Projects: bioconductor: limma
https://packages.ecosyste.ms/registries/bioconductor.org/packages/limma
Linear Models for Microarray Data
3 versions
Latest release: almost 3 years ago
314 dependent packages
4,663,292 downloads total
Science Score: 78/100
Starting Score: 100 points
Bonuses:
-
+8
Academic maintainer emails
1 maintainers with academic email addresses
Penalties:
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-30
Corporate indicators
1 corporate/proprietary indicators found
Very Likely Science (78)
Papers Mentioning limma 7,776
10.3390/medicina55090564
Biomarker Potential of Plasma MicroRNA-150-5p in Prostate CancerCited by: 19
Author(s): Ionuț Andrei Păunescu, Răzvan Bardan, Anca Marcu, Diana Nițușcă, Alis Dema, Șerban Negru, Ovidiu Bălăcescu, Loredana Bălăcescu, A. Cumpanas, Ioan Ovidiu Sîrbu, Bogdan Petruţ, Edward Șeclăman, Cătălin Marian
Software Mentions: 1
Published: about 7 years ago
10.1002/jbm4.10050
Molecular Phenotyping of Telomerized Human Bone Marrow Skeletal Stem Cells Reveals a Genetic Program of Enhanced Proliferation and Maintenance of Differentiation ResponsesCited by: 20
Author(s): Natalie A. Twine, Linda Harkness, James Adjaye, Abdullah Aldahmash, Marc R. Wilkins, Moustapha Kassem
Software Mentions: 1
Published: over 8 years ago
10.1002/jbm4.10465
<scp>EphA2</scp> Is a Clinically Relevant Target for Breast Cancer Bone Metastatic DiseaseCited by: 1
Author(s): David Vaught, Alyssa R. Merkel, Conor C. Lynch, James Edwards, Mohammed Noor Tantawy, Timothy Hilliard, Shan Wang, Todd E. Peterson, Rachelle W. Johnson, Julie A. Sterling, Dana M. Brantley-Sieders
Software Mentions: 1
Published: over 5 years ago
10.1007/s00204-020-02808-0
Perfluorooctanoic acid (PFOA), perfluorooctane sulfonic acid (PFOS), and perfluorononanoic acid (PFNA) increase triglyceride levels and decrease cholesterogenic gene expression in human HepaRG liver cellsCited by: 43
Author(s): Jochem Louisse, Deborah Rijkers, Geert Stoopen, Aafke W. F. Janssen, Martijn Staats, L.A.P. Hoogenboom, Sander Kersten, Ad Peijnenburg
Software Mentions: 1
Published: about 6 years ago
10.1155/2015/737310
Role of Calprotectin as a Modulator of the IL27-Mediated Proinflammatory Effect on Endothelial CellsCited by: 12
Author(s): Susann Antonia Dorosz, Aurélien Ginolhac, Thilo Kähne, Michael Naumann, Thomas Sauter, Alexandre Salsmann, Jean-Luc Bueb
Software Mentions: 1
Published: over 11 years ago
10.1155/2013/437123
Stimulation of MMP-1 and CCL2 by NAMPT in PDL CellsCited by: 33
Author(s): Marjan Nokhbehsaim, Sigrun Eick, Andressa Vilas Boas Nogueira, Per Hoffmann, Stefan Herms, Holger Fröhlich, Søren Jepsen, Andreas Jäger, Joni Augusto Cirelli, James Deschner
Software Mentions: 1
Published: over 13 years ago
10.1007/s00204-016-1723-x
Model-based contextualization of in vitro toxicity data quantitatively predicts in vivo drug response in patientsCited by: 16
Author(s): Christoph Thiel, Henrik Cordes, Isabel Conde, José V. Castell, Lars M. Blank, Lars Kuepfer
Software Mentions: 1
Published: over 10 years ago
10.1016/j.mad.2019.111177
Ageing-associated changes in the expression of lncRNAs in human tissues reflect a transcriptional modulation in ageing pathwaysCited by: 23
Author(s): Saara Marttila, Kasit Chatsirisupachai, Daniel H. Palmer, João Pedro de Magalhães
Software Mentions: 1
Published: over 6 years ago
10.3390/md19020052
Marine Seagrass Extract of Thalassia testudinum Suppresses Colorectal Tumor Growth, Motility and Angiogenesis by Autophagic Stress and Immunogenic Cell Death PathwaysCited by: 11
Author(s): Ivones Hernández-Balmaseda, Idania Rodeiro Guerra, Ken Declerck, José Alfredo Herrera Isidrón, Claudina Pérez-Novo, Guy Van Camp, Olivier De Wever, Kethia González, Mayrel Labrada, Adriana Carr, Geovanni Dantas-Cassali, Diego Carlos dos Reis, Liván Delgado-Roche, Roberto Rafael Nuñez, René Delgado Hernández, Miguel D. Fernández, Miriam T. Paz-Lopes, Wim Vanden Berghe
Software Mentions: 1
Published: over 5 years ago
10.1007/s00335-018-9750-y
Of mice and men: the host response to influenza virus infectionCited by: 16
Author(s): Heike Kollmus, Carolin Pilzner, Sarah R. Leist, Mark T. Heise, Robert Geffers, Klaus Schughart
Software Mentions: 1
Published: over 8 years ago
10.1186/s12936-017-2099-y
Malaria vectors in the Democratic Republic of the Congo: the mechanisms that confer insecticide resistance in Anopheles gambiae and Anopheles funestusCited by: 36
Author(s): Luisa Nardini, Richard H. Hunt, Yael Dahan-Moss, Nanette Christie, Riann Christian, Maureen Coetzee, Lizette L. Koekemoer
Software Mentions: 1
Published: almost 9 years ago
10.1186/1476-511X-12-126
The effect of simvastatin on lipid droplets accumulation in human embryonic kidney cells and pancreatic cancer cellsCited by: 27
Author(s): Helena Gbelcová, Martin Švéda, Lucia Laubertová, Ivan Varga, Libor Vı́tek, Michal Kolář, Hynek Strnad, Jaroslav Zelenka, Daniel Böhmer, Tomáš Ruml
Software Mentions: 1
Published: about 13 years ago
10.1186/s12944-019-1131-3
Potential molecular mechanism of ACE gene at different time points in STEMI patients based on genome-wide microarray datasetCited by: 3
Author(s): Yao-Zong Guan, Rui-Xing Yin, Peng-Fei Zheng, Guo-Xiong Deng, Chunxiao Liu, Bi-Liu Wei
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12944-015-0072-8
Eicosapentaenoic and docosahexaenoic acid-enriched high fat diet delays the development of fatty liver in miceCited by: 25
Author(s): Nikulkumar Soni, Intawat Nookaew, Ann‐Sofie Sandberg, Britt G. Gabrielsson
Software Mentions: 1
Published: about 11 years ago
10.26508/lsa.201800153
Variants of<i>DNMT3A</i>cause transcript-specific DNA methylation patterns and affect hematopoiesisCited by: 16
Author(s): Tanja Božić, Joana Frobel, Annamarija Raić, Fabio Ticconi, Chao-Chung Kuo, Stefanie Heilmann‐Heimbach, Tamme W. Goecke, Martin Zenke, Edgar Jost, Ivan G. Costa, Wolfgang Wagner
Software Mentions: 1
Published: almost 8 years ago
10.26508/lsa.202101034
High levels of TFAM repress mammalian mitochondrial DNA transcription in vivoCited by: 29
Author(s): Nina A. Bonekamp, Min Jiang, Elisa Motori, Rodolfo Garcia Villegas, Camilla Koolmeister, Ilian Atanassov, Andrea Mesaros, Chan Bae Park, Nils‐Göran Larsson
Software Mentions: 1
Published: about 5 years ago
10.3390/life10100248
Novel Methylation Patterns Predict Outcome in Uveal MelanomaCited by: 4
Author(s): Sarah Tadhg Ferrier, Julia V. Burnier
Software Mentions: 1
Published: almost 6 years ago
10.3390/life11040320
Long Noncoding RNA NEAT1 as a Potential Candidate Biomarker for Prostate CancerCited by: 6
Author(s): Diana Nițușcă, Anca Marcu, Alis Dema, Loredana Bălăcescu, Ovidiu Bălăcescu, Răzvan Bardan, A. Cumpanas, Ioan Ovidiu Sîrbu, Bogdan Petruţ, Edward Șeclăman, Cătălin Marian
Software Mentions: 1
Published: over 5 years ago
10.1038/leu.2013.362
Epimutations mimic genomic mutations of DNMT3A in acute myeloid leukemiaCited by: 45
Author(s): Edgar Jost, Qiong Lin, Carola I. Weidner, Stefan Wilop, Melanie Hoffmann, Thomas Walenda, Mirle Schemionek, Oliver Herrmann, Martin Zenke, Tim H. Brümmendorf, Steffen Koschmieder, Wolfgang Wagner
Software Mentions: 1
Published: almost 13 years ago
10.1155/2010/621069
Molecular Characterization of the Onset and Progression of Colitis in Inoculated Interleukin-10 Gene-Deficient Mice: A Role for PPAR<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mi>α</mml:mi></mml:math>Cited by: 18
Author(s): Bianca Knoch, Matthew P. G. Barnett, Janine M. Cooney, Warren C. McNabb, Diane Barraclough, William A. Laing, Shuotun Zhu, Zaneta A. Park, Paul Maclean, Scott O. Knowles, Nicole C. Roy
Software Mentions: 1
Published: over 16 years ago
10.1038/leu.2016.187
Citrullination of histone H3 drives IL-6 production by bone marrow mesenchymal stem cells in MGUS and multiple myelomaCited by: 37
Author(s): Gavin McNee, Katherine L. Eales, Wenbin Wei, D. R. Williams, Angelique Barkhuizen, David B. Bartlett, Sarah Essex, Seetharam Anandram, Andrew Filer, Paul Moss, Guy Pratt, Supratik Basu, Clare C. Davies, Daniel A. Tennant
Software Mentions: 1
Published: about 10 years ago
10.18632/aging.203056
Comprehensive analysis of the competing endogenous circRNA-lncRNA-miRNA-mRNA network and identification of a novel potential biomarker for hepatocellular carcinomaCited by: 28
Author(s): Lu Zhang, Haisu Tao, Li Jiang, Erlei Zhang, Huifang Liang, Bixiang Zhang
Software Mentions: 1
Published: over 5 years ago
10.1155/2020/1230513
Six-Gene Signature Associated with Immune Cells in the Progression of Atherosclerosis Discovered by Comprehensive Bioinformatics AnalysesCited by: 20
Author(s): Bin Zhao, Dan Wang, Yanling Liu, Xiaohong Zhang, Weiping Zheng, Jinling Wang, Ting Su, Linshan Duan, Yan Wang, Yuehua Zhang, Yilin Zhao
Software Mentions: 1
Published: about 6 years ago
10.1002/pd.5475
MicroRNA changes in maternal serum from pregnancies complicated by twin‐twin transfusion syndrome: A discovery studyCited by: 2
Author(s): Fiona L. Mackie, Barbara S. Baker, Andrew D Beggs, Agata Stodolna, RK Morris, Mark D. Kilby
Software Mentions: 1
Published: about 7 years ago
10.1155/2020/1615826
MFGE8, ALB, APOB, APOE, SAA1, A2M, and C3 as Novel Biomarkers for Stress CardiomyopathyCited by: 8
Author(s): Xiaoyu Pan, Zai-Wei Zhang
Software Mentions: 1
Published: about 6 years ago
10.1007/s00204-020-02697-3
Calretinin is a novel candidate marker for adverse ovarian effects of early life exposure to mixtures of endocrine disruptors in the ratCited by: 6
Author(s): Hanna Katarina Lilith Johansson, Terje Svingen, Julie Boberg, Paul A. Fowler, David Stead, Anne Marie Vinggaard, Panagiotis Filis
Software Mentions: 1
Published: over 6 years ago
10.1007/s00204-018-2239-3
Prenatal arsenic exposure is associated with increased plasma IGFBP3 concentrations in 9-year-old children partly via changes in DNA methylationCited by: 29
Author(s): Anda R. Gliga, Karin Engström, Maria Kippler, Helena Skröder, Sultan Ahmed, Marie Vahter, Rubhana Raqib, Karin Broberg
Software Mentions: 1
Published: over 8 years ago
10.1007/s00204-014-1279-6
From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effectsCited by: 70
Author(s): Nina V. Balmer, Stefanie Klima, Eugen Rempel, Violeta N. Ivanova, Raivo Kolde, Matthias K. Weng, Kesavan Meganathan, Margit Henry, Agapios Sachinidis, Michael R. Berthold, Jan G. Hengstler, Jörg Rahnenführer, Tanja Waldmann, Marcel Leist
Software Mentions: 1
Published: over 12 years ago
10.1155/2019/8490707
Identification of Differentially Expressed Genes and Signaling Pathways in Acute Myocardial Infarction Based on Integrated Bioinformatics AnalysisCited by: 31
Author(s): Da-qiu Chen, Xiuying Kong, Xuwei Shen, Maozhi Huang, J. P. Zheng, Jing Sun, Shuai Xu
Software Mentions: 1
Published: about 7 years ago
10.3390/proteomes3030266
Use of Aleuria alantia Lectin Affinity Chromatography to Enrich Candidate Biomarkers from the Urine of Patients with Bladder CancerCited by: 6
Author(s): Sarah R. Ambrose, Naheema S. Gordon, James Goldsmith, Wenbin Wei, Maurice P. Zeegers, Nicholas D. James, Margaret A. Knowles, Richard T. Bryan, Douglas G. Ward
Software Mentions: 1
Published: about 11 years ago
10.1186/1475-2840-11-15
Global gene expression profiling displays a network of dysregulated genes in non-atherosclerotic arterial tissue from patients with type 2 diabetesCited by: 30
Author(s): Vibe Skov, Steen Knudsen, Malene Olesen, Morten Hartvig Hansen, Lars Melholt Rasmussen
Software Mentions: 1
Published: over 14 years ago
10.1155/2020/7658921
Microarray Analysis of Small Extracellular Vesicle-Derived miRNAs Involved in Oxidative Stress of RPE CellsCited by: 4
Author(s): Ke Mao, Xiang Wu
Software Mentions: 1
Published: almost 6 years ago
10.3390/proteomes8040034
The Constitutive Proteome of Human Aqueous Humor and Race Specific AlterationsCited by: 7
Author(s): Sai Karthik Kodeboyina, Tae Jin Lee, Lara Churchwell, Lane Ulrich, Kathryn E. Bollinger, David Bogorad, Amy Estes, Wenbo Zhi, Shruti Sharma, Ashok Sharma
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12933-016-0353-1
Insulin resistance, endothelial function, angiogenic factors and clinical outcome in non-diabetic patients with chest pain without myocardial perfusion defectsCited by: 19
Author(s): Helena U. Westergren, Sara Svedlund, Remi A. Momo, Juuso Blomster, Karin Wåhlander, Erika Rehnström, Peter J. Greasley, Regina Fritsche‐Danielson, Jan Oscarsson, Li‐Ming Gan
Software Mentions: 1
Published: over 10 years ago
10.1155/2019/8645840
The Expression Profile of MicroRNAs in Small and Large Abdominal Aortic AneurysmsCited by: 13
Author(s): Václava Černá, Pavel Ostašov, Pavel Pitule, Jiří Moláček, Vladislav Třeška, Martin Pešta
Software Mentions: 1
Published: almost 7 years ago
10.1098/rsos.150011
New insights for<i>Drosophila</i>GAGA factor in larvaeCited by: 6
Author(s): Marta Blanch, David Piñeyro, Jordi Bernués
Software Mentions: 1
Published: over 11 years ago
10.1007/s00204-020-02779-2
Hepatotoxic pyrrolizidine alkaloids induce DNA damage response in rat liver in a 28-day feeding studyCited by: 24
Author(s): Johanna Ebmeyer, Josef Daniel Rasinger, Jan G. Hengstler, Dirk Schaudien, Otto Creutzenberg, Alfonso Lampen, Albert Braeuning, Stefanie Hessel‐Pras
Software Mentions: 1
Published: over 6 years ago
10.1098/rsos.200701
Ectopic fat accumulation in human astrocytes impairs insulin actionCited by: 6
Author(s): Martin Heni, Sabine S. Eckstein, Jens Schittenhelm, Anja Böhm, Norbert Hogrefe, Martin Irmler, Johannes Beckers, Martin Hrabé de Angelis, Hans‐Ulrich Häring, Andreas Fritsche, Harald Staiger
Software Mentions: 1
Published: about 6 years ago
10.1186/1748-717X-8-296
Changes in circulating microRNAs after radiochemotherapy in head and neck cancer patientsCited by: 84
Author(s): Isolde Summerer, Maximilian Niyazi, Kristian Unger, Adriana Pitea, Verena Zangen, Julia Heß, Michael J. Atkinson, Claus Belka, Simone Moertl, Horst Zitzelsberger
Software Mentions: 1
Published: almost 13 years ago
10.1186/s13690-021-00588-2
Identification of a prognostic long noncoding RNA signature in lung squamous cell carcinoma: a population-based study with a mean follow-up of 3.5 yearsCited by: 7
Author(s): Rongjiong Zheng, Mengdi Zheng, Mingming Wang, Feijie Lu, Meiling Hu
Software Mentions: 1
Published: over 5 years ago
10.1007/s00403-014-1476-4
The effect of two endogenous retinoids on the mRNA expression profile in human primary keratinocytes, focusing on genes causing autosomal recessive congenital ichthyosisCited by: 13
Author(s): Hans Törmä, Anders Bergström, G. Ghiasifarahani, Berit Berne
Software Mentions: 1
Published: over 12 years ago
10.1007/s00401-019-02120-x
Antibody signatures in patients with histopathologically defined multiple sclerosis patternsCited by: 11
Author(s): Lidia Stork, David Ellenberger, Klemens Ruprecht, Markus Reindl, Tim Beißbarth, Tim Friede, Tania Kümpfel, Lisa Ann Gerdes, Mareike Gloth, Thomas Liman, Friedemann Paul, Wolfgang Brück, Imke Metz
Software Mentions: 1
Published: over 6 years ago
10.1155/2021/3925136
Decreased Spp1 Expression in Acute Myocardial Infarction after Ischemia and Reperfusion InjuryCited by: 4
Author(s): Ling Li, Jianghua Huang, Zongkai Zhao, Zheng Wen, Kang Li, Tiangang Ma, Lisui Zhang, Junmeng Zheng, Shi Liang
Software Mentions: 1
Published: about 5 years ago
10.3390/ijms22105225
Distinct Concentration-Dependent Molecular Pathways Regulate Bone Cell Responses to Cobalt and Chromium Exposure from Joint Replacement ProsthesesCited by: 4
Author(s): Karan M. Shah, Mark J. Dunning, Alison Gartland, JM Wilkinson
Software Mentions: 1
Published: over 5 years ago
10.1002/cam4.1484
Analysis of potential genes and pathways associated with the colorectal normal mucosa-adenoma-carcinoma sequenceCited by: 27
Author(s): Zhiyuan Wu, Zhen Liu, Weiting Ge, Jiawei Shou, Lixin You, Hongming Pan, Weidong Han
Software Mentions: 1
Published: over 8 years ago
10.1080/0886022X.2016.1244083
Identification of crucial miRNAs and the targets in renal cortex of hypertensive patients by expression profilesCited by: 12
Author(s): Guohua Wang, Lan Wu, Zhi Chen, Jinghui Sun
Software Mentions: 1
Published: almost 10 years ago
10.1080/0886022X.2019.1669460
The <i>miR-15a-5p-XIST-CUL3</i> regulatory axis is important for sepsis-induced acute kidney injuryCited by: 43
Author(s): Guanhua Xu, Lujiao Mo, Channi Wu, Xiaoyuan Shen, Han Dong, Lixin Yu, Ping-Ying Pan, Kanda Pan
Software Mentions: 1
Published: over 7 years ago
10.1186/s12958-015-0010-7
Global gene expression in granulosa cells of growing, plateau and atretic dominant follicles in cattleCited by: 49
Author(s): Annie Girard, Isabelle Dufort, Gabriel Douville, Marc‐André Sirard
Software Mentions: 1
Published: over 11 years ago
10.1128/AEM.00638-16
Pichia pastoris Exhibits High Viability and a Low Maintenance Energy Requirement at Near-Zero Specific Growth RatesCited by: 42
Author(s): Corinna Rebnegger, Tim Vos, Alexandra B. Graf, Minoska Valli, Jack T. Pronk, Pascale Daran‐Lapujade, Diethard Mattanovich
Software Mentions: 1
Published: about 10 years ago
10.1186/s12958-019-0546-z
Analysis of key genes and their functions in placental tissue of patients with gestational diabetes mellitusCited by: 9
Author(s): Yuxia Wang, Haifeng Yu, Fangmei Liu, Xiue Song
Software Mentions: 1
Published: almost 7 years ago
10.3390/ijms22115547
Mutant p53 Mediates Sensitivity to Cancer Treatment Agents in Oesophageal Adenocarcinoma Associated with MicroRNA and SLC7A11 ExpressionCited by: 7
Author(s): Ann-Kathrin Eichelmann, George C. Mayne, Karen Chiam, Steven L. Due, Isabell Bastian, Frederike Butz, Tingting Wang, Pamela J. Sykes, Nicholas J. Clemons, David S. Liu, Michael Michael, Christos S. Karapetis, Richard Hummel, David I. Watson, Damian J. Hussey
Software Mentions: 1
Published: over 5 years ago
10.1186/s12958-021-00760-x
TMT-based proteomic and bioinformatic analyses of human granulosa cells from obese and normal-weight female subjectsCited by: 9
Author(s): Chenchen Si, Nan Wang, Mingjie Wang, Yue Liu, Zhihong Niu, Zhide Ding
Software Mentions: 1
Published: over 5 years ago
10.1155/2020/6634247
Development and Validation of a Nine-Redox-Related Long Noncoding RNA Signature in Renal Clear Cell CarcinomaCited by: 41
Author(s): Qi‐Dong Xia, Xiufen Yang, Junlin Lu, Chen‐Qian Liu, Jian‐Xuan Sun, Cong Liu, Shaogang Wang
Software Mentions: 1
Published: over 5 years ago
10.1530/REP-19-0587
Integrated analysis of mRNA and protein expression profiling in tubal endometriosisCited by: 5
Author(s): Hang Qi, Huiyu Zhang, Xiujuan Zhao, Ya Qin, Liang Guo, Xiaoqing He, Jian Zhang
Software Mentions: 1
Published: over 6 years ago
10.1530/REP-20-0677
CLDN1 regulates trophoblast apoptosis and proliferation in preeclampsiaCited by: 9
Author(s): Yuchen Zhang, Xiaoli Qin, Xiaoling Ma, Hui-Qin Mo, Quan Shi, Cheng-Xi Zhang, Xiaowei Wei, Xueqing Liu, Yan Zhang, Fu‐Ju Tian, Yi Lin
Software Mentions: 1
Published: over 5 years ago
10.1002/cam4.4142
An aberrant DNA methylation signature for predicting the prognosis of head and neck squamous cell carcinomaCited by: 2
Author(s): Dayang Chen, Mengmeng Wang, Ying Guo, Wei Wu, Xiang Ji, Xiaowei Dou, Huamei Tang, Zhi‐Hong Zong, Xiuming Zhang, Dan Xiong
Software Mentions: 1
Published: about 5 years ago
10.1002/cam4.3183
miR‐18a activates Wnt pathway in ER‐positive breast cancer and is associated with poor prognosisCited by: 18
Author(s): Madhumathy G. Nair, Jyothi S Prabhu, Aruna Korlimarla, Savitha Rajarajan, Parameswaran Hari, Roma Kaul, A. Alexander, Rohini Raghavan, B S Srinath, T.S. Sridhar
Software Mentions: 1
Published: over 6 years ago
10.1002/cam4.2171
An integrated analysis reveals the oncogenic function of lncRNA LINC00511 in human ovarian cancerCited by: 22
Author(s): Jing Wang, Yongju Tian, Hui Zheng, Yan Ding, Xiuli Wang
Software Mentions: 1
Published: over 7 years ago
10.3390/antiox10010025
Crosstalk between Long-Term Sublethal Oxidative Stress and Detrimental Inflammation as Potential Drivers for Age-Related Retinal DegenerationCited by: 11
Author(s): Lara Macchioni, Davide Chiasserini, Letizia Mezzasoma, Magdalena Davidescu, Pier Luigi Orvietani, Katia Fettucciari, Leonardo Salviati, Barbara Cellini, Ilaria Bellezza
Software Mentions: 1
Published: over 5 years ago
10.1186/1465-9921-10-2
Transcriptome profiling of primary murine monocytes, lung macrophages and lung dendritic cells reveals a distinct expression of genes involved in cell traffickingCited by: 29
Author(s): Zbigniew Zasłona, Jochen Wilhelm, Lidija Cakarova, Leigh M. Marsh, Werner Seeger, Jürgen Lohmeyer, Werner von Wulffen
Software Mentions: 1
Published: over 17 years ago
10.1002/cam4.1180
A comprehensive genome-wide analysis of long noncoding RNA expression profile in hepatocellular carcinomaCited by: 81
Author(s): Hongxia Cui, Yunxing Zhang, Qiu‐Jie Zhang, Wen-Ming Chen, Haibo Zhao, Jun Liang
Software Mentions: 1
Published: almost 9 years ago
10.1089/ars.2018.7551
Putative Role of Nuclear Factor-Kappa B But Not Hypoxia-Inducible Factor-1α in Hypoxia-Dependent Regulation of Oxidative Stress in Hematopoietic Stem and Progenitor CellsCited by: 7
Author(s): Camilla Halvarsson, Emma Rörby, Pernilla Eliasson, Stefan Lang, Shamit Soneji, Jan Ingvar Jönsson
Software Mentions: 1
Published: about 7 years ago
10.1002/cam4.4033
Regional and racial disparity in proximal gastric cancer survival outcomes 1996–2016: Results from SEER and China National Cancer Center databaseCited by: 10
Author(s): Lulu Zhao, Penghui Niu, Dongbing Zhao, Yingtai Chen
Software Mentions: 1
Published: over 5 years ago
10.1002/cam4.1710
Overexpression of KIF20A confers malignant phenotype of lung adenocarcinoma by promoting cell proliferation and inhibiting apoptosisCited by: 52
Author(s): Xia Zhao, Leilei Zhou, Xiaoyou Li, Jie Ni, Ping Chen, Rong Ma, Jianzhong Wu, Jifeng Feng
Software Mentions: 1
Published: about 8 years ago
10.1186/s12931-018-0816-x
The therapeutic effect of mesenchymal stem cells on pulmonary myeloid cells following neonatal hyperoxic lung injury in miceCited by: 23
Author(s): Ali Al-Rubaie, Andrea F Wise, Foula Sozo, Robert De Matteo, Chrishan S. Samuel, Richard Harding, Sharon D. Ricardo
Software Mentions: 1
Published: over 8 years ago
10.1186/s12931-019-1062-6
Arginase impairs hypoxic pulmonary vasoconstriction in murine endotoxemiaCited by: 6
Author(s): Bodil Petersen, Cornelius Busch, Grigorij Schleifer, Dominik Schaack, Felix Lasitschka, Kenneth D. Bloch, Donald B. Bloch, Fumito Ichinose
Software Mentions: 1
Published: over 7 years ago
10.1002/cam4.2492
Risk stratification for lung adenocarcinoma on EGFR and TP53 mutation status, chemotherapy, and PD‐L1 immunotherapyCited by: 8
Author(s): Chih‐Hsun Wu, Ming‐Jing Hwang
Software Mentions: 1
Published: about 7 years ago
10.1002/cam4.190
Bronchial airway gene expression in smokers with lung or head and neck cancerCited by: 12
Author(s): Eric Van Dyck, Petr V. Nazarov, Arnaud Muller, Nathalie Nicot, Manon Bosseler, Sandrine Pierson, Kris Van Moer, Valérie Palissot, Céline Mascaux, U. Knolle, Vincent Ninane, Romain Nati, Roy M. Bremnes, Laurent Vallar, Guy Berchem, Marc Schlesser
Software Mentions: 1
Published: over 12 years ago
10.1186/s12931-019-1176-x
Wnt signaling regulates trans-differentiation of stem cell like type 2 alveolar epithelial cells to type 1 epithelial cellsCited by: 34
Author(s): Elhusseiny Mohamed Mahmud Abdelwahab, Judit Rapp, D. Feller, Veronika Csöngei, Szilárd Pál, Domokos Bartis, David Thickett, Judit E. Pongrácz
Software Mentions: 1
Published: about 7 years ago
10.18632/aging.103107
Identification and validation of the angiogenic genes for constructing diagnostic, prognostic, and recurrence models for hepatocellular carcinomaCited by: 9
Author(s): Jinyu Zhu, Bufu Tang, Jie Li, Yueli Shi, Minjiang Chen, Xiuling Lv, Miaomiao Meng, Qiaoyou Weng, Nannan Zhang, Kai Fan, Min Xu, Jiansong Ji
Software Mentions: 1
Published: over 6 years ago
10.18632/aging.203300
LncRNA CCAT1 promotes prostate cancer cells proliferation, migration, and invasion through regulation of miR-490-3p/FRAT1 axisCited by: 9
Author(s): Xiaowei Cai, Yiheng Dai, Peng Gao, Guanyu Ren, Dingcai Cheng, Bo Wang, Yi Wang, Jian Yu, Yueyao Du, Xizhi Wang, Boxin Xue
Software Mentions: 1
Published: about 5 years ago
10.1186/bcr2593
Dynamic changes in gene expression in vivo predict prognosis of tamoxifen-treated patients with breast cancerCited by: 39
Author(s): Karen Taylor, Andrew H. Sims, Liang Liang, Dana Faratian, Morwenna Muir, Graeme E. Walker, Barbara Kuske, J. M. Dixon, David Cameron, David J. Harrison, Simon P. Langdon
Software Mentions: 1
Published: over 16 years ago
10.1186/s13058-015-0668-y
Targeted Pten deletion plus p53-R270H mutation in mouse mammary epithelium induces aggressive claudin-low and basal-like breast cancerCited by: 21
Author(s): Sharon Wang, Jeff C. Liu, Danbi Kim, Alessandro Datti, Eldad Zacksenhaus
Software Mentions: 1
Published: over 10 years ago
10.1186/bcr2560
Transcriptome analyses of mouse and human mammary cell subpopulations reveal multiple conserved genes and pathwaysCited by: 357
Author(s): Elgene Lim, Di Wu, Bhupinder Pal, Toula Bouras, Marie Liesse Asselin-Labat, François Vaillant, Hideo Yagita, Geoffrey J. Lindeman, Gordon K. Smyth, Jane E. Visvader
Software Mentions: 1
Published: over 16 years ago
10.1186/s13058-017-0861-2
The BRCA1ness signature is associated significantly with response to PARP inhibitor treatment versus control in the I-SPY 2 randomized neoadjuvant settingCited by: 57
Author(s): Tesa Severson, Denise M. Wolf, Christina Yau, Justine K. Peeters, Diederik Wehkam, Philip C. Schouten, Suet-Feung Chin, Ian J. Majewski, Magali Michaut, Astrid Bosma, Bernard Pereira, Tycho Bismeijer, Lodewyk Wessels, Carlos Caldas, René Bernards, Iris Simón, Annuska M. Glas, Sabine C. Linn, Laura J. van’t Veer
Software Mentions: 1
Published: about 9 years ago
10.1136/annrheumdis-2018-214539
Synovial cellular and molecular signatures stratify clinical response to csDMARD therapy and predict radiographic progression in early rheumatoid arthritis patientsCited by: 177
Author(s): Frances Humby, Myles Lewis, Nandhini Ramamoorthi, Jason A. Hackney, Michael R. Barnes, Michèle Bombardieri, Audi Setiadi, Stephen Kelly, F Bene, Maria DiCicco, Sudeh Riahi, Vidalba Rocher, Nora Ng, Ilias Lazarou, Rebecca Hands, Désirée van der Heijde, Robert Landewé, Annette H M van der Helm-van Mil, Alberto Cauli, Iain B. McInnes, Christopher D. Buckley, Ernest Choy, Peter Taylor, Michael J. Townsend, Costantino Pitzalis
Software Mentions: 1
Published: over 7 years ago
10.1186/s12977-018-0409-2
A CRISPR screen for factors regulating SAMHD1 degradation identifies IFITMs as potent inhibitors of lentiviral particle deliveryCited by: 20
Author(s): Ferdinand Roesch, Molly OhAinle, Michael Emerman
Software Mentions: 1
Published: over 8 years ago
10.1080/07853890.2021.1966087
Screening differentially expressed genes between endometriosis and ovarian cancer to find new biomarkers for endometriosisCited by: 8
Author(s): Zhenzhen Lu, Ying Gao
Software Mentions: 1
Published: over 5 years ago
10.1186/s13058-014-0437-3
Profiling the tyrosine phosphoproteome of different mouse mammary tumour models reveals distinct, model-specific signalling networks and conserved oncogenic pathwaysCited by: 13
Author(s): Naveid Ali, Jianmin Wu, Falko Hochgräfe, Howard Chan, Radhika Nair, Sunny Ye, Luxi Zhang, Ruth J. Lyons, Mark Pinese, Hong Ching Lee, Nicola J. Armstrong, Christopher J. Ormandy, Susan J. Clark, Alexander Swarbrick, Roger J. Daly
Software Mentions: 1
Published: about 12 years ago
10.1186/s13058-016-0717-1
Germline APOBEC3B deletion is associated with breast cancer risk in an Asian multi-ethnic cohort and with immune cell presentationCited by: 43
Author(s): Wei Wen, Jaslyn Sian-Siu Soo, Pui Yoke Kwan, Elaine Hong, Tsung Fei Khang, Shivaani Mariapun, Christine Shu Mei Lee, Siti Norhidayu Hasan, Pathmanathan Rajadurai, Cheng Har Yip, Nur Aishah Mohd Taib, Soo Hwang Teo
Software Mentions: 1
Published: over 10 years ago
10.1177/2472555220973597
CETSA MS Profiling for a Comparative Assessment of FDA-Approved Antivirals Repurposed for COVID-19 Therapy Identifies TRIP13 as a Remdesivir Off-TargetCited by: 11
Author(s): Tomas Friman, Alexey Chernobrovkin, Daniel Martinez Molina, Laurence H. Arnold
Software Mentions: 1
Published: over 5 years ago
10.1186/bcr3673
Mesenchymal precursor cells maintain the differentiation and proliferation potentials of breast epithelial cellsCited by: 18
Author(s): Stephan Duss, Heike Brinkhaus, Adrian Britschgi, Erik Cabuy, Daniel M. Frey, Dirk J. Schaefer, Mohamed Bentires‐Alj
Software Mentions: 1
Published: over 12 years ago
10.3390/nu10050547
A Vitamin E-Enriched Antioxidant Diet Interferes with the Acute Adaptation of the Liver to Physical Exercise in MiceCited by: 8
Author(s): Miriam Hoene, Martin Irmler, Johannes Beckers, Martin Hrabé de Angelis, Hans‐Ulrich Häring, Cora Weigert
Software Mentions: 1
Published: over 8 years ago
10.1080/21623945.2019.1649578
Identification of biomarkers, pathways and potential therapeutic agents for white adipocyte insulin resistance using bioinformatics analysisCited by: 16
Author(s): Yemin Zhang, Yuyang Zheng, Yalin Fu, Changhua Wang
Software Mentions: 1
Published: over 7 years ago
10.1186/s13058-015-0646-4
Puberty-specific promotion of mammary tumorigenesis by a high animal fat dietCited by: 22
Author(s): Mark D. Aupperlee, Yong Zhao, Ying Tan, Yuanchang Zhu, Ingeborg M. Langohr, Erin L. Kirk, Jason R. Pirone, Melissa A. Troester, Richard C. Schwartz, Sandra Z. Haslam
Software Mentions: 1
Published: almost 11 years ago
10.3390/ani10091680
Identification of the Key microRNAs and miRNA-mRNA Interaction Networks during the Ovarian Development of HensCited by: 8
Author(s): Jing Li, Chong Li, Qi Li, Wenting Li, Hong Li, Guoxi Li, Xiangtao Kang, Xiaojun Liu, Yadong Tian
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms22158205
Identification of an IL-22-Dependent Gene Signature as a Pharmacodynamic BiomarkerCited by: 1
Author(s): Julie Rae, Jason A. Hackney, Kevin Huang, Mary E. Keir, Ann Herman
Software Mentions: 1
Published: about 5 years ago
10.1186/bcr3460
Pharmacologic reversion of epigenetic silencing of the PRKD1promoter blocks breast tumor cell invasion and metastasisCited by: 76
Author(s): Sahra Borgés, Heike Döppler, Edith A. Perez, Cathy A. Andorfer, Zhifu Sun, Panos Z. Anastasiadis, E. Aubrey Thompson, Xochiquetzal J. Geiger, Peter Störz
Software Mentions: 1
Published: over 13 years ago
10.1186/bcr1834
Regulator of G-protein signalling 2 mRNA is differentially expressed in mammary epithelial subpopulations and over-expressed in the majority of breast cancersCited by: 27
Author(s): Matthew J. Smalley, Marjan Iravani, Maria Ignêz Leão, Anita Grigoriadis, Howard Kendrick, Tim Dexter, Kerry Fenwick, Joseph L. Regan, Kara Britt, Sarah McDonald, Christopher J. Lord, Alan Mackay, Alan Ashworth
Software Mentions: 1
Published: almost 19 years ago
10.1186/bcr2222
Gene expression profiling of the tumor microenvironment during breast cancer progressionCited by: 550
Author(s): Xiao‐Jun Ma, Sonika Dahiya, Elizabeth Richardson, Mark G. Erlander, Dennis Sgroi
Software Mentions: 1
Published: over 17 years ago
10.1186/s13058-020-01359-7
Activating transcription factor-2 (ATF2) is a key determinant of resistance to endocrine treatment in an in vitro model of breast cancerCited by: 13
Author(s): Athina Giannoudis, Mohammed Imad Malki, Bharath Rudraraju, Hisham Mohhamed, Suraj Menon, Triantafillos Liloglou, Simak Ali, Jason S. Carroll, Carlo Palmieri
Software Mentions: 1
Published: almost 6 years ago
10.1186/bcr1985
The estrogen and c-Myc target gene HSPC111 is over-expressed in breast cancer and associated with poor patient outcomeCited by: 30
Author(s): Alison J. Butt, C. Marcelo Sergio, Claire K. Inman, Luke R. Anderson, Catriona M. McNeil, Amanda J. Russell, Marco Nousch, Thomas Preiß, Andrew V. Biankin, Robert L. Sutherland, Elizabeth A. Musgrove
Software Mentions: 1
Published: over 18 years ago
10.1186/s13058-016-0729-x
Paternal programming of breast cancer risk in daughters in a rat model: opposing effects of animal- and plant-based high-fat dietsCited by: 39
Author(s): Camile Castilho Fontelles, Luiza Nicolosi Guido, Mariana Rosim, Fábia de Oliveira Andrade, Lü Jin, Jessica Inchauspe, Vanessa Pires, Inar Alves de Castro, Leena Hilakivi‐Clarke, Sônia de Assis, Thomas Prates Ong
Software Mentions: 1
Published: about 10 years ago
10.3390/brainsci11040435
Chronic Alcohol Use Induces Molecular Genetic Changes in the Dorsomedial Thalamus of People with Alcohol-Related DisordersCited by: 4
Author(s): Andreas-Christian Hade, Mari-Anne Philips, Ene Reimann, Toomas Jagomäe, Kattri‐Liis Eskla, Tanel Traks, Ele Prans, Sulev Kõks, Eero Vasar, Marika Väli
Software Mentions: 1
Published: over 5 years ago
10.3390/brainsci9100284
Overexpression of Macrophage Migration Inhibitory Factor and Its Homologue D-Dopachrome Tautomerase as Negative Prognostic Factor in NeuroblastomaCited by: 25
Author(s): Eugenio Cavalli, Emanuela Mazzon, Santa Mammana, Maria Sofia Basile, Salvo Danilo Lombardo, Katia Mangano, Placido Bramantı, Ferdinando Nicoletti, Paolo Fagone, Maria Cristina Petralia
Software Mentions: 1
Published: almost 7 years ago
10.1093/brain/awv039
Neuron-specific antioxidant OXR1 extends survival of a mouse model of amyotrophic lateral sclerosisCited by: 64
Author(s): Kevin X. Liu, Benjamin Edwards, Sheena Lee, Mattéa J. Finelli, Ben Davies, Kay E. Davies, Peter L. Oliver
Software Mentions: 1
Published: over 11 years ago
10.1111/bph.13773
Signalling mechanisms underlying doxorubicin and Nox2 NADPH oxidase-induced cardiomyopathy: involvement of mitofusin-2Cited by: 36
Author(s): Declan McLaughlin, Yifang Zhao, Karla O’Neill, Kevin Edgar, Philip D. Dunne, Anna M Kearney, David Grieve, Barbara McDermott
Software Mentions: 1
Published: over 9 years ago
10.1038/s41416-020-0788-8
Decreased vitamin C uptake mediated by SLC2A3 promotes leukaemia progression and impedes TET2 restorationCited by: 24
Author(s): Jun Liu, Junshik Hong, Heejoo Han, Jihyun Park, Dongchan Kim, Hyejoo Park, Myunggon Ko, Youngil Koh, Dong Yeop Shin, Sung Soo Yoon
Software Mentions: 1
Published: over 6 years ago
10.1038/s41416-019-0557-8
Tyrosine kinase inhibition to improve anthracycline-based chemotherapy efficacy in T-cell lymphomaCited by: 6
Author(s): Martina Magni, Giulia Biancon, Sara Rizzitano, Alessandra Cavanè, Chiara Paolizzi, Matteo Dugo, Paolo Corradini, Cristiana Carniti
Software Mentions: 1
Published: about 7 years ago
10.17305/bjbms.2020.5617
Development and validation of a ferroptosis-related lncRNAs prognosis signature in colon cancerCited by: 39
Author(s): Hua Cheng, Zhi Cheng Zhuang, Yong Wu, Yi Yi Zhang, Xing Liu, Jin Fu Zhuang, Yuan Yang, Yuan Gao, Bin Chen, Guo xian Guan
Software Mentions: 1
Published: over 5 years ago