bioconductor: limma | Projects | Ecosyste.ms: Papers

10.1155/2021/6661625

Identification of Immune-Related Prognostic Biomarkers Associated with HPV-Positive Head and Neck Squamous Cell Carcinoma
Cited by: 6
Author(s): Yifei Chen, Jin Nie, Xiangsheng Li, Tao Fan, Xiaowen Deng, Dan Liang, Gui‐Lin Song
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0123047

Dose-Dependent Effects of Morphine Exposure on mRNA and microRNA (miR) Expression in Hippocampus of Stressed Neonatal Mice
Cited by: 17
Author(s): Ryan M. McAdams, Ronald J. McPherson, Richard P. Beyer, Theo K. Bammler, Frederico M. Farin, Sandra E. Juul
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0233445

Identification of feature risk pathways of smoking-induced lung cancer based on SVM
Cited by: 6
Author(s): Rongjun Chen, Jiaqi Lin
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0004563

Integrative Analysis of Epigenetic Modulation in Melanoma Cell Response to Decitabine: Clinical Implications
Cited by: 57
Author(s): Ruth Halaban, Michael Krauthammer, Mattia Pelizzola, Elaine Cheng, Daniela Kovacs, Mario Sznol, Stephan Ariyan, Deepak Narayan, Antonella Bacchiocchi, Annette M. Molinaro, Yuval Kluger, Min Deng, Nam Tran, Wengeng Zhang, Mauro Picardo, Jan J. Enghild
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-9-540

Microarray analysis identifies candidate genes for key roles in coral development
Cited by: 124
Author(s): Lauretta C. Grasso, John Maindonald, Stephen Rudd, David C. Hayward, Robert Saint, David J. Miller, Eldon E. Ball
Software Mentions: 1
Published: almost 18 years ago

10.1016/j.ebiom.2019.03.072

Identification of novel differentially methylated sites with potential as clinical predictors of impaired respiratory function and COPD
Cited by: 19
Author(s): Mairead Lesley Bermingham, Richard M Martin, Riccardo E. Marioni, Stewart W. Morris, Konrad Rawlik, Yanni Zeng, Archie Campbell, Paul Redmond, Heather C. Whalley, Mark Adams, Caroline Hayward, Ian J. Deary, David J. Porteous, Andrew M. McIntosh, Kathryn Evans
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0125228

Innate Responses Induced by Whole Inactivated Virus or Subunit Influenza Vaccines in Cultured Dendritic Cells Correlate with Immune Responses In Vivo
Cited by: 19
Author(s): Maaike Stoel, Jan Pool, Jacqueline de Vries-Idema, Fatiha Zaaraoui-Boutahar, M Bijl, Arno C. Andeweg, Jan Wilschut, Anke Huckriede
Software Mentions: 1
Published: over 11 years ago

10.15252/embj.2020106272

Cellular stress promotes NOD1/2‐dependent inflammation via the endogenous metabolite sphingosine‐1‐phosphate
Cited by: 32
Author(s): Gang Pei, Joanna Żyła, Lichun He, Pedro Moura-Alves, Heidrun Steinle, Philippe Saikali, Laura Lozza, Natalie E. Nieuwenhuizen, January Weiner, Hans-Joachim Mollenkopf, Kornelia Ellwanger, Christine Arnold, Mojie Duan, Yulia A. Dagil, Мikhail Pashenkov, Ivo Gomperts Boneca, Thomas A. Kufer, Anca Dorhoi, Stefan H. E. Kaufmann
Software Mentions: 1
Published: over 5 years ago

10.1155/2015/952184

Electroporated Antigen-Encoding mRNA Is Not a Danger Signal to Human Mature Monocyte-Derived Dendritic Cells
Cited by: 6
Author(s): Stefanie Hoyer, Kerstin F. Gerer, Isabell A. Pfeiffer, Sabrina Prommersberger, Sandra Höfflin, Tanushree Jaitly, Luca Beltrame, Duccio Cavalieri, Gerold Schuler, Julio Vera, Niels Schaft, Jan Dörrie
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0137696

Computational Identification of Post Translational Modification Regulated RNA Binding Protein Motifs
Cited by: 7
Author(s): Andrew S. Brown, Bidyut K. Mohanty, Philip H. Howe
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0077281

Mammosphere Formation in Breast Carcinoma Cell Lines Depends upon Expression of E-cadherin
Cited by: 166
Author(s): Juan Manuel Iglesias, Izaskun Beloqui, Francisco García‐García, Olatz Leis, Alejandro Vázquez-Martín, Arrate Eguiara, Sílvia Cufí, Pavon Andres, Javier A. Menendez, Joaquı́n Dopazo, Ángel G. Martín
Software Mentions: 1
Published: almost 13 years ago

10.15252/embj.201695476

Esrrb extinction triggers dismantling of naïve pluripotency and marks commitment to differentiation
Cited by: 26
Author(s): Nicola Festuccia, Florian Halbritter, Andrea Corsinotti, Alessia Gagliardi, Douglas Colby, Simon R. Tomlinson, Ian Chambers
Software Mentions: 1
Published: almost 8 years ago

10.15252/embj.201386874

Nuclear <scp>ARRB</scp> 1 induces pseudohypoxia and cellular metabolism reprogramming in prostate cancer
Cited by: 54
Author(s): Vincent Zecchini, Basetti Madhu, Roslin Russell, Nelma Pértega‐Gomes, Anne Y. Warren, Edoardo Gaude, Joana Borlido, Rory Stark, Heather Ireland-Zecchini, Roheet Bantval Rao, Helen E. Scott, Joan Boren, Charles E. Massie, Mohammad Asim, Kevin M. Brindle, John R. Griffiths, Christian Frezza, David E. Neal, Ian G. Mills
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0068464

An Improved Method for TAL Effectors DNA-Binding Sites Prediction Reveals Functional Convergence in TAL Repertoires of Xanthomonas oryzae Strains
Cited by: 80
Author(s): Álvaro L. Pérez‐Quintero, Luis M. Rodriguez-R, Alexis Dereeper, Carolina Martínez López, Ralf Koebnik, Boris Szurek, Sébastien Cunnac
Software Mentions: 1
Published: about 13 years ago

10.1002/emmm.201303123

Inhibition of phosphodiesterase‐4 promotes oligodendrocyte precursor cell differentiation and enhances <scp>CNS</scp> remyelination
Cited by: 45
Author(s): Yasir Ahmed Syed, Alexandra Baer, Matthias P. Hofer, Ginez A. González, Jon Rundle, Szymon Myrta, Jeffrey K. Huang, Chao Zhao, Moritz J. Rossner, Matthew Trotter, Gert Lubec, Robin J.M. Franklin, Mark R. Kotter
Software Mentions: 1
Published: almost 13 years ago

10.15252/emmm.201809960

Non‐canonical <scp>cM</scp> et regulation by vimentin mediates Plk1 inhibitor–induced apoptosis
Cited by: 16
Author(s): Ratnakar Singh, Shaohua Peng, Pavitra Viswanath, Vaishnavi Sambandam, Ли Шен, Xiayu Rao, Bingliang Fang, Jing Wang, Faye M. Johnson
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0074184

Expression Signature as a Biomarker for Prenatal Diagnosis of Trisomy 21
Cited by: 13
Author(s): Marija Volk, Aleš Maver, Luca Lovrečić, Peter Juvan, Borut Peterlin
Software Mentions: 1
Published: about 13 years ago

10.1002/emmm.201303581

HES6 drives a critical <scp>AR</scp> transcriptional programme to induce castration‐resistant prostate cancer through activation of an <scp>E</scp>2<scp>F</scp>1‐mediated cell cycle network
Cited by: 63
Author(s): Antonio Ramos-Montoya, Alastair Lamb, Roslin Russell, Thomas Carroll, Sarah Jurmeister, Núria Galeano-Dalmau, Charles E. Massie, Joan Boren, Hélène Bon, Vassiliki Théodorou, Maria Vias, Greg L. Shaw, Naomi L. Sharma, Helen Ross-Adams, Helen E. Scott, Sarah L. Vowler, William J. Howat, Anne Y. Warren, Richard Wooster, Ian G. Mills, David E. Neal
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0060051

FOXQ1, a Novel Target of the Wnt Pathway and a New Marker for Activation of Wnt Signaling in Solid Tumors
Cited by: 52
Author(s): Jon Christensen, Susanne Bentz, Thierry Sengstag, V. Prasad Shastri, Pascale Anderle
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-14-265

Simultaneous miRNA and mRNA transcriptome profiling of human myoblasts reveals a novel set of myogenic differentiation-associated miRNAs and their target genes
Cited by: 71
Author(s): Petr Dmitriev, Ana Barat, Anna Polesskaya, Mary J. O’Connell, Robert Thomas, Philippe Dessen, Thomas A. Walsh, Vladimir Lazar, Ahmed Turki, Gilles Carnac, Dalila Laoudj-Chenivesse, Marc Lipinski, Yegor S. Vassetzky
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0169286

Molecular Characteristics of High-Dose Melphalan Associated Oral Mucositis in Patients with Multiple Myeloma: A Gene Expression Study on Human Mucosa
Cited by: 10
Author(s): Mette Marcussen, Julie Støve Bødker, Henrik Bærbak Christensen, Preben Johansen, Søren Laurentius Nielsen, Ilse Christiansen, Olav J. Bergmann, Martin Bøgsted, Karen Dybkær, Mogens Vyberg, Hans Erik Johnsen
Software Mentions: 1
Published: over 9 years ago

10.15252/emmm.202012724

A novel P2X2‐dependent purinergic mechanism of enteric gliosis in intestinal inflammation
Cited by: 27
Author(s): Reiner Schneider, Patrick Leven, Tim R. Glowka, Ivan Kuzmanov, Mariola Lysson, Bianca Schneiker, Anna Miesen, Younis Baqi, Claudia Spanier, Iveta Grants, Elvio Mazzotta, Egina C. Villalobos-Hernández, Jörg C. Kalff, Christa E. Müller, Fedias L. Christofi, Sven Wehner
Software Mentions: 1
Published: almost 6 years ago

10.15252/emmm.201707814

Mutant <scp>CTNNB</scp> 1 and histological heterogeneity define metabolic subtypes of hepatoblastoma
Cited by: 35
Author(s): Stefania Crippa, Pierre‐Benoit Ancey, Jessica Vázquez, Paolo Angelino, Anne‐Laure Rougemont, Catherine Guettier, Vincent Zoete, Mauro Delorenzi, Olivier Michielin, Etienne Meylan
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0180660

A three-microRNA signature as a diagnostic and prognostic marker in clear cell renal cancer: An In Silico analysis
Cited by: 30
Author(s): Bin Liang, Jianying Zhao, Xuan Wang
Software Mentions: 1
Published: about 9 years ago

10.17179/excli2019-1893

Common transcriptional programs and the role of chemokine (C-C motif) ligand 20 (CCL20) in cell migration of cholangiocarcinoma.
Cited by: 3
Author(s): Hay Mar Win Maung, Waraporn Chan-On, Nawapol Kunkeaw, Prasong Khaenam
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0086296

Transcriptomic Analysis of Liquid Non-Sporulating Streptomyces coelicolor Cultures Demonstrates the Existence of a Complex Differentiation Comparable to That Occurring in Solid Sporulating Cultures
Cited by: 39
Author(s): Paula Yagüe, Antonio Rodríguez‐García, María Teresa López-García, Beatriz Rioseras, Juan F. Martı́n, Jesús Sánchez, Ángel Manteca
Software Mentions: 1
Published: over 12 years ago

10.1002/ece3.1565

Scaling nitrogen and carbon interactions: what are the consequences of biological buffering?
Cited by: 4
Author(s): David J. Weston, Alistair Rogers, Timothy J. Tschaplinski, Lee E. Gunter, Sara Jawdy, Nancy L. Engle, Lindsey E. Heady, Gerald A. Tuskan, Stan D. Wullschleger
Software Mentions: 1
Published: about 11 years ago

10.1002/ece3.1933

The transcriptomic basis of tissue‐ and nutrition‐dependent sexual dimorphism in the beetle Onthophagus taurus
Cited by: 17
Author(s): Cristina C. Ledón‐Rettig, Armin P. Moczek
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0135605

Next Generation Sequencing Analysis Reveals Segmental Patterns of microRNA Expression in Mouse Epididymal Epithelial Cells
Cited by: 42
Author(s): Brett Nixon, Simone J. Stanger, Bettina P. Mihalas, Jackson N. Reilly, Andy Anderson, Matthew D. Dun, Sonika Tyagi, Janet E. Holt, Eileen A. McLaughlin
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0179797

The RNA uridyltransferase Zcchc6 is expressed in macrophages and impacts innate immune responses
Cited by: 10
Author(s): Elyse Kozlowski, Gregory A. Wasserman, Marcos Morgan, Dónal O’Carroll, Nora-Guadalupe P. Ramirez, Suryaram Gummuluru, Jasmine Rah, Adam C. Gower, Michael H. Ieong, Lee J. Quinton, Joseph P. Mizgerd, Matthew R. Jones
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.13610

Membrane-bound ICAM-1 contributes to the onset of proinvasive tumor stroma by controlling acto-myosin contractility in carcinoma-associated fibroblasts
Cited by: 15
Author(s): Stéphanie Bonan, Jean Albrengues, Eloïse M. Grasset, Sanya-Eduarda Kužet, Nicolas Nottet, Isabelle Bourget, Thomas Bertero, Bernard Mari, Guerríno Meneguzzi, Cédric Gaggioli
Software Mentions: 1
Published: almost 10 years ago

10.1530/ERC-13-0222

IL6 sensitizes prostate cancer to the antiproliferative effect of IFNα2 through IRF9
Cited by: 25
Author(s): Holger H.H. Erb, Regina V Langlechner, Patrizia Moser, Florian Handle, Tineke Casneuf, Karin Verstraeten, Bettina Schlick, Georg Schäfer, Brett M. Hall, Kate Sasser, Zoran Čulig, Frédéric R. Santer
Software Mentions: 1
Published: about 13 years ago

10.1210/en.2014-1302

Repair-Related Activation of Hedgehog Signaling in Stromal Cells Promotes Intrahepatic Hypothyroidism
Cited by: 43
Author(s): Brittany N. Bohinc, Gregory A. Michelotti, Guanhua Xie, Herbert Pang, Ayako Suzuki, Cynthia D. Guy, Dawn Piercy, Leandi Krüger, Marzena Swiderska‐Syn, Mariana Verdelho Machado, Thiago A. Pereira, Ann Marie Zavacki, Manal F. Abdelmalek, Anna Mae Diehl
Software Mentions: 1
Published: almost 12 years ago

10.18632/oncotarget.10949

Prognostic value of molecular events from negative surgical margin of non-small-cell lung cancer
Cited by: 7
Author(s): Bangrong Cao, Feng Li, Dongfang Lu, Yan Liu, Yu Liu, Shu Guo, Ning Han, Xiangyang Liu, Yousheng Mao, Jie He, Shujun Cheng, Yanning Gao, Kaitai Zhang
Software Mentions: 1
Published: about 10 years ago

10.1186/1476-069X-10-5

In utero exposure to butyl benzyl phthalate induces modifications in the morphology and the gene expression profile of the mammary gland: an experimental study in rats
Cited by: 49
Author(s): Raquel Moral, Julia Santucci-Pereira, Thomas J. Wang, Irma H. Russo, Coral A. Lamartiniere, José Russo
Software Mentions: 1
Published: over 15 years ago

10.1186/s12940-016-0202-4

Long-term outdoor air pollution and DNA methylation in circulating monocytes: results from the Multi-Ethnic Study of Atherosclerosis (MESA)
Cited by: 57
Author(s): C. Gloria, Yongmei Liu, James W. MacDonald, R. Graham Barr, Kathleen Donohue, Mark Hensley, Lifang Hou, Charles E. McCall, Lindsay M. Reynolds, David S. Siscovick, Joel D. Kaufman
Software Mentions: 1
Published: almost 10 years ago

10.1289/ehp.8419

Proteomic Evaluation of Neonatal Exposure to 2,2′,4,4′,5-Pentabromodiphenyl Ether
Cited by: 68
Author(s): Henrik Alm, Birger Scholz, Celia Fischer, Kim Kultima, Henrik Viberg, Per Eriksson, Lennart Dencker, Michael Stigson
Software Mentions: 1
Published: over 20 years ago

10.1289/ehp.9556

Up-regulation of Tissue Factor in Human Pulmonary Artery Endothelial Cells after Ultrafine Particle Exposure
Cited by: 59
Author(s): Edward D. Karoly, Zhuowei Li, Lisa A. Dailey, Xhevahire Hyseni, Yuh‐Chin T. Huang
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pone.0031777

Endoplasmic Reticulum Stress-Sensing Mechanism Is Activated in Entamoeba histolytica upon Treatment with Nitric Oxide
Cited by: 55
Author(s): Julien Santi-Rocca, Spenser S. Smith, Christian Weber, Erika Pineda, Chung-Chau Hon, Emma Saavedra, Alfonso Olivos-García, Sandrine Rousseau, Marie‐Agnès Dillies, Jean‐Yves Coppée, Nancy Guillén
Software Mentions: 1
Published: over 14 years ago

10.1289/ehp.11647

One-Month Diesel Exhaust Inhalation Produces Hypertensive Gene Expression Pattern in Healthy Rats
Cited by: 54
Author(s): Reddy R. Gottipolu, J. Grace Wallenborn, Edward D. Karoly, Mette C. Schladweiler, Allen D. Ledbetter, Todd Krantz, William P. Linak, Abraham Nyska, Johnny A. Johnson, Ronald F. Thomas, Judy E. Richards, Richard H. Jaskot, Urmila P. Kodavanti
Software Mentions: 1
Published: over 17 years ago

10.1007/s11356-019-05350-4

Correlation between pri-miR-124 (rs531564) polymorphism and congenital heart disease susceptibility in Chinese population at two different altitudes: a case-control and in silico study
Cited by: 10
Author(s): Wenke Yang, Kang Yi, Hongmiao Yu, Yunhan Ding, Dehong Li, Wei Ye, Tao You, Xiaodong Xie
Software Mentions: 1
Published: over 7 years ago

10.1080/15592294.2020.1788325

Epigenome-wide cross-tissue correlation of human bone and blood DNA methylation – can blood be used as a surrogate for bone?
Cited by: 17
Author(s): Parvaneh Ebrahimi, Holger Luthman, Fiona McGuigan, Kristina Åkesson
Software Mentions: 1
Published: about 6 years ago

10.1080/15592294.2017.1367475

Variability of genome-wide DNA methylation and mRNA expression profiles in reproductive and endocrine disease related tissues
Cited by: 32
Author(s): Nilüfer Rahmioğlu, Alexander W. Drong, Helen Lockstone, Thomas T. Tapmeier, Karin Hellner, Merli Saare, Triin Laisk-Podar, Christine Dew, Emily Tough, George Nicholson, Maire Peters, Andrew P. Morris, Cecilia M. Lindgren, Christian M. Becker, Krina T. Zondervan
Software Mentions: 1
Published: almost 9 years ago

10.1093/infdis/jiy420

Impact of Zostavax Vaccination on T-Cell Accumulation and Cutaneous Gene Expression in the Skin of Older Humans After Varicella Zoster Virus Antigen–Specific Challenge
Cited by: 10
Author(s): Nayna Patel, Milica Vukmanovic‐Stejic, Mayte Suárez‐Fariñas, Emma S. Chambers, Daisy Sandhu, Judilyn Fuentes‐Duculan, Neil A. Mabbott, M.H.A. Rustin, James G. Krueger, Arne N. Akbar
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13072-019-0283-8

Aberrant methylation-mediated downregulation of lncRNA SSTR5-AS1 promotes progression and metastasis of laryngeal squamous cell carcinoma
Cited by: 30
Author(s): Baoshan Wang, Lei Zhao, Weiwei Chi, Huấn Cao, Weina Cui, Wenxia Meng
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0019556

Technical Variability Is Greater than Biological Variability in a Microarray Experiment but Both Are Outweighed by Changes Induced by Stimulation
Cited by: 26
Author(s): Penelope A Bryant, Gordon K. Smyth, Roy M. Robins-Browne, Nigel Curtis
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0118226

Selection of Reference Genes for qPCR- and ddPCR-Based Analyses of Gene Expression in Senescing Barley Leaves
Cited by: 39
Author(s): Agnieszka Żmieńko, Anna Samelak-Czajka, Michał Góralski, Ewa Sobieszczuk‐Nowicka, Piotr Kozlowski, Marek Figlerowicz
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0039126

Transcriptional Responses of Resistant and Susceptible Fish Clones to the Bacterial Pathogen Flavobacterium psychrophilum
Cited by: 51
Author(s): Christelle Langevin, M. Mar Blanco, Samuel Martín, Luc Jouneau, Jean‐François Bernardet, Armel Houel, Aurélie Lunazzi, Éric Duchaud, Christian Michel, Edwige Quillet, Pierre Boudinot
Software Mentions: 1
Published: over 14 years ago

10.18632/oncotarget.18255

Bromodomain inhibition shows antitumoral activity in mice and human luminal breast cancer
Cited by: 21
Author(s): Montserrat Pérez-Salvia, Laia Simó-Riudalbas, Pere Llinàs‐Arias, Laura M. Roa, Fernando Setién, Marta Soler, Manuel Castro de Moura, James E. Bradner, Eva González-Suárez, Cátia Moutinho, Manel Esteller
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0045899

Development, Characterization and Experimental Validation of a Cultivated Sunflower (Helianthus annuus L.) Gene Expression Oligonucleotide Microarray
Cited by: 28
Author(s): Paula Fernández, Marcelo Soria, David Blesa, Julio Dirienzo, Sebastián Moschen, Máximo Rivarola, Bernardo Clavijo, Sergio González, Lucila Peluffo, Dario Príncipi, Guillermo A. A. Dosio, Luis Aguirrezábal, Francisco García‐García, Ana Conesa, H. Esteban Hopp, Joaquı́n Dopazo, Ruth Amelia Heinz, Norma Paniego
Software Mentions: 1
Published: almost 14 years ago

10.1038/s41388-018-0277-1

Inhibition of GPR158 by microRNA-449a suppresses neural lineage of glioma stem/progenitor cells and correlates with higher glioma grades
Cited by: 20
Author(s): Ningning Li, Ying Zhang, Kastytis Šidlauskas, Matthew Ellis, Ivor H. Evans, Paul Frankel, Joanne Lau, Tedani El-Hassan, Loredana Guglielmi, Jessica Broni, Angela Richard-Loendt, Sebastian Brandner
Software Mentions: 1
Published: over 8 years ago

10.1128/EC.00335-13

High-Throughput Chemical Screening for Antivirulence Developmental Phenotypes in Trypanosoma brucei
Cited by: 9
Author(s): Paula MacGregor, Alasdair Ivens, Steven Shave, Iain T. Collie, David W. Gray, Manfred Auer, Keith R. Matthews
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0033284

Genome-Wide DNA Methylation Indicates Silencing of Tumor Suppressor Genes in Uterine Leiomyoma
Cited by: 102
Author(s): Antònia Navarro, Ping Yin, Diana Monsivais, Simon Lin, Pan Du, Jian Jun Wei, Serdar E. Bulun
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0035119

Seasonal Changes in Patterns of Gene Expression in Avian Song Control Brain Regions
Cited by: 42
Author(s): Christopher K. Thompson, John Meitzen, Kirstin Replogle, Jenny Drnevich, Karin Lent, Anne Marie Wissman, Federico M. Farin, Theo K. Bammler, Richard P. Beyer, David F. Clayton, David J. Perkel, Eliot A. Brenowitz
Software Mentions: 1
Published: over 14 years ago

10.1002/eji.201545789

Depletion of CD11c + cells in the CD11c.DTR model drives expansion of unique CD64 + Ly6C + monocytes that are poised to release TNF‐α
Cited by: 10
Author(s): S Sivakumaran, Stephen Henderson, Sophie Ward, Pedro M. Sousa, Teresa Manzo, Lei Zhang, Thomas Conlan, Terry K. Means, Maud d’Aveni, Olivier Hermine, Marie‐Thérèse Rubio, Ronjon Chakraverty, Clare Bennett
Software Mentions: 1
Published: almost 11 years ago

10.1002/eji.201948151

Deoxyguanosine is a TLR7 agonist
Cited by: 17
Author(s): Tamara Davenne, Anne Bridgeman, Rachel E. Rigby, Jan Rehwinkel
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40001-014-0057-5

Construction of microRNA and transcription factor regulatory network based on gene expression data in cardiomyopathy
Cited by: 3
Author(s): Lei Wang, Jihua Hu, Haijian Xing, Mengjia Sun, Juanli Wang, Qiang Jin, Hua Yang
Software Mentions: 1
Published: almost 12 years ago

10.1111/j.1460-9568.2011.07896.x

Differential gene expression in migratory streams of cortical interneurons
Cited by: 42
Author(s): Mary Antypa, Clare Faux, Gregor Eichele, John G. Parnavelas, William D. Andrews
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0006718

Identification of Keratinocyte Growth Factor as a Target of microRNA-155 in Lung Fibroblasts: Implication in Epithelial-Mesenchymal Interactions
Cited by: 190
Author(s): Nicolas Pottier, Thomas Maurin, B. Chevalier, Marie-Pierre Puisségur, Kévin Lebrigand, Karine Robbe-Sermesant, Thomas Bertero, Christian L. Lino Cardenas, Elisabeth Courcot, Géraldine Rios, Sandra Fourré, Jean-Marc Lo-Guidice, Brice Marcet, Bruno Cardinaud, Pascal Barbry, Bernard Mari
Software Mentions: 1
Published: about 17 years ago

10.1155/2017/8753815

The Significant Pathways and Genes Underlying the Colon Cancer Treatment by the Traditional Chinese Medicine PHY906
Cited by: 8
Author(s): Ziyuan Su, Chunyuan Zhou, Shaoyou Qin, Erna Jia, Zhaofei Wu
Software Mentions: 1
Published: over 9 years ago

10.1155/2021/3905367

Investigating the Mechanism of Scutellariae barbata Herba in the Treatment of Colorectal Cancer by Network Pharmacology and Molecular Docking
Cited by: 5
Author(s): Xiangjun Qi, Hongbin Xu, Peng Zhang, Guo-Ming Chen, Zhiqiang Chen, Caishan Fang, Lizhu Lin
Software Mentions: 1
Published: about 5 years ago

10.1155/2014/942196

Electroacupuncture Improves Trinitrobenzene Sulfonic Acid-Induced Colitis, Evaluated by Transcriptomic Study
Cited by: 11
Author(s): Tin-Yun Ho, Hsin-Yi Lo, De-Cheng Chao, Chia-Cheng Li, Jau-Jin Liu, Chi‐Tsai Lin, Chien-Yun Hsiang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0190334

Stage-specific IFN-induced and IFN gene expression reveal convergence of type I and type II IFN and highlight their role in both acute and chronic stage of pathogenic SIV infection
Cited by: 10
Author(s): Nadia Echebli, Nicolas Tchitchek, Stéphanie Dupuy, Timothée Bruel, Caroline Passaes, Nathalie Bosquet, Roger Le Grand, Christine Bourgeois, Benoît Favier, Rémi Cheynier, Olivier Lambotte, Bruno Vaslin
Software Mentions: 1
Published: over 8 years ago

10.1155/2015/917345

Gene Expression Profiling and Pathway Network Analysis Predicts a Novel Antitumor Function for a Botanical-Derived Drug, PG2
Cited by: 16
Author(s): Yi Chun Kuo, Chun-Houh Chen, Tsung Hsien Chuang, Wei Hua, Wey Jinq Lin, Wei-Hsiang Hsu, Peter Mu Hsin Chang, Shih-Kuang Hsu, Tse-Hung Huang, Cheng Yen Kao, Chi Ying F. Huang
Software Mentions: 1
Published: over 11 years ago

10.1155/2014/962343

A Study on the Effect of Neurogenesis and Regulation of GSK3β/PP2A Expression in Acupuncture Treatment of Neural Functional Damage Caused by Focal Ischemia in MCAO Rats
Cited by: 16
Author(s): Dan Luo, Xiao-Nong Fan, Congcong Ma, Tongtao Fan, Xiaoguang Wang, Nvzi Chang, Lingxin Li, Yanan Zhang, Zhi-Hong Meng, Shu Wang, Xuemin Shi
Software Mentions: 1
Published: over 12 years ago

10.1155/2013/471739

In VitroGlobal Gene Expression Analyses Support the Ethnopharmacological Use ofAchyranthes aspera
Cited by: 2
Author(s): Pochi R. Subbarayan, Malancha Sarkar, Lubov Nathanson, Nikesh Doshi, Balakrishna L. Lokeshwar, Bach Ardalan
Software Mentions: 1
Published: over 13 years ago

10.1155/2014/540580

Deer Antler Extract Improves Fatigue Effect through Altering the Expression of Genes Related to Muscle Strength in Skeletal Muscle of Mice
Cited by: 20
Author(s): Jaw‐Chyun Chen, Chien-Yun Hsiang, Yung‐Chang Lin, Tin-Yun Ho
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0213078

Differential expression of miRNAs in acute myeloid leukemia quantified by Nextgen sequencing of whole blood samples
Cited by: 13
Author(s): Aakriti Pandita, Poornima Ramadas, Aarati Poudel, Nibal Saad, Ankit Anand, Alina Basnet, Dongliang Wang, Frank A. Middleton, Diana M. Gilligan
Software Mentions: 1
Published: over 7 years ago

10.1155/2021/4738264

Effect of BuShen JiangZhi Recipe on Atherosclerosis in ApoE−/- Mice by Regulating the Expression of Anpep via mmu_circRNA_22187
Cited by: 0
Author(s): Yan Li, Qingling Jia, Hui Cao, Pingyi He, Xing Shen, Yan Huang, Chuan Chen, Dingzhu Shen
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/8859558

Constructing the Logical Regression Model to Predict the Target of Jianpi Jiedu Decoction in the Treatment of Hepatocellular Carcinoma
Cited by: 1
Author(s): Rongjie Zhang, Yan Chen, Ge Zhou, Baoguo Sun, Yue Li, Zexiong Chen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41388-018-0546-z

Regulation of human glioma cell migration, tumor growth, and stemness gene expression using a Lck targeted inhibitor
Cited by: 48
Author(s): John P. Zepecki, Kristin M. Snyder, Margot-Martinez Moreno, Eduardo Fajardo, András Fiser, Jennifer K. Ness, Atom Sarkar, Steven Toms, Nikos Tapinos
Software Mentions: 1
Published: almost 8 years ago

10.1155/2021/1860508

Effects of Reducing the South and Reinforcing the North Method on Inflammatory Injury Induced by Hyperlipidemia
Cited by: 1
Author(s): Hongjin Wu, Weiwei Dai, Libo Wang, Jie Zhang, Chenglong Wang
Software Mentions: 1
Published: almost 5 years ago

10.1155/2021/7257405

Application of Bioinformatics Methods to Identify Key Genes and Functions in Chronic Pelvic Pain
Cited by: 1
Author(s): Wenchao Sun, Qiji Ju
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0127003

Level of Fatty Acid Binding Protein 5 (FABP5) Is Increased in Sputum of Allergic Asthmatics and Links to Airway Remodeling and Inflammation
Cited by: 30
Author(s): Hille Suojalehto, Pia Anneli Sofia Kinaret, Maritta Kilpeläinen, Elina Toskala, Niina Ahonen, Henrik Wolff, Harri Alenius, Anne Puustinen
Software Mentions: 1
Published: over 11 years ago

10.1093/jxb/eru145

Heterografting with nonself rootstocks induces genes involved in stress responses at the graft interface when compared with autografted controls
Cited by: 85
Author(s): Sarah Jane Cookson, María José Clemente‐Moreno, Cyril Hévin, Larissa Zita Nyamba Mendome, Serge Delrot, Noël Magnin, Claudine Trossat-Magnin, Nathalie Ollat
Software Mentions: 1
Published: over 12 years ago

10.3389/fendo.2020.00269

GADD45B Transcript Is a Prognostic Marker in Papillary Thyroid Carcinoma Patients Treated With Total Thyroidectomy and Radioiodine Therapy
Cited by: 12
Author(s): Mateus Camargo Barros-Filho, Julia Bette Homem de Mello, Fábio Albuquerque Marchi, Clóvis Antônio Lopes Pinto, Igor C da Silva, Patrícia Kauanna Fonseca Damasceno, Milena Botelho Pereira Soares, Luiz Paulo Kowalski, Sílvia Regina Rogatto
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0008583

Transglutaminase 2, a Novel Regulator of Eicosanoid Production in Asthma Revealed by Genome-Wide Expression Profiling of Distinct Asthma Phenotypes
Cited by: 62
Author(s): Teal S. Hallstrand, Mark M. Wurfel, Ying Lü, Zhanglin Ni, Michael H. Gelb, William A. Altemeier, Richard P. Beyer, Moira L. Aitken, William R. Henderson
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0089406

JAK2-Centered Interactome Hotspot Identified by an Integrative Network Algorithm in Acute Stanford Type A Aortic Dissection
Cited by: 16
Author(s): Ping Sun, Duojiao Wu, Andrew E. Teschendorff, Tao Hong, Linyan Wang, Mengjia Qian, Chunsheng Wang, Xiangdong Wang
Software Mentions: 1
Published: over 12 years ago

10.3389/fendo.2019.00361

Co-expression Network Analysis Elucidated a Core Module in Association With Prognosis of Non-functioning Non-invasive Human Pituitary Adenoma
Cited by: 19
Author(s): Büşra Aydın, Kazım Yalçın Arğa
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0000781

Sterility and Gene Expression in Hybrid Males of Xenopus laevis and X. muelleri
Cited by: 58
Author(s): John H. Malone, Thomas H. Chrzanowski, Pawel Michalak
Software Mentions: 1
Published: about 19 years ago

10.1038/s41388-018-0577-5

Integrative network biology analysis identifies miR-508-3p as the determinant for the mesenchymal identity and a strong prognostic biomarker of ovarian cancer
Cited by: 36
Author(s): Linjie Zhao, Wei Wang, Lian Xu, Tao Yi, Xia Zhao, Yuquan Wei, Louis Vermeulen, Ajay Goel, Shengtao Zhou, Xin Wang
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0063283

A Cocoa Peptide Protects Caenorhabditis elegans from Oxidative Stress and β-Amyloid Peptide Toxicity
Cited by: 67
Author(s): Patricia Martorell, Esther Bataller, Silvia Llopis, Núria González, Beatriz Tarazona Álvarez, Fernando Montón, Pepa Ortiz, Daniel Ramón, Salvador Genovés
Software Mentions: 1
Published: over 13 years ago

10.3389/fgene.2021.646818

A Prognostic Signature Constructed by CTHRC1 and LRFN4 in Stomach Adenocarcinoma
Cited by: 3
Author(s): Songling Han, Wei Zhu, Weili Yang, Qijie Guan, Chao Chen, Qiang He, Zhuoheng Zhong, Runan Zhao, Hangming Xiong, Haote Han, Yaohan Li, Zijian Sun, Xiurong Hu, Jianmin Tian
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0076623

Novel CIC Point Mutations and an Exon-Spanning, Homozygous Deletion Identified in Oligodendroglial Tumors by a Comprehensive Genomic Approach Including Transcriptome Sequencing
Cited by: 16
Author(s): Sophie Eisenreich, Khalil Abou-El-Ardat, Karol Szafranski, Jaime Alberto Campos Valenzuela, Andreas Rump, Janice Nigro, Rolf Bjerkvig, Eva-Maria Gerlach, Karl Hackmann, Evelin Schröck, Dietmar Krex, Lars Kaderali, Gabriele Schackert, Matthias Platzer, Barbara Klink
Software Mentions: 1
Published: almost 13 years ago

10.3389/fgene.2021.733048

Development and Initial Characterization of Cellular Models for COG Complex-Related CDG-II Diseases
Cited by: 10
Author(s): Farhana Taher Sumya, Irina D. Pokrovskaya, Vladimir Lupashin
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.14004

Establishment and application of a novel patient-derived KIAA1549:BRAF-driven pediatric pilocytic astrocytoma model for preclinical drug testing
Cited by: 38
Author(s): Florian Selt, Juliane Hohloch, Thomas Hielscher, Felix Sahm, David Capper, Andrey Korshunov, Diren Usta, Sebastian Brabetz, Johannes Ridinger, Jonas Ecker, Ina Oehme, Jan Gronych, Viktoria Marquardt, David Pauck, Heidi Bächli, Charles D. Stiles, Andreas von Deimling, Marc Remke, Martin U. Schuhmann, Stefan M. Pfister, Tilman Brummer, David Jones, Olaf Witt, Till Milde
Software Mentions: 1
Published: almost 10 years ago

10.3389/fgene.2021.647152

Gene Expression Profiling of Tricarboxylic Acid Cycle and One Carbon Metabolism Related Genes for Prognostic Risk Signature of Colon Carcinoma
Cited by: 8
Author(s): Zheying Zhang, Hui Zhu, Qian Li, Wei Gao, Dan Zang, Wei Su, Rui Yang, Jiateng Zhong
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0134927

Genetic Ablation of CD38 Protects against Western Diet-Induced Exercise Intolerance and Metabolic Inflexibility
Cited by: 37
Author(s): Shian-Huey Chiang, W. Wallace Harrington, G.H. Luo, Naphtali Milliken, John C. Ulrich, Jing Chen, Deepak K. Rajpal, Ying Qian, Tiffany Carpenter, Rusty Murray, Robert S. Geske, Stephen A. Stimpson, Henning F. Kramer, Curt D. Haffner, J. David Becherer, Frank Preugschat, Andrew N. Billin
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0069083

Runx Transcription Factors Repress Human and Murine c-Myc Expression in a DNA-Binding and C-Terminally Dependent Manner
Cited by: 9
Author(s): Paejonette T. Jacobs, Li Cao, Jeremy B. Samon, Christyne Ayne Kane, Emmett Hedblom, Anne M. Bowcock, Janice C. Telfer
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0087038

Expression of Signaling Components in Embryonic Eyelid Epithelium
Cited by: 5
Author(s): Qingxi Meng, Jin Chang, Yinglei Chen, Jing Chen, Mario Medvedovic, Ying Xia
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0086137

Gene Expression Profiling and Secretome Analysis Differentiate Adult-Derived Human Liver Stem/Progenitor Cells and Human Hepatic Stellate Cells
Cited by: 49
Author(s): Silvia Berardis, Catherine Lombard, Jonathan Evraerts, Adil El Taghdouini, Valérie Rosseels, Pau Sancho‐Bru, Juan José Lozano, Leo A. van Grunsven, Étienne Sokal, Mustapha Najimi
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0139285

Bioinformatics Analyses of the Role of Vascular Endothelial Growth Factor in Patients with Non-Small Cell Lung Cancer
Cited by: 13
Author(s): Ying Wang, Lu Huang, Shuqiang Wu, Yongshi Jia, Yunmei Yang, Limin Luo, Aihong Bi, Min Fang
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0189780

Multigenic DNA vaccine induces protective cross-reactive T cell responses against heterologous influenza virus in nonhuman primates
Cited by: 22
Author(s): Merika Treants Koday, Jolie A. Leonard, Paul V. Munson, Adriana Forero, Michael Koday, Debra Bratt, James T. Fuller, Robert D. Murnane, Shulin Qin, Todd A. Reinhart, Karen Duus, Ilhem Messaoudi, Amy L. Hartman, Kelly Stefano-Cole, Juliet Morrison, Michael G. Katze, Deborah H. Fuller
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0225137

Investigating gene expression profiles of whole blood and peripheral blood mononuclear cells using multiple collection and processing methods
Cited by: 38
Author(s): Aarti Gautam, Duncan Donohue, Allison Hoke, Stacy Ann Miller, Seshamalini Srinivasan, Bintu Sowe, Leanne Detwiler, Jesse Lynch, Michael W. Levangie, Rasha Hammamieh, Marti Jett
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0117963

Proteomic Analysis of Mitochondrial-Associated ER Membranes (MAM) during RNA Virus Infection Reveals Dynamic Changes in Protein and Organelle Trafficking
Cited by: 86
Author(s): Stacy M. Horner, Courtney Wilkins, Samantha Badil, Jason A. Iskarpatyoti, Michael Gale
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0034969

Assessment of Chitosan-Affected Metabolic Response by Peroxisome Proliferator-Activated Receptor Bioluminescent Imaging-Guided Transcriptomic Analysis
Cited by: 13
Author(s): Chia‐Hung Kao, Chien-Yun Hsiang, Tin-Yun Ho
Software Mentions: 1
Published: over 14 years ago

10.1038/oncsis.2017.33

Cyclin-dependent kinase 7 is a therapeutic target in high-grade glioma
Cited by: 52
Author(s): Sameer A. Greenall, Yi Chieh Lim, Camilla B. Mitchell, Kathleen S. Ensbey, Brett W. Stringer, Alexander L. Wilding, Geraldine M. O’Neill, Kerrie L. McDonald, Daniel J. Gough, Bryan W. Day, Terrance G. Johns
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0013319

Age and Diet Affect Gene Expression Profiles in Canine Liver Tissue
Cited by: 17
Author(s): Dong Yong Kil, Brittany M. Vester Boler, Carolyn J. Apanavicius, Lawrence B. Schook, Kelly S. Swanson
Software Mentions: 1
Published: almost 16 years ago

10.3389/fgene.2021.703205

The Potential of Serum Exosomal hsa_circ_0028861 as the Novel Diagnostic Biomarker of HBV-Derived Hepatocellular Cancer
Cited by: 15
Author(s): Yuanxiao Wang, Lirong Pei, Zhihong Yue, Ming Jia, Hui Wang, Linlin Cao
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0015613

Bioinformatics Analysis of Macrophages Exposed to Porphyromonas gingivalis: Implications in Acute vs. Chronic Infections
Cited by: 16
Author(s): Wenhan Yu, Han Hu, Qingde Zhou, Yu Xia, Salomon Amar
Software Mentions: 1
Published: over 15 years ago

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Papers Mentioning limma 7,776