bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-11248-3

MicroRNA-196b inhibits late apoptosis of pancreatic cancer cells by targeting CADM1
Cited by: 17
Author(s): Hongling Wang, Rui Zhou, Jing Liu, Ying Chang, Liu Shi, Xiaobing Wang, Meifang Huang, Qiu Zhao
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-09753-6

Low level activity thresholds for changes in NMR biomarkers and genes in high risk subjects for Type 2 Diabetes
Cited by: 2
Author(s): Karl‐Heinz Herzig, Juhani Leppäluoto, Jari Jokelainen, Emmanuelle Meugnier, Sandra Pesenti, Harri Selänne, Kari Mäkelä, Riikka Ahola, Timo Jämsä, Hubert Vidal, Sirkka Keinänen‐Kiukaanniemi
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.omtn.2020.01.019

Discovering Cancer-Related miRNAs from miRNA-Target Interactions by Support Vector Machines
Cited by: 7
Author(s): Cong Pian, Shanjun Mao, Guangle Zhang, Jin Du, Fēi Li, Suet Yi Leung, Xiaodan Fan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-11928-0

Differential expression and co-expression gene networks reveal candidate biomarkers of boar taint in non-castrated pigs
Cited by: 24
Author(s): Markus Drag, Ruta Skinkyté-Juskiené, Duy Ngoc, Lisette J. A. Kogelman, Haja N. Kadarmideen
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.omtn.2019.12.029

RETRACTED: The Potential Therapeutic Role of Exosomal MicroRNA-520b Derived from Normal Fibroblasts in Pancreatic Cancer
Cited by: 16
Author(s): Huijuan Shi, Hui Li, Tiantian Zhen, Yu Dong, Xiaojuan Pei, Xiangliang Zhang
Software Mentions: 1
Published: over 6 years ago

10.1016/j.omtn.2018.07.018

A Transcriptome-Level Study Identifies Changing Expression Profiles for Ossification of the Ligamentum Flavum of the Spine
Cited by: 21
Author(s): Yan Han, Yuheng Hong, Liandong Li, Tengshuai Li, Zhen Zhang, Jingzhao Wang, Xia Han, Yutao Tang, Zhemin Shi, Xiaohui Han, Ting Chen, Qi Liu, Mengxia Zhang, Kun Zhang, Hong Wang, Yuan Xue
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-13644-1

Minimal methylation classifier (MIMIC): A novel method for derivation and rapid diagnostic detection of disease-associated DNA methylation signatures
Cited by: 22
Author(s): Ed C. Schwalbe, Debbie Hicks, Gholamreza Rafiee, Matthew Bashton, Henning Gohlke, Amir Enshaei, Sandeep Potluri, Jessie Matthiesen, Michael Mather, Pim Taleongpong, Ria Chaston, Angela Silmon, Amalia De Curtis, Janet C. Lindsey, Stephen Crosier, Amanda Smith, Tobias Goschzik, François Doz, Stefan Rutkowski, Birgitta Lannering, Torsten Pietsch, Simon Bailey, Daniel Williamson, Steven C. Clifford
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.omtn.2019.02.022

RETRACTED: Bone Marrow Mesenchymal Stem Cell-Derived Exosomal MicroRNA-126-3p Inhibits Pancreatic Cancer Development by Targeting ADAM9
Cited by: 90
Author(s): Dongmei Wu, Xin Wen, Xin‐Rui Han, Shan Wang, Yongjian Wang, Min Shen, Shao‐Hua Fan, Zi-Feng Zhang, Qun Shan, Meng‐Qiu Li, Bin Hu, Jun Lü, Guiquan Chen, Yuxin Zheng
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.12257

Integration of zebrafish fin regeneration genes with expression data of human tumors in silico uncovers potential novel melanoma markers
Cited by: 26
Author(s): Martin Hagedorn, Géraldine Siegfried, Katarzyna B. Hooks, Abdel‐Majid Khatib
Software Mentions: 1
Published: almost 10 years ago

10.3390/ani10091680

Identification of the Key microRNAs and miRNA-mRNA Interaction Networks during the Ovarian Development of Hens
Cited by: 8
Author(s): Jing Li, Chong Li, Qi Li, Wenting Li, Hong Li, Guoxi Li, Xiangtao Kang, Xiaojun Liu, Yadong Tian
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-14067-8

In-silico gene essentiality analysis of polyamine biosynthesis reveals APRT as a potential target in cancer
Cited by: 10
Author(s): Jon Pey, Edurne San José‐Eneriz, María C. Ochoa, Iñigo Apaolaza, Pedro de Atauri, Ángel Rubio, Xabier Cendoya, Estíbaliz Miranda, Leire Gárate, Marta Cascante, Arkaitz Carracedo, Xabier Agirre, Felipe Prósper, Francisco J. Planes
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.omtn.2020.08.020

GC-Derived EVs Enriched with MicroRNA-675-3p Contribute to the MAPK/PD-L1-Mediated Tumor Immune Escape by Targeting CXXC4
Cited by: 23
Author(s): Ping Li, Xingdong Luo, Yue Xie, Pengfei Li, Fangyong Hu, Junfeng Chu, Xiaojun Chen, Wenbo Song, Ali Wang, Xiang Gu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-69691-8

Survival differences and associated molecular signatures of DNMT3A-mutant acute myeloid leukemia patients
Cited by: 15
Author(s): Chris Lauber, Nádia Correia, Andreas Trumpp, Michael A. Rieger, Anna Dolnik, Lars Bullinger, Ingo Roeder, Michael Seifert
Software Mentions: 1
Published: about 6 years ago

10.15252/msb.20145486

Drugs that reverse disease transcriptomic signatures are more effective in a mouse model of dyslipidemia
Cited by: 41
Author(s): Allon Wagner, Noa Cohen, Thomas Kelder, Uri Amit, Elad Liebman, David M. Steinberg, Marijana Radonjić, Eytan Ruppin
Software Mentions: 1
Published: over 11 years ago

10.18632/oncotarget.12130

RNF43 and ZNRF3 are commonly altered in serrated pathway colorectal tumorigenesis
Cited by: 77
Author(s): Catherine Bond, Diane McKeone, Murugan Kalimutho, Mark Bettington, Sally-Ann Pearson, Troy Dumenil, Leesa Wockner, Matthew Burge, Barbara A. Leggett, Vicki Whitehall
Software Mentions: 1
Published: almost 10 years ago

10.3390/ani11051443

Transcription Landscape of the Early Developmental Biology in Pigs
Cited by: 3
Author(s): Susana Amaral Teixeira, Daniele Botelho Diniz Marques, Thaís Correia Costa, Hellenn Cardoso Oliveira, Karine Assis Costa, Eula Regina Carrara, Walmir da Silva, José Domingos Guimarães, Mariana Machado‐Neves, A. M. G. Ibelli, Maurício Egídio Cantão, Mônica Corrêa Ledur, J. O. Peixoto, Simone Eliza Facioni Guimarães
Software Mentions: 1
Published: over 5 years ago

10.15252/msb.20209628

In vitro and in vivo identification of clinically approved drugs that modify <scp>ACE</scp> 2 expression
Cited by: 42
Author(s): Sanju Sinha, Kuoyuan Cheng, Alejandro A. Schäffer, Kenneth Aldape, Eyal Schiff, Eytan Ruppin
Software Mentions: 1
Published: about 6 years ago

10.15252/msb.20145625

Ultrasensitive proteome analysis using paramagnetic bead technology
Cited by: 746
Author(s): Christopher S. Hughes, Sophia Föehr, David Garfield, Eileen E. M. Furlong, Lars M. Steinmetz, Jeroen Krijgsveld
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41380-018-0043-3

Violent aggression predicted by multiple pre-adult environmental hits
Cited by: 20
Author(s): Marina Mitjans, Jan Seidel, Martin Begemann, Fabian Bockhop, Jorge Moya-Higueras, V. Bansal, Janina Wesolowski, Anna Seelbach, Manuel I. Ibáñez, Fatka Kovacevic, Oguzhan Duvar, Lourdes Fañanás, Hannah-Ulrike Wolf, Generós Ortet, Peter Zwanzger, Verena Klein, Ina Lange, A. Tänzer, Manuela Dudeck, Lars Penke, Ludger Tebartz van Elst, Robert A. Bittner, Richard Schmidmeier, Roland Freese, Rüdiger Müller-Isberner, Jens Wiltfang, Thomas Bliesener, Stefan Bonn, Luise Poustka, Jürgen Müller, Bárbara Arias, Hannelore Ehrenreich
Software Mentions: 1
Published: over 8 years ago

10.18632/aging.202862

Methylation factor MRPL15 identified as a potential biological target in Alzheimer’s disease
Cited by: 2
Author(s): Li Gao, Jianmei Li, Ming Yan, Aili Maimaiti
Software Mentions: 1
Published: over 5 years ago

10.1038/s41380-018-0086-5

Gut microbiota modulate neurobehavior through changes in brain insulin sensitivity and metabolism
Cited by: 153
Author(s): Marion Soto, Clémence Herzog, Julian Avila Pacheco, Shiho Fujisaka, Kevin Bullock, Clary B. Clish, C. Ronald Kahn
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-020-70687-7

Altered serum protein levels in frontotemporal dementia and amyotrophic lateral sclerosis indicate calcium and immunity dysregulation
Cited by: 22
Author(s): Jared S. Katzeff, Fiona Bright, Kitty Lo, Jillian J. Kril, Angela Connolly, Ben Crossett, Lars M. Ittner, Michael Kassiou, Clement T. Loy, John R. Hodges, Olivier Piguet, Matthew C. Kiernan, Glenda M. Halliday, Woojin Scott Kim
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.12118

Somatic polyploidy is associated with the upregulation of c-MYC interacting genes and EMT-like signature
Cited by: 39
Author(s): Alejandro Vázquez-Martín, Olga V. Anatskaya, Alessandro Giuliani, Jekaterina Ērenpreisa, Sui Huang, Kristīne Salmiņa, Inna Inashkina, Anda Huna, Nikolay Nikolsky, Alexander E. Vinogradov
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-020-70832-2

Machine learning for RNA sequencing-based intrinsic subtyping of breast cancer
Cited by: 30
Author(s): Silvia Cascianelli, Ivan Molineris, Claudio Isella, Marco Masseroli, Enzo Medico
Software Mentions: 1
Published: about 6 years ago

10.1155/2021/7394344

PP2 Ameliorates Renal Fibrosis by Regulating the NF-κB/COX-2 and PPARγ/UCP2 Pathway in Diabetic Mice
Cited by: 11
Author(s): Jinying Wei, Xia Deng, Li Yang, Runmei Li, Zhaohua Yang, Xiuyuan Li, Shan Song, Yonghong Shi, Huijun Duan, Haijiang Wu
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-71852-8

The synergistic interaction of thermal stress coupled with overstocking strongly modulates the transcriptomic activity and immune capacity of rainbow trout (Oncorhynchus mykiss)
Cited by: 16
Author(s): Alexander Rebl, Tomáš Korytář, Andreas Borchel, Ralf Bochert, Joanna Ewa Strzelczyk, Tom Goldammer, Marieke Verleih
Software Mentions: 1
Published: about 6 years ago

10.1038/s41380-018-0258-3

Integrative approach to sporadic Alzheimer’s disease: deficiency of TYROBP in a tauopathy mouse model reduces C1q and normalizes clinical phenotype while increasing spread and state of phosphorylation of tau
Cited by: 43
Author(s): Mickaël Audrain, Jean‐Vianney Haure‐Mirande, Minghui Wang, Soong Ho Kim, Tomas Fanutza, Paramita Chakrabarty, Paul E. Fraser, Peter St George-Hyslop, Todd E. Golde, Robert D. Blitzer, Eric E. Schadt, Bin Zhang, Michelle E. Ehrlich, Sam Gandy
Software Mentions: 1
Published: almost 8 years ago

10.1111/mpp.12564

A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection
Cited by: 56
Author(s): Neil Andrew Brown, J. Evans, Andrew Mead, K. E. Hammond‐Kosack
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.13284

Specific micro-RNA expression patterns distinguish the basal and luminal subtypes of muscle-invasive bladder cancer
Cited by: 30
Author(s): Andrea Ochoa, Woonyoung Choi, Xiaoping Su, Arlene Siefker-Radtke, Bogdan Czerniak, Colin P. Dinney, David J. McConkey
Software Mentions: 1
Published: almost 10 years ago

10.3390/ani9040137

Data Mining and Validation of AMPK Pathway as a Novel Candidate Role Affecting Intramuscular Fat Content in Pigs
Cited by: 9
Author(s): Chaogang Yao, Daxin Pang, Chao Lu, Aotian Xu, Peixuan Huang, Hongsheng Ouyang, Hao Yu
Software Mentions: 1
Published: over 7 years ago

10.1007/s00726-015-1956-7

Homocysteine thiolactone and N-homocysteinylated protein induce pro-atherogenic changes in gene expression in human vascular endothelial cells
Cited by: 74
Author(s): Dorota Gurda, Luiza Handschuh, Weronika Kotkowiak, Hieronim Jakubowski
Software Mentions: 1
Published: over 11 years ago

10.18632/oncotarget.13610

Membrane-bound ICAM-1 contributes to the onset of proinvasive tumor stroma by controlling acto-myosin contractility in carcinoma-associated fibroblasts
Cited by: 15
Author(s): Stéphanie Bonan, Jean Albrengues, Eloïse M. Grasset, Sanya-Eduarda Kužet, Nicolas Nottet, Isabelle Bourget, Thomas Bertero, Bernard Mari, Guerríno Meneguzzi, Cédric Gaggioli
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-020-72955-y

Arabidopsis, tobacco, nightshade and elm take insect eggs as herbivore alarm and show similar transcriptomic alarm responses
Cited by: 14
Author(s): Tobias Lortzing, Reinhard Kunze, Anke Steppuhn, Monika Hilker, Tobias Lortzing
Software Mentions: 1
Published: almost 6 years ago

10.1164/rccm.202005-1761OC

Circulating BMP9 Protects the Pulmonary Endothelium during Inflammation-induced Lung Injury in Mice
Cited by: 27
Author(s): Wei Li, Long Lü, Xudong Yang, Zhen Tong, Mark Southwood, Ross King, Paola Caruso, Paul D. Upton, Peiran Yang, Geoffrey A Bocobo, Ivana Nikolić, Angelica Higuera, Richard M. Salmon, He Jiang, Katharine M Lodge, Kim Hoenderdos, Rebecca M. Baron, Paul B. Yu, Alison M. Condliffe, Charlotte Summers, Sussan Nourshargh, Edwin R. Chilvers, Nicholas W. Morrell
Software Mentions: 1
Published: over 5 years ago

10.1002/1878-0261.12444

Obesity‐induced <scp>MBD</scp> 2_v2 expression promotes tumor‐initiating triple‐negative breast cancer stem cells
Cited by: 23
Author(s): Emily A. Teslow, Cristina Mitrea, Bin Bao, Ramzi M. Mohammad, Lisa Polin, Greg Dyson, Kristen Purrington, Aliccia Bollig‐Fischer
Software Mentions: 1
Published: over 7 years ago

10.1002/1878-0261.12711

Retracted: Long non‐coding RNA PGM5‐AS1 promotes epithelial‐mesenchymal transition, invasion and metastasis of osteosarcoma cells by impairing miR‐140‐5p‐mediated FBN1 inhibition
Cited by: 25
Author(s): Wei Liu, Pengcheng Liu, Hang Gao, Xu Wang, Mingxia Yan
Software Mentions: 1
Published: about 6 years ago

10.1002/1878-0261.12834

A novel prognostic model based on four circulating miRNA in diffuse large B‐cell lymphoma: implications for the roles of MDSC and Th17 cells in lymphoma progression
Cited by: 20
Author(s): Rui Sun, Zhong Zheng, Li Wang, Shu Cheng, Qingqing Shi, Bin Qu, Di Fu, Christophe Lebœuf, Yan Zhao, Jing Ye, Anne Janin, Wei‐Li Zhao
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-72551-0

Identifying a nasal gene expression signature associated with hyperinflation and treatment response in severe COPD
Cited by: 2
Author(s): Alen Faiz, Kai Imkamp, Erica van der Wiel, Ilse M. Boudewijn, Gerard H. Koppelman, Corry‐Anke Brandsma, Huib A. M. Kerstjens, Wim Timens, Sebastiaan J. Vroegop, Henk Pasma, Wim Boersma, Pascal Wielders, Frank van den Elshout, Khaled Mansour, Katrina Steiling, Avrum Spira, Marc E. Lenburg, Irene H. Heijink, Dirkje S. Postma, Maarten van den Berge
Software Mentions: 1
Published: almost 6 years ago

10.1002/1878-0261.12639

Metabolism‐associated molecular classification of hepatocellular carcinoma
Cited by: 115
Author(s): Chen Yang, Xiaowen Huang, Zhicheng Liu, Wenxin Qin, Cun Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/1710-1492-10-32

Th17/Treg ratio derived using DNA methylation analysis is associated with the late phase asthmatic response
Cited by: 28
Author(s): Amrit Singh, Masatsugu Yamamoto, Jian Ruan, Jung‐Hye Choi, Gail M. Gauvreau, Sven Olek, Ulrich Hoffmueller, Christopher Carlsten, J. Mark FitzGerald, Louis‐Philippe Boulet, Paul M. O'Byrne, Scott J. Tebbutt
Software Mentions: 1
Published: about 12 years ago

10.1002/1878-0261.12738

Blood‐derived DNA methylation predictors of mortality discriminate tumor and healthy tissue in multiple organs
Cited by: 6
Author(s): Yan Zhang, Melanie Bewerunge-Hudler, Matthias Schick, Barbara Burwinkel, Esther Herpel, Michael Hoffmeister, Hermann Brenner
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.14004

Establishment and application of a novel patient-derived KIAA1549:BRAF-driven pediatric pilocytic astrocytoma model for preclinical drug testing
Cited by: 38
Author(s): Florian Selt, Juliane Hohloch, Thomas Hielscher, Felix Sahm, David Capper, Andrey Korshunov, Diren Usta, Sebastian Brabetz, Johannes Ridinger, Jonas Ecker, Ina Oehme, Jan Gronych, Viktoria Marquardt, David Pauck, Heidi Bächli, Charles D. Stiles, Andreas von Deimling, Marc Remke, Martin U. Schuhmann, Stefan M. Pfister, Tilman Brummer, David Jones, Olaf Witt, Till Milde
Software Mentions: 1
Published: over 9 years ago

10.1002/1878-0261.12424

Circular <scp>RNA</scp> profiling identifies circ <scp>ADAMTS</scp> 13 as a miR‐484 sponge which suppresses cell proliferation in hepatocellular carcinoma
Cited by: 83
Author(s): Liman Qiu, Yong Huang, Zhenli Li, Xiaoli Dong, Chen Geng, Haipo Xu, Yongyi Zeng, Zhixiong Cai, Xiaolong Liu, Jingfeng Liu
Software Mentions: 1
Published: over 7 years ago

10.1002/1878-0261.12668

Improved prognostication of glioblastoma beyond molecular subtyping by transcriptional profiling of the tumor microenvironment
Cited by: 15
Author(s): M. Jeanmougin, Annette Bentsen Håvik, Lina Cekaite, Petter Brandal, Anita Sveen, Torstein R. Meling, Trude H. Ågesen, David Scheie, Sverre Heim, Ragnhild Lothe, Guro Elisabeth Lind
Software Mentions: 1
Published: over 6 years ago

10.1002/1878-0261.12640

CCL5 mediates target‐kinase independent resistance to FLT3 inhibitors in FLT3‐ITD‐positive AML
Cited by: 14
Author(s): Silvia Waldeck, Michael Rassner, Philip Keye, Marie Follo, Dieter Herchenbach, Cornelia Endres, Anne Charlet, Geoffroy Andrieux, Ulrich Salzer, Melanie Boerries, Justus Duyster, Nikolas von Bubnoff
Software Mentions: 1
Published: over 6 years ago

10.1186/1750-1326-9-26

Gene expression changes consistent with neuroAIDS and impaired working memory in HIV-1 transgenic rats
Cited by: 55
Author(s): Vez Repunte‐Canonigo, Céline Lefèbvre, Olivier George, Tatsuyuki Kawamura, Marisela Morales, George F. Koob, Andrea Califano, Eliezer Masliah, Pietro Paolo Sanna
Software Mentions: 1
Published: about 12 years ago

10.1186/1750-1326-8-47

Behavioral and transcriptome alterations in male and female mice with postnatal deletion of TrkB in dorsal striatal medium spiny neurons
Cited by: 11
Author(s): Ellen M. Unterwald, Michelle E. Page, Timothy Brown, Jonathan S. Miller, Marta Ruiz, Karen A. Pescatore, Baoji Xu, Louis F. Reichardt, Joel A. Beverley, Bin Tang, Heinz Steiner, Elizabeth A. Thomas, Michelle E. Ehrlich
Software Mentions: 1
Published: almost 13 years ago

10.1186/s13024-018-0259-3

Large-scale transcriptomic analysis reveals that pridopidine reverses aberrant gene expression and activates neuroprotective pathways in the YAC128 HD mouse
Cited by: 25
Author(s): Rebecca Kusko, Jennifer Dreymann, Jeffrey Ross, Yoon Jin, Renan Escalante-Chong, Marta Garcia-Miralles, Liang Juin Tan, Michael E. Burczynski, Ben Zeskind, Daphna Laifenfeld, Mahmoud A. Pouladi, Michal Geva, Iris Grossman, Michael R. Hayden
Software Mentions: 1
Published: over 8 years ago

10.1186/s13024-021-00441-8

Preclinical modeling of chronic inhibition of the Parkinson’s disease associated kinase LRRK2 reveals altered function of the endolysosomal system in vivo
Cited by: 25
Author(s): Jillian H. Kluss, Melissa Conti Mazza, Yan Li, Claudia Manzoni, Patrick A. Lewis, Mark Cookson, Adamantios Mamais
Software Mentions: 1
Published: over 5 years ago

10.1186/1750-1326-4-49

Vascular endothelial growth factor B (VEGF-B) is up-regulated and exogenous VEGF-B is neuroprotective in a culture model of Parkinson's disease
Cited by: 56
Author(s): Torsten Falk, Shiling Zhang, Scott J. Sherman
Software Mentions: 1
Published: over 17 years ago

10.18632/aging.102765

Testicular biopsies microarray analysis reveals circRNAs are involved in the pathogenesis of non-obstructive azoospermia
Cited by: 8
Author(s): Hao Bo, Zhizhong Liu, Ruiling Tang, Guanghui Gong, Xingming Wang, Han Zhang, Fang Zhu, Dai Zhou, Wenbing Zhu, Yue‐Qiu Tan, Liqing Fan
Software Mentions: 1
Published: over 6 years ago

10.1007/s12035-019-1627-x

Circular RNAs as Potential Blood Biomarkers in Amyotrophic Lateral Sclerosis
Cited by: 40
Author(s): Ana Dolinar, Blaž Koritnik, Damjan Glavač, Metka Ravnik‐Glavač
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-77732-5

Spontaneous intake of essential oils after a negative postnatal experience has long-term effects on blood transcriptome in chickens
Cited by: 6
Author(s): Aline Foury, Anne Collin, Jean‐Christophe Helbling, Christine Leterrier, Marie‐Pierre Moisan, Laurence Guilloteau
Software Mentions: 1
Published: almost 6 years ago

10.1007/s12035-016-0334-0

Humoral Immunity Profiling of Subjects with Myalgic Encephalomyelitis Using a Random Peptide Microarray Differentiates Cases from Controls with High Specificity and Sensitivity
Cited by: 17
Author(s): Sahajpreet Singh, Phillip Stafford, Karen Schlauch, Richard R. Tillett, Martin Gollery, Stephen Albert Johnston, Svetlana F. Khaiboullina, Kenny L. De Meirleir, Shanti Rawat, Tatjana Mijatovic, Krishnamurthy Subramanian, András Palotás, Vincent Lombardi
Software Mentions: 1
Published: almost 10 years ago

10.1007/s12035-020-02189-6

Constitutive PGC-1α Overexpression in Skeletal Muscle Does Not Contribute to Exercise-Induced Neurogenesis
Cited by: 7
Author(s): Lars Karlsson, María Nazareth González-Alvarado, Reza Motalleb, Yafeng Wang, Yong Wang, Mats Börjesson, Changlian Zhu, H. Georg Kuhn
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-78207-3

Maternal proteomic profiling reveals alterations in lipid metabolism in late-onset fetal growth restriction
Cited by: 9
Author(s): Cristina Paulés, L. Youssef, J. Miranda, F. Crovetto, Josep Marı́a Estanyol, Guerau Fernández, F. Crispi, E. Gratacós
Software Mentions: 1
Published: almost 6 years ago

10.1111/j.1365-2958.2012.08192.x

Identification of a complex genetic network underlying <scp>S</scp>accharomyces cerevisiae colony morphology
Cited by: 60
Author(s): Karin Voordeckers, Dries De Maeyer, Elisa van der Zande, Marcelo D. Vinces, Wim Meert, Lore Cloots, Owen Ryan, Kathleen Marchal, Kevin J. Verstrepen
Software Mentions: 1
Published: about 14 years ago

10.18632/oncotarget.14856

Integrative computational analysis of transcriptional and epigenetic alterations implicates DTX1 as a putative tumor suppressor gene in HNSCC
Cited by: 15
Author(s): Daria A. Gaykalova, Veronika Žižková, Theresa Guo, Ilse Tiscareno, Yingying Wei, Rajita Vatapalli, Patrick Hennessey, Julie Ahn, Ludmila Danilova, Zubair Khan, Justin A. Bishop, J. Silvio Gutkind, Wayne M. Koch, William H. Westra, Elana J. Fertig, Michael F. Ochs, Joseph A. Califano
Software Mentions: 1
Published: over 9 years ago

10.1111/mmi.13460

Phytohormone sensing in the biotrophic fungusUstilago maydis– the dual role of the transcription factor Rss1
Cited by: 14
Author(s): Franziska Rabe, Denise Seitner, Lisa Bauer, Fernando Navarrete, Angelika Czedik‐Eysenberg, Fernando A. Rabanal, Armin Djamei
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.12576

Reduced PAK1 activity sensitizes FA/BRCA-proficient breast cancer cells to PARP inhibition
Cited by: 13
Author(s): Olga Villamar-Cruz, Tatiana Y. Prudnikova, Daniela Araiza‐Olivera, Carlos Pérez‐Plasencia, Neil Johnson, Andrea J. Bernhardy, Michael Slifker, Catherine Renner, Jonathan Chernoff, Luis E. Arias-Romero
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.molmet.2020.100997

Hepatic expression of lipopolysaccharide-binding protein (Lbp) is induced by the gut microbiota through Myd88 and impairs glucose tolerance in mice independent of obesity
Cited by: 10
Author(s): Antonio Molinaro, Ara Koh, Hao Wu, Marc Schoeler, Maria Ilaria Faggi, Alba Carreras, Anna Hallén, Fredrik Bäckhed, Robert Caesar
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.12527

IKKα regulates the stratification and differentiation of the epidermis: implications for skin cancer development
Cited by: 12
Author(s): Josefa P. Alameda, Manuel Navarro, Ángel Ramı́rez, Angustias Page, Cristian Suárez-Cabrera, Rodolfo Moreno-Maldonado, Jesús M. Paramio, María del Carmen Fariña, Marcela Del Río, María Jesús Fernández-Aceñero, Ana Bravo, Mercedes Casanova
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-020-79598-z

Blocking PDGF-CC signaling ameliorates multiple sclerosis-like neuroinflammation by inhibiting disruption of the blood–brain barrier
Cited by: 13
Author(s): Manuel Zeitelhofer, Milena Z. Adzemovic, Christine Moessinger, Christina Stefanitsch, Carina Strell, Lars Muhl, Lou Brundin, Linda Fredriksson, Tomas Olsson, Ulf Eriksson, Ingrid Nilsson
Software Mentions: 1
Published: over 5 years ago

10.1111/all.14016

Blood eosinophil count and airway epithelial transcriptome relationships in COPD versus asthma
Cited by: 31
Author(s): Lauren George, Adam Taylor, Anna Esteve‐Codina, María Soler Artigas, Gian Andri Thun, Stewart Bates, Stelios Pavlidis, Scott Wagers, Anne Boland, Antje Prasse, Pierà Boschetto, David Parr, Adam Nowiński, Imre Barta, Jens M. Hohlfeld, Timm Greulich, Maarten van den Berge, Pieter S. Hiemstra, Wim Timens, Timothy S C Hinks, Sally E. Wenzel, Salman Siddiqui, Matthew Richardson, Per Venge, Simon Heath, Marta Gut, Martin D. Tobin, Lindsay J. Edwards, John Riley, Ratko Djukanović, Charles Auffray, Bertrand DeMeulder, Sven Erik-Dahlen, Ian M. Adcock, Kian Fan Chung, Loems Ziegler-Heitbrock, Peter J. Sterk, Dave Singh, Christopher E. Brightling
Software Mentions: 1
Published: about 7 years ago

10.3892/mmr.2015.3565

Identification of therapeutic targets for breast cancer using biological informatics methods
Cited by: 13
Author(s): Xuejian Liu, Yue Ma, Wenchuan Yang, Xia Wu, Lihua Jiang, Xiangli Chen
Software Mentions: 1
Published: over 11 years ago

10.3892/mmr.2015.3701

Gene expression profiling via bioinformatics analysis reveals biomarkers in laryngeal squamous cell carcinoma
Cited by: 7
Author(s): Guofang Guan, Ying Zheng, Lianji Wen, Dejun Zhang, Duo‐Jiao Yu, Yan-qing Lu, Zhao Yan, Hui Zhang
Software Mentions: 1
Published: over 11 years ago

10.3892/mmr.2015.3277

Screening and functional pathway analysis of genes associated with pediatric allergic asthma using a DNA microarray
Cited by: 9
Author(s): Liqun Lu, Wei Liao
Software Mentions: 1
Published: over 11 years ago

10.3892/mmr.2014.2137

Module-based functional pathway enrichment analysis of a protein-protein interaction network to study the effects of intestinal microbiota depletion in mice
Cited by: 6
Author(s): Zhiying Jia, Yang Xia, Danian Tong, Jing Yao, Hongqi Chen, Jun Yang
Software Mentions: 1
Published: over 12 years ago

10.3892/mmr.2014.2756

Neuronal calcium signaling pathways are associated with the development of epilepsy
Cited by: 14
Author(s): Fanjuan Meng, Yu You, Zhiliang Liu, Jianming Liu, Hu Ding, Ran Xu
Software Mentions: 1
Published: almost 12 years ago

10.1186/bcr2593

Dynamic changes in gene expression in vivo predict prognosis of tamoxifen-treated patients with breast cancer
Cited by: 39
Author(s): Karen Taylor, Andrew H. Sims, Liang Liang, Dana Faratian, Morwenna Muir, Graeme E. Walker, Barbara Kuske, J. M. Dixon, David Cameron, David J. Harrison, Simon P. Langdon
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-020-79611-5

Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance
Cited by: 8
Author(s): Jan Félix, Claire Siebert, Julia Novion Ducassou, Jérôme Nigou, Pierre Garcia, Angélique Fraudeau, Karine Huard, Caroline Mas, Céline Brochier-Armanet, Yohann Couté, Irina Gutsche, Patricia Renesto
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.14836

Multiple functional SNPs in differentially expressed genes modify risk and survival of non-small cell lung cancer in chinese female non-smokers
Cited by: 14
Author(s): Xue Fang, Zhihua Yin, Xuelian Li, Lingzi Xia, Xiaowei Quan, Yang Zhao, Baosen Zhou
Software Mentions: 1
Published: over 9 years ago

10.14336/AD.2020.1112

Prediction of SARS-CoV Interaction with Host Proteins during Lung Aging Reveals a Potential Role for TRIB3 in COVID-19
Cited by: 9
Author(s): Diogo de Moraes, Brunno Vivone Buquete Paiva, Sarah Santiloni Cury, Raissa G. Ludwig, João Pessoa Araújo, Marcelo A. Mori, Robson Francisco Carvalho
Software Mentions: 1
Published: over 5 years ago

10.1186/s13058-015-0668-y

Targeted Pten deletion plus p53-R270H mutation in mouse mammary epithelium induces aggressive claudin-low and basal-like breast cancer
Cited by: 21
Author(s): Sharon Wang, Jeff C. Liu, Danbi Kim, Alessandro Datti, Eldad Zacksenhaus
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.15662

PIF* promotes brain re-myelination locally while regulating systemic inflammation- clinically relevant multiple sclerosis M.smegmatis model
Cited by: 17
Author(s): Giuseppe Migliara, Martin Mueller, Alessia Piermattei, Chaya Brodie, Michael J. Paidas, Eytan R. Barnea, Francesco Ria
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.6379

Different prognostic impact ofSTK11mutations in non-squamous non-small-cell lung cancer
Cited by: 59
Author(s): Nicolas Pécuchet, Pierre Laurent‐Puig, Audrey Lupo, Antoine Legras, Marco Alifano, Karine Pallier, Audrey Didelot, Laure Gibault, Claire Danel, Pierre‐Alexandre Just, Marc Riquet, Françoise Le Pimpec-Barthes, Diane Damotte, Elizabeth Fabre, Hélène Blons
Software Mentions: 1
Published: almost 11 years ago

10.1186/bcr2560

Transcriptome analyses of mouse and human mammary cell subpopulations reveal multiple conserved genes and pathways
Cited by: 357
Author(s): Elgene Lim, Di Wu, Bhupinder Pal, Toula Bouras, Marie Liesse Asselin-Labat, François Vaillant, Hideo Yagita, Geoffrey J. Lindeman, Gordon K. Smyth, Jane E. Visvader
Software Mentions: 1
Published: over 16 years ago

10.1021/acschemneuro.1c00303

Wide-Ranging Effects on the Brain Proteome in a Transgenic Mouse Model of Alzheimer’s Disease Following Treatment with a Brain-Targeting Somatostatin Peptide
Cited by: 10
Author(s): Fadi Rofo, Friederike Andrea Sandbaumhüter, Aikaterini Chourlia, Nicole G. Metzendorf, Jamie I. Morrison, Stina Syvänen, Per E. Andrén, Erik T. Jansson, Greta Hultqvist
Software Mentions: 1
Published: about 5 years ago

10.1186/s13058-017-0861-2

The BRCA1ness signature is associated significantly with response to PARP inhibitor treatment versus control in the I-SPY 2 randomized neoadjuvant setting
Cited by: 57
Author(s): Tesa Severson, Denise M. Wolf, Christina Yau, Justine K. Peeters, Diederik Wehkam, Philip C. Schouten, Suet-Feung Chin, Ian J. Majewski, Magali Michaut, Astrid Bosma, Bernard Pereira, Tycho Bismeijer, Lodewyk Wessels, Carlos Caldas, René Bernards, Iris Simón, Annuska M. Glas, Sabine C. Linn, Laura J. van’t Veer
Software Mentions: 1
Published: about 9 years ago

10.1186/s13058-014-0437-3

Profiling the tyrosine phosphoproteome of different mouse mammary tumour models reveals distinct, model-specific signalling networks and conserved oncogenic pathways
Cited by: 13
Author(s): Naveid Ali, Jianmin Wu, Falko Hochgräfe, Howard Chan, Radhika Nair, Sunny Ye, Luxi Zhang, Ruth J. Lyons, Mark Pinese, Hong Ching Lee, Nicola J. Armstrong, Christopher J. Ormandy, Susan J. Clark, Alexander Swarbrick, Roger J. Daly
Software Mentions: 1
Published: about 12 years ago

10.1186/s13058-016-0717-1

Germline APOBEC3B deletion is associated with breast cancer risk in an Asian multi-ethnic cohort and with immune cell presentation
Cited by: 43
Author(s): Wei Wen, Jaslyn Sian-Siu Soo, Pui Yoke Kwan, Elaine Hong, Tsung Fei Khang, Shivaani Mariapun, Christine Shu Mei Lee, Siti Norhidayu Hasan, Pathmanathan Rajadurai, Cheng Har Yip, Nur Aishah Mohd Taib, Soo Hwang Teo
Software Mentions: 1
Published: over 10 years ago

10.1186/bcr3673

Mesenchymal precursor cells maintain the differentiation and proliferation potentials of breast epithelial cells
Cited by: 18
Author(s): Stephan Duss, Heike Brinkhaus, Adrian Britschgi, Erik Cabuy, Daniel M. Frey, Dirk J. Schaefer, Mohamed Bentires‐Alj
Software Mentions: 1
Published: over 12 years ago

10.1186/s13058-015-0646-4

Puberty-specific promotion of mammary tumorigenesis by a high animal fat diet
Cited by: 22
Author(s): Mark D. Aupperlee, Yong Zhao, Ying Tan, Yuanchang Zhu, Ingeborg M. Langohr, Erin L. Kirk, Jason R. Pirone, Melissa A. Troester, Richard C. Schwartz, Sandra Z. Haslam
Software Mentions: 1
Published: almost 11 years ago

10.18632/oncotarget.15401

The long noncoding RNA, treRNA, decreases DNA damage and is associated with poor response to chemotherapy in chronic lymphocytic leukemia
Cited by: 22
Author(s): Cecelia Miller, Amy S. Ruppert, Sydney Fobare, Timothy L. Chen, Chaomei Liu, Amy Lehman, James S. Blachly, Xiaoli Zhang, David M. Lucas, Michael R. Grever, Martin S. Tallman, Ian W. Flinn, Laura Z. Rassenti, Thomas J. Kipps, Deepa Sampath, Kevin R. Coombes, Erin Hertlein
Software Mentions: 1
Published: over 9 years ago

10.1186/s40478-015-0211-5

Identification of targets for rational pharmacological therapy in childhood craniopharyngioma
Cited by: 84
Author(s): Jacob M. Gump, Andrew M. Donson, Diane K. Birks, Vladimir Amani, Karun K. Rao, Andrea Griesinger, B. K. Kleinschmidt-DeMasters, James M. Johnston, Richard C. E. Anderson, Amy Rosenfeld, Michael H. Handler, Lia Gore, Nicholas K. Foreman, Todd C. Hankinson
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-021-83138-8

MUTYH is associated with hepatocarcinogenesis in a non-alcoholic steatohepatitis mouse model
Cited by: 4
Author(s): Hiroki Sakamoto, Koji Miyanishi, Shingo Tanaka, Ryo Itô, Kota Hamaguchi, Akira Sakurada, Masanori Sato, Tomohiro Kubo, Takahiro Osuga, Kazuyuki Murase, Kohichi Takada, Yusaku Nakabeppu, Masayoshi Kobune, Junji Kato
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-83591-5

CSF proteome in multiple sclerosis subtypes related to brain lesion transcriptomes
Cited by: 7
Author(s): Maria L. Elkjaer, Arkadiusz Nawrocki, Tim Kacprowski, Pernille Lassen, Anja Hviid Simonsen, Romain Marignier, Tobias Sejbæk, Helle Hvilsted Nielsen, Lene Wermuth, Alyaa Yakut Rashid, Peter Høgh, Finn Sellebjerg, Richard Reynolds, Jan Baumbach, Martin R. Larsen, Zsolt Illés
Software Mentions: 1
Published: over 5 years ago

10.1111/acel.13213

SS‐31 and NMN: Two paths to improve metabolism and function in aged hearts
Cited by: 33
Author(s): Jeremy Whitson, Alessandro Bitto, Huiliang Zhang, Mariya T. Sweetwyne, Rene Coig, Saakshi Bhayana, Eric G. Shankland, Lu Wang, Theo K. Bammler, Kathryn F. Mills, Shoichi Imai, Kevin E. Conley, David J. Marcinek, Peter S. Rabinovitch
Software Mentions: 1
Published: about 6 years ago

10.1111/acel.12174

Combined administration of testosterone plus an ornithine decarboxylase inhibitor as a selective prostate‐sparing anabolic therapy
Cited by: 13
Author(s): Ravi Jasuja, James C. Costello, Rajan Singh, Vandana Gupta, Catherine S. Spina, Gianluca Toraldo, Hyeran Jang, Hu Li, Carlo Serra, Wen Guo, Pratibha Chauhan, Navjot S. Narula, Tyler Guarneri, Ayla Ergün, Thomas G. Travison, James J. Collins, Shalender Bhasin
Software Mentions: 1
Published: almost 13 years ago

10.1111/acel.12745

Molecular profiling of aged neural progenitors identifies Dbx2 as a candidate regulator of age-associated neurogenic decline
Cited by: 27
Author(s): Giuseppe Lupo, Paola S. Nisi, Pilar Esteve, Yu-Lee Paul, Clara Lopes Novo, Ben S. Sidders, Muhammad Amir Khan, Stefano Biagioni, Hai-Kun Liu, Paola Bovolenta, Emanuele Cacci, Peter J. Rugg‐Gunn
Software Mentions: 1
Published: over 8 years ago

10.1111/acel.12229

Gene profiling reveals association between altered Wnt signaling and loss of T-cell potential with age in human hematopoietic stem cells
Cited by: 13
Author(s): Melissa Khoo, Stephen M. Carlin, Mark Lutherborrow, Vivek Jayaswal, D. F. David, John J. Moore
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-021-82834-9

LINC00665 promotes the progression of acute myeloid leukemia by regulating the miR-4458/DOCK1 pathway
Cited by: 10
Author(s): Xiaoyu Yang, Yan Wang, Sulei Pang, Xiaojie Li, Panpan Wang, Ruojin Ma, Yunyun Ma, Chunge Song
Software Mentions: 1
Published: over 5 years ago

10.1186/bcr3460

Pharmacologic reversion of epigenetic silencing of the PRKD1promoter blocks breast tumor cell invasion and metastasis
Cited by: 76
Author(s): Sahra Borgés, Heike Döppler, Edith A. Perez, Cathy A. Andorfer, Zhifu Sun, Panos Z. Anastasiadis, E. Aubrey Thompson, Xochiquetzal J. Geiger, Peter Störz
Software Mentions: 1
Published: over 13 years ago

10.18632/oncotarget.16646

Serotonergic system antagonists target breast tumor initiating cells and synergize with chemotherapy to shrink human breast tumor xenografts
Cited by: 33
Author(s): William D. Gwynne, Robin Hallett, Adele Girgis-Gabardo, Bojana Bojović, Anna Dvorkin‐Gheva, Craig Aarts, Kay Dias, Anita Bane, John A. Hassell
Software Mentions: 1
Published: over 9 years ago

10.1186/bcr1834

Regulator of G-protein signalling 2 mRNA is differentially expressed in mammary epithelial subpopulations and over-expressed in the majority of breast cancers
Cited by: 27
Author(s): Matthew J. Smalley, Marjan Iravani, Maria Ignêz Leão, Anita Grigoriadis, Howard Kendrick, Tim Dexter, Kerry Fenwick, Joseph L. Regan, Kara Britt, Sarah McDonald, Christopher J. Lord, Alan Mackay, Alan Ashworth
Software Mentions: 1
Published: almost 19 years ago

10.1186/bcr2222

Gene expression profiling of the tumor microenvironment during breast cancer progression
Cited by: 550
Author(s): Xiao‐Jun Ma, Sonika Dahiya, Elizabeth Richardson, Mark G. Erlander, Dennis Sgroi
Software Mentions: 1
Published: over 17 years ago

10.1186/s13058-020-01359-7

Activating transcription factor-2 (ATF2) is a key determinant of resistance to endocrine treatment in an in vitro model of breast cancer
Cited by: 13
Author(s): Athina Giannoudis, Mohammed Imad Malki, Bharath Rudraraju, Hisham Mohhamed, Suraj Menon, Triantafillos Liloglou, Simak Ali, Jason S. Carroll, Carlo Palmieri
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-85044-5

Integrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome
Cited by: 4
Author(s): Robert E. Moore, Bhanwar Lal Puniya, Robert Powers, Chittibabu Guda, Kenneth W. Bayles, David B. Berkowitz, Tomáš Helikar
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-84612-z

Validation of a multicellular tumor microenvironment system for modeling patient tumor biology and drug response
Cited by: 4
Author(s): Devin G. Roller, Stephen A. Hoang, Kristopher D. Rawls, Katherine A. Owen, Michael B. Simmers, Robert A. Figler, Julia Wulfkuhle, Emanuel F. Petricoin, Brian R. Wamhoff, Daniel Gioeli
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.16521

Metallothionein 1M suppresses tumorigenesis in hepatocellular carcinoma
Cited by: 13
Author(s): Chenglin Fu, Bing Pan, Juhua Pan, Meifu Gan
Software Mentions: 1
Published: over 9 years ago

Projects: bioconductor: limma

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Papers Mentioning limma 7,776