bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0029059

Discovery and Validation of Molecular Biomarkers for Colorectal Adenomas and Cancer with Application to Blood Testing
Cited by: 34
Author(s): Lawrence C. LaPointe, Susanne K. Pedersen, Robert Dunne, Glenn Brown, Letitia Pimlott, Snigdha Gaur, Aidan McEvoy, Melissa L. Thomas, David Wattchow, Peter L. Molloy, Graeme P. Young
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0056049

The Maternal Transcriptome of the Crustacean Parhyale hawaiensis Is Inherited Asymmetrically to Invariant Cell Lineages of the Ectoderm and Mesoderm
Cited by: 23
Author(s): Peter Nestorov, Florian Battke, Mitchell P. Levesque, Matthias Gerberding
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0078585

Gene Expression Profiling in Preterm Infants: New Aspects of Bronchopulmonary Dysplasia Development
Cited by: 49
Author(s): Jacek J Pietrzyk, Przemko Kwinta, Embjørg J. Wollen, Mirosław Bik-Multanowski, Anna Madetko‐Talowska, Clara‐Cecilie Günther, Mateusz Jagła, Tomasz Tomasik, Ola Didrik Saugstad
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0085567

Transcriptional Profiling of Whole Blood Identifies a Unique 5-Gene Signature for Myelofibrosis and Imminent Myelofibrosis Transformation
Cited by: 12
Author(s): Hans Carl Hasselbalch, Vibe Skov, Thomas Stauffer Larsen, Mads Thomassen, Caroline Hasselbalch Riley, Morten Krogh Jensen, Ole Weis Bjerrum, Torben A. Kruse
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12885-020-07598-3

Identification and validation of a six-gene signature associated with glycolysis to predict the prognosis of patients with cervical cancer
Cited by: 14
Author(s): Luya Cai, Chuan Hu, Shanshan Yu, Lixiao Liu, Xiaobo Yu, Jiahua Chen, Xuan Li, Fan Lin, Cheng Zhang, Wenfeng Li, Xiaojian Yan
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0059720

Transcriptional Profiling of Rice Early Response to Magnaporthe oryzae Identified OsWRKYs as Important Regulators in Rice Blast Resistance
Cited by: 84
Author(s): Tong Wei, Bin Ou, Jinbin Li, Yang Zhao, Dongshu Guo, Youyong Zhu, Zhangliang Chen, Hongya Gu, Chengyun Li, Genji Qin, Qu Liu
Software Mentions: 1
Published: over 11 years ago

10.1155/2013/617243

The Studies of Chlorogenic Acid Antitumor Mechanism by Gene Chip Detection: The Immune Pathway Gene Expression
Cited by: 32
Author(s): Tian Yi Kang, Hua Rong Yang, Jie Zhang, Dan Li, Jie Lin, Li Wang, Xiaoping Xu
Software Mentions: 1
Published: almost 12 years ago

10.1186/s40104-020-00475-w

Dietary plant extracts modulate gene expression profiles in alveolar macrophages of pigs experimentally infected with porcine reproductive and respiratory syndrome virus
Cited by: 3
Author(s): Kwang‐Wook Kim, Peng Ji, Minho Song, Min‐Che Tung, David Bravo, J. E. Pettigrew, Yanhong Liu
Software Mentions: 1
Published: over 4 years ago

10.1186/s12885-021-08293-7

A circular RNAs dataset landscape reveals potential signatures for the detection and prognosis of early-stage lung adenocarcinoma
Cited by: 5
Author(s): Zhiying Chen, Jiahui Wei, Min Li, Yufei Zhao
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0215870

Relief from nitrogen starvation entails quick unexpected down-regulation of glycolytic/lipid metabolism genes in enological Saccharomyces cerevisiae
Cited by: 0
Author(s): Catherine Tesnière, Chloé Bessière, Martine Pradal, Isabelle Sanchez, Bruno Blondin, Frédéric Bigey
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-020-07590-x

Expression and prognostic analyses of the insulin-like growth factor 2 mRNA binding protein family in human pancreatic cancer
Cited by: 9
Author(s): Xiaoping Chen, Shu-Yi Hu, Chen Zhu, Xihu Qin
Software Mentions: 1
Published: about 4 years ago

10.18632/aging.103460

Comprehensive characterization of the tumor microenvironment for assessing immunotherapy outcome in patients with head and neck squamous cell carcinoma
Cited by: 6
Author(s): Jian Zhang, Xi Zhong, Huali Jiang, Hualong Jiang, Tao Xie, Yunhong Tian, Rong Li, Baiyao Wang, Jiexia Zhang, Yawei Yuan
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0146052

What Do We Learn from Spheroid Culture Systems? Insights from Tumorspheres Derived from Primary Colon Cancer Tissue
Cited by: 47
Author(s): Komal Qureshi-Baig, Pit Ullmann, Fabien Rodriguez, Sónia Frasquilho, Petr V. Nazarov, Serge Haan, Elisabeth Letellier
Software Mentions: 1
Published: almost 9 years ago

10.1074/jbc.RA120.015585

Agonist-independent Gαz activity negatively regulates beta-cell compensation in a diet-induced obesity model of type 2 diabetes
Cited by: 14
Author(s): Michael D. Schaid, Cara L Green, Darby Peter, Shannon J. Gallagher, Erin Guthery, Kathryn Carbajal, Jeffrey M. Harrington, Grant M. Kelly, A. Reuter, Molly L. Wehner, Allison L. Brill, Joshua C. Neuman, Dudley W. Lamming, Michelle E. Kimple
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.jbc.2021.100979

Neurological impairment caused by Schistosoma mansoni systemic infection exhibits early features of idiopathic neurodegenerative disease
Cited by: 3
Author(s): Juciano Gasparotto, Mário Roberto Senger, Emílio Telles de Sá Moreira, Pedro Ozorio Brum, Flávio Gabriel Carazza Kessler, Daniel Oppermann Peixoto, Alana Castro Panzenhagen, Lin Kooi Ong, Marlene Campos Soares, Patrícia Alves Reis, Giuliana Viegas Schirato, Walter C. G. Valente, Bogar Omar Araújo Montoya, Floriano P. Silva, José Cláudio Fonseca Moreira, Felipe Dal‐Pizzol, Hugo C. Castro‐Faria‐Neto, Daniel Pens Gelain
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0155999

Refining Pathways: A Model Comparison Approach
Cited by: 5
Author(s): Giusi Moffa, Gerrit Erdmann, Oksana Voloshanenko, Christian Hundsrucker, Mohammad Javad Sadeh, Michael Boutros, Rainer Spang
Software Mentions: 1
Published: over 8 years ago

10.1186/s13036-019-0193-0

Exosomes derived from microRNA-138-5p-overexpressing bone marrow-derived mesenchymal stem cells confer neuroprotection to astrocytes following ischemic stroke via inhibition of LCN2
Cited by: 96
Author(s): Yiming Deng, Duanduan Chen, Feng Gao, Hong Liu, Guojun Zhang, Xuan Sun, Lian Liu, Dapeng Mo, Ning Ma, Ligang Song, Xiaochuan Huo, Tianyi Yan, Jingbo Zhang, Zhongrong Miao
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2407-10-627

Tumour auto-antibody screening: performance of protein microarrays using SEREX derived antigens
Cited by: 19
Author(s): René Stempfer, Parvez Syed, Klemens Vierlinger, Rudolf Pichler, Eckart Meese, Petra Leidinger, Nicole Ludwig, Albert Kriegner, Christa Nöhammer, Andreas Weinhäusel
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0175242

Cyclosporine A alters expression of renal microRNAs: New insights into calcineurin inhibitor nephrotoxicity
Cited by: 31
Author(s): Jennifer Gooch, Clayton Maxwell King, Cynthia E Francis, Paul S. García, Yun Bai
Software Mentions: 1
Published: over 7 years ago

10.1186/1423-0127-17-64

Overexpression of hTERT increases stem-like properties and decreases spontaneous differentiation in human mesenchymal stem cell lines
Cited by: 88
Author(s): Chih–Chien Tsai, Chunli Chen, Hwa-Chung Liu, Yi-Ting Lee, Hsei–Wei Wang, Lein-Tuan Hou, Shih‐Chieh Hung
Software Mentions: 1
Published: over 14 years ago

10.1186/s12885-018-4633-x

Interleukin 8 is a biomarker of telomerase inhibition in cancer cells
Cited by: 3
Author(s): Peter D. Solomon, Yujuan Dong, Shaillay Kumar Dogra, Romi Gupta
Software Mentions: 1
Published: over 6 years ago

10.1186/s12929-019-0595-9

RETRACTED ARTICLE: Circular RNA circ_0003204 inhibits proliferation, migration and tube formation of endothelial cell in atherosclerosis via miR-370-3p/TGFβR2/phosph-SMAD3 axis
Cited by: 93
Author(s): Shanchao Zhang, Guang-Jing Song, Jing Yuan, Shan Qiao, Shan Xu, Zhihua Si, Yang Yang, Xuxu Xu, Aihua Wang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0053107

Poly(Dimethylsiloxane) (PDMS) Affects Gene Expression in PC12 Cells Differentiating into Neuronal-Like Cells
Cited by: 32
Author(s): Joanna M. Łopacińska, Jenny Emnéus, Martin Dufva
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0047490

Hepatitis B Virus-Specific miRNAs and Argonaute2 Play a Role in the Viral Life Cycle
Cited by: 49
Author(s): C. Nelson Hayes, Sakura Akamatsu, Masataka Tsuge, Daiki Miki, Rie Akiyama, Hiromi Abe, Hidenori Ochi, Nobuhiko Hiraga, Michio Imamura, Shoichi Takahashi, Yoshiiku Kawakami, Waka Ohishi, Kazuaki Chayama
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0200652

Impact of congenital cytomegalovirus infection on transcriptomes from archived dried blood spots in relation to long-term clinical outcome
Cited by: 5
Author(s): Roberta Rovito, Hans-Jörg Warnatz, Szymon M. Kiełbasa, Hailiang Mei, Vyacheslav Amtislavskiy, Ramon Arens, Marie–Laure Yaspo, Hans Lehrach, Aloys C.M. Kroes, Jelle J. Goeman, Ann C.T.M. Vossen
Software Mentions: 1
Published: over 6 years ago

10.1080/21623945.2020.1795434

Integrative analyses of biomarkers and pathways for adipose tissue after bariatric surgery
Cited by: 17
Author(s): Yingshan Liu, Jing Jin, Yanshan Chen, Chuna Chen, Zhenguo Chen, Lingling Xu
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0091728

Characterization of the Altered Gene Expression Profile in Early Porcine Embryos Generated from Parthenogenesis and Somatic Cell Chromatin Transfer
Cited by: 9
Author(s): Chi Zhou, J.R. Dobrinsky, Stephen Tsoi, G. R. Foxcroft, Walter T. Dixon, Paul Stothard, J. Verstegen, Michael K. Dyck
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0056122

Differential Effects of Drug Interventions and Dietary Lifestyle in Developing Type 2 Diabetes and Complications: A Systems Biology Analysis in LDLr−/− Mice
Cited by: 21
Author(s): Marijana Radonjić, Peter Y. Wielinga, Suzan Wopereis, Thomas Kelder, Varshna Goelela, Lars Verschuren, Karin Toet, Wim van Duyvenvoorde, Bianca van der Werff van der Vat, Johanna H. M. Stroeve, N.H.P. Cnubben, Teake Kooistra, Ben van Ommen, Robert Kleemann
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0048651

Py2T Murine Breast Cancer Cells, a Versatile Model of TGFβ-Induced EMT In Vitro and In Vivo
Cited by: 60
Author(s): Lorenz Waldmeier, Nathalie Meyer-Schaller, Maren Diepenbruck, Gerhard Christofori
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0077232

High-Throughput 3D Screening Reveals Differences in Drug Sensitivities between Culture Models of JIMT1 Breast Cancer Cells
Cited by: 152
Author(s): Vesa Hongisto, Sandra Jernström, Vidal Fey, John-Patrick Mpindi, Kristine Kleivi Sahlberg, Olli Kallioniemi, Merja Perälä
Software Mentions: 1
Published: about 11 years ago

10.1186/s12885-020-07725-0

Identification of a novel six autophagy-related genes signature for the prognostic and a miRNA-related autophagy predictor for anti-PD-1 therapy responses in prostate cancer
Cited by: 9
Author(s): Lei Wu, Quan Wen, Guojun Yue, Qiong Luo, Dongxu Peng, Ying Pan, Guihai Zhang
Software Mentions: 1
Published: almost 4 years ago

10.18632/aging.102857

Adipose-derived mesenchymal stem cells-derived exosome-mediated microRNA-342-5p protects endothelial cells against atherosclerosis
Cited by: 52
Author(s): Xiaohui Xing, Zhongchen Li, Xin Yang, Mengyou Li, Chao Liu, Yingxin Pang, Zhang Liyong, Xueyuan Li, Guangcun Liu, Yi Xiao
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12885-021-08525-w

Bioinformatics analysis of C3 and CXCR4 demonstrates their potential as prognostic biomarkers in clear cell renal cell carcinoma (ccRCC)
Cited by: 5
Author(s): Jing Quan, Yuchen Bai, Yunbei Yang, Er Lei Han, Hong Bai, Qi Zhang, Dahong Zhang
Software Mentions: 1
Published: over 3 years ago

10.7150/jca.37313

Enhanced expression of FCER1G predicts positive prognosis in multiple myeloma
Cited by: 20
Author(s): Lin Fu, Zhiheng Cheng, Fen Dong, Liang Qin, Longzhen Cui, Yan Liu, Tiansheng Zeng, Wenhui Huang, Jinghong Chen, Ying Pang, Ye Xu, Guangsheng Wu, Tingting Qian, Yang Chen, Chaozeng Si
Software Mentions: 1
Published: almost 5 years ago

10.7150/jca.39511

Curcumin Enhances Radiosensitization of Nasopharyngeal Carcinoma via Mediating Regulation of Tumor Stem-like Cells by a CircRNA Network
Cited by: 31
Author(s): Daoqi Zhu, Meng Shao, Jiabin Yang, Fei Miao, Shiya Liu, Dandan Lou, Ruijiao Gao, Ying Liu, Aiwu Li, Ying Lv, Zhixian Mo, Qian Fan
Software Mentions: 1
Published: almost 5 years ago

10.7150/jca.41415

TOP2A Promotes Lung Adenocarcinoma Cells' Malignant Progression and Predicts Poor Prognosis in Lung Adenocarcinoma
Cited by: 38
Author(s): Fan Kou, Houfang Sun, Lei Wu, Baihui Li, Bailu Zhang, Xuezhou Wang, Lili Yang
Software Mentions: 1
Published: almost 5 years ago

10.7150/jca.34640

Decreased Expression of NUSAP1 Predicts Poor Overall Survival in Cervical Cancer
Cited by: 18
Author(s): Qiqi Xie, Wen Ouyang, Mingwei Zhang, Huimei Wang, Qiuyuan Yue
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms20153767

Gene Expression Profiling Reveals that PXR Activation Inhibits Hepatic PPARα Activity and Decreases FGF21 Secretion in Male C57Bl6/J Mice
Cited by: 10
Author(s): Sharon Ann Barretto, Frédèric Lasserre, Anne Fougerat, Lorraine Smith, Tiffany Fougeray, Céline Lukowicz, Arnaud Polizzi, Sarra Smati, Marion Régnier, Claire Naylies, Colette Bétoulières, Yannick Lippi, Hervé Guillou, Nicolas Loiseau, Laurence Gamet-Payrastre, Laïla Mselli-Lakhal, Sandrine Ellero‐Simatos
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-020-06869-3

SCDb: an integrated database of stomach cancer
Cited by: 7
Author(s): Erli Gu, Wei Song, Ajing Liu, Wang Hong
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0035191

Manipulation of Plant Defense Responses by the Tomato Psyllid (Bactericerca cockerelli) and Its Associated Endosymbiont Candidatus Liberibacter Psyllaurous
Cited by: 86
Author(s): Clare L. Casteel, Allison K. Hansen, Linda L. Walling, Timothy D. Paine
Software Mentions: 1
Published: over 12 years ago

10.1186/s12967-019-2103-0

The clinical characteristics and molecular mechanism of pituitary adenoma associated with meningioma
Cited by: 7
Author(s): Haibo Zhu, Yun‐gen Miao, Yutao Shen, Jing Guo, Weiyan Xie, Sida Zhao, Wei Dong, Yazhou Zhang, Chuzhong Li
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0008182

Seasonal Differences of Gene Expression Profiles in Song Sparrow (Melospiza melodia) Hypothalamus in Relation to Territorial Aggression
Cited by: 83
Author(s): Motoko Mukai, Kirstin Replogle, Jenny Drnevich, Gang Wang, Douglas W. Wacker, Mark Band, David F. Clayton, John C. Wingfield
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0130300

Down Regulation of CLDND1 Induces Apoptosis in Breast Cancer Cells
Cited by: 14
Author(s): Chandrani Achari, Sofia Winslow, Christer Larsson
Software Mentions: 1
Published: over 9 years ago

10.7150/jca.48770

Circular RNA microarray expression profile and potential function of circ0005875 in clear cell renal cell carcinoma
Cited by: 13
Author(s): Qi Lv, Chunhui Ma, Haoming Li, Xuefeng Tan, Gangmin Wang, Yinan Zhang, Peijun Wang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12885-018-4546-8

Gene expression profiling of 1200 pancreatic ductal adenocarcinoma reveals novel subtypes
Cited by: 55
Author(s): Liang Zhao, Hongya Zhao, Hong Yan
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0105631

A Thirteen-Gene Expression Signature Predicts Survival of Patients with Pancreatic Cancer and Identifies New Genes of Interest
Cited by: 30
Author(s): Timothy E. Newhook, Edik M. Blais, James Lindberg, Sara J. Adair, Wenjun Xin, Jae K. Lee, Jason A. Papin, John T. Parsons, Todd W. Bauer
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2407-10-599

Prioritizing genes associated with prostate cancer development
Cited by: 33
Author(s): Ivan P. Gorlov, Kanishka Sircar, Hongya Zhao, Sankar N. Maity, Nora M. Navone, Olga Y. Gorlova, Patricia Troncoso, Curtis A. Pettaway, Jin Young Byun, Christopher J. Logothetis
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0024131

miR-143 Regulation of Prostaglandin-Endoperoxidase Synthase 2 in the Amnion: Implications for Human Parturition at Term
Cited by: 32
Author(s): Sun Young Kim, Roberto Romero, Adi L. Tarca, Gaurav Bhatti, Woo Jung Lee, Tinnakorn Chaiworapongsa, Sonia S. Hassan, Chong Jai Kim
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0050501

The Molecular Profiles of Neural Stem Cell Niche in the Adult Subventricular Zone
Cited by: 54
Author(s): Cheol Lee, Jiexiang Hu, Sherry Ralls, Toshio Kitamura, Y. Peng Loh, Yanqin Yang, Yoh‐suke Mukouyama, Sang‐Hyeon Ahn
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0110065

AtRD22 and AtUSPL1, Members of the Plant-Specific BURP Domain Family Involved in Arabidopsis thaliana Drought Tolerance
Cited by: 66
Author(s): Vokkaliga T. Harshavardhan, Lê Văn Sơn, Christiane Seiler, Astrid Junker, Kathleen Weigelt‐Fischer, Christian Klukas, Thomas Altmann, Nese Sreenivasulu, Helmut Bäumlein, Markus Kuhlmann
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0024004

Gene Expression and Biological Pathways in Tissue of Men with Prostate Cancer in a Randomized Clinical Trial of Lycopene and Fish Oil Supplementation
Cited by: 53
Author(s): Mark Jesus M. Magbanua, Ritu Roy, Eduardo V. Sosa, Vivian Weinberg, Scott Federman, Michael D. Mattie, Millie Hughes‐Fulford, Jeff Simko, Katsuto Shinohara, Christopher M. Haqq, Peter R. Carroll, June M. Chan
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2407-14-353

Investigation of HOXA9 promoter methylation as a biomarker to distinguish oral cancer patients at low risk of neck metastasis
Cited by: 16
Author(s): Kenichiro Uchida, Ratna Veeramachaneni, Bing Huey, Aditi Bhattacharya, Brian L. Schmidt, Donna G. Albertson
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0060665

Transcriptomic Analysis of Streptomyces coelicolor Differentiation in Solid Sporulating Cultures: First Compartmentalized and Second Multinucleated Mycelia Have Different and Distinctive Transcriptomes
Cited by: 41
Author(s): Paula Yagüe, Antonio Rodríguez‐García, María Teresa López-García, Juan F. Martı́n, Beatriz Rioseras, Jesús Sánchez, Ángel Manteca
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0031081

Genome-Wide Analysis of the Complex Transcriptional Networks of Rice Developing Seeds
Cited by: 81
Author(s): Liang‐Jiao Xue, Jingjing Zhang, Xue Hou
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0039088

Genome-Wide Profiling of Pluripotent Cells Reveals a Unique Molecular Signature of Human Embryonic Germ Cells
Cited by: 21
Author(s): Nikta Pashai, Haiping Hao, Angelo H. All, Siddharth Gupta, Raghothama Chaerkady, Alejandro De Los Angeles, John D. Gearhart, Candace L. Kerr
Software Mentions: 1
Published: over 12 years ago

10.7150/jca.57255

circ0101675 promotes malignant process via sponging miR-1278 and upregulating WNT3A/5A in non-small cell lung cancer
Cited by: 11
Author(s): Wei Du, Jianpeng Hu, Rong Hu, Min Yang, Yun Peng, Zhiwei Zhang, Yuehua Li, Xiu‐Sheng He
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0205602

A genomic ruler to assess oncogenic transition between breast tumor and stroma
Cited by: 6
Author(s): Shubhada Dhage, Amanda Ernlund, Kelly V. Ruggles, Deborah Axelrod, Russell S. Berman, Daniel F. Roses, Robert J. Schneider
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0171142

Identification of marginal causal relationships in gene networks from observational and interventional expression data
Cited by: 1
Author(s): Gilles Monneret, Florence Jaffrézic, Andrea Rau, Tatiana Zerjal, Grégory Nuel
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0093713

Gonadotropin-Releasing Hormone Agonists Sensitize, and Resensitize, Prostate Cancer Cells to Docetaxel in a p53-Dependent Manner
Cited by: 12
Author(s): Roberta M. Moretti, Marina Montagnani Marelli, Deanne Taylor, Paolo G.V. Martini, Monica Marzagalli, Patrizia Limonta
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0103744

IGF2 Promotes Growth of Adrenocortical Carcinoma Cells, but Its Overexpression Does Not Modify Phenotypic and Molecular Features of Adrenocortical Carcinoma
Cited by: 39
Author(s): Marine Guillaud‐Bataille, Bruno Ragazzon, Aurélien de Reyniès, Claire Chevalier, Isabelle Francillard, Olivia Barreau, Virginie Steunou, Johann Guillemot, Frédérique Tissier, Marthe Rizk-Rabin, Fernande René-Corail, Abir Al Ghuzlan, Guillaume Assié, Xavier Bertagna, Éric Baudin, Yves Le Bouc, Jérôme Bertherat, Éric Clauser
Software Mentions: 1
Published: over 10 years ago

10.1186/s12885-020-06743-2

INHBA is a prognostic predictor for patients with colon adenocarcinoma
Cited by: 40
Author(s): Xueying Li, Weiming Yu, Chao Liang, Yuan Xu, Miaozun Zhang, Xiaoyun Ding, Xianlei Cai
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0075556

Live Attenuated Rev-Independent Nef¯SIV Enhances Acquisition of Heterologous SIVsmE660 in Acutely Vaccinated Rhesus Macaques
Cited by: 7
Author(s): Nagadenahalli B. Siddappa, Mila Ayash-Rashkovsky, Victor G. Kramer, Sandra J. Lee, Mick Correll, Francis J. Novembre, François Villinger, Welkin E. Johnson, Agneta von Gegerfelt, Barbara K. Felber, Ruth M. Ruprecht
Software Mentions: 1
Published: about 11 years ago

10.1186/s12885-015-1827-3

Gene expression profiling analysis of CRTC1-MAML2 fusion oncogene-induced transcriptional program in human mucoepidermoid carcinoma cells
Cited by: 28
Author(s): Jie Chen, Jianliang Li, Zirong Chen, James D. Griffin, Lizi Wu
Software Mentions: 1
Published: about 9 years ago

10.1186/s12885-021-08212-w

SNX10 and PTGDS are associated with the progression and prognosis of cervical squamous cell carcinoma
Cited by: 8
Author(s): Pinping Jiang, Ying Cao, Feng Gao, Wei Sun, Jinhui Liu, Ziyan Ma, Minhao Xie, Shilong Fu
Software Mentions: 1
Published: over 3 years ago

10.1007/s00432-020-03287-7

Microarray analysis of the expression profile of immune-related gene in rapid recurrence early-stage lung adenocarcinoma
Cited by: 9
Author(s): Jie Liu, Xia Yang, Liang Zhang, Bo Yang, Wenwang Rao, Mengxia Li, Nan Dai, Yuxin Yang, Chengyuan Qian, Lei Zhang, Hualiang Xiao, Dong Wang
Software Mentions: 1
Published: over 4 years ago

10.1002/jcb.27181

MiR‐145 affected the circular RNA expression in prostate cancer LNCaP cells
Cited by: 27
Author(s): Jinhua He, Zeping Han, Jiacheng Zhou, Wei Ming Chen, Yubing Lv, Men Ling He, Yuguang Li
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0094621

Evaluation of Cancer Stem Cell Markers CD133, CD44, CD24: Association with AKT Isoforms and Radiation Resistance in Colon Cancer Cells
Cited by: 172
Author(s): Sara Häggblad Sahlberg, Diana Spiegelberg, Bengt Glimelius, Bo Stenerlöw, Marika Nestor
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2407-9-321

Identification of Achaete-scute complex-like 1 (ASCL1) target genes and evaluation of DKK1 and TPH1 expression in pancreatic endocrine tumours
Cited by: 10
Author(s): Térèse Johansson, Gunnar Westin, Britt Skogseid
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0078931

Transcriptional Activity, Chromosomal Distribution and Expression Effects of Transposable Elements in Coffea Genomes
Cited by: 30
Author(s): Fabrício Ramon Lopes, Daudi Jjingo, Carlos R. M. da Silva, Alan Carvalho Andrade, Pierre Marraccini, J. B. Teixeira, Marcelo Falsarella Carazzolle, Gonçalo Amarante Guimarães Pereira, Luiz Filipe Protásio Pereira, André Luís Laforga Vanzela, Lu Wang, King Jordan, Claudia M. A. Carareto
Software Mentions: 1
Published: about 11 years ago

10.1083/jcb.201704115

Regulation of lipid droplets by metabolically controlled Ldo isoforms
Cited by: 73
Author(s): Vítor Teixeira, Lisa Johnsen, Fernando Martínez-Montañés, Alexandra Grippa, Laura Buxó, Fátima-Zahra Idrissi, Christer S. Ejsing, Pedro Carvalho
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0050682

Genome-Wide Analysis of the Pho Regulon in a pstCA Mutant of Citrobacter rodentium
Cited by: 9
Author(s): Catherine Cheng, Matthew J. Wakefield, Jiyeon Yang, Marija Tauschek, Roy M. Robins-Browne
Software Mentions: 1
Published: almost 12 years ago

10.1111/jcmm.12616

Allergenic Can f 1 and its human homologue Lcn-1 direct dendritic cells to induce divergent immune responses
Cited by: 7
Author(s): Beate Posch, Christian Irsara, Fabian S. Gamper, M. Herrmann, Daniel Bindreither, Dietmar Fuchs, Norbert Reider, Bernhard Redl, Christine Heufler
Software Mentions: 1
Published: over 9 years ago

10.1111/jcmm.12667

Complement inhibition decreases early fibrogenic events in the lung of septic baboons
Cited by: 33
Author(s): Robert Silasi‐Mansat, Hua Zhu, Constantin Georgescu, Narcis I. Popescu, Ravi S. Keshari, G. Peer, Cristina Lupu, Fletcher B. Taylor, H. Anne Pereira, Gary T. Kinasewitz, John D. Lambris, Florea Lupu
Software Mentions: 1
Published: about 9 years ago

10.1111/jcmm.13249

Perfusion of isolated rat kidney with Mesenchymal Stromal Cells/Extracellular Vesicles prevents ischaemic injury
Cited by: 87
Author(s): Marilena Gregorini, Valeria Corradetti, Eleonora Francesca Pattonieri, Chiara Rocca, Samantha Milanesi, Andréa Peloso, Silvana Canevari, Loris De Cecco, Matteo Dugo, Maria Antonietta Avanzini, Melissa Mantelli, Marcello Maestri, Pasquale Esposito, Stefania Bruno, Carmelo Libetta, Antonio Dal Canton, Teresa Rampino
Software Mentions: 1
Published: over 7 years ago

10.1111/jcmm.13640

A panel consisting of three novel circulating lncRNAs, is it a predictive tool for gastric cancer?
Cited by: 22
Author(s): Jingjing Liu, Jiajun Wang, Yongxi Song, Bin Ma, Junlong Luo, Zhongran Ni, Peng Gao, Jingwei Sun, Jiang Zhao, Xiaowan Chen, Zhenning Wang
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.13620

Up‐regulation of miR‐10b‐3p promotes the progression of hepatocellular carcinoma cells via targeting <scp>CMTM</scp> 5 
Cited by: 24
Author(s): Lina Guan, Degang Ji, Na Liang, Shuo Li, Baozhen Sun
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.13684

Dysregulated circRNAs in plasma from active tuberculosis patients
Cited by: 34
Author(s): Zhengjun Yi, Kunshan Gao, Ruifang Li, Yurong Fu
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.13856

Long non‐coding <scp>RNA CRNDE</scp> promotes the proliferation, migration and invasion of hepatocellular carcinoma cells through miR‐217/<scp>MAPK</scp>1 axis
Cited by: 55
Author(s): Haihao Wang, Jun Ke, Qiannan Guo, Kan‐Paatib Barnabo Nampoukime, Pei-Wen Yang, Ke Ma
Software Mentions: 1
Published: about 6 years ago

10.18632/aging.102111

Genetic polymorphisms and transcription profiles associated with intracranial aneurysm: a key role for NOTCH3
Cited by: 2
Author(s): Mengqi Li, Xinlong Dong, Shi Chen, Weihan Wang, Chao Yang, Bochuan Li, Degang Liang, Weidong Yang, Xiaozhi Liu, Xinyu Yang
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.14078

MicroRNA‐488 inhibits endometrial glandular epithelial cell proliferation, migration, and invasion in endometriosis mice via Wnt by inhibiting FZD7
Cited by: 26
Author(s): Hui Zhu, Xi-Xia Cao, Juan Liu, Hua Hua
Software Mentions: 1
Published: almost 6 years ago

10.1111/jcmm.14426

Comprehensive proteogenomic analysis of human embryonic and induced pluripotent stem cells
Cited by: 11
Author(s): Elvira Immacolata Parrotta, Stefania Scalise, Domenico Taverna, Maria Teresa De Angelis, G. B. De Sarro, Marco Gaspari, Gianluca Santamaria, Giovanni Cuda
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.14402

MicroRNA‐539 functions as a tumour suppressor in prostate cancer via the TGF‐β/Smad4 signalling pathway by down‐regulating DLX1
Cited by: 12
Author(s): Bin Sun, Yingying Fan, Aijun Yang, Lunan Liang, Jinghe Cao
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.14079

MicroRNA‐351 eases insulin resistance and liver gluconeogenesis via the PI3K/AKT pathway by inhibiting FLOT2 in mice of gestational diabetes mellitus
Cited by: 50
Author(s): Shuhong Chen, Xiao‐Nan Liu, Yan Peng
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20246283

Genetic Programs Driving Oncogenic Transformation: Lessons from In Vitro Models
Cited by: 6
Author(s): Eros Di Giorgio, Harikrishnareddy Paluvai, Raffaella Picco, Claudio Brancolini
Software Mentions: 1
Published: almost 5 years ago

10.1111/jcmm.14552

Up‐regulated CST5 inhibits bone resorption and activation of osteoclasts in rat models of osteoporosis via suppression of the NF‐κB pathway
Cited by: 11
Author(s): Fei Wang, Chuanzhu Zhang, Wei Ge, Guoqiang Zhang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0088844

Is Transcriptomic Regulation of Berry Development More Important at Night than During the Day?
Cited by: 38
Author(s): Markus Rienth, Laurent Torregrosa, Mary T. Kelly, Nathalie Luchaire, Anne Pellegrino, Jérôme Grimplet, Charles Romieu
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0118198

A Regression-Based Differential Expression Detection Algorithm for Microarray Studies with Ultra-Low Sample Size
Cited by: 7
Author(s): Daniel Vasiliu, Samuel Clamons, Molly J. McDonough, Brian Rabe, Margaret S. Saha
Software Mentions: 1
Published: over 9 years ago

10.1111/jcmm.14537

PON1 hypermethylation is associated with progression of renal cell carcinoma
Cited by: 8
Author(s): Xin Li, Qian Yu
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.14582

Elevated hsa‐miR‐590‐3p expression down‐regulates HMGB2 expression and contributes to the severity of IgA nephropathy
Cited by: 9
Author(s): Yunkai Zhai, Yuanyuan Qi, Xiaoyan Long, Dou Yu, Dong Li, Genyang Cheng, Jing Xiao, Zhangsuo Liu, Zhanzheng Zhao
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0066229

Transcriptional Analysis Reveals Gender-Specific Changes in the Aging of the Human Immune System
Cited by: 51
Author(s): Saara Marttila, Juulia Jylhävä, Tapio Nevalainen, Matti Nykter, Marja Jylhä, Antti Hervonen, Liina Tserel, Pärt Peterson, Mikko Hurme
Software Mentions: 1
Published: over 11 years ago

10.1111/jcmm.14766

Pancreatic cancer cell–derived exosomal microRNA‐27a promotes angiogenesis of human microvascular endothelial cells in pancreatic cancer via BTG2
Cited by: 62
Author(s): Dan Shang, Chao Xie, Jin Hu, Jinru Tan, Yufeng Yuan, Zhisu Liu, Zhiyong Yang
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0080741

Prognostic Value of PLAGL1-Specific CpG Site Methylation in Soft-Tissue Sarcomas
Cited by: 12
Author(s): Anne-Lise Peille, Véronique Brouste, Audrey Kauffmann, Pauline Lagarde, Valérie Le Morvan, Jean‐Michel Coindre, Frédéric Chibon, Lucie Bresson
Software Mentions: 1
Published: about 11 years ago

10.1111/jcmm.14875

Circular RNA hsa_circRNA_002178 silencing retards breast cancer progression via microRNA‐328‐3p‐mediated inhibition of COL1A1
Cited by: 62
Author(s): Ting Liu, Ping Ye, Yuanyuan Ye, Sen Lu, Baohui Han
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12885-020-07316-z

Interconnectivity between molecular subtypes and tumor stage in colorectal cancer
Cited by: 13
Author(s): Robert R.J. Coebergh van den Braak, Sanne ten Hoorn, Anieta M. Sieuwerts, Jurriaan B. Tuynman, Marcel Smid, Saskia M. Wilting, John W.M. Martens, Cornelis J.A. Punt, John A. Foekens, Jan Paul Medema, Jan N.M. IJzermans, Louis Vermeulen
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0149896

Prediction of Candidate Drugs for Treating Pancreatic Cancer by Using a Combined Approach
Cited by: 6
Author(s): Yanfen Ma, Jian Hu, Ning Zhang, Xinran Dong, Ying Liu, Bo Yang, Weidong Tian, Xiaoqin Wang
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms20246296

Irradiated Human Fibroblasts as a Substitute Feeder Layer to Irradiated Mouse 3T3 for the Culture of Human Corneal Epithelial Cells: Impact on the Stability of the Transcription Factors Sp1 and NFI
Cited by: 6
Author(s): Gaëtan Le‐Bel, Sergio Cortez Ghio, Louis-Philippe Guérin, Francis Bisson, Lucie Germain, Sylvain L. Guérin
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0142646

Dynamic Bayesian Network Modeling of the Interplay between EGFR and Hedgehog Signaling
Cited by: 15
Author(s): Holger Fröhlich, Gloria Bahamondez, Frank Götschel, Ulrike Korf
Software Mentions: 1
Published: about 9 years ago

10.18632/aging.203158

Comprehensive signature analysis of drug metabolism differences in the White, Black and Asian prostate cancer patients
Cited by: 8
Author(s): Liu Yang, Jiawei Zhou, Cundong Liu, Jing Yang, De-Ying Liao, Zhen Liang, Xiao Xie, Qing Zhou, Kai Xue, Wenbing Guo, Ming Xia, Jiaju Zhou, Junjie Bao, Cheng Yang, Haifeng Duan, Hongyi Wang, Zhipeng Huang, Shan‐Chao Zhao, Ming-Kun Chen
Software Mentions: 1
Published: over 3 years ago

10.1111/jcmm.15424

Identification of circRNA and mRNA expression profiles and functional networks of vascular tissue in lipopolysaccharide‐induced sepsis
Cited by: 17
Author(s): Mu Wen Nie, Ye Chen Han, Zhu Jun Shen, Hongzhi Xie
Software Mentions: 1
Published: over 4 years ago

10.1111/jcmm.15438

UHRF1 predicts poor prognosis by triggering cell cycle in lung adenocarcinoma
Cited by: 6
Author(s): Zhenbo Tu, Xinzhou Deng, Shengqi Hou, Feng Ai, Qiuping Zhang
Software Mentions: 1
Published: over 4 years ago

Projects: bioconductor: limma

Papers Mentioning limma 7,776