Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: limma

https://packages.ecosyste.ms/registries/bioconductor.org/packages/limma

Linear Models for Microarray Data
3 versions
Latest release: about 1 year ago
314 dependent packages
4,663,292 downloads total

Papers Mentioning limma 7,776

10.1007/s10549-018-4920-x
Co-expressed genes enhance precision of receptor status identification in breast cancer patients
Cited by: 7
Author(s): Michael Kenn, Dan Cacsire Castillo‐Tong, Christian F. Singer, Michael Cibena, H. Kölbl, Wolfgang Schreiner
Software Mentions: 1
Published: over 6 years ago
10.1038/srep20864
Selective inhibition of EZH2 by ZLD1039 blocks H3K27methylation and leads to potent anti-tumor activity in breast cancer
Cited by: 45
Author(s): Xian‐Rong Song, Tiantao Gao, Ningyu Wang, Qiang Feng, Xinyu You, Tinghong Ye, Qian Lei, Yiping Zhu, Menghua Xiong, Yong Xia, Fangfang Yang, Yu Shi, Yuquan Wei, Lidan Zhang, Luoting Yu
Software Mentions: 1
Published: almost 9 years ago
10.1186/1746-6148-9-138
Five markers useful for the distinction of canine mammary malignancy
Cited by: 12
Author(s): Karol Pawłowski, Henryk Maciejewski, Kinga Majchrzak, I. Dolka, Jan A. Mol, T. Motyl, Magdalena Król
Software Mentions: 1
Published: over 11 years ago
10.1186/s12866-019-1684-3
Temporal analysis of mRNA expression profiles in Orientia infected C3HeB/FeJ mouse
Cited by: 3
Author(s): Chien‐Chung Chao, Ruoting Yang, Zhiwen Zhang, Tatyana Belinskaya, Chye-Teik Chan, Stacy‐Ann Miller, Rasha Hammamieh, Marti Jett, Wei‐Mei Ching
Software Mentions: 1
Published: almost 5 years ago
10.1186/1746-6148-8-35
The gene expression profiles of canine mammary cancer cells grown with carcinoma-associated fibroblasts (CAFs) as a co-culture in vitro
Cited by: 19
Author(s): Magdalena Król, Karol Pawłowski, K. Szyszko, Henryk Maciejewski, I. Dolka, Elisabetta Manuali, Michał Jank, T. Motyl
Software Mentions: 1
Published: almost 13 years ago
10.1038/s41598-019-47246-w
GRP78 translocation to the cell surface and O-GlcNAcylation of VE-Cadherin contribute to ER stress-mediated endothelial permeability
Cited by: 23
Author(s): Raji Rajesh Lenin, Peter G. Nagy, Kumar Abhiram Jha, Rajashekhar Gangaraju
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-47245-x
Global view of the RAF-MEK-ERK module and its immediate downstream effectors
Cited by: 10
Author(s): Cristina Costa Santini, James Longden, Erwin M. Schoof, Simpson Cd, Grace R. Jeschke, Pau Creixell, Jinho Kim, Xuewei Wu, Benjamin E. Turk, Neal Rosen, Poulikos I. Poulikakos, Rune Linding
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-47581-y
Effect of immunosuppression in miRNAs from extracellular vesicles of colorectal cancer and their influence on the pre-metastatic niche
Cited by: 11
Author(s): Valeria Tubita, Joan Seguí-Barber, Juan José Lozano, Elisenda Bañón-Maneus, Jordi Rovira, David Cucchiari, Daniel Moya-Rull, Federico Oppenheimer, Hernando del Portillo, Josep M. Campistol, Fritz Diekmann, María José Ramírez-Bajo, Ignacio Revuelta
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-47774-5
Comprehensive Proteomic Analysis Reveals Intermediate Stage of Non-Lesional Psoriatic Skin and Points out the Importance of Proteins Outside this Trend
Cited by: 23
Author(s): Edit Szél, Renáta Bozó, Éva Hunyadi‐Gulyás, Máté Manczinger, Kornélia Szabó, Lajos Kemény, Zsuzsanna Bata‐Csörgő, Gergely Groma
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-48276-0
Sinus node-like pacemaker mechanisms regulate ectopic pacemaker activity in the adult rat atrioventricular ring
Cited by: 10
Author(s): Sunil Jit R. J. Logantha, Sanjay Kharche, Y. Zhang, Andrew Atkinson, Guoliang Hao, Mark R. Boyett, Halina Dobrzynski
Software Mentions: 1
Published: over 5 years ago
10.1186/1746-6148-9-78
Gene expression profiles in canine mammary carcinomas of various grades of malignancy
Cited by: 13
Author(s): Karol Pawłowski, Henryk Maciejewski, I. Dolka, Jan A. Mol, T. Motyl, Magdalena Król
Software Mentions: 1
Published: over 11 years ago
10.1186/s12894-021-00857-w
Exploring microRNA target genes and identifying hub genes in bladder cancer based on bioinformatic analysis
Cited by: 3
Author(s): Hongjian Wu, Wubing Jiang, Guanghua Ji, Rong Xu, Gaobo Zhou, Hongyuan Yu
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-019-48816-8
Transcriptomic and functional analyses of 3D placental extravillous trophoblast spheroids
Cited by: 16
Author(s): Michael K. Wong, Mishquatul Wahed, Sarah A. Shawky, Anna Dvorkin‐Gheva, Sandeep Raha
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-52682-9
The intrinsic circadian clock in podocytes controls glomerular filtration rate
Cited by: 22
Author(s): Camille Ansermet, Gabriel Centeno, Svetlana Nikolaeva, Marc Maillard, Sylvain Pradervand, Dmitri Firsov
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-52886-z
Identification of candidate cancer drivers by integrative Epi-DNA and Gene Expression (iEDGE) data analysis
Cited by: 4
Author(s): Amy Li, Bjoern Chapuy, Xaralabos Varelas, Paola Sebastiani, Stefano Monti
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-53482-x
Late recurrence of breast cancer is associated with pro-cancerous immune microenvironment in the primary tumor
Cited by: 43
Author(s): Takashi Terauchi, Li Yan, Mariko Asaoka, Omar M. Rashid, Kazuaki Takabe
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-54036-x
Bone marrow adipose tissue does not express UCP1 during development or adrenergic-induced remodeling
Cited by: 20
Author(s): Clarissa S. Craft, Hero Robles, Madelyn R. Lorenz, Eric D. Hilker, Kristann Magee, Thomas Levin Andersen, William P. Cawthorn, Ormond A. MacDougald, Charles Harris, Erica L. Scheller
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-53907-7
FGF Signalling in the Self-Renewal of Colon Cancer Organoids
Cited by: 28
Author(s): Jörg Otte, Levent Dizdar, Bianca Behrens, Wolfgang Goering, Wolfram Trudo Knoefel, Wasco Wruck, Nikolas H. Stoecklein, James Adjaye
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-54868-7
Novel Bead-Based Epitope Assay is a sensitive and reliable tool for profiling epitope-specific antibody repertoire in food allergy
Cited by: 35
Author(s): Maria Suprun, Robert C. Getts, Rohit Raghunathan, Galina Grishina, Marc Witmer, Gustavo Giménez, Hugh A. Sampson, Mayte Suárez‐Fariñas
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-019-55287-4
TRANSNAP: a web database providing comprehensive information on Japanese pear transcriptome
Cited by: 8
Author(s): Shizuka Koshimizu, Yoshitomo Nakamura, Chikako Nishitani, Mariko Kobayashi, Hajime Ohyanagi, Takatsugu Yamamoto, Kentarô Yano
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-019-55645-2
Bacillus amyloliquefaciens MBI600 differentially induces tomato defense signaling pathways depending on plant part and dose of application
Cited by: 36
Author(s): Anastasia Dimopoulou, Ioannis Theologidis, Burghard Liebmann, Kriton Kalantidis, Nikon Vassilakos, Nicholas Skandalis
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-019-57011-8
Regulation of Gdf5 expression in joint remodelling, repair and osteoarthritis
Cited by: 38
Author(s): Karolina Kania, Fabio Colella, Anna Helene Katrin Riemen, Hui Wang, Kenneth A. Howard, Thomas Aigner, Francesco Dell’Accio, Terence D. Capellini, Anke J. Roelofs, Cosimo De Bari
Software Mentions: 1
Published: almost 5 years ago
10.1186/1752-0509-7-69
Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice
Cited by: 17
Author(s): Nicolas Tchitchek, Amie J. Eisfeld, Jennifer Tisoncik-Go, Laurence Josset, Lisa E. Gralinski, Christophe Bécavin, Susan C. Tilton, Bobbie-Jo M. Webb-Robertson, Martin T. Ferris, Allison L. Totura, Chengjun Liu, Gabriele Neumann, Thomas O. Metz, Richard D. Smith, Katrina M. Waters, Ralph S. Baric, Yoshihiro Kawaoka, Michael G. Katze
Software Mentions: 1
Published: over 11 years ago
10.1038/s41598-019-57293-y
CD40L membrane retention enhances the immunostimulatory effects of CD40 ligation
Cited by: 13
Author(s): Taha Elmetwali, Asmaa Salman, Wenbin Wei, Syed A. Hussain, Lawrence S. Young, Daniel H. Palmer
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-57698-0
Silencing of SENP2 in Multiple Myeloma Induces Bortezomib Resistance by Activating NF-κB Through the Modulation of IκBα Sumoylation
Cited by: 15
Author(s): Hong-Yi Xie, Yuanliang Gu, Wenjuan Wang, Xuyao Wang, Xiaojuan Ye, Chao Xin, Mengjiao Lü, B. Ashok Reddy, Peng Shu
Software Mentions: 1
Published: almost 5 years ago
10.1186/1752-0509-4-68
Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation
Cited by: 9
Author(s): Subir Kumar Nandy, Paula Jouhten, Jens Nielsen
Software Mentions: 1
Published: over 14 years ago
10.1186/1752-0509-7-80
Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder
Cited by: 23
Author(s): Ruoting Yang, Bernie J. Daigle, Seid Muhie, Rasha Hammamieh, Marti Jett, Linda R. Petzold, Francis J. Doyle
Software Mentions: 1
Published: over 11 years ago
10.1038/s41598-020-58358-z
Stratifying cellular metabolism during weight loss: an interplay of metabolism, metabolic flexibility and inflammation
Cited by: 8
Author(s): Samar Tareen, Martina Kutmon, Theo M. de Kok, E.C.M. Mariman, Marleen A. van Baak, Chris T. Evelo, Michiel E. Adriaens, Ilja C. W. Arts
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-59577-0
Deducing signaling pathways from parallel actions of arsenite and antimonite in human epidermal keratinocytes
Cited by: 3
Author(s): Marjorie A. Phillips, Ángela Cánovas, Miguel A. Rea, Alma Islas–Trejo, Juan F. Medrano, Blythe Durbin‐Johnson, David M. Rocke, Robert H. Rice
Software Mentions: 1
Published: almost 5 years ago
10.1155/2017/2487297
2-Deoxy-D-glucose Restore Glucocorticoid Sensitivity in Acute Lymphoblastic Leukemia via Modification of N-Linked Glycosylation in an Oxygen Tension-Independent Manner
Cited by: 4
Author(s): Zaira Leni, Paulina Ćwiek, Valeriya Dimitrova, Andrea S. Dulcey, Nicola Zamboni, Cédric Simillion, Geetha Rossi, Kurt Leibundgut, Alexandre Arcaro
Software Mentions: 1
Published: almost 8 years ago
10.1155/2019/2510936
Diphenyl Ditelluride: Redox-Modulating and Antiproliferative Properties
Cited by: 5
Author(s): Cristiano Trindade, André Luiz Mendes Juchem, Temenouga Nikolova Guecheva, Iuri Marques de Oliveira, Priscila dos Santos Silveira, José Eduardo Vargas, Renato D Puga, Cláudia Pessoa, João Antônio Pêgas Henriques
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-020-60714-y
Identification of significant gene biomarkers of low back pain caused by changes in the osmotic pressure of nucleus pulposus cells
Cited by: 10
Author(s): Changsong Zhao, Xuemin Quan, Jie He, Rugang Zhao, Yao Zhang, Xin Li, Sheng Sun, Rui Ma, Qiang Zhang
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-60616-z
Integrated RNA and metabolite profiling of urine liquid biopsies for prostate cancer biomarker discovery
Cited by: 35
Author(s): Bongyong Lee, Iqbal Mahmud, John Marchica, Paweł Dereziński, Feng Qi, Fubo Wang, Piyush Joshi, Felipe Valerio, Inoel Rivera, Vipul Patel, Christian P. Pavlovich, Timothy J. Garrett, Gary P. Schroth, Yinghao Sun, Ranjan J. Perera
Software Mentions: 1
Published: over 4 years ago
10.1155/2020/7658921
Microarray Analysis of Small Extracellular Vesicle-Derived miRNAs Involved in Oxidative Stress of RPE Cells
Cited by: 4
Author(s): Ke Mao, Xiang Wu
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-60810-z
The role of semen and seminal plasma in inducing large-scale genomic changes in the female porcine peri-ovulatory tract
Cited by: 22
Author(s): Manuel Álvarez‐Rodríguez, Cristina A. Martínez, Dominic Wright, Heriberto Rodríguez-Martinez
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-62414-z
Transcriptomics in cancer revealed by Positron Emission Tomography radiomics
Cited by: 12
Author(s): Florent Tixier, Catherine Chèze-Le-Rest, Ulrike Schick, Brigitte Simon, Xavier Dufour, Stéphane Key, Olivier Pradier, Marc Aubry, Mathieu Hatt, Laurent Corcos, Dimitris Visvikis
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-63840-9
Construction and analysis for differentially expressed long non-coding RNAs and mRNAs in acute myocardial infarction
Cited by: 10
Author(s): Ning Song, Xiangmei Li, Junyi Luo, Hua‐Jin Zhai, Qian Zhao, Xinrong Zhou, Fen Liu, Xue-He Zhang, Xiao‐Ming Gao
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-63904-w
Gene expression profiles for low-dose exposure to diethyl phthalate in rodents and humans: a translational study with implications for breast carcinogenesis
Cited by: 18
Author(s): Kalpana Gopalakrishnan, Vasily N. Aushev, Fabiana Manservisi, Laura Falcioni, Simona Panzacchi, Fiorella Belpoggi, Humberto Parada, Gail Garbowski, Hanina Hibshoosh, Regina M. Santella, Marilie D. Gammon, Susan L. Teitelbaum, Jia Chen
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-64356-y
Comprehensive analysis of the SLC16A gene family in pancreatic cancer via integrated bioinformatics
Cited by: 36
Author(s): Shan Yu, Yanshuang Wu, Chunlong Li, Zhipeng Qu, Ge Lou, Xiaorong Guo, Jingjing Ji, Nan Li, Mian Guo, Maomao Zhang, Lei Lei, Sheng Tai
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-64524-0
Integration of whole-body [18F]FDG PET/MRI with non-targeted metabolomics can provide new insights on tissue-specific insulin resistance in type 2 diabetes
Cited by: 4
Author(s): Klev Diamanti, Robin Visvanathar, Maria J. Pereira, Marco Cavalli, Gang Pan, Chanchal Kumar, Stanko Skrtic, Ulf Risérus, Jan W. Eriksson, Joel Kullberg, Jan Komorowski, Claes Wadelius, Håkan Åhlström
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-65606-9
Bioinformatic analysis reveals the importance of epithelial-mesenchymal transition in the development of endometriosis
Cited by: 29
Author(s): Meihong Chen, Yilu Zhou, Hong Xu, Catherine M. Hill, Rob M. Ewing, Da He, Xiaoling Zhang, Yihua Wang
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-66122-6
Anaesthetic-dependent changes in gene expression following acute and chronic exposure in the rodent brain
Cited by: 20
Author(s): Dannielle Upton, Kata Popovic, Roger Fulton, Michael Kassiou
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-66872-3
Identification of core genes in the progression of endometrial cancer and cancer cell-derived exosomes by an integrative analysis
Cited by: 25
Author(s): Shuang Shi, Qiang Tan, Fuqiang Feng, Heping Huang, Jingjie Liang, Dingren Cao, Zhengguang Wang
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-66868-z
Distinct abdominal and gluteal adipose tissue transcriptome signatures are altered by exercise training in African women with obesity
Cited by: 14
Author(s): Pamela A. Nono Nankam, Matthias Blüher, Stephanie Kehr, Nora Klöting, Knut Krohn, Kevin Adams, Peter F. Stadler, Amy E. Mendham, Julia H. Goedecke
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-66221-4
Transcriptomic differences in MSA clinical variants
Cited by: 7
Author(s): Alexandra Pérez‐Soriano, Magdalena Arnal, Teresa Botta-Orfila, Darly M. Giraldo, Manel Fernández, Yaroslau Compta, Rubén Fernández‐Santiago, Mario Ezquerra, Gian Gaetano Tartaglia, Marı́a José Martı́, Esteban Muñoz, Javier Pagonabarraga, Francesc Valldeoriola, Jorge Hernández‐Vara, Serge Jauma Classen, Víctor Puente, Claustre Pont, Núria Caballol, Oriol de Fábregues, Asunción Ávila, Matilde Calopa, Carles Gaig, Pau Pástor, Montserrat Pujol, Joan Santamaría, Lluís Planellás, Ana Cámara
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-67550-0
A novel protective role for microRNA-3135b in Golgi apparatus fragmentation induced by chemotherapy via GOLPH3/AKT1/mTOR axis in colorectal cancer cells
Cited by: 21
Author(s): Stephanie I. Nuñez‐Olvera, Bibiana Chávez‐Munguía, María Cruz del Rocío Terrones-Gurrola, Laurence A. Marchat, Jonathan Puente-Rivera, Erika Ruiz‐García, Alma D. Campos‐Parra, Carlos Vázquez‐Calzada, Erik Lizárraga-Verdugo, Rosalío Ramos‐Payán, Yarely M. Salinas‐Vera, César López-Camarillo
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-67446-z
SnoRNA signatures in cartilage ageing and osteoarthritis
Cited by: 30
Author(s): Mandy J. Peffers, Alzbeta Chabronova, Panagiotis Balaskas, Yongxiang Fang, Philip Dyer, A. Cremers, Pieter J. Emans, Peter Z. Feczko, M.M. Caron, Tim J. M. Welting
Software Mentions: 1
Published: over 4 years ago
10.1155/2020/6634247
Development and Validation of a Nine-Redox-Related Long Noncoding RNA Signature in Renal Clear Cell Carcinoma
Cited by: 41
Author(s): Qi‐Dong Xia, Xiufen Yang, Junlin Lu, Chen‐Qian Liu, Jian‐Xuan Sun, Cong Liu, Shaogang Wang
Software Mentions: 1
Published: almost 4 years ago
10.1186/1752-0509-2-101
Genetic and systems level analysis of Drosophila sticky/citron kinase and dFmr1 mutants reveals common regulation of genetic networks
Cited by: 9
Author(s): Christopher R. Bauer, Andrew Michael Epstein, Sarah Sweeney, Daniela C. Zarnescu, Giovanni Bosco
Software Mentions: 1
Published: about 16 years ago
10.1038/s41598-020-68890-7
Estrogens decrease osteoclast number by attenuating mitochondria oxidative phosphorylation and ATP production in early osteoclast precursors
Cited by: 41
Author(s): Ha‐Neui Kim, Filipa Ponte, Intawat Nookaew, Serra Ucer Ozgurel, Adriana Marques-Carvalho, Srividhya Iyer, Aaron Warren, Nùkhet Aykin-Burns, Kimberly J. Krager, Vilma A. Sardão, Li Han, Rafael de Cabo, Haibo Zhao, Robert L. Jilka, Stavros C. Manolagas, Maria Almeida
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-69164-y
Systemic lipid dysregulation is a risk factor for macular neurodegenerative disease
Cited by: 23
Author(s): Roberto Bonelli, Sasha M Woods, Brendan R E Ansell, Tjebo Heeren, Catherine Egan, Kamron Khan, Robyn H. Guymer, Jennifer Trombley, Martin Friedlander, Melanie Bahlo, Marcus Fruttiger
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-68988-y
Modulating electrophysiology of motor neural networks via optogenetic stimulation during neurogenesis and synaptogenesis
Cited by: 7
Author(s): Gelson J. Pagan‐Diaz, Jenny Drnevich, Karla P. Ramos-Cruz, Richard Sam, Parijat Sengupta, Rashid Bashir
Software Mentions: 1
Published: over 4 years ago
10.1038/s41398-019-0470-1
A high-fat diet promotes depression-like behavior in mice by suppressing hypothalamic PKA signaling
Cited by: 73
Author(s): Eirini Vagena, Jae K. Ryu, Bernat Baeza-Raja, Nicola M. Walsh, Catriona Syme, Jonathan P. Day, Miles D. Houslay, George S. Baillie
Software Mentions: 1
Published: over 5 years ago
10.1038/s41398-020-01127-3
Differential and spatial expression meta-analysis of genes identified in genome-wide association studies of depression
Cited by: 18
Author(s): Wennie Wu, Derek Howard, Etienne Sibille, Leon French
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41398-020-01139-z
A genome-wide methylation study reveals X chromosome and childhood trauma methylation alterations associated with borderline personality disorder
Cited by: 6
Author(s): Maria Arranz, Cristina Gallego-Fábrega, Ana Martín-Blanco, Joaquim Soler, Matilde Elices, Elisabet Domínguez-Clavé, Juliana Salazar, Daniel Vega, Laia Briones-Buixassa, Juan Carlos Pascual
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41398-020-01171-z
Dopamine regulates pancreatic glucagon and insulin secretion via adrenergic and dopaminergic receptors
Cited by: 39
Author(s): Despoina Aslanoglou, Suzanne Bertera, Marta Sánchez-Soto, R. Benjamin Free, Jeongkyung Lee, Wei Zong, Xiangning Xue, Shristi Shrestha, Marcela Briššová, Ryan W. Logan, Claes B. Wollheim, Massimo Trucco, Vijay Yechoor, David R. Sibley, Rita Bottino, Zachary Freyberg
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41398-021-01367-x
White matter deficits in cocaine use disorder: convergent evidence from in vivo diffusion tensor imaging and ex vivo proteomic analysis
Cited by: 9
Author(s): Lucca Pizzato Tondo, Thiago Wendt Viola, Gabriel R. Fries, Bruno Kluwe-Schiavon, Leonardo Mello Rothmann, Renata B. Cupertino, Pedro Eugênio Ferreira, Alexandre R. Franco, Scott D. Lane, Laura Stertz, Zhongming Zhao, Ruifeng Hu, Thomas D. Meyer, Joy M. Schmitz, Consuelo Walss‐Bass, Rodrigo Grassi‐Oliveira
Software Mentions: 1
Published: over 3 years ago
10.1038/s41398-021-01635-w
Exploration of alcohol use disorder-associated brain miRNA–mRNA regulatory networks
Cited by: 20
Author(s): Yolpanhchana Lim, Jennifer E. Beane, Yoshiaki Tanaka, Boting Ning, Christopher Husted, David C. Henderson, Yangfei Xiang, In‐Hyun Park, Lindsay A. Farrer, Huiping Zhang
Software Mentions: 1
Published: about 3 years ago
10.1093/treephys/tpw017
Adaptive mechanisms and genomic plasticity for drought tolerance identified in European black poplar (<i>Populus nigra</i>L.)
Cited by: 48
Author(s): Maud Viger, Helen K. Smith, David Cohen, J. Andrew DeWoody, Harriet Trewin, Marijke Steenackers, Catherine Bastien, Gail Taylor
Software Mentions: 1
Published: over 8 years ago
10.1016/j.tube.2020.102033
Host transcriptional response to TB preventive therapy differentiates two sub-groups of IGRA-positive individuals
Cited by: 11
Author(s): Claire Broderick, Jacqueline M. Cliff, Ji-Sook Lee, Myrsini Kaforou, David Moore
Software Mentions: 1
Published: over 3 years ago
10.4274/tjh.galenos.2020.2020.0144
LEF1 Induces DHRS2 Gene Expression in Human Acute Leukemia Jurkat T-Cells
Cited by: 1
Author(s): Sema Sırma Ekmekçi, Zeliha Emrence, Neslihan Abacı, Melda Sarıman, Burcu Salman, Cumhur Gökhan Ekmekçi, Çağrı Güleç
Software Mentions: 1
Published: about 4 years ago
10.1186/s13104-018-4020-3
Transcriptomes of microglia in experimental cerebral malaria in mice in the presence and absence of Type I Interferon signaling
Cited by: 5
Author(s): Carlos Talavera-López, Barbara Capuccini, Richard Mitter, Jing-wen Lin, Jean Langhorne
Software Mentions: 1
Published: almost 6 years ago
10.1186/s13104-020-05121-2
Physical activity and blood gene expression profiles: the Norwegian Women and Cancer (NOWAC) Post-genome cohort
Cited by: 1
Author(s): Karina Standahl Olsen, Marko Lukic, Kristin Benjaminsen Borch
Software Mentions: 1
Published: over 4 years ago
10.1128/mBio.00342-18
Interleukin-1β Signaling in Dendritic Cells Induces Antiviral Interferon Responses
Cited by: 46
Author(s): Lauren Aarreberg, Courtney Wilkins, Hilario J. Ramos, Richard Green, Michael A. Davis, Kwan T. Chow, Michael Gale
Software Mentions: 1
Published: over 6 years ago
10.1128/mBio.02778-19
Ubiquitination of <i>Listeria</i> Virulence Factor InlC Contributes to the Host Response to Infection
Cited by: 9
Author(s): Edith Gouin, Damien Balestrino, Orhan Rasid, Marie–Anne Nahori, Véronique Villiers, Francis Impens, Stevenn Volant, Thomas Vogl, Yves Jacob, Olivier Dussurget, Pascale Cossart
Software Mentions: 1
Published: almost 5 years ago
10.1128/mBio.02512-19
Comparative Genomics for the Elucidation of Multidrug Resistance in Candida lusitaniae
Cited by: 31
Author(s): Abhilash Kannan, Sandra Asner, Emilie Trachsel, Steven L. Kelly, Josie E. Parker, Dominique Sanglard
Software Mentions: 1
Published: almost 5 years ago
10.1128/mBio.00948-20
A Chemical Counterpunch: Chromobacterium violaceum ATCC 31532 Produces Violacein in Response to Translation-Inhibiting Antibiotics
Cited by: 19
Author(s): Gabriel L. Lozano, Changhui Guan, Yanzhuan Cao, Bradley R. Borlee, Nichole A. Broderick, Eric V. Stabb, Jo Handelsman
Software Mentions: 1
Published: over 4 years ago
10.1128/mBio.01911-20
Genotoxic Effect of <i>Salmonella</i> Paratyphi A Infection on Human Primary Gallbladder Cells
Cited by: 14
Author(s): Ludovico P Sepe, Kimberly Hartl, Amina Iftekhar, Hilmar Berger, Naveen Kumar, Christian Goosmann, Sascha Chopra, Sven Schmidt, Rajendra Kumar Gurumurthy, Thomas F. Meyer, Francesco Boccellato
Software Mentions: 1
Published: about 4 years ago
10.1128/mBio.03374-20
A Novel Trichomonas vaginalis Surface Protein Modulates Parasite Attachment via Protein:Host Cell Proteoglycan Interaction
Cited by: 6
Author(s): Brenda M. Molgora, Anand Kumar, Michael J. Sweredoski, Annie Moradian, Sonja Hess, Patricia J. Johnson
Software Mentions: 1
Published: almost 4 years ago
10.1128/mBio.01572-21
Unfolded Protein Response Inhibition Reduces Middle East Respiratory Syndrome Coronavirus-Induced Acute Lung Injury
Cited by: 14
Author(s): Amy C. Sims, Hugh D. Mitchell, Lisa E. Gralinski, Jennifer Kyle, Kristin Burnum-Johnson, Mariam Lam, M. Leslie Fulcher, Ande West, Richard Smith, Scott H. Randell, Thomas O. Metz, Timothy P. Sheahan, Katrina M. Waters, Ralph S. Baric
Software Mentions: 1
Published: about 3 years ago
10.1128/mBio.01247-21
Plasmodium vivax Infection Alters Mitochondrial Metabolism in Human Monocytes
Cited by: 2
Author(s): Suelen Queiroz Diniz, Andréa Teixeira-Carvalho, María Marta Figueiredo, Pedro Augusto Carvalho Costa, Bruno Coelho Rocha, Olindo Assis Martins‐Filho, Ashley Goncalves, Dhélio Batista Pereira, Mauro Shugiro Tada, Fabiano Oliveira, Ricardo T. Gazzinelli, Lis Ribeiro do Valle Antonelli
Software Mentions: 1
Published: about 3 years ago
10.1128/mSphere.00119-16
Transcriptomic Analysis of the Activity of a Novel Polymyxin against Staphylococcus aureus
Cited by: 13
Author(s): Jinxin Zhao, Soon-Ee Cheah, Kade D. Roberts, Roger L. Nation, Phillip E. Thompson, Tony Velkov, Zong‐Jun Du, Matthew D. Johnson, Jian Li
Software Mentions: 1
Published: about 8 years ago
10.1186/s13104-019-4410-1
Unique microglia expression profile in developing white matter
Cited by: 20
Author(s): Ori Staszewski, Nora Hagemeyer
Software Mentions: 1
Published: over 5 years ago
10.1186/1756-0500-6-428
Parallel deep transcriptome and proteome analysis of zebrafish larvae
Cited by: 15
Author(s): Magnus Palmblad, Christiaan V. Henkel, Ron P. Dirks, Annemarie H. Meijer, André M. Deelder, Herman P. Spaink
Software Mentions: 1
Published: about 11 years ago
10.1186/1756-0500-7-871
miRNome of inflammatory breast cancer
Cited by: 35
Author(s): D. V. Maltseva, Vladimir Galatenko, Timur R. Samatov, Svetlana Zhikrivetskaya, N. A. Khaustova, И. Н. Нечаев, M. Yu. Shkurnikov, A. V. Lebedev, Irina Mityakina, А. Д. Каприн, Udo Schumacher, Alexander G. Tonevitsky
Software Mentions: 1
Published: almost 10 years ago
10.1186/s13104-015-1567-0
Derivation of induced pluripotent stem cells from orangutan skin fibroblasts
Cited by: 22
Author(s): Krishna Ramaswamy, Wing Yan Yik, Xiaoming Wang, Erin N. Oliphant, Wange Lu, Darryl Shibata, Oliver A. Ryder, Joseph G. Hacia
Software Mentions: 1
Published: about 9 years ago
10.1186/1479-7364-8-10
Novel age-dependent targets in vestibular schwannomas
Cited by: 4
Author(s): Amos Toren, Juergen K.V. Reichardt, Ali Andalibi, Nancy Hsu, Joni K. Doherty, William H. Slattery, Ruty Mehrian‐Shai
Software Mentions: 1
Published: over 10 years ago
10.1186/1471-2180-12-9
Interleukin-8 is the single most up-regulated gene in whole genome profiling of H. pylori exposed gastric epithelial cells
Cited by: 67
Author(s): Lars Lohne Eftang, Ying Esbensen, Tone Tannæs, Ida Rashida Khan Bukholm, Geir Bukholm
Software Mentions: 1
Published: almost 13 years ago
10.1186/1479-7364-7-2
Gene selection and cancer type classification of diffuse large-B-cell lymphoma using a bivariate mixture model for two-species data
Cited by: 9
Author(s): Yongxuan Su, Dahlia M. Nielsen, Lei Zhu, Kristy L. Richards, Steven E. Suter, Matthew Breen, Alison A. Motsinger‐Reif, Jason A. Osborne
Software Mentions: 1
Published: almost 12 years ago
10.1161/HYPERTENSIONAHA.121.17396
Influence of Maternal Lifestyle and Diet on Perinatal DNA Methylation Signatures Associated With Childhood Arterial Stiffness at 8 to 9 Years
Cited by: 9
Author(s): Robert Murray, Negusse Tadesse Kitaba, Elie Antoun, Philip Titcombe, Sheila J. Barton, Cyrus Cooper, Hazel Inskip, Graham C. Burdge, Pamela Mahon, John Deanfield, Julian Halcox, Elizabeth A Ellins, Jennifer Bryant, Charles Peebles, Karen A. Lillycrop, Keith M. Godfrey, Mark A. Hanson
Software Mentions: 1
Published: about 3 years ago
10.1186/1756-0500-5-40
Factors affecting the yield of microRNAs from laser microdissectates of formalin-fixed tissue sections
Cited by: 6
Author(s): Santosh K. Patnaik, Eric Kannisto, Sai Yendamuri
Software Mentions: 1
Published: almost 13 years ago
10.7150/ijbs.57338
MiR-17-5p and MKL-1 modulate stem cell characteristics of gastric cancer cells
Cited by: 6
Author(s): Zhou-Tong Dai, Xiang Yuan, Yuanyuan Duan, Jun Wang, Jia Peng Li, Huimin Zhang, Chao Cheng, Qiong Wang, Tongcun Zhang, Xing–Hua Liao
Software Mentions: 1
Published: almost 4 years ago
10.7150/ijbs.59019
NEK2 plays an active role in Tumorigenesis and Tumor Microenvironment in Non-Small Cell Lung Cancer
Cited by: 10
Author(s): Rui Bai, Cheng Yuan, Wenjie Sun, Jianguo Zhang, Yuan Luo, Yanping Gao, Yangyi Li, Yan Gong, Conghua Xie
Software Mentions: 1
Published: almost 4 years ago
10.1186/s13104-021-05635-3
Integrated microRNA and mRNA gene expression in peripheral blood mononuclear cells in response to acute psychosocial stress: a repeated-measures within-subject pilot study
Cited by: 1
Author(s): Magdalena Jurkiewicz, Anett Mueller-Alcazar, Dirk Moser, Indralatha Jayatilaka, Anatoly Mikhailik, Jamie Ferri, Nia Fogelman, Turhan Canli
Software Mentions: 1
Published: over 3 years ago
10.1155/2021/7394344
PP2 Ameliorates Renal Fibrosis by Regulating the NF-κB/COX-2 and PPARγ/UCP2 Pathway in Diabetic Mice
Cited by: 11
Author(s): Jinying Wei, Xia Deng, Li Yang, Runmei Li, Zhaohua Yang, Xiuyuan Li, Shan Song, Yonghong Shi, Huijun Duan, Haijiang Wu
Software Mentions: 1
Published: about 3 years ago
10.7150/ijbs.54074
KIF11 promotes cell proliferation via ERBB2/PI3K/AKT signaling pathway in gallbladder cancer
Cited by: 21
Author(s): Wei Dang, Rui Bian, Fan Qingquan, Chen Cai, Hu Ping, Song Xiaoling, Hao Wu, Gu J
Software Mentions: 1
Published: almost 4 years ago
10.1186/1756-9966-31-68
Molecular markers associated with outcome and metastasis in human pancreatic cancer
Cited by: 63
Author(s): Ann Van den Broeck, Hugo Vankelecom, Rudy van Eijsden, Olivier Govaere, Baki Topal
Software Mentions: 1
Published: over 12 years ago
10.1186/s13046-016-0283-5
The leukemogenic fusion gene MLL-AF9 alters microRNA expression pattern and inhibits monoblastic differentiation via miR-511 repression
Cited by: 12
Author(s): Katrin K. Fleischmann, Philipp Pagel, Julia von Frowein, Thomas Magg, Adelbert A. Roscher, Irene Schmid
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13046-017-0614-1
circGFRA1 and GFRA1 act as ceRNAs in triple negative breast cancer by regulating miR-34a
Cited by: 261
Author(s): Rongfang He, Peng Liu, Xiaoming Xie, Yujuan Zhou, Qianjin Liao, Wei Xiong, Xiaoling Li, Guiyuan Li, Zhaoyang Zeng
Software Mentions: 1
Published: about 7 years ago
10.1186/s13046-018-0838-8
circFBLIM1 act as a ceRNA to promote hepatocellular cancer progression by sponging miR-346
Cited by: 119
Author(s): Ning Bai, Eming Peng, Xingsheng Qiu, Ning Lyu, Zhejia Zhang, Yiming Tao, Xinying Li, Zhiming Wang
Software Mentions: 1
Published: over 6 years ago
10.1186/s13046-018-0953-6
EBV-miR-BART8-3p induces epithelial-mesenchymal transition and promotes metastasis of nasopharyngeal carcinoma cells through activating NF-κB and Erk1/2 pathways
Cited by: 62
Author(s): Cheng Lin, Jingfeng Zong, Wei Lin, Minghui Wang, Yujin Xu, Rui Zhou, Lin Shen, Qiaojuan Guo, Honglin Chen, Yunbin Ye, Bin Zhang, Jianji Pan
Software Mentions: 1
Published: about 6 years ago
10.1186/s13046-019-1313-x
Macrophage-derived exosomal microRNA-501-3p promotes progression of pancreatic ductal adenocarcinoma through the TGFBR3-mediated TGF-β signaling pathway
Cited by: 187
Author(s): Zi Yin, Tingting Ma, Bowen Huang, Lehang Lin, Yu Zhou, Jinhai Yan, Yiping Zou, Sheng Chen
Software Mentions: 1
Published: over 5 years ago
10.1186/s13046-019-1491-6
miR-624-5p promoted tumorigenesis and metastasis by suppressing hippo signaling through targeting PTPRB in osteosarcoma cells
Cited by: 34
Author(s): Yi Luo, Wei Liu, Pengyu Tang, Dongdong Jiang, Changjiang Gu, Yu‐Min Huang, Fangyi Gong, Yuluo Rong, Dingfei Qian, Jian Chen, Zheng Zhou, Shujie Zhao, Jiaxing Wang, Tan Xu, Yongzhong Wei, Guoyong Yin, Jin Fan, Wei Cai
Software Mentions: 1
Published: almost 5 years ago
10.1186/s13046-019-1507-2
Exosome-mediated transfer of miR-93-5p from cancer-associated fibroblasts confer radioresistance in colorectal cancer cells by downregulating FOXA1 and upregulating TGFB3
Cited by: 79
Author(s): Xijuan Chen, Junqi Liu, Qinglan Zhang, Baoxing Liu, Yan Cheng, Yonglei Zhang, Yanan Sun, Hong Ge, Yingqiang Liu
Software Mentions: 1
Published: over 4 years ago
10.1186/s13046-020-01631-w
Human umbilical cord mesenchymal stem cells-derived exosomes deliver microRNA-375 to downregulate ENAH and thus retard esophageal squamous cell carcinoma progression
Cited by: 59
Author(s): Zhao He, Weihao Li, Tianliang Zheng, Donglei Liu, Song Zhao
Software Mentions: 1
Published: over 4 years ago
10.1186/s13046-020-01750-4
Loss of PLK2 induces acquired resistance to temozolomide in GBM via activation of notch signaling
Cited by: 17
Author(s): Alafate Wahafu, Dongze Xu, Wei Wu, Jianyang Xiang, Xudong Ma, Wei Xie, Xia Bai, Maode Wang, Jia Wang
Software Mentions: 1
Published: about 4 years ago
10.1186/s13046-020-01819-0
Lnc-GAN1 expression is associated with good survival and suppresses tumor progression by sponging mir-26a-5p to activate PTEN signaling in non-small cell lung cancer
Cited by: 14
Author(s): Ruiqi Wang, Xueying Long, Ningning Zhou, Dongni Chen, Mei‐Yin Zhang, Zhesheng Wen, Lanjun Zhang, Fazhong He, Zongqing Zhou, Shi-Juan Mai, Huiyun Wang
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12890-017-0472-9
Unsupervised gene expression analyses identify IPF-severity correlated signatures, associated genes and biomarkers
Cited by: 24
Author(s): Yunguan Wang, Jaswanth Yella, Jing Chen, Francis X. McCormack, Satish K. Madala, Anil G. Jegga
Software Mentions: 1
Published: about 7 years ago
10.1186/s13046-021-01928-4
Novel LncRNA OXCT1-AS1 indicates poor prognosis and contributes to tumorigenesis by regulating miR-195/CDC25A axis in glioblastoma
Cited by: 18
Author(s): Zhong Chen, Qian Yu, Yucong Peng, Shanshan Zhou, Zhendong Liu, Yong Deng, Leiguang Guo, Shen Zhao, Gao Chen
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2466-11-39
The asthma candidate gene NPSR1 mediates isoform specific downstream signalling
Cited by: 22
Author(s): Christina Orsmark-Pietras, Johanna Vendelin, Francesca Anedda, Sara Bruce, Mikael Adner, L. Sundman, Ville Pulkkinen, Harri Alenius, Mauro D’Amato, Cilla Söderhäll, Juha Kere
Software Mentions: 1
Published: over 13 years ago