10.1038/s41598-021-96778-7

Raspberry ketone diet supplement reduces attraction of sterile male Queensland fruit fly to cuelure by altering expression of chemoreceptor genes
Cited by: 2
Author(s): Mohammed Abul Monjur Khan, Nandan P. Deshpande, Lucas A. Shuttleworth, Terry Osborne, Damian Collins, Marc R. Wilkins, Geoff M. Gurr, Olivia L. Reynolds
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-98536-1

Dissection of the bone marrow microenvironment in hairy cell leukaemia identifies prognostic tumour and immune related biomarkers
Cited by: 6
Author(s): Rachel Koldej, Ashvind Prabahran, Chin Wee Tan, Ashley P Ng, Melissa J. Davis, David Ritchie
Software Mentions: 2
Published: almost 5 years ago

10.1126/science.aau4732

Effects of microbiota-directed foods in gnotobiotic animals and undernourished children
Cited by: 263
Author(s): Jeanette L. Gehrig, Siddarth Venkatesh, Hung-Sheng Chang, Matthew C. Hibberd, Vanderlene L. Kung, Jiye Cheng, Robert Y. Chen, Sathish Subramanian, Carrie A. Cowardin, Martin Meier, David O’Donnell, Michael Talcott, Larry D. Spears, Clay F. Semenkovich, Bernard Henrissat, Richard J. Giannone, Robert L. Hettich, Olga Ilkayeva, Michael J. Muehlbauer, Christopher B. Newgard, Christopher Sawyer, Richard D. Head, Dmitry A. Rodionov, Aleksandr A. Arzamasov, Semen A. Leyn, Andrei L. Osterman, Iqbal Hossain, M Munirul Islam, Nuzhat Choudhury, Shafiqul Alam Sarker, Sayeeda Huq, Imteaz Mahmud, Ishita Mostafa, Mustafa Mahfuz, Michael J. Barratt, Tahmeed Ahmed, Jeffrey I. Gordon
Software Mentions: 2
Published: about 7 years ago

10.1186/s13287-017-0602-6

Global gene expression profiling and senescence biomarker analysis of hESC exposed to H2O2 induced non-cytotoxic oxidative stress
Cited by: 7
Author(s): M. Barandalla, Hui Shi, Hui Xiao, Silvia Colleoni, Cesare Galli, Píetro Lió, Matthew Trotter, Giovanna Lazzari
Software Mentions: 2
Published: about 9 years ago

10.1186/s13287-019-1235-8

microRNA-301b-3p downregulation underlies a novel inhibitory role of long non-coding RNA MBNL1-AS1 in non-small cell lung cancer
Cited by: 34
Author(s): Peng Li, Wei Xing, Jinliang Xu, Dandan Yuan, Guanghui Liang, Baoxing Liu, MA Hollywood
Software Mentions: 2
Published: over 7 years ago

10.1186/s13287-019-1475-7

Acute myeloid leukemia cells secrete microRNA-4532-containing exosomes to mediate normal hematopoiesis in hematopoietic stem cells by activating the LDOC1-dependent STAT3 signaling pathway
Cited by: 25
Author(s): Chen Zhao, Feng Du, Yang Zhao, Shanshan Wang, Ling Qi
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13287-020-1580-7

Exosomal microRNA-144 from bone marrow-derived mesenchymal stem cells inhibits the progression of non-small cell lung cancer by targeting CCNE1 and CCNE2
Cited by: 41
Author(s): Yuan Liu, Dalin Zhang, Linlin Li, Xin Tian, Yuwei Zhao, Rui Ma, Jie Du
Software Mentions: 2
Published: over 6 years ago

10.1186/s13287-020-01980-5

Investigation of de novo mutations in a schizophrenia case-parent trio by induced pluripotent stem cell-based in vitro disease modeling: convergence of schizophrenia- and autism-related cellular phenotypes
Cited by: 11
Author(s): Edit Hathy, Eszter Szabó, Nóra Varga, Zsuzsa Erdei, Csongor Tordai, Boróka Czehlár, Máté Baradits, Bálint Jezsó, Júlia Koller, László Nagy, Mária Judit Molnár, László Homolya, Zsófia Nemoda, Ágota Apáti, János Réthelyi
Software Mentions: 2
Published: almost 6 years ago

10.1007/s12015-017-9790-9

Gene Network Analysis of Interstitial Macrophages After Treatment with Induced Pluripotent Stem Cells Secretome (iPSC-cm) in the Bleomycin Injured Rat Lung
Cited by: 13
Author(s): Luca Tamò, Cédric Simillion, Youssef Hibaoui, Anis Féki, Mathias Gugger, Antje Prasse, B Jäger, Torsten Goldmann, Thomas Geiser, Amiq Gazdhar
Software Mentions: 2
Published: over 8 years ago

10.1089/scd.2017.0294

Modulation of Differentiation Processes in Murine Embryonic Stem Cells Exposed to Parabolic Flight-Induced Acute Hypergravity and Microgravity
Cited by: 12
Author(s): Aviseka Acharya, Sonja Brungs, Margit Henry, Tamara Rotshteyn, Nirmala Singh Yaduvanshi, Lucia Wegener, Simon Jentzsch, Juergen Hescheler, Ruth Hemmersbach, Hélène Bœuf, Agapios Sachinidis
Software Mentions: 2
Published: over 8 years ago

10.1155/2017/2362630

Molecular Genetic Analysis of Human Endometrial Mesenchymal Stem Cells That Survived Sublethal Heat Shock
Cited by: 10
Author(s): Alexander E. Vinogradov, М. А. Шилина, Olga V. Anatskaya, Л. Л. Алексеенко, Irina Fridlyanskaya, А. Ю. Красненко, A Kim, Dmitriy Korostin, V Ilynsky, Artem Elmuratov, O Tsyganov, Т. М. Гринчук, Nikolay Nikolsky
Software Mentions: 2
Published: over 9 years ago

10.7150/thno.48247

MED13L integrates Mediator-regulated epigenetic control into lung cancer radiosensitivity
Cited by: 17
Author(s): Nasha Zhang, Ying Song, Yeyang Xu, Jiandong Liu, Yue Shen, Lixin Zhou, Jinming Yu, Ming Yang
Software Mentions: 2
Published: over 6 years ago

10.1111/1759-7714.13411

Exosome miR‐27a‐3p secreted from adipocytes targets ICOS to promote antitumor immunity in lung adenocarcinoma
Cited by: 13
Author(s): Xuehan Fan, Jingya Wang, Tingting Qin, Yujia Zhang, Wenting Liu, Kaiting Jiang, Dingzhi Huang
Software Mentions: 2
Published: over 6 years ago

10.1089/ten.tec.2016.0329

Spheroid Coculture of Hematopoietic Stem/Progenitor Cells and Monolayer Expanded Mesenchymal Stem/Stromal Cells in Polydimethylsiloxane Microwells Modestly Improves<i>In Vitro</i>Hematopoietic Stem/Progenitor Cell Expansion
Cited by: 42
Author(s): Kathryn Futrega, Kerry Atkinson, William B. Lott, Michael Doran
Software Mentions: 2
Published: over 9 years ago

10.1186/s12859-019-2849-7

Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets
Cited by: 76
Author(s): Tobias Neumann, Veronika A. Herzog, Matthias Muhar, Arndt von Haeseler, Johannes Zuber, Stefan L. Ameres, Philipp Rescheneder
Software Mentions: 2
Published: over 7 years ago

10.3390/toxins9040124

Patterns of Gene Expression in Western Corn Rootworm (Diabrotica virgifera virgifera) Neonates, Challenged with Cry34Ab1, Cry35Ab1 and Cry34/35Ab1, Based on Next-Generation Sequencing
Cited by: 14
Author(s): Haichuan Wang, Seong‐il Eyun, Kanika Arora, Sek Yee Tan, Premchand Gandra, Etsuko N. Moriyama, Chitvan Khajuria, Jessica Jurzenski, Huarong Li, Maia Donahue, Kenneth E. Narva, Blair D. Siegfried
Software Mentions: 2
Published: over 9 years ago

10.3390/toxins12030203

Molecular Mechanism of Aflatoxin-Induced Hepatocellular Carcinoma Derived from a Bioinformatics Analysis
Cited by: 14
Author(s): Peirong Cai, Hao Zheng, Jinjin She, Na Feng, Hui Zou, Jianhong Gu, Yan Yuan, Zongping Liu, Zongping Liu, Jianchun Bian
Software Mentions: 2
Published: over 6 years ago

10.3390/toxins13020097

A Transcriptomic Approach to the Recruitment of Venom Proteins in a Marine Annelid
Cited by: 6
Author(s): Ana P. Rodrigo, Ana Rita Grosso, Pedro V. Baptista, Alexandra R. Fernandes, Pedro M. Costa
Software Mentions: 2
Published: over 5 years ago

10.1038/tp.2013.54

CD4+ but not CD8+ T cells revert the impaired emotional behavior of immunocompromised RAG-1-deficient mice
Cited by: 73
Author(s): Lorenza Rattazzi, Giuseppa Piras, M. Ono, Robert M. J. Deacon, Carmine Pariante, Fulvio D’Acquisto
Software Mentions: 2
Published: about 13 years ago

10.1038/tp.2013.111

Genome-wide DNA methylation analysis of human brain tissue from schizophrenia patients
Cited by: 261
Author(s): Leesa Wockner, Ernest P. Noble, Bruce R. Lawford, Ross McD. Young, C. Phillip Morris, Vicki Whitehall, Joanne Voisey
Software Mentions: 2
Published: over 12 years ago

10.1038/tp.2015.158

Transcriptomic and genetic studies identify NFAT5 as a candidate gene for cocaine dependence
Cited by: 16
Author(s): Noèlia Fernàndez‐Castillo, Judit Cabana‐Domínguez, Jordi Soriano, Cristina Sánchez-Mora, Carlos Roncero, Lara Grau-López, Elena Ros-Cucurull, Constanza Daigre, Marjolein M. J. Van Donkelaar, Barbara Franke, Miguel Casas, Marta Ribasés, Bru Cormand
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41398-018-0136-4

Analysis of 182 cerebral palsy transcriptomes points to dysregulation of trophic signalling pathways and overlap with autism
Cited by: 21
Author(s): Clare L. van Eyk, Mark Corbett, Alison Gardner, Bregje W.M. van Bon, J. L. Broadbent, Kelly Harper, Alastair H. MacLennan, Jozef Gécz
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.20542

Auxin production in the endosperm drives seed coat development in Arabidopsis
Cited by: 144
Author(s): Duarte D. Figueiredo, Rita A Batista, Pawel Roszak, Lars Hennig, Claudia Köhler
Software Mentions: 2
Published: almost 10 years ago

10.7554/eLife.20725

Dual leucine zipper kinase-dependent PERK activation contributes to neuronal degeneration following insult
Cited by: 49
Author(s): Martin Larhammar, Sarah Huntwork‐Rodriguez, Zhiyu Jiang, Hilda Solanoy, Arundhati Sengupta Ghosh, Bei Wang, Joshua S. Kaminker, Kevin Huang, Jeffrey Eastham-Anderson, Michael Siu, Zora Modrušan, Madeline M. Farley, Marc Tessier‐Lavigne, Joseph W. Lewcock, Trent A. Watkins
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.01460

miR-146a promotes the initiation and progression of melanoma by activating Notch signaling
Cited by: 99
Author(s): Matteo Forloni, Shaillay Kumar Dogra, Yujuan Dong, Darryl Conte, Jianhong Ou, Lihua Julie Zhu, April Deng, Meera Mahalingam, Michael R. Green, Narendra Wajapeyee
Software Mentions: 2
Published: over 12 years ago

10.7554/eLife.39982

The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response
Cited by: 76
Author(s): Sydney Lavoie, Kara L. Conway, Kara G. Lassen, Humberto Jijon, Pei Hui, Eunyoung Chun, Monia Michaud, Jessica Lang, Carey Ann Gallini Comeau, Jonathan M. Dreyfuss, Jonathan N. Glickman, Hera Vlamakis, Ashwin N. Ananthakrishnan, Aleksandar D. Kostic, Wendy S. Garrett, Ramnik J. Xavier
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.66608

KSR1- and ERK-dependent translational regulation of the epithelial-to-mesenchymal transition
Cited by: 10
Author(s): C. Mallikarjuna Rao, Danielle E. Frodyma, Siddesh Southekal, Robert A. Svoboda, Adrian R. Black, Chittibabu Guda, Tomohiro Mizutani, Hans Clevers, Keith R. Johnson, Kurt W. Fisher, Robert E. Lewis
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.27406

Histone H3G34R mutation causes replication stress, homologous recombination defects and genomic instability in S. pombe
Cited by: 33
Author(s): Rajesh K Yadav, Carolyn Jablonowski, Alfonso G. Fernandez, Brandon R Lowe, Ryan A. Henry, David Finkelstein, Kevin J Barnum, Alison L. Pidoux, Yin-Ming Kuo, Jie Huang, Matthew J. O’Connell, Andrew J. Andrews, Arzu Onar‐Thomas, Robin C. Allshire, Janet F. Partridge
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.18648

Maintenance of age in human neurons generated by microRNA-based neuronal conversion of fibroblasts
Cited by: 139
Author(s): Christine J. Huh, Bo Zhang, Matheus B. Victor, Sonika Dahiya, Luis Francisco Zirnberger Batista, Steve Horvath, Andrew S. Yoo
Software Mentions: 2
Published: almost 10 years ago

10.7554/eLife.63326

The mTORC1-mediated activation of ATF4 promotes protein and glutathione synthesis downstream of growth signals
Cited by: 80
Author(s): Margaret E. Torrence, Michael R. MacArthur, Aaron M. Hosios, Alexander J. Valvezan, John M. Asara, James R. Mitchell, Brendan D. Manning
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.01098

Growth hormone-releasing hormone disruption extends lifespan and regulates response to caloric restriction in mice
Cited by: 110
Author(s): Liou Y. Sun, Adam Spong, William R. Swindell, Yimin Fang, Cristal M. Hill, J Huber, Jacob D Boehm, Reyhan Westbrook, Roberto Salvatori, Andrzej Bartke
Software Mentions: 2
Published: almost 13 years ago

10.7554/eLife.57761

Genome-wide CRISPR screens of oral squamous cell carcinoma reveal fitness genes in the Hippo pathway
Cited by: 27
Author(s): Annie Wai Yeeng Chai, Pei San Yee, Stacey Price, Shi Mun Yee, Hui Mei Lee, Vivian Kh Tiong, Emanuel Gonçalvès, Fiona M. Behan, Jess Bateson, James Gilbert, Aik Choon Tan, Ultan McDermott, Mathew J. Garnett, Sok Ching Cheong
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.39823

A virus-packageable CRISPR screen identifies host factors mediating interferon inhibition of HIV
Cited by: 94
Author(s): Molly OhAinle, Louisa Helms, Jolien Vermeíre, Ferdinand Roesch, Daryl Humes, Ryan Basom, Jeffrey J. Delrow, Julie Overbaugh, Michael Emerman
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.23244

Prosurvival long noncoding RNA PINCR regulates a subset of p53 targets in human colorectal cancer cells by binding to Matrin 3
Cited by: 67
Author(s): Ritu Chaudhary, Berkley E. Gryder, Wendy S. Woods, Subramanian Mahadevan, Michael R. Jones, Xiao Ling Li, Lisa M. Miller Jenkins, Svetlana A. Shabalina, Min Mo, Mary Dasso, Yuan Yang, Lalage M. Wakefield, Yuelin J. Zhu, Susan M Frier, Branden S. Moriarity, Kannanganattu V. Prasanth, Pablo Pérez-Piñera, Ashish Lal
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.59686

Dichotomous role of the human mitochondrial Na+/Ca2+/Li+ exchanger NCLX in colorectal cancer growth and metastasis
Cited by: 35
Author(s): Trayambak Pathak, Maxime Guéguinou, Vonn Walter, Céline Delierneux, Martin Johnson, Xuexin Zhang, Ping Xin, Ryan E. Yoast, Scott M. Emrich, Gregory S. Yochum, Israel Sekler, Walter A. Koltun, Donald L. Gill, Nadine Hempel
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.04506

Heterochromatin assembly and transcriptome repression by Set1 in coordination with a class II histone deacetylase
Cited by: 25
Author(s): David R. Lorenz, Lauren F Meyer, Patrick J. R. Grady, Michelle M. Meyer, Hugh P. Cam
Software Mentions: 2
Published: almost 12 years ago

10.7554/eLife.04525

Mucosal effects of tenofovir 1% gel
Cited by: 40
Author(s): Florian Hladik, Adam Burgener, Lamar Ballweber, Raphaël Gottardo, Lucia Vojtech, Slim Fourati, Jiyan Dai, Mark J. Cameron, Johanna Strobl, Sean M. Hughes, Craig Hoesley, P. Andrew, Sherri Johnson, Jeanna Piper, David R. Friend, T. Blake Ball, Ross D. Cranston, Kenneth H. Mayer, M. Juliana McElrath, Ian McGowan
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.50670

GLI transcriptional repression regulates tissue-specific enhancer activity in response to Hedgehog signaling
Cited by: 29
Author(s): Rachel K. Lex, Zhicheng Ji, Kristin N. Falkenstein, Weiqiang Zhou, Joanna L Henry, Hongkai Ji, Steven A. Vokes
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.30325

Injury-induced perivascular niche supports alternative differentiation of adult rodent CNS progenitor cells
Cited by: 24
Author(s): Justyna Ulanska-Poutanen, Jakub Mieczkowski, Chao Zhao, Katarzyna Konarzewska, Beata Kaza, Hartmut B.F. Pohl, Łukasz Bugajski, Bożena Kamińska, Robin J.M. Franklin, Małgorzata Zawadzka
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms140611190

Angiotensin II Regulates microRNA-132/-212 in Hypertensive Rats and Humans
Cited by: 107
Author(s): Tilde V Eskildsen, Pia Jeppesen, Mikael Schneider, A. Yaël Nossent, Maria Boysen Sandberg, Pernille Hansen, Charlotte Harken Jensen, Morten Hartvig Hansen, Niels Marcussen, Lars Melholt Rasmussen, Peter Bie, Ditte Caroline Andersen, Søren Paludan Sheikh
Software Mentions: 2
Published: over 13 years ago

10.3390/ijms17040584

In Vitro Model for Hepatotoxicity Studies Based on Primary Human Hepatocyte Cultivation in a Perfused 3D Bioreactor System
Cited by: 18
Author(s): Fanny Knöspel, Frank Jacobs, Nora Freyer, Georg Damm, An De Bondt, Ilse Van den Wyngaert, Jan Snoeys, Mario Monshouwer, Marco Richter, Nadja Strahl, Daniel Seehofer, Katrin Zeilinger
Software Mentions: 2
Published: over 10 years ago

10.3390/ijms17050776

Integrated Analysis of Expression Profile Based on Differentially Expressed Genes in Middle Cerebral Artery Occlusion Animal Models
Cited by: 9
Author(s): Huaqiang Zhou, Zeting Qiu, Gao S, Qinchang Chen, Si Li, Wulin Tan, Xiaochen Liu, Zhongxing Wang
Software Mentions: 2
Published: over 10 years ago

10.3390/ijms18081674

Strategies towards Improved Feed Efficiency in Pigs Comprise Molecular Shifts in Hepatic Lipid and Carbohydrate Metabolism
Cited by: 20
Author(s): Henry Reyer, Michael Oster, Elizabeth Magowan, Dirk Dannenberger, Siriluck Ponsuksili, Klaus Wimmers
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms18112295

Inter-Species Host Gene Expression Differences in Response to Human and Avian Influenza A Virus Strains
Cited by: 9
Author(s): Biruhalem Taye, David Yeo, Raphael Tze Chuen Lee, Boon Huan Tan, Richard J. Sugrue, Sebastian Maurer‐Stroh
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijms19010234

Transcriptomics Evidence for Common Pathways in Human Major Depressive Disorder and Glioblastoma
Cited by: 13
Author(s): Yongfang Xie, Ling Wang, Zengyan Xie, Chuisheng Zeng, Kunxian Shu
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms19030851

A Comprehensive Analysis of Argonaute-CLIP Data Identifies Novel, Conserved and Species-Specific Targets of miR-21 in Human Liver and Hepatocellular Carcinoma
Cited by: 21
Author(s): Aaron B. Koenig, Juan M. Barajas, María Jose Guerrero, Kalpana Ghoshal
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms19124008

Oviposition by Spodoptera exigua on Solanum dulcamara Alters the Plant’s Response to Herbivory and Impairs Larval Performance
Cited by: 8
Author(s): Daniel Geuß, Tobias Lortzing, Jens Schwachtje, Joachim Kopka, Anke Steppuhn
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms19124106

Effects of Space Flight on Mouse Liver versus Kidney: Gene Pathway Analyses
Cited by: 17
Author(s): Timothy G. Hammond, Patricia Allen, Holly H. Birdsall
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20051118

Growth Factor Screening in Dystrophic Muscles Reveals PDGFB/PDGFRB-Mediated Migration of Interstitial Stem Cells
Cited by: 8
Author(s): J. Camps, Hanne Grosemans, Rik Gijsbers, Christa Maes, Maurilio Sampaolesi
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20143444

Long Non-coding RNAs as Important Biomarkers in Laryngeal Cancer and Other Head and Neck Tumours
Cited by: 61
Author(s): Alessia Maria Cossu, Laura Mosca, Silvia Zappavigna, Gabriella Misso, Marco Bocchetti, Federica De Micco, Lucio Quagliuolo, Marina Porcelli, Michele Caraglia, Mariarosaria Boccellino
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms20153651

MicroRNA Profiling During Neural Differentiation of Induced Pluripotent Stem Cells
Cited by: 21
Author(s): Katarzyna Kulcenty, Joanna Wróblewska, Marcin Ruciński, Emilia Kozłowska, Karol Jopek, Wiktoria Maria Suchorska
Software Mentions: 2
Published: about 7 years ago

10.18632/oncotarget.16437

Promoter DNA methylation analysis reveals a combined diagnosis of CpG-based biomarker for prostate cancer
Cited by: 10
Author(s): Yuanyuan Tang, Sanyuan Jiang, Yinmin Gu, Weidong Li, Zengnan Mo, Yuanjie Huang, Tianyu Li, Yanling Hu
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.19848

IL2RG, identified as overexpressed by RNA-seq profiling of pancreatic intraepithelial neoplasia, mediates pancreatic cancer growth
Cited by: 13
Author(s): Michael Ayars, Eileen O’Sullivan, Anne M. Macgregor-Das, Koji Shindo, Haeryoung Kim, Michael Borges, Jun Yu, Ralph H. Hruban, Michael Goggins
Software Mentions: 2
Published: about 9 years ago

10.18632/oncotarget.14208

DNA methylation landscape of hepatoblastomas reveals arrest at early stages of liver differentiation and cancer-related alterations
Cited by: 20
Author(s): Mariana Maschietto, T. Rodrigues, André Yoshiaki Kashiwabara, Érica Sara Souza de Araújo, Talita Ferreira Marques Aguiar, Cecília Maria Lima da Costa, Isabela Werneck da Cunha, Luciana dos Reis Vasques, Mônica Cypriano, Helena Brentani, Sílvia Regina Caminada de Toledo, P. L. Pearson, Dirce Maria Carraro, Carla Rosenberg, Ana Cristina Victorino Krepischi
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.18292

EGR1 regulates cellular metabolism and survival in endocrine resistant breast cancer
Cited by: 26
Author(s): Ayesha N. Shajahan-Haq, Simina M. Boca, Lü Jin, Krithika Bhuvaneshwar, Yuriy Gusev, Amrita K. Cheema, Diane M. Demas, Kristopher S. Raghavan, Ryan D. Michalek, Subha Madhavan, Robert Clarke
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.21911

Dietary folate levels alter the kinetics and molecular mechanism of prostate cancer recurrence in the CWR22 model
Cited by: 11
Author(s): Hayley C. Affronti, Mark D. Long, Spencer R. Rosario, Bryan M. Gillard, Ellen Karasik, Christoph S. Boerlin, Anthony J. Pellerite, Barbara A. Foster, Kristopher Attwood, Роберто Пили, John H. Wilton, Moray J. Campbell, Dominic J. Smiraglia
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.22236

EphA2 signaling is impacted by carcinoembryonic antigen cell adhesion molecule 1-L expression in colorectal cancer liver metastasis in a cell context-dependent manner
Cited by: 4
Author(s): Azadeh Arabzadeh, Kevin McGregor, Valérie Breton, Lauren Van Der Kraak, Uri David Akavia, Celia M.T. Greenwood, Nicole Beauchemin
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.22111

Coordinated downregulation of Spinophilin and the catalytic subunits of PP1, PPP1CA/B/C, contributes to a worse prognosis in lung cancer
Cited by: 14
Author(s): Eva M. Verdugo‐Sivianes, Lola E. Navas, Sonia Molina-Pinelo, Irene Ferrer, Álvaro Quintanal-Villalonga, J. Peinado, José Manuel García-Heredia, Blanca Felipe‐Abrio, Sandra Muñoz-Galván, Juan Marín, Luis M. Montuenga, Luís Paz-Ares, Amancio Carnero
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.22347

Systemic bioinformatics analysis of recurrent aphthous stomatitis gene expression profiles
Cited by: 20
Author(s): Jian Wu, Zhengping Chen, Anquan Shang, Weiwei Wang, Chen Zong-ning, Yunjuan Tao, Yue Zhou, Wanxiang Wang
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.10611

Impact of DLK1-DIO3 imprinted cluster hypomethylation in smoker patients with lung cancer
Cited by: 35
Author(s): Sonia Molina-Pinelo, Ana Salinas, Nicolás Moreno-Mata, Irene Ferrer, Rocío Suárez, Eduardo Andrés-León, Manuel Rodríguez-Paredes, Julian Gutekunst, Eloísa Jantus‐Lewintre, Carlos Camps, Amancio Carnero, Luís Paz-Ares
Software Mentions: 2
Published: about 10 years ago

10.18632/oncotarget.23163

Elucidating mechanisms of sunitinib resistance in renal cancer: an integrated pathological-molecular analysis
Cited by: 22
Author(s): Henriett Butz, Qiang Ding, Roy Nofech‐Mozes, Zsuzsanna Lichner, Heyu Ni, George M. Yousef
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.24070

Differentially expressed microRNAs in lung adenocarcinoma invert effects of copy number aberrations of prognostic genes
Cited by: 8
Author(s): Tomáš Tokár, Chiara Pastrello, Varune Rohan Ramnarine, Chang-Qi Zhu, Kenneth J. Craddock, Larrisa A Pikor, Emily A. Vucic, Simon Vary, Frances A. Shepherd, Ming‐Sound Tsao, Wan L. Lam, Igor Jurišica
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.24843

A TRPV2 interactome-based signature for prognosis in glioblastoma patients
Cited by: 15
Author(s): Pau Doñate-Macián, Antonio Gómez, Irene R. Dégano, Alex Perálvarez‐Marín
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.24954

Similar expression profiles in CD34+ cells from chronic phase chronic myeloid leukemia patients with and without deep molecular responses to nilotinib
Cited by: 0
Author(s): Ami B. Patel, Thoralf Lange, Anthony D. Pomicter, Christopher J. Conley, Christina A. Harrington, Kimberly R. Reynolds, Todd W. Kelley, Thomas O’Hare, Michael W. Deininger
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.25420

Comparative molecular characterization of typical and exceptional responders in glioblastoma
Cited by: 14
Author(s): Kristin Wipfler, Adam Cornish, Chittibabu Guda
Software Mentions: 2
Published: about 8 years ago

10.18632/oncotarget.25945

Integrin α2β1 decelerates proliferation, but promotes survival and invasion of prostate cancer cells
Cited by: 23
Author(s): Marjaana Ojalill, Marjaana Parikainen, Pekka Rappu, Elina Aalto, Johanna Jokinen, Noora Virtanen, Elina Siljamäki, Jyrki Heino
Software Mentions: 2
Published: about 8 years ago

10.18632/oncotarget.27080

Methylation alteration of <i>SHANK1</i> as a predictive, diagnostic and prognostic biomarker for chronic lymphocytic leukemia
Cited by: 16
Author(s): Eleonora Loi, Loredana Moi, Antonio Fadda, Giannina Satta, Mariagrazia Zucca, Sonia Sanna, Shadi Amini Nia, Giuseppina Cabras, Marina Padoan, Corrado Magnani, Lucia Miligi, Sara Piro, Davide Gentilini, Maria Grazia Ennas, Melissa C. Southey, Graham G. Giles, Nicole Wong Doo, Pierluigi Cocco, Patrizia Zavattari
Software Mentions: 2
Published: about 7 years ago

10.18632/oncotarget.27679

Induction of phenotypic changes in HER2-postive breast cancer cells <i>in vivo</i> and <i>in vitro</i>
Cited by: 2
Author(s): Anastasia Frank-Kamenetskii, Julia Mook, Meredith Reeves, Corinne A. Boulanger, Thomas J. Meyer, Lauren E. Ragle, H. Caroline Jordan, Gilbert H. Smith, Brian W. Booth
Software Mentions: 2
Published: about 6 years ago

10.18632/oncotarget.27910

Effect of cell microenvironment on the drug sensitivity of hepatocellular cancer cells
Cited by: 3
Author(s): Bhaskar Bhattacharya, Daniel Q. Huang, Seng Hui Low, Gim Hwa Tan, Min Ji Han, Supriya Singh, Benny Tang, Sheng Chun Chang, Joey Sze Yun Lim, Mohd Feroz Mohd Omar, Yock Young Dan, Richie Soong
Software Mentions: 2
Published: over 5 years ago

10.1002/path.4212

Gene expression patterns unveil a new level of molecular heterogeneity in colorectal cancer
Cited by: 331
Author(s): Eva Budinska, Vlad Popovici, Sabine Tejpar, Dario Giorgini, Nicolas Lapique, Katarzyna Sikora, Antonio Fabio Di Narzo, Ping Yan, J. Graeme Hodgson, Scott L. Weinrich, Fred T. Bosman, Arnaud Roth, Mauro Delorenzi
Software Mentions: 2
Published: about 13 years ago

10.1002/path.4864

Derivation of marker gene signatures from human skin and their use in the interpretation of the transcriptional changes associated with dermatological disorders
Cited by: 22
Author(s): Barbara Shih, Ajit J. Nirmal, Denis J. Headon, Arne N. Akbar, Neil A. Mabbott, Tom C. Freeman
Software Mentions: 2
Published: over 9 years ago

10.1002/cjp2.195

Chromosome 2q gain and epigenetic silencing of <scp>GATA3</scp> in microglandular adenosis of the breast
Cited by: 3
Author(s): Martin Radner, Jana Lisa van Luttikhuizen, Stephan Bartels, Janin Bublitz, Isabel Grote, Luisa Rieger, Henriette Christgen, Helge Stark, Christopher Werlein, Marcel Lafos, Doris Steinemann, Ulrich Lehmann, Matthias Christgen, Hans Kreipe
Software Mentions: 2
Published: over 5 years ago

10.1098/rsob.150230

Auxin/AID versus conventional knockouts: distinguishing the roles of CENP-T/W in mitotic kinetochore assembly and stability
Cited by: 20
Author(s): Laura Wood, Daniel G Booth, Giulia Vargiu, Sachio Ohta, Flávia de Lima Alves, Kumiko Samejima, Tatsuo Fukagawa, Juri Rappsilber, William C. Earnshaw
Software Mentions: 2
Published: over 10 years ago

10.1098/rsob.190150

Multivariable regulation of gene expression plasticity in metazoans
Cited by: 11
Author(s): Long Xiao, Zhiguang Zhao, Fei He, Zhuo Du
Software Mentions: 2
Published: almost 7 years ago

10.1515/biol-2021-0052

Potential prognostic markers and significant lncRNA–mRNA co-expression pairs in laryngeal squamous cell carcinoma
Cited by: 4
Author(s): Junguo Wang, Dingding Liu, Yajun Gu, Han Zhou, Hui Li, Xiaohui Shen, Xiaoyun Qian
Software Mentions: 2
Published: over 5 years ago

10.1186/s12967-017-1235-3

Development of an objective gene expression panel as an alternative to self-reported symptom scores in human influenza challenge trials
Cited by: 5
Author(s): Julius Müller, Eneida Abreu Parizotto, Richard Antrobus, James N. Francis, Campbell Bunce, Amanda J. Stranks, Marshall Nichols, Micah T. McClain, Adrian V. S. Hill, Adaikalavan Ramasamy, Sarah C. Gilbert
Software Mentions: 2
Published: over 9 years ago

10.1186/s12967-021-02897-0

Vitamin D association with coagulation factors in polycystic ovary syndrome is dependent upon body mass index
Cited by: 4
Author(s): Abu Saleh Md Moin, Thozhukat Sathyapalan, Alexandra E. Butler, Stephen L. Atkin
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0019556

Technical Variability Is Greater than Biological Variability in a Microarray Experiment but Both Are Outweighed by Changes Induced by Stimulation
Cited by: 26
Author(s): Penelope A Bryant, Gordon K. Smyth, Roy M. Robins-Browne, Nigel Curtis
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0118226

Selection of Reference Genes for qPCR- and ddPCR-Based Analyses of Gene Expression in Senescing Barley Leaves
Cited by: 39
Author(s): Agnieszka Żmieńko, Anna Samelak-Czajka, Michał Góralski, Ewa Sobieszczuk‐Nowicka, Piotr Kozlowski, Marek Figlerowicz
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0039126

Transcriptional Responses of Resistant and Susceptible Fish Clones to the Bacterial Pathogen Flavobacterium psychrophilum
Cited by: 51
Author(s): Christelle Langevin, M. Mar Blanco, Samuel Martín, Luc Jouneau, Jean‐François Bernardet, Armel Houel, Aurélie Lunazzi, Éric Duchaud, Christian Michel, Edwige Quillet, Pierre Boudinot
Software Mentions: 1
Published: over 14 years ago

10.1098/rsob.170134

TGFβ-facilitated optic fissure fusion and the role of bone morphogenetic protein antagonism
Cited by: 28
Author(s): Max D. Knickmeyer, Juan L. Mateo, Priska Eckert, Eleni Roussa, Belal Rahhal, Aimée Zúñiga, Kerstin Krieglstein, Joachim Wittbrodt, Stephan Heermann
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0045899

Development, Characterization and Experimental Validation of a Cultivated Sunflower (Helianthus annuus L.) Gene Expression Oligonucleotide Microarray
Cited by: 28
Author(s): Paula Fernández, Marcelo Soria, David Blesa, Julio Dirienzo, Sebastián Moschen, Máximo Rivarola, Bernardo Clavijo, Sergio González, Lucila Peluffo, Dario Príncipi, Guillermo A. A. Dosio, Luis Aguirrezábal, Francisco García‐García, Ana Conesa, H. Esteban Hopp, Joaquı́n Dopazo, Ruth Amelia Heinz, Norma Paniego
Software Mentions: 1
Published: almost 14 years ago

10.1155/2013/617243

The Studies of Chlorogenic Acid Antitumor Mechanism by Gene Chip Detection: The Immune Pathway Gene Expression
Cited by: 32
Author(s): Tian Yi Kang, Hua Rong Yang, Jie Zhang, Dan Li, Jie Lin, Li Wang, Xiaoping Xu
Software Mentions: 1
Published: over 13 years ago

10.1186/s40104-020-00475-w

Dietary plant extracts modulate gene expression profiles in alveolar macrophages of pigs experimentally infected with porcine reproductive and respiratory syndrome virus
Cited by: 3
Author(s): Kwang‐Wook Kim, Peng Ji, Minho Song, Min‐Che Tung, David Bravo, J. E. Pettigrew, Yanhong Liu
Software Mentions: 1
Published: about 6 years ago

10.1186/s12866-019-1684-3

Temporal analysis of mRNA expression profiles in Orientia infected C3HeB/FeJ mouse
Cited by: 3
Author(s): Chien‐Chung Chao, Ruoting Yang, Zhiwen Zhang, Tatyana Belinskaya, Chye-Teik Chan, Stacy‐Ann Miller, Rasha Hammamieh, Marti Jett, Wei‐Mei Ching
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0033284

Genome-Wide DNA Methylation Indicates Silencing of Tumor Suppressor Genes in Uterine Leiomyoma
Cited by: 102
Author(s): Antònia Navarro, Ping Yin, Diana Monsivais, Simon Lin, Pan Du, Jian Jun Wei, Serdar E. Bulun
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2180-12-9

Interleukin-8 is the single most up-regulated gene in whole genome profiling of H. pylori exposed gastric epithelial cells
Cited by: 67
Author(s): Lars Lohne Eftang, Ying Esbensen, Tone Tannæs, Ida Rashida Khan Bukholm, Geir Bukholm
Software Mentions: 1
Published: over 14 years ago

10.3390/ijms20071797

Altered Glutamate Receptor Ionotropic Delta Subunit 2 Expression in Stau2-Deficient Cerebellar Purkinje Cells in the Adult Brain
Cited by: 8
Author(s): Helena F. Pernice, Rico Schieweck, Mehrnoosh Jafari, Tobias Straub, Martin Bilban, Michael Kiebler, Bastian Popper
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0035119

Seasonal Changes in Patterns of Gene Expression in Avian Song Control Brain Regions
Cited by: 42
Author(s): Christopher K. Thompson, John Meitzen, Kirstin Replogle, Jenny Drnevich, Karin Lent, Anne Marie Wissman, Federico M. Farin, Theo K. Bammler, Richard P. Beyer, David F. Clayton, David J. Perkel, Eliot A. Brenowitz
Software Mentions: 1
Published: over 14 years ago

10.1074/jbc.RA120.015585

Agonist-independent Gαz activity negatively regulates beta-cell compensation in a diet-induced obesity model of type 2 diabetes
Cited by: 14
Author(s): Michael D. Schaid, Cara L Green, Darby Peter, Shannon J. Gallagher, Erin Guthery, Kathryn Carbajal, Jeffrey M. Harrington, Grant M. Kelly, A. Reuter, Molly L. Wehner, Allison L. Brill, Joshua C. Neuman, Dudley W. Lamming, Michelle E. Kimple
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100979

Neurological impairment caused by Schistosoma mansoni systemic infection exhibits early features of idiopathic neurodegenerative disease
Cited by: 3
Author(s): Juciano Gasparotto, Mário Roberto Senger, Emílio Telles de Sá Moreira, Pedro Ozorio Brum, Flávio Gabriel Carazza Kessler, Daniel Oppermann Peixoto, Alana Castro Panzenhagen, Lin Kooi Ong, Marlene Campos Soares, Patrícia Alves Reis, Giuliana Viegas Schirato, Walter C. G. Valente, Bogar Omar Araújo Montoya, Floriano P. Silva, José Cláudio Fonseca Moreira, Felipe Dal‐Pizzol, Hugo C. Castro‐Faria‐Neto, Daniel Pens Gelain
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0006718

Identification of Keratinocyte Growth Factor as a Target of microRNA-155 in Lung Fibroblasts: Implication in Epithelial-Mesenchymal Interactions
Cited by: 190
Author(s): Nicolas Pottier, Thomas Maurin, B. Chevalier, Marie-Pierre Puisségur, Kévin Lebrigand, Karine Robbe-Sermesant, Thomas Bertero, Christian L. Lino Cardenas, Elisabeth Courcot, Géraldine Rios, Sandra Fourré, Jean-Marc Lo-Guidice, Brice Marcet, Bruno Cardinaud, Pascal Barbry, Bernard Mari
Software Mentions: 1
Published: about 17 years ago

10.1186/s13036-019-0193-0

Exosomes derived from microRNA-138-5p-overexpressing bone marrow-derived mesenchymal stem cells confer neuroprotection to astrocytes following ischemic stroke via inhibition of LCN2
Cited by: 96
Author(s): Yiming Deng, Duanduan Chen, Feng Gao, Hong Liu, Guojun Zhang, Xuan Sun, Lian Liu, Dapeng Mo, Ning Ma, Ligang Song, Xiaochuan Huo, Tianyi Yan, Jingbo Zhang, Zhongrong Miao
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20081944

Acute Effects of Single Doses of Bonito Fish Peptides and Vitamin D on Whole Blood Gene Expression Levels: A Randomized Controlled Trial
Cited by: 4
Author(s): Frédéric Guénard, Hélène Jacques, Claudia Gagnon, André Marette, Marie‐Claude Vohl
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0190334

Stage-specific IFN-induced and IFN gene expression reveal convergence of type I and type II IFN and highlight their role in both acute and chronic stage of pathogenic SIV infection
Cited by: 10
Author(s): Nadia Echebli, Nicolas Tchitchek, Stéphanie Dupuy, Timothée Bruel, Caroline Passaes, Nathalie Bosquet, Roger Le Grand, Christine Bourgeois, Benoît Favier, Rémi Cheynier, Olivier Lambotte, Bruno Vaslin
Software Mentions: 1
Published: over 8 years ago

10.1186/1423-0127-17-64

Overexpression of hTERT increases stem-like properties and decreases spontaneous differentiation in human mesenchymal stem cell lines
Cited by: 88
Author(s): Chih–Chien Tsai, Chunli Chen, Hwa-Chung Liu, Yi-Ting Lee, Hsei–Wei Wang, Lein-Tuan Hou, Shih‐Chieh Hung
Software Mentions: 1
Published: about 16 years ago

10.1186/1755-8794-4-67

Gene expression during normal and FSHD myogenesis
Cited by: 81
Author(s): Koji Tsumagari, Shao-Chi Chang, Michelle Lacey, Carl Baribault, Sridar V. Chittur, Janet E. Sowden, Rabi Tawil, Gregory E. Crawford, Melanie Ehrlich
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12929-019-0595-9

RETRACTED ARTICLE: Circular RNA circ_0003204 inhibits proliferation, migration and tube formation of endothelial cell in atherosclerosis via miR-370-3p/TGFβR2/phosph-SMAD3 axis
Cited by: 93
Author(s): Shanchao Zhang, Guang-Jing Song, Jing Yuan, Shan Qiao, Shan Xu, Zhihua Si, Yang Yang, Xuxu Xu, Aihua Wang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0213078

Differential expression of miRNAs in acute myeloid leukemia quantified by Nextgen sequencing of whole blood samples
Cited by: 13
Author(s): Aakriti Pandita, Poornima Ramadas, Aarati Poudel, Nibal Saad, Ankit Anand, Alina Basnet, Dongliang Wang, Frank A. Middleton, Diana M. Gilligan
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0127003

Level of Fatty Acid Binding Protein 5 (FABP5) Is Increased in Sputum of Allergic Asthmatics and Links to Airway Remodeling and Inflammation
Cited by: 30
Author(s): Hille Suojalehto, Pia Anneli Sofia Kinaret, Maritta Kilpeläinen, Elina Toskala, Niina Ahonen, Henrik Wolff, Harri Alenius, Anne Puustinen
Software Mentions: 1
Published: over 11 years ago