zhiying Chen, Jiahui Wei, Min Li, Yufei Zhao
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-020-07590-x

Expression and prognostic analyses of the insulin-like growth factor 2 mRNA binding protein family in human pancreatic cancer
Cited by: 9
Author(s): Xiaoping Chen, Shu-Yi Hu, Chen Zhu, Xihu Qin
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2407-10-627

Tumour auto-antibody screening: performance of protein microarrays using SEREX derived antigens
Cited by: 19
Author(s): René Stempfer, Parvez Syed, Klemens Vierlinger, Rudolf Pichler, Eckart Meese, Petra Leidinger, Nicole Ludwig, Albert Kriegner, Christa Nöhammer, Andreas Weinhäusel
Software Mentions: 1
Published: almost 16 years ago

10.1038/s41598-021-92603-3

TXNDC2 joint molecular marker is associated with testis pathology and is an accurate predictor of sperm retrieval
Cited by: 3
Author(s): Seyed-Morteza Javadirad, Mohammad Javad Mokhtari
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-018-4633-x

Interleukin 8 is a biomarker of telomerase inhibition in cancer cells
Cited by: 3
Author(s): Peter D. Solomon, Yujuan Dong, Shaillay Kumar Dogra, Romi Gupta
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-021-93789-2

Integrative analysis of key candidate genes and signaling pathways in acute coronary syndrome related to obstructive sleep apnea by bioinformatics
Cited by: 2
Author(s): Yanxi Shi, Zhengye Jiang, Liqin Jiang, Jianjiang Xu
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-020-07725-0

Identification of a novel six autophagy-related genes signature for the prognostic and a miRNA-related autophagy predictor for anti-PD-1 therapy responses in prostate cancer
Cited by: 9
Author(s): Lei Wu, Quan Wen, Guojun Yue, Qiong Luo, Dongxu Peng, Ying Pan, Guihai Zhang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-93780-x

Growth arrest and DNA damage-inducible proteins (GADD45) in psoriasis
Cited by: 6
Author(s): Pedro Rodríguez‐Jiménez, Lola Fernández-Messina, María C. Ovejero‐Benito, Pablo Chicharro, Paula Vera-Tomé, Alicia Vara, Danay Cibrián, Pedro Martínez‐Fleta, María Jiménez-Fernández, Inés Sánchez-García, Mar Llamas‐Velasco, Francisco Abad‐Santos, Francisco Sánchez-Madrid, E. Daudén, Hortensia de la Fuente
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-94154-z

MiR-486-3p was downregulated at microRNA profiling of adrenals of multiple endocrine neoplasia type 1 mice, and inhibited human adrenocortical carcinoma cell lines
Cited by: 1
Author(s): Su-Chen Li, Azita Monazzam, Masoud Razmara, Xia Chu, Peter Stålberg, Britt Skogseid
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-021-08525-w

Bioinformatics analysis of C3 and CXCR4 demonstrates their potential as prognostic biomarkers in clear cell renal cell carcinoma (ccRCC)
Cited by: 5
Author(s): Jing Quan, Yuchen Bai, Yunbei Yang, Er Lei Han, Hong Bai, Qi Zhang, Dahong Zhang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-020-06869-3

SCDb: an integrated database of stomach cancer
Cited by: 7
Author(s): Erli Gu, Wei Song, Ajing Liu, Wang Hong
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-94554-1

Honey bee queen health is unaffected by contact exposure to pesticides commonly found in beeswax
Cited by: 7
Author(s): Alison McAfee, Joseph Milone, Bradley N. Metz, Erin McDermott, Leonard J. Foster, David R. Tarpy
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-018-4546-8

Gene expression profiling of 1200 pancreatic ductal adenocarcinoma reveals novel subtypes
Cited by: 55
Author(s): Liang Zhao, Hongya Zhao, Hong Yan
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-94532-7

Experimental long-term diabetes mellitus alters the transcriptome and biomechanical properties of the rat urinary bladder
Cited by: 7
Author(s): Emad A. Hindi, Craig J. Williams, Leo Zeef, Filipa Lopes, Katie Newman, Martha M. M. Davey, Nigel Hodson, Emma Hilton, Jennifer L. Huang, Karen Price, Neil Roberts, David A. Long, Adrian S. Woolf, Natalie J. Gardiner
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2407-10-599

Prioritizing genes associated with prostate cancer development
Cited by: 33
Author(s): Ivan P. Gorlov, Kanishka Sircar, Hongya Zhao, Sankar N. Maity, Nora M. Navone, Olga Y. Gorlova, Patricia Troncoso, Curtis A. Pettaway, Jin Young Byun, Christopher J. Logothetis
Software Mentions: 1
Published: almost 16 years ago

10.1038/s41598-021-95120-5

Whole blood gene expression within days after total-body irradiation predicts long term survival in Gottingen minipigs
Cited by: 4
Author(s): Sunita Chopra, Maria Moroni, Jaleal Sanjak, Laurel MacMillan, Bernadette Hritzo, Shannon Martello, Michelle Bylicky, Jared M. May, C. Norman Coleman, Molykutty J. Aryankalayil
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-95902-x

Immunomodulation by durvalumab and pomalidomide in patients with relapsed/refractory multiple myeloma
Cited by: 2
Author(s): Mary Young, Greg E. Pietz, Elizabeth Whalen, Wilbert B. Copeland, Ethan Thompson, Brian Fox, Kathryn J. Newhall
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.103107

Identification and validation of the angiogenic genes for constructing diagnostic, prognostic, and recurrence models for hepatocellular carcinoma
Cited by: 9
Author(s): Jinyu Zhu, Bufu Tang, Jie Li, Yueli Shi, Minjiang Chen, Xiuling Lv, Miaomiao Meng, Qiaoyou Weng, Nannan Zhang, Kai Fan, Min Xu, Jiansong Ji
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-95293-z

Early prognosis of respiratory virus shedding in humans
Cited by: 3
Author(s): Manuchehr Aminian, Tomojit Ghosh, Amy Peterson, Angela L. Rasmussen, Shannon Stiverson, Kartikay Sharma, Michael Kirby
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-96855-x

Deep learning from HE slides predicts the clinical benefit from adjuvant chemotherapy in hormone receptor-positive breast cancer patients
Cited by: 5
Author(s): Soo Youn Cho, Jeong Hoon Lee, Jai Min Ryu, Jeong Eon Lee, Eun Yoon Cho, Chang Ho Ahn, Kyunghyun Paeng, Inwan Yoo, Chan‐Young Ock, Sang Yong Song
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-96875-7

A virus-free cellular model recapitulates several features of severe COVID-19
Cited by: 3
Author(s): G Lavorgna, Giulio Cavalli, Lorenzo Dagna, Silvia Gregori, Alessandro Larcher, Giovanni Landoni, Fabio Ciceri, Francesco Montorsi, Andrea Salonia
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.203300

LncRNA CCAT1 promotes prostate cancer cells proliferation, migration, and invasion through regulation of miR-490-3p/FRAT1 axis
Cited by: 9
Author(s): Xiaowei Cai, Yiheng Dai, Peng Gao, Guanyu Ren, Dingcai Cheng, Bo Wang, Yi Wang, Jian Yu, Yueyao Du, Xizhi Wang, Boxin Xue
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2407-14-353

Investigation of HOXA9 promoter methylation as a biomarker to distinguish oral cancer patients at low risk of neck metastasis
Cited by: 16
Author(s): Kenichiro Uchida, Ratna Veeramachaneni, Bing Huey, Aditi Bhattacharya, Brian L. Schmidt, Donna G. Albertson
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-021-97433-x

Quantitative global lipidomics analysis of patients with ovarian cancer versus benign adnexal mass
Cited by: 10
Author(s): Matthew F. Buas, Charles W. Drescher, Nicole Urban, Christopher I. Li, Lisa Bettcher, Nitai C. Hait, Kirsten B. Moysich, Kunle Odunsi, Daniel Raftery, Li Yan
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-97406-0

KCa channel blockers increase effectiveness of the EGF receptor TK inhibitor erlotinib in non-small cell lung cancer cells (A549)
Cited by: 14
Author(s): Felix Glaser, Petra Hundehege, Etmar Bulk, Luca Matteo Todesca, Sandra Schimmelpfennig, Elke Nass, Thomas Budde, Sven G. Meuth, Albrecht Schwab
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.6379

Different prognostic impact of<i>STK11</i>mutations in non-squamous non-small-cell lung cancer
Cited by: 59
Author(s): Nicolas Pécuchet, Pierre Laurent‐Puig, Audrey Lupo, Antoine Legras, Marco Alifano, Karine Pallier, Audrey Didelot, Laure Gibault, Claire Danel, Pierre‐Alexandre Just, Marc Riquet, Françoise Le Pimpec-Barthes, Diane Damotte, Elizabeth Fabre, Hélène Blons
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-021-98580-x

Altered microRNA and mRNA profiles during heart failure in the human sinoatrial node
Cited by: 8
Author(s): Ning Li, Esthela J. Artiga, Anuradha Kalyanasundaram, Brian J. Hansen, Amy Webb, Maciej Pietrzak, Brandon J. Biesiadecki, Bryan A. Whitson, Nahush A. Mokadam, Paul M.L. Janssen, John D. Hummel, Peter J. Mohler, Halina Dobrzynski, Vadim V. Fedorov
Software Mentions: 1
Published: almost 5 years ago

10.1155/2013/197406

A Local Genetic Algorithm for the Identification of Condition-Specific MicroRNA-Gene Modules
Cited by: 0
Author(s): Wenbo Mu, Damian Roqueiro, Yue Dai
Software Mentions: 1
Published: over 13 years ago

10.1186/2044-5040-1-15

Deregulation of the ubiquitin-proteasome system is the predominant molecular pathology in OPMD animal models and patients
Cited by: 38
Author(s): Seyed Yahya Anvar, Peter A C ‘t Hoen, Andrea Venema, Barbara van der Sluijs, B.G.M. van Engelen, M.M.J. Snoeck, John Vissing, Capucine Trollet, George Dickson, Aymeric Chartier, Martine Simonelig, Gert‐Jan B. van Ommen, Silvère M. van der Maarel, Vered Raz
Software Mentions: 1
Published: over 15 years ago

10.18632/aging.103245

Identification and validation of hub microRNAs dysregulated in esophageal squamous cell carcinoma
Cited by: 16
Author(s): Chen Sang, Ce Chao, Wang Min, Youpu Zhang, Guanghua Luo, Xiaoying Zhang
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.202862

Methylation factor MRPL15 identified as a potential biological target in Alzheimer’s disease
Cited by: 2
Author(s): Li Gao, Jianmei Li, Ming Yan, Aili Maimaiti
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-020-06743-2

INHBA is a prognostic predictor for patients with colon adenocarcinoma
Cited by: 40
Author(s): Xueying Li, Weiming Yu, Chao Liang, Yuan Xu, Miaozun Zhang, Xiaoyun Ding, Xianlei Cai
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-015-1827-3

Gene expression profiling analysis of CRTC1-MAML2 fusion oncogene-induced transcriptional program in human mucoepidermoid carcinoma cells
Cited by: 28
Author(s): Jie Chen, Jianliang Li, Zirong Chen, James D. Griffin, Lizi Wu
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12885-021-08212-w

SNX10 and PTGDS are associated with the progression and prognosis of cervical squamous cell carcinoma
Cited by: 8
Author(s): Pinping Jiang, Ying Cao, Feng Gao, Wei Sun, Jinhui Liu, Ziyan Ma, Minhao Xie, Shilong Fu
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2407-9-321

Identification of Achaete-scute complex-like 1 (ASCL1) target genes and evaluation of DKK1 and TPH1 expression in pancreatic endocrine tumours
Cited by: 10
Author(s): Térèse Johansson, Gunnar Westin, Britt Skogseid
Software Mentions: 1
Published: about 17 years ago

10.1186/s12885-020-07316-z

Interconnectivity between molecular subtypes and tumor stage in colorectal cancer
Cited by: 13
Author(s): Robert R.J. Coebergh van den Braak, Sanne ten Hoorn, Anieta M. Sieuwerts, Jurriaan B. Tuynman, Marcel Smid, Saskia M. Wilting, John W.M. Martens, Cornelis J.A. Punt, John A. Foekens, Jan Paul Medema, Jan N.M. IJzermans, Louis Vermeulen
Software Mentions: 1
Published: about 6 years ago

10.18632/aging.102765

Testicular biopsies microarray analysis reveals circRNAs are involved in the pathogenesis of non-obstructive azoospermia
Cited by: 8
Author(s): Hao Bo, Zhizhong Liu, Ruiling Tang, Guanghui Gong, Xingming Wang, Han Zhang, Fang Zhu, Dai Zhou, Wenbing Zhu, Yue‐Qiu Tan, Liqing Fan
Software Mentions: 1
Published: over 6 years ago

10.1016/j.stemcr.2015.02.021

Emergence of a Stage-Dependent Human Liver Disease Signature with Directed Differentiation of Alpha-1 Antitrypsin-Deficient iPS Cells
Cited by: 75
Author(s): Andrew Wilson, Ying Lei, Marc Liesa, Charis Patricia Segeritz, Jason A. Mills, Steven S. Shen, Jyh‐Chang Jean, Geordie C. Lonza, Derek C. Liberti, Alex H. Lang, Jean Nazaire, Adam C. Gower, Franz Josef Müeller, Pankaj Mehta, Adriana Ordóñez, David A. Lomas, Ludovic Vallier, George J. Murphy, Gustavo Mostoslavsky, Avrum Spira, Orian S. Shirihai, María I. Ramirez, Paul Gadue, Darrell N. Kotton
Software Mentions: 1
Published: over 11 years ago

10.1016/j.stemcr.2018.09.015

Human Induced Pluripotent Stem Cell-Derived Astrocytes Are Differentially Activated by Multiple Sclerosis-Associated Cytokines
Cited by: 107
Author(s): Sylvain Perriot, Amandine Mathias, Guillaume Perriard, Mathieu Canales, Nils Jonkmans, Nicolas Mérienne, Cécile Meunier, Lina El Kassar, Anselme L. Perrier, David‐Axel Laplaud, Myriam Schluep, Nicole Déglon, Renaud Du Pasquier
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.stemcr.2019.07.004

A Human Stem Cell Model of Fabry Disease Implicates LIMP-2 Accumulation in Cardiomyocyte Pathology
Cited by: 44
Author(s): Matthew J. Birket, Sophie Raibaud, Miriam Lettieri, Antony Adamson, Valérie Letang, Pauline Cervello, Nicolas Redon, Gwénaëlle Ret, Sandra Viale, Bing Wang, Bruno Biton, Jean‐Claude Guillemot, Vincent Mikol, John P. Leonard, Neil A. Hanley, Cécile Orsini, Jean-Michel Itier
Software Mentions: 1
Published: about 7 years ago

10.1016/j.stemcr.2019.12.012

Senescence-Associated Metabolomic Phenotype in Primary and iPSC-Derived Mesenchymal Stromal Cells
Cited by: 53
Author(s): Eduardo Fernández-Rebollo, Julia Franzen, Roman Goetzke, Jonathan Hollmann, Alina Ostrowska, Matteo Oliverio, Torsten Sieben, Björn Rath, Jan-Wilhelm Kornfeld, Wolfgang Wagner
Software Mentions: 1
Published: over 6 years ago

10.1186/scrt130

The gene expression profiles of induced pluripotent stem cells from individuals with childhood cerebral adrenoleukodystrophy are consistent with proposed mechanisms of pathogenesis
Cited by: 27
Author(s): Xiao Ming Wang, Wing Yan Yik, Peilin Zhang, Wange Lu, Patricia Dranchak, Darryl Shibata, Steven J. Steinberg, Joseph G. Hacia
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13287-017-0582-6

Term amniotic fluid: an unexploited reserve of mesenchymal stromal cells for reprogramming and potential cell therapy applications
Cited by: 36
Author(s): Roksana Moraghebi, Agnete Kirkeby, Patrícia Chaves, Roger Emanuel Rönn, Ewa Sitnicka, Malin Parmar, Marcus Larsson, Andreas Herbst, Niels Bjarne Woods
Software Mentions: 1
Published: about 9 years ago

10.1186/s13287-018-0848-7

Expression profiling of cell-intrinsic regulators in the process of differentiation of human iPSCs into retinal lineages
Cited by: 15
Author(s): Jen Hua Chuang, Aliaksandr A. Yarmishyn, De‐Kuang Hwang, Chih Chien Hsu, Mong‐Lien Wang, Yi Yang, Ke Hung Chien, Shih Hwa Chiou, Chi Hsien Peng, Shih‐Jen Chen
Software Mentions: 1
Published: over 8 years ago

10.1186/s13287-020-1576-3

MicroRNA-495 confers inhibitory effects on cancer stem cells in oral squamous cell carcinoma through the HOXC6-mediated TGF-β signaling pathway
Cited by: 20
Author(s): Xiaolong You, Zhengyu Zhou, Wen Chen, Xiaoyong Wei, Heqiang Zhou, Wenzheng Luo
Software Mentions: 1
Published: over 6 years ago

10.1186/s13287-020-01754-z

Long noncoding RNA LINC00314 facilitates osteogenic differentiation of adipose-derived stem cells through the hsa-miR-129-5p/GRM5 axis via the Wnt signaling pathway
Cited by: 15
Author(s): Shi Z, Hua Zhang, Zhiyong Fan, Wei Ma, Yang Song, Ming Li, Tong-qiu Li, Shuxing Cao, Guo-jun Feng
Software Mentions: 1
Published: about 6 years ago

10.18632/aging.102092

Exosomes derived from microRNA-199a-overexpressing mesenchymal stem cells inhibit glioma progression by down-regulating AGAP2
Cited by: 67
Author(s): Lei Yu, Si Gui, Yawei Liu, Xiaoyu Qiu, Guozhong Zhang, Xian Zhang, Jun Pan, Jun Fan, Songtao Qi, Binghui Qiu
Software Mentions: 1
Published: about 7 years ago

10.1186/s13287-021-02160-9

Alpha-enolase (ENO1), identified as an antigen to monoclonal antibody 12C7, promotes the self-renewal and malignant phenotype of lung cancer stem cells by AMPK/mTOR pathway
Cited by: 7
Author(s): Shunbin Xiong, Kai-Yue Cao, Huiqi Liu, Yu Lan, Lixin Sun, Zhihua Yang, Chengai Wu, Yuliang Ran
Software Mentions: 1
Published: over 5 years ago

10.1186/s13287-021-02282-0

Exosomes derived from miR-26a-modified MSCs promote axonal regeneration via the PTEN/AKT/mTOR pathway following spinal cord injury
Cited by: 38
Author(s): Yuyong Chen, Zhenming Tian, Lei He, Can Liu, Nangxiang Wang, Limin Rong, Bin Liu
Software Mentions: 1
Published: over 5 years ago

10.1002/stem.2093

Genome-Wide MicroRNA and Gene Analysis of Mesenchymal Stem Cell Chondrogenesis Identifies an Essential Role and Multiple Targets for miR-140-5p
Cited by: 69
Author(s): M.J. Barter, M. Tselepi, Rodolfo Gómez, Steven Paul Woods, Hui Wang, Graham R. Smith, Daryl P. Shanley, Ian M. Clark, David A. Young
Software Mentions: 1
Published: about 11 years ago

10.1155/2016/2626081

Genetic Background of Immune Complications after Allogeneic Hematopoietic Stem Cell Transplantation in Children
Cited by: 3
Author(s): Szymon Skoczeń, Mirosław Bik-Multanowski, Jacek J Pietrzyk, Agnieszka Grabowska, Kamil Fijorek, Wojciech Strojny, Kinga Klus-Kwiecińska, Walentyna Balwierz, Maciej Siedlar
Software Mentions: 1
Published: over 10 years ago

10.1155/2019/1351860

Promoting Osteogenic Differentiation of Human Adipose-Derived Stem Cells by Altering the Expression of Exosomal miRNA
Cited by: 36
Author(s): Shude Yang, Shu Guo, S. Y. Tong, Xu Sun
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2407-9-441

Transcribed-ultra conserved region expression is associated with outcome in high-risk neuroblastoma
Cited by: 95
Author(s): Paola Scaruffi, Sara Stigliani, Stefano Moretti, Simona Coco, Carla De Vecchi, Francesca Valdora, Alberto Garaventa, Stefano Bonassi, Gian Paolo Tonini
Software Mentions: 1
Published: almost 17 years ago

10.18632/aging.104079

Effect of lncRNA WT1-AS regulating WT1 on oxidative stress injury and apoptosis of neurons in Alzheimer's disease via inhibition of the miR-375/SIX4 axis
Cited by: 32
Author(s): Quanbao Wang, Xiumin Ge, Jie Zhang, Licheng Chen
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2407-13-231

Age dependence of tumor genetics in unfavorable neuroblastoma: arrayCGH profiles of 34 consecutive cases, using a Swedish 25-year neuroblastoma cohort for validation
Cited by: 9
Author(s): Cihan Cetinkaya, Tommy Martinsson, Johanna Sandgren, Catarina Träger, Per Kogner, Jan P. Dumanski, Teresita Díaz de Ståhl, Fredrik Hedborg
Software Mentions: 1
Published: over 13 years ago

10.1186/s12885-016-2212-6

Dynamic modulation of phosphoprotein expression in ovarian cancer xenograft models
Cited by: 5
Author(s): Antonis Koussounadis, Simon P. Langdon, In Hwa Um, Charlene Kay, Kyle Francis, David J. Harrison, V. Anne Smith
Software Mentions: 1
Published: over 10 years ago

10.7150/thno.43145

Renal tubular Bim mediates the tubule-podocyte crosstalk via NFAT2 to induce podocyte cytoskeletal dysfunction
Cited by: 9
Author(s): Chunmei Xu, Xiaojun Zhou, Tianyue Xie, Yuan Zhou, Qian Zhang, Shan Jiang, Rui Zhang, Lin Liao, Jianjun Dong
Software Mentions: 1
Published: over 6 years ago

Projects: bioconductor: limma

Science Score: 78/100

Bonuses:

Penalties:

Papers Mentioning limma 7,776