Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: limma

https://packages.ecosyste.ms/registries/bioconductor.org/packages/limma

Linear Models for Microarray Data
3 versions
Latest release: about 1 year ago
314 dependent packages
4,663,292 downloads total

Papers Mentioning limma 7,776

10.1126/sciadv.aba8196
A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells
Cited by: 8
Author(s): José Maria Moreira Dias, Zhanna Alekseenko, Ashwini Jeggari, Marcelo Boareto, Jannik Vollmer, M. N. Kozhevnikova, Hui Wang, Michael P. Matise, Andrey Alexeyenko, Dagmar Iber, Johan Ericson
Software Mentions: 2
Published: about 4 years ago
10.1038/s41597-019-0216-1
Multiomics analysis of tolerant interaction of potato with potato virus Y
Cited by: 11
Author(s): Tjaša Stare, Živa Ramšak, Maja Križnik, Kristina Gruden
Software Mentions: 2
Published: about 5 years ago
10.1038/s41597-020-0456-0
DNA methylation of chronic lymphocytic leukemia with differential response to chemotherapy
Cited by: 5
Author(s): Deyan Yordanov Yosifov, Johannes Bloehdorn, Hartmut Döhner, Peter Lichter, Stephan Stilgenbauer, Daniel Mertens
Software Mentions: 2
Published: over 4 years ago
10.1038/srep04954
Human leukocyte telomere length is associated with DNA methylation levels in multiple subtelomeric and imprinted loci
Cited by: 86
Author(s): Jessica L. Buxton, Matthew Suderman, Jane J. Pappas, Nada Borghol, Wendy L. McArdle, Alexandra I. F. Blakemore, Clyde Hertzman, Christine Power, Moshe Szyf, Marcus Pembrey
Software Mentions: 2
Published: over 10 years ago
10.1038/srep10775
Relationship between differentially expressed mRNA and mRNA-protein correlations in a xenograft model system
Cited by: 381
Author(s): Antonis Koussounadis, Simon P. Langdon, In Hwa Um, David J. Harrison, V. Anne Smith
Software Mentions: 2
Published: over 9 years ago
10.1038/srep12995
Identifying miRNA/mRNA negative regulation pairs in colorectal cancer
Cited by: 35
Author(s): Xile Zhou, Xiao Xu, Jinhai Wang, Jie Lin, Wenbin Chen
Software Mentions: 2
Published: over 9 years ago
10.1038/srep14392
Expression profile of a Caenorhabditis elegans model of adult neuronal ceroid lipofuscinosis reveals down regulation of ubiquitin E3 ligase components
Cited by: 7
Author(s): Hannah V. McCue, Xi Chen, Jeff W. Barclay, Alan Morgan, Robert D. Burgoyne
Software Mentions: 2
Published: about 9 years ago
10.1038/srep16882
Mycobacterial infection induces a specific human innate immune response
Cited by: 53
Author(s): John Blischak, Ludovic Tailleux, Amy Mitrano, Luis B. Barreiro, Yoav Gilad
Software Mentions: 2
Published: about 9 years ago
10.1038/srep20318
Human oral isolate Lactobacillus fermentum AGR1487 induces a pro-inflammatory response in germ-free rat colons
Cited by: 15
Author(s): Rachel C. Anderson, Dulantha Ulluwishewa, Wayne Young, Leigh Ryan, Gemma Henderson, Marjolein Meijerink, Eva Maier, Jerry M. Wells, Nicole C. Roy
Software Mentions: 2
Published: almost 9 years ago
10.1038/srep20127
Hepatic circadian clock oscillators and nuclear receptors integrate microbiome-derived signals
Cited by: 87
Author(s): Alexandra Montagner, Agata Korecka, Arnaud Polizzi, Yannick Lippi, Yuna Blum, Cécile Canlet, Marie Tremblay-Franco, Amandine Gautier‐Stein, Rémy Burcelin, Yi-Chun Yen, H. Shawn Je, Maha Al-Asmakh, Gilles Mithieux, Velmurugesan Arulampalam, Sandrine Lagarrigue, Hervé Guillou, Sven Pettersson, Walter Wahli
Software Mentions: 2
Published: almost 9 years ago
10.1038/s41598-020-69978-w
Immune outcomes of Zika virus infection in nonhuman primates
Cited by: 5
Author(s): Blake Schouest, Marissa Fahlberg, Elizabeth A. Scheef, Matthew J. Ward, Kyra Headrick, Dawn Szeltner, Robert V Blair, Margaret H. Gilbert, Lara A. Doyle-Meyers, Victoria W. Danner, Myrna C. Bonaldo, Dawn M. Wesson, Antonito T. Panganiban, Nicholas J. Maness
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-69695-4
Identification of differentially expressed genes profiles in a combined mouse model of Parkinsonism and colitis
Cited by: 7
Author(s): Ana-Luisa Gil-Martínez, Lorena Cuenca‐Bermejo, Ana González-Cuello, Consuelo Sánchez-Rodrigo, Antonio Parrado, Sheela Vyas, Emiliano Fernández-Villalba, María Teófila Vicente Herrero
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-70541-w
Changes in the plasma microvesicle proteome during the ovarian hyperstimulation phase of assisted reproductive technology
Cited by: 1
Author(s): Nina Olausson, Fariborz Mobarrez, Roman A. Zubarev, Alexey Chernobrovkin, Dorothea Rutishauser, Katarina Bremme, Eli Westerlund, Outi Hovatta, Håkan Wallén, Peter Henriksson
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-70244-2
Obesity and ethnicity alter gene expression in skin
Cited by: 5
Author(s): Joseph R. Walker, Sandra Garcet, José O. Alemán, Christopher E. Mason, David Danko, Simone Zuffa, Jonathan R. Swann, James G. Krueger, Jan L. Breslow, Peter R. Holt
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-71328-9
Genome characteristics of Kordia antarctica IMCC3317T and comparative genome analysis of the genus Kordia
Cited by: 7
Author(s): Yeonjung Lim, Ilnam Kang, Jang-Cheon Cho
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-71997-6
Identification of miRNA signatures for kidney renal clear cell carcinoma using the tensor-decomposition method
Cited by: 13
Author(s): Ka-Lok Ng, Y-h. Taguchi
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-72399-4
Translation elongation factor 2 depletion by siRNA in mouse liver leads to mTOR-independent translational upregulation of ribosomal protein genes
Cited by: 10
Author(s): Maxim V. Gerashchenko, Mikhail V. Nesterchuk, Elena M. Smekalova, João A. Paulo, Piotr S. Kowalski, Kseniya A. Akulich, Roman L. Bogorad, Sergey E. Dmitriev, Steven P. Gygi, Timofei S. Zatsepin, Daniel G. Anderson, Vadim N. Gladyshev, Victor Koteliansky
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-72172-7
Hepatic lipocalin 2 promotes liver fibrosis and portal hypertension
Cited by: 25
Author(s): Jiegen Chen, Josepmaria Argemí, Gemma Òdena, Mingjiang Xu, Yan Cai, Veronica Massey, Austin Parrish, Rajanikanth Vadigepalli, José Altamirano, Joaquín Cabezas, Pere Ginès, Juan Caballería, Natasha T. Snider, Pau Sancho‐Bru, Shizuo Akira, Ivan Rusyn, Bin Gao, R. Bataller
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-72068-6
Heterogeneous ozone effects on the DNA methylome of bronchial cells observed in a crossover study
Cited by: 11
Author(s): Marie‐Abèle Bind, Donald B. Rubin, Andrés Cárdenas, Radhika Dhingra, Cavin Ward‐Caviness, Liu Z, Jaime E. Mirowsky, Joel Schwartz, David Díaz-Sánchez, Robert B. Devlin
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-72864-0
Transcriptional characterization of conjunctival melanoma identifies the cellular tumor microenvironment and prognostic gene signatures
Cited by: 21
Author(s): Julian Wolf, Claudia Auw-Haedrich, Anja Schlecht, Stefaniya Boneva, Hans Mittelviefhaus, Thabo Lapp, Hansjürgen Agostini, Thomas Reinhard, Günther Schlunck, Clemens Lange
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-74276-6
Pan-cancer driver copy number alterations identified by joint expression/CNA data analysis
Cited by: 6
Author(s): Gaojianyong Wang, Dimitris Anastassiou
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-74973-2
Gene expression profile of CD14+ blood monocytes following lifestyle-induced weight loss in individuals with metabolic syndrome
Cited by: 3
Author(s): Ronald Biemann, Kirsten Roomp, Nosheen Fatima, Shruthi Krishnan, Zhen Li, K. Shahzad, Katrin Borucki, Claus Luley, Jochen G. Schneider, Berend Isermann
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-76879-5
The effect of Rbfox2 modulation on retinal transcriptome and visual function
Cited by: 6
Author(s): Lin Gu, Riki Kawaguchi, Joseph Caprioli, Natik Piri
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-77601-1
Loss of FOXF1 expression promotes human lung-resident mesenchymal stromal cell migration via ATX/LPA/LPA1 signaling axis
Cited by: 10
Author(s): Pengxiu Cao, Neff Walker, Russell R. Braeuer, Serina Mazzoni-Putman, Yoshiro Aoki, Keizo Misumi, David Wheeler, Ragini Vittal, Vibha N. Lama
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-78866-2
Rho-GTPase pathways may differentiate treatment response to TNF-alpha and IL-17A inhibitors in psoriatic arthritis
Cited by: 4
Author(s): Sara Rahmati, Darren D. O’Rielly, Quan Li, D. Codner, A. Dohey, Kari Jenkins, Igor Jurišica, Dafna D. Gladman, Vinod Chandran, Proton Rahman
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-79165-6
Lipid metabolism in Calanus finmarchicus is sensitive to variations in predation risk and food availability
Cited by: 0
Author(s): Elise Skottene, Ann M. Tarrant, Dag Altin, Rolf Erik Olsen, Marvin Choquet, Kristina Øie Kvile
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-80509-5
Nuclear IL-33 restrains the early conversion of fibroblasts to an extracellular matrix-secreting phenotype
Cited by: 16
Author(s): Francesca Gatti, Sobuj Mia, Clara Hammarström, Nadine Frerker, Bjarte Fosby, Junbai Wang, Wojciech Pietka, Olav Sundnes, Johanna Hol, Monika Kasprzycka, Guttorm Haraldsen
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-79356-1
Late p65 nuclear translocation in glioblastoma cells indicates non-canonical TLR4 signaling and activation of DNA repair genes
Cited by: 6
Author(s): Isabele Fattori Moretti, Antônio M. Lerário, Marina Trombetta-Lima, Paula R. Sola, Roseli da Silva Soares, Sueli Mieko Oba-Shinjo, Suely Kazue Nagahashi Marie
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-77636-4
Investigation of MicroRNA and transcription factor mediated regulatory network for silicosis using systems biology approach
Cited by: 9
Author(s): Jyoti Kant Choudhari, Mukesh Verma, Jyotsna Choubey, Biju Prava Sahariah
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-80941-7
Multi-omic analysis unveils biological pathways in peripheral immune system associated to minimal hepatic encephalopathy appearance in cirrhotic patients
Cited by: 8
Author(s): Teresa Rubio, Vicente Felipo, Sonia Tarazona, Roberta Pastorelli, Desamparados Escudero‐García, Joan Tosca, Amparo Urios, Ana Conesa, Carmina Montoliú
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-79769-y
Integrative multiomics analysis of Premolis semirufa caterpillar venom in the search for molecules leading to a joint disease
Cited by: 2
Author(s): Giselle Pidde, Milton Yutaka Nishiyama, Úrsula Castro de Oliveira, Isadora Maria Villas-Boas, Adriana F. Paes‐Leme, Inácio L.M. Junqueira-de-Azevedo, Rafael Marques-Porto, Carla Cristina Squaiella-Baptistão, Denise V. Tambourgi
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-81794-4
Valproic acid influences the expression of genes implicated with hyperglycaemia-induced complement and coagulation pathways
Cited by: 17
Author(s): Marina Barreto Felisbino, Mark Ziemann, Ishant Khurana, Jun Okabe, Keith Al-Hasani, Scott Maxwell, K N Harikrishnan, C. Oliveira, Maria Luiza S. Mello, Assam El‐Osta
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-82802-3
Transgenic inhibition of interleukin-6 trans-signaling does not prevent skeletal pathologies in mucolipidosis type II mice
Cited by: 1
Author(s): Lena Marie Westermann, Anke Baranowsky, Giorgia Di Lorenzo, Tatyana Danyukova, Jamie Soul, Jean-Marc Schwartz, Gretl Hendrickx, Michael Amling, Stefan Rose‐John, Christoph Garbers, Thorsten Schinke, Sandra Pohl
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-82252-x
Inhibition of androgen/AR signaling inhibits diethylnitrosamine (DEN) induced tumour initiation and remodels liver immune cell networks
Cited by: 8
Author(s): Timothy H. Helms, Riley Mullins, Jennifer M. Thomas‐Ahner, Samuel K. Kulp, Moray J. Campbell, Fabienne Lucas, Nathan W. Schmidt, D. Lemoine, Surafel Getaneh, Zhiliang Xie, Mitch A. Phelps, Steven K. Clinton, Christopher C. Coss
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-83345-3
Altered non-coding RNA expression profile in F1 progeny 1 year after parental irradiation is linked to adverse effects in zebrafish
Cited by: 4
Author(s): Leonardo Martín, Jorke H. Kamstra, Selma Hurem, Leif C. Lindeman, Dag Anders Brede, Håvard Aanes, Igor Babiak, Amílcar Arenal, Deborah Oughton, Brit Salbu, Jan Ludvig Lyche, Peter Alestrøm
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-80662-x
Identification of LINC00665-miR-let-7b-CCNA2 competing endogenous RNA network associated with prognosis of lung adenocarcinoma
Cited by: 12
Author(s): Yu‐Sheng Huang, Zhong Li, Kechao Nie, Lijuan Li, Shaohua Song, Fengbin Liu, Peiwu Li, Deliang Cao, Yufeng Liu
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-83366-y
Elevation in viral entry genes and innate immunity compromise underlying increased infectivity and severity of COVID-19 in cancer patients
Cited by: 4
Author(s): Jennifer Kwan, Liang Lin, Rachel Bell, Jeffrey P. Bruce, Christopher T. Richardson, Trevor J. Pugh, Fei‐Fei Liu
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-83668-1
Novel gene signatures for stage classification of the squamous cell carcinoma of the lung
Cited by: 3
Author(s): Ángel Juárez-Flores, Gabriel S. Zamudio, Marco V. José
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-84350-2
Epithelial to mesenchymal transition and microRNA expression are associated with spindle and apocrine cell morphology in triple-negative breast cancer
Cited by: 13
Author(s): Markéta Kolečková, Jiří Ehrmann, Jan Bouchal, Mária Janíková, Aneta Brisudova, Josef Srovnal, Kateřina Štaffová, Marek Svoboda, Ondřej Slabý, Lenka Radová, Katherine Vomáčková, Bohuslav Melichar, L Veverková, Zdeněk Kolář
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-84824-3
DBnorm as an R package for the comparison and selection of appropriate statistical methods for batch effect correction in metabolomic studies
Cited by: 9
Author(s): Nasim Bararpour, Federica Gilardi, Cristian Carmeli, Jonathan Sidibé, Julijana Ivanišević, Tiziana Caputo, Marc Augsburger, Silke Grabherr, Béatrice Desvergne, Nicolas Guex, Murielle Bochud, Aurélien Thomas
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-86284-1
Ibuprofen alters epoxide hydrolase activity and epoxy-oxylipin metabolites associated with different metabolic pathways in murine livers
Cited by: 4
Author(s): Shuchita Tiwari, Jun Yang, Christophe Morisseau, Blythe Durbin‐Johnson, Bruce D. Hammock, Aldrin V. Gomes
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-86671-8
Toward the discovery of biological functions associated with the mechanosensor Mtl1p of Saccharomyces cerevisiae via integrative multi-OMICs analysis
Cited by: 3
Author(s): Nelson Martinez‐Matias, Nataliya Chorna, Sahily González-Crespo, Lilliam Villanueva, Ingrid M. Montes-Rodríguez, Loyda M. Melendez-Aponte, Abiel Roche-Lima, Kelvin Carrasquillo-Carrión, Ednalise Santiago‐Cartagena, Brian C. Rymond, Mohan Babu, Igor Štagljar, José R. Rodríguez‐Medina
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-86879-8
Transcriptomic signals in blood prior to lung cancer focusing on time to diagnosis and metastasis
Cited by: 4
Author(s): Therese Haugdahl Nøst, Matthew T. G. Holden, Tom Dønnem, Hege Bøvelstad, Charlotta Rylander, Eiliv Lund, Torkjel M. Sandanger
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-89037-2
Expression of VEGFA-mRNA in classical and MSX2-mRNA in non-classical monocytes in patients with spondyloarthritis is associated with peripheral arthritis
Cited by: 0
Author(s): Małgorzata Stec, Michał Seweryn, Mariusz Korkosz, Zofia Guła, Rafał Szatanek, Kazimierz Węglarczyk, Magdalena Rutkowska-Zapała, Marzena Lenart, Marcin Czepiel, Jarosław Czyż, Jarosław Baran, Anna Gruca, Kamila Wojnar-Lasoń, Paweł Wołkow, Maciej Siedlar
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-89084-9
Dynamic miRNA changes during the process of epileptogenesis in an infantile and adult-onset model
Cited by: 11
Author(s): Petra Bencúrová, Jiří Baloun, Jakub Hynšt, Jan Oppelt, Hana Kubová, Šárka Pospı́šilová, Milan Brázdil
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-89224-1
African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors associated with immunologic functions and environmental exposures
Cited by: 12
Author(s): Urminder Singh, Kyle M. Hernandez, Bruce J. Aronow, Eve Syrkin Wurtele
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-89802-3
Hippocampal CA3 transcriptional modules associated with granule cell alterations and cognitive impairment in refractory mesial temporal lobe epilepsy patients
Cited by: 6
Author(s): Sílvia Yumi Bando, Fernanda Bernardi Bertonha, Luciana Ramalho Pimentel‐Silva, João Gabriel Mansano de Oliveira, Marco Antonio Duarte Carneiro, Mariana Hiromi Manoel Oku, Hung-Tzu Wen, Luiz Henrique Martins Castro, Carlos Alberto Moreira‐Filho
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-90212-8
Health monitoring in birds using bio-loggers and whole blood transcriptomics
Cited by: 9
Author(s): Elinor Jax, Inge Müller, Stefan T. Börno, Hanna Borlinghaus, Gustaw Eriksson, Evi Fricke, Bernd Timmermann, Helene Pendl, Wolfgang Fiedler, Karsten Klein, Falk Schreiber, Martin Wikelski, Katharine E. Magor, Robert H. S. Kraus
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-90126-5
A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma
Cited by: 14
Author(s): Zhi‐Xiang Yu, Haiyan He, Yanan Chen, Qiuhe Ji, Min Sun
Software Mentions: 2
Published: over 3 years ago
10.7554/eLife.20542
Auxin production in the endosperm drives seed coat development in Arabidopsis
Cited by: 144
Author(s): Duarte D. Figueiredo, Rita A Batista, Pawel Roszak, Lars Hennig, Claudia Köhler
Software Mentions: 2
Published: about 8 years ago
10.7554/eLife.20725
Dual leucine zipper kinase-dependent PERK activation contributes to neuronal degeneration following insult
Cited by: 49
Author(s): Martin Larhammar, Sarah Huntwork‐Rodriguez, Zhiyu Jiang, Hilda Solanoy, Arundhati Sengupta Ghosh, Bei Wang, Joshua S. Kaminker, Kevin Huang, Jeffrey Eastham-Anderson, Michael Siu, Zora Modrušan, Madeline M. Farley, Marc Tessier‐Lavigne, Joseph W. Lewcock, Trent A. Watkins
Software Mentions: 2
Published: over 7 years ago
10.7554/eLife.01460
miR-146a promotes the initiation and progression of melanoma by activating Notch signaling
Cited by: 99
Author(s): Matteo Forloni, Shaillay Kumar Dogra, Yujuan Dong, Darryl Conte, Jianhong Ou, Lihua Julie Zhu, April Deng, Meera Mahalingam, Michael R. Green, Narendra Wajapeyee
Software Mentions: 2
Published: almost 11 years ago
10.7554/eLife.39982
The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response
Cited by: 76
Author(s): Sydney Lavoie, Kara L. Conway, Kara G. Lassen, Humberto Jijon, Pei Hui, Eunyoung Chun, Monia Michaud, Jessica Lang, Carey Ann Gallini Comeau, Jonathan M. Dreyfuss, Jonathan N. Glickman, Hera Vlamakis, Ashwin N. Ananthakrishnan, Aleksandar D. Kostic, Wendy S. Garrett, Ramnik J. Xavier
Software Mentions: 2
Published: almost 6 years ago
10.7554/eLife.66608
KSR1- and ERK-dependent translational regulation of the epithelial-to-mesenchymal transition
Cited by: 10
Author(s): C. Mallikarjuna Rao, Danielle E. Frodyma, Siddesh Southekal, Robert A. Svoboda, Adrian R. Black, Chittibabu Guda, Tomohiro Mizutani, Hans Clevers, Keith R. Johnson, Kurt W. Fisher, Robert E. Lewis
Software Mentions: 2
Published: over 3 years ago
10.7554/eLife.27406
Histone H3G34R mutation causes replication stress, homologous recombination defects and genomic instability in S. pombe
Cited by: 33
Author(s): Rajesh K Yadav, Carolyn Jablonowski, Alfonso G. Fernandez, Brandon R Lowe, Ryan A. Henry, David Finkelstein, Kevin J Barnum, Alison L. Pidoux, Yin-Ming Kuo, Jie Huang, Matthew J. O’Connell, Andrew J. Andrews, Arzu Onar‐Thomas, Robin C. Allshire, Janet F. Partridge
Software Mentions: 2
Published: over 7 years ago
10.7554/eLife.18648
Maintenance of age in human neurons generated by microRNA-based neuronal conversion of fibroblasts
Cited by: 139
Author(s): Christine J. Huh, Bo Zhang, Matheus B. Victor, Sonika Dahiya, Luis Francisco Zirnberger Batista, Steve Horvath, Andrew S. Yoo
Software Mentions: 2
Published: about 8 years ago
10.7554/eLife.63326
The mTORC1-mediated activation of ATF4 promotes protein and glutathione synthesis downstream of growth signals
Cited by: 80
Author(s): Margaret E. Torrence, Michael R. MacArthur, Aaron M. Hosios, Alexander J. Valvezan, John M. Asara, James R. Mitchell, Brendan D. Manning
Software Mentions: 2
Published: almost 4 years ago
10.7554/eLife.01098
Growth hormone-releasing hormone disruption extends lifespan and regulates response to caloric restriction in mice
Cited by: 110
Author(s): Liou Y. Sun, Adam Spong, William R. Swindell, Yimin Fang, Cristal M. Hill, J Huber, Jacob D Boehm, Reyhan Westbrook, Roberto Salvatori, Andrzej Bartke
Software Mentions: 2
Published: about 11 years ago
10.7554/eLife.57761
Genome-wide CRISPR screens of oral squamous cell carcinoma reveal fitness genes in the Hippo pathway
Cited by: 27
Author(s): Annie Wai Yeeng Chai, Pei San Yee, Stacey Price, Shi Mun Yee, Hui Mei Lee, Vivian Kh Tiong, Emanuel Gonçalvès, Fiona M. Behan, Jess Bateson, James Gilbert, Aik Choon Tan, Ultan McDermott, Mathew J. Garnett, Sok Ching Cheong
Software Mentions: 2
Published: about 4 years ago
10.7554/eLife.39823
A virus-packageable CRISPR screen identifies host factors mediating interferon inhibition of HIV
Cited by: 94
Author(s): Molly OhAinle, Louisa Helms, Jolien Vermeíre, Ferdinand Roesch, Daryl Humes, Ryan Basom, Jeffrey J. Delrow, Julie Overbaugh, Michael Emerman
Software Mentions: 2
Published: almost 6 years ago
10.7554/eLife.23244
Prosurvival long noncoding RNA PINCR regulates a subset of p53 targets in human colorectal cancer cells by binding to Matrin 3
Cited by: 67
Author(s): Ritu Chaudhary, Berkley E. Gryder, Wendy S. Woods, Subramanian Mahadevan, Michael R. Jones, Xiao Ling Li, Lisa M. Miller Jenkins, Svetlana A. Shabalina, Min Mo, Mary Dasso, Yuan Yang, Lalage M. Wakefield, Yuelin J. Zhu, Susan M Frier, Branden S. Moriarity, Kannanganattu V. Prasanth, Pablo Pérez-Piñera, Ashish Lal
Software Mentions: 2
Published: over 7 years ago
10.7554/eLife.59686
Dichotomous role of the human mitochondrial Na+/Ca2+/Li+ exchanger NCLX in colorectal cancer growth and metastasis
Cited by: 35
Author(s): Trayambak Pathak, Maxime Guéguinou, Vonn Walter, Céline Delierneux, Martin Johnson, Xuexin Zhang, Ping Xin, Ryan E. Yoast, Scott M. Emrich, Gregory S. Yochum, Israel Sekler, Walter A. Koltun, Donald L. Gill, Nadine Hempel
Software Mentions: 2
Published: about 4 years ago
10.7554/eLife.04506
Heterochromatin assembly and transcriptome repression by Set1 in coordination with a class II histone deacetylase
Cited by: 25
Author(s): David R. Lorenz, Lauren F Meyer, Patrick J. R. Grady, Michelle M. Meyer, Hugh P. Cam
Software Mentions: 2
Published: almost 10 years ago
10.7554/eLife.04525
Mucosal effects of tenofovir 1% gel
Cited by: 40
Author(s): Florian Hladik, Adam Burgener, Lamar Ballweber, Raphaël Gottardo, Lucia Vojtech, Slim Fourati, Jiyan Dai, Mark J. Cameron, Johanna Strobl, Sean M. Hughes, Craig Hoesley, P. Andrew, Sherri Johnson, Jeanna Piper, David R. Friend, T. Blake Ball, Ross D. Cranston, Kenneth H. Mayer, M. Juliana McElrath, Ian McGowan
Software Mentions: 2
Published: almost 10 years ago
10.7554/eLife.50670
GLI transcriptional repression regulates tissue-specific enhancer activity in response to Hedgehog signaling
Cited by: 29
Author(s): Rachel K. Lex, Zhicheng Ji, Kristin N. Falkenstein, Weiqiang Zhou, Joanna L Henry, Hongkai Ji, Steven A. Vokes
Software Mentions: 2
Published: almost 5 years ago
10.7554/eLife.30325
Injury-induced perivascular niche supports alternative differentiation of adult rodent CNS progenitor cells
Cited by: 24
Author(s): Justyna Ulanska-Poutanen, Jakub Mieczkowski, Chao Zhao, Katarzyna Konarzewska, Beata Kaza, Hartmut B.F. Pohl, Łukasz Bugajski, Bożena Kamińska, Robin J.M. Franklin, Małgorzata Zawadzka
Software Mentions: 2
Published: about 6 years ago
10.3390/ijms140611190
Angiotensin II Regulates microRNA-132/-212 in Hypertensive Rats and Humans
Cited by: 107
Author(s): Tilde V Eskildsen, Pia Jeppesen, Mikael Schneider, A. Yaël Nossent, Maria Boysen Sandberg, Pernille Hansen, Charlotte Harken Jensen, Morten Hartvig Hansen, Niels Marcussen, Lars Melholt Rasmussen, Peter Bie, Ditte Caroline Andersen, Søren Paludan Sheikh
Software Mentions: 2
Published: over 11 years ago
10.3390/ijms17040584
In Vitro Model for Hepatotoxicity Studies Based on Primary Human Hepatocyte Cultivation in a Perfused 3D Bioreactor System
Cited by: 18
Author(s): Fanny Knöspel, Frank Jacobs, Nora Freyer, Georg Damm, An De Bondt, Ilse Van den Wyngaert, Jan Snoeys, Mario Monshouwer, Marco Richter, Nadja Strahl, Daniel Seehofer, Katrin Zeilinger
Software Mentions: 2
Published: over 8 years ago
10.3390/ijms17050776
Integrated Analysis of Expression Profile Based on Differentially Expressed Genes in Middle Cerebral Artery Occlusion Animal Models
Cited by: 9
Author(s): Huaqiang Zhou, Zeting Qiu, Gao S, Qinchang Chen, Si Li, Wulin Tan, Xiaochen Liu, Zhongxing Wang
Software Mentions: 2
Published: over 8 years ago
10.3390/ijms18081674
Strategies towards Improved Feed Efficiency in Pigs Comprise Molecular Shifts in Hepatic Lipid and Carbohydrate Metabolism
Cited by: 20
Author(s): Henry Reyer, Michael Oster, Elizabeth Magowan, Dirk Dannenberger, Siriluck Ponsuksili, Klaus Wimmers
Software Mentions: 2
Published: over 7 years ago
10.3390/ijms18112295
Inter-Species Host Gene Expression Differences in Response to Human and Avian Influenza A Virus Strains
Cited by: 9
Author(s): Biruhalem Taye, David Yeo, Raphael Tze Chuen Lee, Boon Huan Tan, Richard J. Sugrue, Sebastian Maurer‐Stroh
Software Mentions: 2
Published: about 7 years ago
10.3390/ijms19010234
Transcriptomics Evidence for Common Pathways in Human Major Depressive Disorder and Glioblastoma
Cited by: 13
Author(s): Yongfang Xie, Ling Wang, Zengyan Xie, Chuisheng Zeng, Kunxian Shu
Software Mentions: 2
Published: almost 7 years ago
10.3390/ijms19030851
A Comprehensive Analysis of Argonaute-CLIP Data Identifies Novel, Conserved and Species-Specific Targets of miR-21 in Human Liver and Hepatocellular Carcinoma
Cited by: 21
Author(s): Aaron B. Koenig, Juan M. Barajas, María Jose Guerrero, Kalpana Ghoshal
Software Mentions: 2
Published: over 6 years ago
10.3390/ijms19124008
Oviposition by Spodoptera exigua on Solanum dulcamara Alters the Plant’s Response to Herbivory and Impairs Larval Performance
Cited by: 8
Author(s): Daniel Geuß, Tobias Lortzing, Jens Schwachtje, Joachim Kopka, Anke Steppuhn
Software Mentions: 2
Published: almost 6 years ago
10.3390/ijms19124106
Effects of Space Flight on Mouse Liver versus Kidney: Gene Pathway Analyses
Cited by: 17
Author(s): Timothy G. Hammond, Patricia Allen, Holly H. Birdsall
Software Mentions: 2
Published: almost 6 years ago
10.3390/ijms20051118
Growth Factor Screening in Dystrophic Muscles Reveals PDGFB/PDGFRB-Mediated Migration of Interstitial Stem Cells
Cited by: 8
Author(s): J. Camps, Hanne Grosemans, Rik Gijsbers, Christa Maes, Maurilio Sampaolesi
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms20143444
Long Non-coding RNAs as Important Biomarkers in Laryngeal Cancer and Other Head and Neck Tumours
Cited by: 61
Author(s): Alessia Maria Cossu, Laura Mosca, Silvia Zappavigna, Gabriella Misso, Marco Bocchetti, Federica De Micco, Lucio Quagliuolo, Marina Porcelli, Michele Caraglia, Mariarosaria Boccellino
Software Mentions: 2
Published: over 5 years ago
10.3389/fpls.2019.01443
Metabolic Dynamics of Developing Rice Seeds Under High Night-Time Temperature Stress
Cited by: 49
Author(s): Balpreet K. Dhatt, Nathan Abshire, Puneet Paul, Kalani Hasanthika, Jaspreet Sandhu, Qi Zhang, Toshihiro Obata, Harkamal Walia
Software Mentions: 1
Published: about 5 years ago
10.1007/s00335-018-9750-y
Of mice and men: the host response to influenza virus infection
Cited by: 16
Author(s): Heike Kollmus, Carolin Pilzner, Sarah R. Leist, Mark T. Heise, Robert Geffers, Klaus Schughart
Software Mentions: 1
Published: over 6 years ago
10.3389/fpls.2019.01131
Transcriptome Profiles of Strawberry (Fragaria vesca) Fruit Interacting With Botrytis cinerea at Different Ripening Stages
Cited by: 45
Author(s): Zeraye Mehari Haile, Ellaine Grace Nagpala-De Guzman, Marco Moretto, Paolo Sonego, Kristof Engelen, Lisa Zoli, C. Moser, Elena Baraldi
Software Mentions: 1
Published: about 5 years ago
10.1186/s12936-017-2099-y
Malaria vectors in the Democratic Republic of the Congo: the mechanisms that confer insecticide resistance in Anopheles gambiae and Anopheles funestus
Cited by: 36
Author(s): Luisa Nardini, Richard H. Hunt, Yael Dahan-Moss, Nanette Christie, Riann Christian, Maureen Coetzee, Lizette L. Koekemoer
Software Mentions: 1
Published: about 7 years ago
10.1002/cbic.201600396
Discovery of Unusual Biaryl Polyketides by Activation of a Silent<i>Streptomyces venezuelae</i>Biosynthetic Gene Cluster
Cited by: 47
Author(s): Anyarat Thanapipatsiri, Juan Pablo Gomez-Escribano, Lijiang Song, Maureen J. Bibb, Mahmoud M. Al‐Bassam, Govind Chandra, Arinthip Thamchaipenet, Gregory L. Challis, Mervyn J. Bibb
Software Mentions: 1
Published: about 8 years ago
10.3390/cells10081917
Familiarity Breeds Strategy: In Silico Untangling of the Molecular Complexity on Course of Autoimmune Liver Disease-to-Hepatocellular Carcinoma Transition Predicts Novel Transcriptional Signatures
Cited by: 2
Author(s): Soumyadeep Mukherjee, Arpita Kar, Najma Khatun, Puja Datta, Avik Biswas, Subhasis Barik
Software Mentions: 1
Published: over 3 years ago
10.3389/fpsyt.2013.00066
Therapeutic Action of Fluoxetine is Associated with a Reduction in Prefrontal Cortical miR-1971 Expression Levels in a Mouse Model of Posttraumatic Stress Disorder
Cited by: 47
Author(s): Ulrike Schmidt, Leonie Herrmann, Kathrin Hagl, Božidar Novak, Christian G. Huber, Florian Holsboer, Carsten T. Wotjak, Dominik R. Buell
Software Mentions: 1
Published: almost 12 years ago
10.3389/fpsyt.2018.00636
A Subset of Patients With Autism Spectrum Disorders Show a Distinctive Metabolic Profile by Dried Blood Spot Analyses
Cited by: 35
Author(s): Rita Barone, Salvatore Alaimo, Marianna Messina, Alfredo Pulvirenti, Jean Bastin, Alfredo Ferro, Richard E. Frye, Renata Rizzo
Software Mentions: 1
Published: almost 6 years ago
10.3390/cells9020435
miR-1272 Exerts Tumor-Suppressive Functions in Prostate Cancer via HIP1 Suppression
Cited by: 11
Author(s): Federica Rotundo, Denis Cominetti, Rihan El Bezawy, Stefano Percio, Valentina Doldi, Monica Tortoreto, Valentina Zuco, Riccardo Valdagni, Nadia Zaffaroni, Paolo Gandellini
Software Mentions: 1
Published: almost 5 years ago
10.7554/eLife.03115
A receptor-like kinase mutant with absent endodermal diffusion barrier displays selective nutrient homeostasis defects
Cited by: 180
Author(s): Alexandre Pfister, Marie Barberon, Julien Alassimone, Lothar Kalmbach, Yuree Lee, Joop E. M. Vermeer, Misako Yamazaki, Guowei Li, Christophe Maurel, Junpei Takano, Takehiro Kamiya, David E. Salt, Daniele Roppolo, Niko Geldner
Software Mentions: 1
Published: about 10 years ago
10.1007/s10142-018-0641-9
Comprehensive analysis of microarray expression profiles of circRNAs and lncRNAs with associated co-expression networks in human colorectal cancer
Cited by: 23
Author(s): Yuan Tian, Yu Xu, Huawei Wang, Ruo Shu, Liang Sun, Yujian Zeng, Fangyou Gong, Yi Lei, Kunhua Wang, Huayou Luo
Software Mentions: 1
Published: about 6 years ago
10.3390/cells8101220
Comprehensive Multi-Omics Analysis Reveals Aberrant Metabolism of Epstein–Barr-Virus-Associated Gastric Carcinoma
Cited by: 20
Author(s): Sang Jun Yoon, Jun Yeob Kim, Nguyen Phuoc Long, Jung Eun Min, Hyung Min Kim, Jae Hee Yoon, Nguyễn Hoàng Anh, Myung Chan Park, Sung Won Kwon, Suk Kyeong Lee
Software Mentions: 1
Published: about 5 years ago
10.1534/g3.111.001644
Many<i>Saccharomyces cerevisiae</i>Cell Wall Protein Encoding Genes Are Coregulated by Mss11, but Cellular Adhesion Phenotypes Appear Only Flo Protein Dependent
Cited by: 23
Author(s): Michael C. Bester, Dan Jacobson, Florian F. Bauer
Software Mentions: 1
Published: almost 13 years ago
10.1534/g3.111.000422
Deciphering the Molecular Basis of Wine Yeast Fermentation Traits Using a Combined Genetic and Genomic Approach
Cited by: 76
Author(s): Chloé Ambroset, Maud Petit, Christian Brion, Isabelle Sanchez, Pierre Delobel, Cyprien Guérin, Hélène Chiapello, Pierre Nicolas, Frédéric Bigey, Sylvie Dequin, Bruno Blondin
Software Mentions: 1
Published: over 13 years ago
10.1186/s13293-018-0213-7
Sex-related DNA methylation differences in B cell chronic lymphocytic leukemia
Cited by: 23
Author(s): Shuchun Lin, Yun Liu, Lynn R. Goldin, Chao Lyu, Xiangyin Kong, Yan Zhang, Neil E. Caporaso, Song Xiang, Ying Gao
Software Mentions: 1
Published: almost 6 years ago
10.1534/g3.112.002279
Convergent Evolution of Calcineurin Pathway Roles in Thermotolerance and Virulence in<i>Candida glabrata</i>
Cited by: 82
Author(s): Ying-Lien Chen, Jay H. Konieczka, Deborah J. Springer, Samantha Bowen, Jing Zhang, Fitz Gerald S. Silao, Alice Alma C. Bungay, Ursela G. Bigol, Marilou G. Nicolas, Soman N. Abraham, Dawn Thompson, Aviv Regev, Joseph Heitman
Software Mentions: 1
Published: over 12 years ago
10.3390/cells9040955
The Catalytic-Dependent and -Independent Roles of Lsd1 and Lsd2 Lysine Demethylases in Heterochromatin Formation in Schizosaccharomyces pombe
Cited by: 6
Author(s): Bahjat Fadi Marayati, James F. Tucker, David A. de la Cerda, Tien-Chi Hou, Rong Chen, Tomoyasu Sugiyama, James B. Pease, Ke Zhang
Software Mentions: 1
Published: over 4 years ago
10.1534/g3.112.005306
Reproductive Status Alters Transcriptomic Response to Infection in Female<i>Drosophila melanogaster</i>
Cited by: 55
Author(s): Sarah M. Short, Brian P. Lazzaro
Software Mentions: 1
Published: over 11 years ago
10.1534/g3.113.006809
Cell-Type–Specific Transcriptional Profiles of the Dimorphic Pathogen <i>Penicillium marneffei</i> Reflect Distinct Reproductive, Morphological, and Environmental Demands
Cited by: 25
Author(s): Shivani Pasricha, Michael Payne, David Cánovas, Luke Pase, Nathamon Ngaosuwankul, Sally Beard, Alicia Oshlack, Gordon K. Smyth, Sansanee C. Chaiyaroj, Kylie J. Boyce, Alex Andrianopoulos
Software Mentions: 1
Published: about 11 years ago
10.7554/eLife.12116
Hepatocyte Growth Factor-mediated satellite cells niche perturbation promotes development of distinct sarcoma subtypes
Cited by: 5
Author(s): Deborah Morena, Nicola Maestro, Francesca Bersani, Paolo E. Forni, Marcello Francesco Lingua, Valentina Foglizzo, Petar Šćepanović, Silvia Miretti, Alessandro Morotti, Jack F. Shern, Javed Khan, Ugo Ala, Paolo Provero, Valentina Sala, Tiziana Crepaldi, Patrizia Gasparini, Michela Casanova, Andrea Ferrari, Gabriella Sozzi, Roberto Chiarle, Carola Ponzetto, Riccardo Taulli
Software Mentions: 1
Published: over 8 years ago
10.3390/cells10071588
Age-Dependent Hippocampal Proteomics in the APP/PS1 Alzheimer Mouse Model: A Comparative Analysis with Classical SWATH/DIA and directDIA Approaches
Cited by: 9
Author(s): Sophie J. F. van der Spek, Miguel A. Gonzalez‐Lozano, Frank Koopmans, Suzanne S M Miedema, Iryna Paliukhovich, August B. Smit, Ka Wan Li
Software Mentions: 1
Published: over 3 years ago
10.1534/g3.114.013003
Gene Expression in the Skin of Dogs Sensitized to the House Dust Mite <i>Dermatophagoides farinae</i>
Cited by: 17
Author(s): Paz Schamber, Rachel Schwab-Richards, Stefan Bauersachs, Ralf S. Mueller
Software Mentions: 1
Published: about 10 years ago
10.1534/g3.115.016626
Identification of eQTLs for Hepatic <i>Xbp1s</i> and <i>Socs3</i> Gene Expression in Mice Fed a High-Fat, High-Caloric Diet
Cited by: 3
Author(s): Sarina Pasricha, Jane P. Kenney-Hunt, Kristy A. Anderson, Nadereh Jafari, R Hall, Frank Lammert, James M. Cheverud, Richard M. Green
Software Mentions: 1
Published: over 9 years ago