10.1186/s13040-018-0163-y

A novel joint analysis framework improves identification of differentially expressed genes in cross disease transcriptomic analysis
Cited by: 6
Author(s): Wenyi Qin, Hui Liu
Software Mentions: 2
Published: over 8 years ago

10.1186/1756-0381-7-27

Combining functional genomics strategies identifies modular heterogeneity of breast cancer intrinsic subtypes
Cited by: 2
Author(s): Nima Pouladi, Richard Cowper-Sal·lari, Jason H. Moore
Software Mentions: 2
Published: almost 12 years ago

10.1002/mnfr.201900101

Integrated Analys of High‐Fat Challenge‐Induced Changes in Blood Cell Whole‐Genome Gene Expression
Cited by: 3
Author(s): Juri C. Matualatupauw, Colm O’Grada, Maria Hughes, Helen M. Roche, Lydia A. Afman, Jildau Bouwman
Software Mentions: 2
Published: almost 7 years ago

10.1002/mnfr.201600141

Maternal exposure to a Western-style diet causes differences in intestinal microbiota composition and gene expression of suckling mouse pups
Cited by: 32
Author(s): Wilma T. Steegenga, Mona Mischke, Carolien Lute, Mark V. Boekschoten, Ágnes Lendvai, Maurien Pruis, Henkjan J. Verkade, Bert J. M. van de Heijning, Jos Boekhorst, Harro M. Timmerman, Torsten Plösch, Michael Müller, Guido Hooiveld
Software Mentions: 2
Published: about 10 years ago

10.7554/eLife.66608

KSR1- and ERK-dependent translational regulation of the epithelial-to-mesenchymal transition
Cited by: 10
Author(s): C. Mallikarjuna Rao, Danielle E. Frodyma, Siddesh Southekal, Robert A. Svoboda, Adrian R. Black, Chittibabu Guda, Tomohiro Mizutani, Hans Clevers, Keith R. Johnson, Kurt W. Fisher, Robert E. Lewis
Software Mentions: 2
Published: over 5 years ago

10.1136/bmjpo-2017-000092

Peripheral blood RNA gene expression in children with pneumococcal meningitis: a prospective case–control study
Cited by: 18
Author(s): Benard W. Kulohoma, Fiona Marriage, Olga Vasieva, Limangeni Mankhambo, Kha Minh Nguyen, Malcolm E. Molyneux, Elizabeth Molyneux, Philip J. Day, Enitan D. Carrol
Software Mentions: 2
Published: about 9 years ago

10.1002/1878-0261.13035

Sex disparity in acute myeloid leukaemia with <i>FLT3</i> internal tandem duplication mutations: implications for prognosis
Cited by: 10
Author(s): Monica Hellesøy, Caroline Engen, Tim Grob, Bob Löwenberg, Peter J.M. Valk, Bjørn Tore Gjertsen
Software Mentions: 2
Published: about 5 years ago

10.1136/bmjdrc-2020-001441

Metabolic recovery after weight loss surgery is reflected in serum microRNAs
Cited by: 15
Author(s): Susana Sangiao‐Alvarellos, Konstantinos Theofilatos, Temo Barwari, Clemens Gutmann, Kaloyan Takov, Bhawana Singh, Paula Juiz-Valiña, Bárbara María Varela-Rodriguez, Elena Outeiriño-Blanco, Elisa Duregotti, Anna Zampetaki, Lukas Lunger, Christoph Ebenbichler, Herbert Tilg, María Jesús García-Brao, Peter Willeit, Enrique Mena, Stefan Kiechl, Fernando Cordido, Manuel Mayr
Software Mentions: 2
Published: almost 6 years ago

10.1002/1878-0261.12196

Serum amyloid A1 in combination with integrin αVβ3 increases glioblastoma cells mobility and progression
Cited by: 24
Author(s): Ching Yu Lin, Shun Tai Yang, Shing Chuan Shen, Yi Chen Hsieh, Fei Ting Hsu, Cheng-Yu Chen, Yung Hsiao Chiang, Jian Ying Chuang, Kai Yun Chen, Todd Hsu, Wan Chong Leong, Yu Su, Wen-Liang Lo, Yung‐Sung Yeh, Yudha Nur Patria, Hsiu Ming Shih, Che-Chang Chang, Szu Yi Chou
Software Mentions: 2
Published: over 8 years ago

10.1186/s12917-021-02763-7

Metabolic profile distinguishes laminitis-susceptible and -resistant ponies before and after feeding a high sugar diet
Cited by: 5
Author(s): Julien Delarocque, Dania Reiche, Alexandra Meier, Tobias Warnken, Karsten Feige, Martin N. Sillence
Software Mentions: 2
Published: over 5 years ago

10.1177/1744806920966902

Enrichment of genomic pathways based on differential DNA methylation profiles associated with chronic musculoskeletal pain in older adults: An exploratory study
Cited by: 6
Author(s): Soamy Montesino-Goicolea, P. P. Sinha, Zhiguang Huo, Asha Rani, Thomas C. Foster
Software Mentions: 2
Published: over 6 years ago

10.1111/mpp.12048

Transcriptomic characterization of two major <i><scp>F</scp>usarium</i> resistance quantitative trait loci (<scp>QTL</scp>s), <i><scp>F</scp>hb1</i> and <i><scp>Q</scp>fhs.ifa‐<scp>5A</scp></i>, identifies novel candidate genes
Cited by: 101
Author(s): Wolfgang Schweiger, Barbara Steiner, Christian Ametz, Gerald Siegwart, Gerlinde Wiesenberger, Franz Berthiller, Marc Lemmens, Haiyan Jia, Gerhard Adam, Gary J. Muehlbauer, David P. Kreil, Hermann Buerstmayr
Software Mentions: 2
Published: over 13 years ago

10.1038/s41380-018-0255-6

Integrative approach to sporadic Alzheimer’s disease: deficiency of TYROBP in cerebral Aβ amyloidosis mouse normalizes clinical phenotype and complement subnetwork molecular pathology without reducing Aβ burden
Cited by: 52
Author(s): Jean‐Vianney Haure‐Mirande, Minghui Wang, Mickaël Audrain, Tomas Fanutza, Soong Ho Kim, Szilvia Heja, Ben Readhead, Joel T. Dudley, Robert D. Blitzer, Eric E. Schadt, Bin Zhang, Sam Gandy, Michelle E. Ehrlich
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41380-019-0449-6

Genome-wide methylation in alcohol use disorder subjects: implications for an epigenetic regulation of the cortico-limbic glucocorticoid receptors (NR3C1)
Cited by: 49
Author(s): Eleonora Gatta, Dennis R. Grayson, James Auta, Vikram Saudagar, Erbao Dong, Ying Chen, Harish R. Krishnan, Jenny Drnevich, Subhash C. Pandey, Alessandro Guidotti
Software Mentions: 2
Published: about 7 years ago

10.15252/msb.20145120

Pathway connectivity and signaling coordination in the yeast stress‐activated signaling network
Cited by: 82
Author(s): Deborah Chasman, Yi-Hsuan Ho, David B. Berry, Corey M. Nemec, Matthew E. MacGilvray, James Hose, Anna E. Merrill, M Violet Lee, Jessica L. Will, Joshua J. Coon, Aseem Z. Ansari, Mark Craven, Audrey P. Gasch
Software Mentions: 2
Published: almost 12 years ago

10.1186/1752-0509-7-134

Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways
Cited by: 8
Author(s): Jon Pey, Kaspar Valgepea, Ángel Rubio, John E. Beasley, Francisco J. Planes
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12918-017-0524-z

Meta-analysis of human gene expression in response to Mycobacterium tuberculosis infection reveals potential therapeutic targets
Cited by: 45
Author(s): Zhang Wang, Seda Arat, Michal Magid-Slav, James R. Brown
Software Mentions: 2
Published: over 8 years ago

10.1186/1752-0509-5-105

Construction of a computable cell proliferation network focused on non-diseased lung cells
Cited by: 63
Author(s): Jurjen W. Westra, Walter K. Schlage, Brian P. Frushour, Stephan Gebel, Natalie L. Catlett, Wanjiang Han, Sean Eddy, Arnd Hengstermann, Andrea Matthews, Carole Mathis, Rosemarie B. Lichtner, Carine Poussin, Marja Talikka, Emilija Veljkovic, Aaron A. Van Hooser, Benjamin Chun‐Yu Wong, Michael J. Maria, Manuel C. Peitsch, Renée Deehan, Julia Hoeng
Software Mentions: 2
Published: about 15 years ago

10.1186/1752-0509-2-16

Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants
Cited by: 102
Author(s): David J. Weston, Lee E. Gunter, Alistair Rogers, Stan D. Wullschleger
Software Mentions: 2
Published: over 18 years ago

10.15252/msb.20178131

Quantifying compartment‐associated variations of protein abundance in proteomics data
Cited by: 10
Author(s): Luca Parca, Martin Beck, Peer Bork, Alessandro Ori
Software Mentions: 2
Published: about 8 years ago

10.1186/1752-0509-8-S4-S1

Complex-based analysis of dysregulated cellular processes in cancer
Cited by: 18
Author(s): Sriganesh Srihari, Piyush B. Madhamshettiwar, Sarah Song, Chao Liu, Peter T. Simpson, Kum Kum Khanna, Mark A. Ragan
Software Mentions: 2
Published: over 12 years ago

10.7554/eLife.27406

Histone H3G34R mutation causes replication stress, homologous recombination defects and genomic instability in S. pombe
Cited by: 33
Author(s): Rajesh K Yadav, Carolyn Jablonowski, Alfonso G. Fernandez, Brandon R Lowe, Ryan A. Henry, David Finkelstein, Kevin J Barnum, Alison L. Pidoux, Yin-Ming Kuo, Jie Huang, Matthew J. O’Connell, Andrew J. Andrews, Arzu Onar‐Thomas, Robin C. Allshire, Janet F. Partridge
Software Mentions: 2
Published: about 9 years ago

10.1186/s12918-016-0373-1

DMirNet: Inferring direct microRNA-mRNA association networks
Cited by: 4
Author(s): Minsu Lee, HyungJune Lee
Software Mentions: 2
Published: almost 10 years ago

10.1186/1752-0509-5-168

A computable cellular stress network model for non-diseased pulmonary and cardiovascular tissue
Cited by: 75
Author(s): Walter K. Schlage, Jurjen W. Westra, Stephan Gebel, Natalie L. Catlett, Carole Mathis, Brian P. Frushour, Arnd Hengstermann, Aaron A. Van Hooser, Carine Poussin, Ben Wong, Michael Lietz, Jennifer Park, David A. Drubin, Emilija Veljkovic, Manuel C. Peitsch, Julia Hoeng, Renée Deehan
Software Mentions: 2
Published: almost 15 years ago

10.1186/1752-0509-8-72

Metabolomics of ApcMin/+ mice genetically susceptible to intestinal cancer
Cited by: 14
Author(s): Jean-Eudes Dazard, Yana Sandlers, Stephanie K. Doerner, Nathan A. Berger, Henri Brunengraber
Software Mentions: 2
Published: over 12 years ago

10.1186/s12918-015-0243-2

Prediction of drugs having opposite effects on disease genes in a directed network
Cited by: 18
Author(s): Hasun Yu, Sungji Choo, Junseok Park, Jin‐Myung Jung, Yeeok Kang, Doheon Lee
Software Mentions: 2
Published: over 10 years ago

10.15252/msb.20209506

Integrated regulatory models for inference of subtype‐specific susceptibilities in glioblastoma
Cited by: 3
Author(s): Yunpeng Liu, Ning Shi, Aviv Regev, Shan He, Michael T. Hemann
Software Mentions: 2
Published: about 6 years ago

10.1016/j.omtm.2020.06.008

Quantitative Hybrid Cardiac [18F]FDG-PET-MRI Images for Assessment of Cardiac Repair by Preconditioned Cardiosphere-Derived Cells
Cited by: 9
Author(s): Johannes Winkler, Dominika Lukovic, Julia Mester-Tonczar, Katrin Zlabinger, Alfred Gugerell, Noémi Pávó, András Jakab, Zsuzsanna Szankai, Denise Traxler, Cláudia Müller, Andreas Spannbauer, Martin Riesenhuber, Ena Hašimbegović, James Dawkins, Matthias Zimmermann, Hendrik Jan Ankersmit, Eduardo Marbán, Mariann Gyöngyösi
Software Mentions: 2
Published: about 6 years ago

10.1016/j.omtm.2020.04.017

Novel Non-integrating DNA Nano-S/MAR Vectors Restore Gene Function in Isogenic Patient-Derived Pancreatic Tumor Models
Cited by: 15
Author(s): Matthias Bozza, Edward W. Green, Elisa Espinet, Alice De Roia, Corinna Klein, Vanessa Vogel, Rienk Offringa, James A. Williams, Martin R. Sprick, Richard P. Harbottle
Software Mentions: 2
Published: over 6 years ago

10.1016/j.omtn.2018.05.003

Differential Co-expression and Regulatory Network Analysis Uncover the Relapse Factor and Mechanism of T Cell Acute Leukemia
Cited by: 18
Author(s): Mei Luo, Qiong Zhang, Mengxuan Xia, Feifei Hu, Zhaowu Ma, Zehua Chen, An‐Yuan Guo
Software Mentions: 2
Published: about 8 years ago

10.1016/j.omtn.2019.12.036

Silencing lncRNA AGAP2-AS1 Upregulates miR-195-5p to Repress Migration and Invasion of EC Cells via the Decrease of FOSL1 Expression
Cited by: 35
Author(s): Shuxin Shen, Ké Li, Ying Liu, Xianben Liu, Baoxing Liu, Yue Ba, Wei Xing
Software Mentions: 2
Published: over 6 years ago

10.1016/j.omtn.2018.11.017

Posttranscriptional Regulation of 14q32 MicroRNAs by the CIRBP and HADHB during Vascular Regeneration after Ischemia
Cited by: 21
Author(s): Angela Downie Ruiz Velasco, S. Welten, Eveline A. C. Goossens, Paul H.A. Quax, Juri Rappsilber, Gracjan Michlewski, A. Yaël Nossent
Software Mentions: 2
Published: over 7 years ago

10.1016/j.omtn.2020.10.043

Endometrial cell-derived small extracellular vesicle miR-100-5p promotes functions of trophoblast during embryo implantation
Cited by: 26
Author(s): Qiang Tan, Shuang Shi, Jingjie Liang, Dingren Cao, Shaoyu Wang, Zhengguang Wang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41385-020-0277-7

Deficiency in the glycosyltransferase Gcnt1 increases susceptibility to tuberculosis through a mechanism involving neutrophils
Cited by: 17
Author(s): Kaori L. Fonseca, Ana Raquel Maceiras, Rita Matos, Luísa Simões-Costa, Jeremy Sousa, Baltazar Cá, Leandro Barros, Ana Fernandes, Stefan Mereiter, R. L. Reis, Joana Gomes, Gustavo Tapia, Paula Rodríguez-Martínez, Montse Martín-Céspedes, Sergo Vashakidze, Shota Gogishvili, Keti Nikolaishvili, Rui Appelberg, Fátima Gärtner, Pedro Rodrigues, Cristina Vilaplana, Celso A. Reis, Ana Magalhães, Margarida Saraiva
Software Mentions: 2
Published: about 6 years ago

10.1038/s41385-019-0209-6

Impact of chemokine C–C ligand 27, foreskin anatomy and sexually transmitted infections on HIV-1 target cell availability in adolescent South African males
Cited by: 11
Author(s): Clive M. Gray, Kyle Leonard O’Hagan, Ramón Lorenzo-Redondo, Abraham J. Olivier, Sylvie Amu, Nyaradzo T. L. Chigorimbo‐Murefu, Rushil Harryparsad, Shorok Sebaa, Lungile Maziya, Janan Dietrich, Kennedy Otwombe, Neil Martinson, Selena Ferrian, Nonhlanhla N. Mkhize, David A. Lewis, Dirk Lang, Ann M. Carias, Heather B. Jaspan, Douglas P. Wilson, Marcus McGilvray, Gianguido C. Cianci, Meegan R. Anderson, Minh Dinh, Anna‐Lise Williamson, Jo Ann S Passmore, Francesca Chiodi, Thomas J. Hope
Software Mentions: 2
Published: over 6 years ago

10.1177/1352458520943768

Methylome and transcriptome signature of bronchoalveolar cells from multiple sclerosis patients in relation to smoking
Cited by: 11
Author(s): Mikael V. Ringh, Michael Hagemann-Jensen, Maria Needhamsen, Susanna Kullberg, Jan Wahlström, Johan Grünewald, Boel Brynedal, Maja Jagodic, Tomas J. Ekström, Johan Öckinger, Lara Kular
Software Mentions: 2
Published: about 6 years ago

10.1186/s13567-015-0286-9

Transcriptional analysis of porcine intestinal mucosa infected with Salmonella Typhimurium revealed a massive inflammatory response and disruption of bile acid absorption in ileum
Cited by: 28
Author(s): Júber Herrera-Uribe, Melania Collado-Romero, Sara Zaldívar‐López, Cristina Arce, Rocí­o Bautista, Ana Carvajal, Susanna Cirera, M. Gonzalo Claros, Juan J. Garrido
Software Mentions: 2
Published: over 10 years ago

10.1186/s12918-019-0698-7

Anti-TNF- αtreatment-related pathways and biomarkers revealed by transcriptome analysis in Chinese psoriasis patients
Cited by: 6
Author(s): Lunfei Liu, Wenting Liu, Yuxin Zheng, Jisu Chen, Jiong Zhou, Huatuo Dai, Sheng Cai, Jianjun Li, Min Zheng, Yunqing Ren
Software Mentions: 2
Published: over 7 years ago

10.3390/v4101844

miRNA Profiles of Monocyte-Lineage Cells Are Consistent with Complicated Roles in HIV-1 Restriction
Cited by: 31
Author(s): Jeanne M. Sisk, Janice E. Clements, Kenneth W. Witwer
Software Mentions: 2
Published: almost 14 years ago

10.3390/v9100271

Antiviral Properties of Chemical Inhibitors of Cellular Anti-Apoptotic Bcl-2 Proteins
Cited by: 37
Author(s): Daria Bulanova, Aleksandr Ianevski, А. Н. Бугай, Yevhen Akimov, Suvi Kuivanen, Henrik Paavilainen, Laura Kakkola, Jatin Nandania, Laura Turunen, Tiina Öhman, Hanna Ala-Hongisto, Hanna M Pesonen, Marika Kuisma, Anni Honkimaa, Emma Louise Walton, Valentyn Oksenych, Martina B. Lorey, Dmitry Guschin, Jungmin Shim, Jinhee Kim, Thoa Thi Than, So Young Chang, Veijo Hukkanen, Evgeny Kulesskiy, Varpu Marjomäki, Ilkka Julkunen, Tuula A. Nyman, Sampsa Matikainen, Jani Saarela, Famara Sané, Didier Hober, Gülşah Gabriel, Jef K. De Brabander, Miika Martikainen, Marc P. Windisch, Ji-Young Min, Roberto Bruzzone, Tero Aittokallio, Markus Vähä‐Koskela, Olli Vapalahti, Arto Pulk, Vidya Velagapudi, Denis E. Kainov
Software Mentions: 2
Published: almost 9 years ago

10.1186/1752-0509-3-31

Small molecule activators of SIRT1 replicate signaling pathways triggered by calorie restriction in vivo
Cited by: 194
Author(s): J. Joshua Smith, Renée Deehan Kenney, David Gagné, Brian P. Frushour, William Ladd, Heidi L. Galonek, Kristine Israelian, Jun Tae Song, Giedre Razvadauskaite, Amy V. Lynch, David P. Carney, Robin J. Johnson, Siva Lavu, André Iffland, Peter J. Elliott, Philip Lambert, Keith O. Elliston, Michael R. Jirousek, Jill C. Milne, Olivier Boss
Software Mentions: 2
Published: over 17 years ago

10.1186/s13104-021-05521-y

HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) versus adult T-cell leukemia/lymphoma (ATLL)
Cited by: 4
Author(s): Mohadeseh Zarei-Ghobadi, Mohsen Sheikhi, Majid Teymoori‐Rad, Sahar Yaslianifard, Mehdi Norouzi, Somayeh Yaslianifard, Reza Faraji, Mohammad Farahmand, Shiva Bayat, Mohieddin Jafari, Sayed‐Hamidreza Mozhgani
Software Mentions: 2
Published: over 5 years ago

10.1186/1756-0500-4-555

A novel mean-centering method for normalizing microRNA expression from high-throughput RT-qPCR data
Cited by: 59
Author(s): Dennis Wylie, Jeffrey Shelton, Ashish Choudhary, Alex Adai
Software Mentions: 2
Published: almost 15 years ago

10.1186/s12957-017-1190-8

Special role of JUN in papillary thyroid carcinoma based on bioinformatics analysis
Cited by: 9
Author(s): Wenzheng Chen, Qingfeng Li, Yunxia Lv, Debin Xu, Wanzhi Chen, Jichun Yu
Software Mentions: 2
Published: about 9 years ago

10.1186/s12957-017-1211-7

Identification of key lncRNAs in colorectal cancer progression based on associated protein–protein interaction analysis
Cited by: 23
Author(s): Haishan Zhu, Jiajing Yu, Haifeng Zhu, Yusheng Guo, Sheng-Ya Feng
Software Mentions: 2
Published: about 9 years ago

10.1186/s12957-017-1242-0

Integrated network analysis to explore the key genes regulated by parathyroid hormone receptor 1 in osteosarcoma
Cited by: 10
Author(s): Dong-Hui Guan, Honglai Tian
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12957-018-1380-z

Digital gene expression profiling analysis and its application in the identification of genes associated with improved response to neoadjuvant chemotherapy in breast cancer
Cited by: 7
Author(s): Xiaozhen Liu, Gan Jin, Jin Qian, Hongjian Yang, Hongchao Tang, Xiao Meng, Yongfeng Li
Software Mentions: 2
Published: over 8 years ago

10.1186/s12957-019-1587-7

Identification of co-expression modules and pathways correlated with osteosarcoma and its metastasis
Cited by: 11
Author(s): Jiansheng Wang, Yunguo Wang, Yongsheng Zhong, Xuedong Li, Shasha Du, Peng Xie, Guizhou Zheng, Jingming Han
Software Mentions: 2
Published: over 7 years ago

10.1186/s12957-020-02026-z

Prognostic biomarkers related to breast cancer recurrence identified based on Logit model analysis
Cited by: 15
Author(s): Xiaoying Zhou, Chuanguang Xiao, Tong Han, Shusheng Qiu, Meng Wang, Jun Chen, Weike Sun, Liang Li, Lili Lin
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12957-020-02116-y

Identification of a prognostic gene signature of colon cancer using integrated bioinformatics analysis
Cited by: 16
Author(s): Zhengyu Fang, Sumei Xu, Yiwen Xie, Weirong Yan
Software Mentions: 2
Published: over 5 years ago

10.1186/s12957-021-02124-6

Identification of differentially methylated genes as diagnostic and prognostic biomarkers of breast cancer
Cited by: 18
Author(s): Xiaohong Mao, Qiang Ye, Guobing Zhang, Jialiang Jiang, Hongying Zhao, Yanfei Shao, Ziqi Ye, Zixue Xuan, Ping Huang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12957-021-02137-1

Identification and validation of a miRNA-related expression signature for tumor mutational burden in colorectal cancer
Cited by: 9
Author(s): Li Xu, Qing Zheng
Software Mentions: 2
Published: over 5 years ago

10.1186/s12957-021-02384-2

Determination of a six-gene prognostic model for cervical cancer based on WGCNA combined with LASSO and Cox-PH analysis
Cited by: 17
Author(s): Shiyan Li, Fengjuan Han, Na Qi, Liyang Wen, Jia Li, Feng Cong, Qingling Wang
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.18648

Maintenance of age in human neurons generated by microRNA-based neuronal conversion of fibroblasts
Cited by: 139
Author(s): Christine J. Huh, Bo Zhang, Matheus B. Victor, Sonika Dahiya, Luis Francisco Zirnberger Batista, Steve Horvath, Andrew S. Yoo
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13071-021-04996-9

Response to comments on our article (Yin YL et al., Parasit Vectors, 10.1186/s13071-021-04739-w) by Yuqing Wang and colleagues
Cited by: 1
Author(s): Yanling Yin, Xuefei Yang, Guanghui Zhao
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12989-014-0034-8

Oxidative stress and reduced responsiveness of challenged circulating leukocytes following pulmonary instillation of metal-rich particulate matter in rats
Cited by: 18
Author(s): Aaron Erdely, James M. Antonini, Shih‐Houng Young, Michael L. Kashon, Ja K. Gu, Tracy Hulderman, Rebecca Salmen, Terence Meighan, Jenny R. Roberts, Patti C. Zeidler-Erdely
Software Mentions: 2
Published: about 12 years ago

10.1186/s12989-014-0048-2

Inhalation of rod-like carbon nanotubes causes unconventional allergic airway inflammation
Cited by: 81
Author(s): Elina Rydman, Marit Ilves, Antti Joonas Koivisto, Pia Anneli Sofia Kinaret, Vittorio Fortino, Terhi Savinko, Maili Lehto, Ville Pulkkinen, Minnamari Vippola, Kaarle Hämeri, Sampsa Matikainen, Henrik Wolff, Kai Savolainen, Dario Greco, Harri Alenius
Software Mentions: 2
Published: almost 12 years ago

10.3389/fcell.2021.727762

Ferroptosis Driver SOCS1 and Suppressor FTH1 Independently Correlate With M1 and M2 Macrophage Infiltration in Head and Neck Squamous Cell Carcinoma
Cited by: 20
Author(s): Zhangwei Hu, Yihui Wen, Rong Ma, Lin Chen, Xue‐Lan Zeng, Wang Wen, Wei Sun
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2164-11-388

Expression of a retinoic acid signature in circulating CD34 cells from coronary artery disease patients
Cited by: 8
Author(s): Tineke C. T. M. van der Pouw Kraan, Stephan H. Schirmer, Joost O. Fledderus, Perry D. Moerland, Josefien M. Baggen, Thomas A. Leyen, A.M. van der Laan, Jan J. Piek, Niels van Royen, Anton J.G. Horrevoets
Software Mentions: 2
Published: over 16 years ago

10.1155/2014/836397

Upregulation of Relaxin after Experimental Subarachnoid Hemorrhage in Rabbits
Cited by: 6
Author(s): Yuichiro Kikkawa, Seiichiro Matsuo, Ryota Kurogi, Akira Nakamizo, Masahiro Mizoguchi, Tatsuya Sasaki
Software Mentions: 2
Published: over 12 years ago

10.1155/2019/3482751

Identification of Key Genes and Pathways Associated with Sex Differences in Osteoarthritis Based on Bioinformatics Analysis
Cited by: 6
Author(s): Shiying Wang, Huanmei Wang, Wei Liu, Biaofang Wei
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0017940

Acute Endotoxin-Induced Thymic Atrophy Is Characterized By Intrathymic Inflammatory and Wound Healing Responses
Cited by: 61
Author(s): Matthew J. Billard, Amanda Louise Gruver, Gregory D. Sempowski
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0083359

Peg3 Mutational Effects on Reproduction and Placenta-Specific Gene Families
Cited by: 64
Author(s): Joomyeong Kim, Wesley D. Frey, Hui He, Hana Kim, Muhammad B. Ekram, Arundhati Bakshi, Mohammad Faisal, Bambarendage P. U. Perera, An Ye, Ryoichi Teruyama
Software Mentions: 2
Published: over 12 years ago

10.1016/j.csbj.2018.06.002

In Silico Prediction of Large-Scale Microbial Production Performance: Constraints for Getting Proper Data-Driven Models
Cited by: 13
Author(s): Julia Zieringer, Ralf Takors
Software Mentions: 2
Published: over 8 years ago

10.1186/s13054-019-2401-1

PO2 oscillations induce lung injury and inflammation
Cited by: 6
Author(s): Stefan Boehme, Erik K. Hartmann, Thomas Tripp, Serge C. Thal, Matthias David, Dietmar Abraham, James E. Baumgardner, Klaus Markstaller, Klaus Ulrich Klein
Software Mentions: 2
Published: over 7 years ago

10.15698/mic2016.06.505

Construction and evaluation of yeast expression networks by database-guided predictions
Cited by: 7
Author(s): Katharina Papsdorf, Siyuan Sima, Gerhard Richter, Klaus Richter
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0233319

Brain regional gene expression network analysis identifies unique interactions between chronic ethanol exposure and consumption
Cited by: 7
Author(s): Maren L. Smith, Marcelo F. López, Aaron R. Wolen, Howard C. Becker, Michael F. Miles
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/3268505

The Role of Overexpressed Apolipoprotein AV in Insulin-Resistant Hepatocytes
Cited by: 0
Author(s): Wang Zhao, Yaqiong Liu, Xiao‐Bo Liao, Shui‐Ping Zhao
Software Mentions: 2
Published: over 6 years ago

10.1186/1476-4598-6-13

Integrative analysis of a cancer somatic mutome
Cited by: 23
Author(s): Pilar Hernández, Xavier Solé, Joan Valls, Vı́ctor Moreno, Gabriel Capellá, Ander Urruticoechea, Miguel Ángel Pujana
Software Mentions: 2
Published: over 19 years ago

10.1016/j.dib.2020.106064

Tandem mass tagged dataset used to characterize muscle-specific proteome changes in beef during early postmortem period
Cited by: 2
Author(s): Chaoyu Zhai, B. A. Djimsa, Kitty Brown, Jessica E. Prenni, D. R. Woerner, K. E. Belk, Mahesh N. Nair
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0035012

Comparative Transcriptional Network Modeling of Three PPAR-α/γ Co-Agonists Reveals Distinct Metabolic Gene Signatures in Primary Human Hepatocytes
Cited by: 15
Author(s): Renée Deehan, Pia Maerz-Weiss, Natalie L. Catlett, Guido Steiner, Ben Wong, Matthew B. Wright, Gil Blander, Keith O. Elliston, William Ladd, María Bobadilla, Jacques Mizrahi, Carolina Haefliger, Alan D. Edgar
Software Mentions: 2
Published: over 14 years ago

10.1186/s12864-015-2160-6

Genome-wide miR-155 and miR-802 target gene identification in the hippocampus of Ts65Dn Down syndrome mouse model by miRNA sponges
Cited by: 30
Author(s): Xavier Bofill-De Ros, Mónica Santos, María Vila-Casadesús, Eneko Villanueva, Núria Andreu, Mara Dierssen, Cristina Fillat
Software Mentions: 2
Published: almost 11 years ago

10.1155/2020/9809347

The Expression and Potential Role of Tubulin Alpha 1b in Wilms’ Tumor
Cited by: 7
Author(s): Qiong-Qian Xu, Li-Ting Qin, Song-Wu Liang, Peng Chen, Jin-Han Gu, Zhi‐Guang Huang, Xia Yang, Gao Li, Shi‐Shuo Wang, Yige Luo, Lin-Le-Yi Liu, Jun Wang, Junyu Lin, Jiabo Chen
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0081702

Mycophenolic Acid Inhibits Migration and Invasion of Gastric Cancer Cells via Multiple Molecular Pathways
Cited by: 36
Author(s): Boying Dun, Ashok Sharma, Yong Teng, Haitao Liu, Sharad Purohit, Heng Xu, Lingwen Zeng, Jin Xiong She
Software Mentions: 2
Published: almost 13 years ago

10.1016/j.dib.2015.08.024

Gene regulation by long purine tracks in brain related diseases
Cited by: 3
Author(s): Himanshu Narayan Singh, Moganty R. Rajeswari
Software Mentions: 2
Published: almost 11 years ago

10.1155/2020/6353814

Identification of a Transcription Factor-microRNA-Gene Coregulation Network in Meningioma through a Bioinformatic Analysis
Cited by: 2
Author(s): Juan Wang, Yan Liang, Hui Yang, Jianhuang Wu
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0145252

Confounding Factors in the Transcriptome Analysis of an In-Vivo Exposure Experiment
Cited by: 12
Author(s): Oskar Bruning, Wendy Rodenburg, Paul Wackers, Conny van Oostrom, Martijs J. Jonker, R.J. Dekker, Han Rauwerda, Wim A. Ensink, Annemieke de Vries, Timo M. Breit
Software Mentions: 2
Published: over 10 years ago

10.3389/fcell.2020.576604

Fgf10 Signaling-Based Evidence for the Existence of an Embryonic Stage Distinct From the Pseudoglandular Stage During Mouse Lung Development
Cited by: 7
Author(s): Sara Taghizadeh, Matthew R. Jones, Ruth Olmer, Saskia Ulrich, Soula Danopoulos, Chengguo Shen, Chaolei Chen, Jochen Wilhelm, Ulrich Martin, Chengshui Chen, Denise Al Alam, Savério Bellusci
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.dib.2020.106570

RNA sequencing data from osteochondroprogenitor populations in synovial joints of mice during murine model of rheumatoid arthritis
Cited by: 2
Author(s): Nina Batorek-Lukač, Vedran Katavić, Alan Šućur, Maša Filipović, Danka Grčević, Nataša Kovačić
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.dib.2016.10.026

Data on quantification of signaling pathways activated by KIT and PDGFRA mutants
Cited by: 2
Author(s): Christelle Bahlawane, Martine Schmitz, Elisabeth Letellier, Karthik Arumugam, Nathalie Nicot, Petr V. Nazarov, Serge Haan
Software Mentions: 2
Published: almost 10 years ago

10.1155/2021/6663367

Upregulation of CDC7 Associated with Cervical Cancer Incidence and Development
Cited by: 2
Author(s): Qingwei Wang, Wenjie Zheng
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-018-4517-0

Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature
Cited by: 37
Author(s): Waldo G. Nuez-Ortín, Chris Carter, Peter D. Nichols, Ira Cooke, Richard Wilson
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0061654

Genetic, Functional and Molecular Features of Glucocorticoid Receptor Binding
Cited by: 22
Author(s): Francesca Luca, Joseph C. Maranville, Allison L. Richards, David B. Witonsky, Matthew Stephens, Anna Di Rienzo
Software Mentions: 2
Published: over 13 years ago

10.1016/j.mcpro.2021.100135

A Universal Peptide Matrix Interactomics Approach to Disclose Motif-Dependent Protein Binding
Cited by: 14
Author(s): Evelyn Ramberger, Lorena Suarez-Artiles, Daniel Hernández, Mohamed Haji, Oliver Popp, Ulf Reimer, Achim Leutz, Gunnar Dittmar, Philipp Mertins
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/2053902

Prognostic Value of an m6A RNA Methylation Regulator-Based Signature in Patients with Hepatocellular Carcinoma
Cited by: 22
Author(s): Xiaomin Wu, Xiaojing Zhang, Leilei Tao, Xichao Dai, Ping Chen
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0040521

Molecular Resistance Fingerprint of Pemetrexed and Platinum in a Long-Term Survivor of Mesothelioma
Cited by: 33
Author(s): Oluf Dimitri Røe, Adam Szulkin, Endre Anderssen, Arnar Flatberg, Helmut Sandeck, Tore Amundsen, Sten Even Erlandsen, Katalin Dobra, Stein Sundstrøm
Software Mentions: 2
Published: about 14 years ago

10.1016/j.devcel.2018.08.011

Stem Cell Intrinsic Hexosamine Metabolism Regulates Intestinal Adaptation to Nutrient Content
Cited by: 32
Author(s): Jaakko Mattila, Krista Kokki, Ville Hietakangas, Michael Boutros
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0009114

Functional Overlap between eIF4G Isoforms in Saccharomyces cerevisiae
Cited by: 51
Author(s): Bryan K. Clarkson, Wendy V. Gilbert, Jennifer A. Doudna
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0137995

Enriched Bone Marrow Derived Disseminated Neuroblastoma Cells Can Be a Reliable Source for Gene Expression Studies—A Validation Study
Cited by: 5
Author(s): Fikret Rifatbegovic, Mojtaba Abbasi, Sabine Taschner‐Mandl, Maximilian Kauer, Andreas Weinhäusel, Rupert Handgretinger, Peter F. Ambros
Software Mentions: 2
Published: about 11 years ago

10.1016/j.devcel.2019.05.032

Id1 Stabilizes Epiblast Identity by Sensing Delays in Nodal Activation and Adjusting the Timing of Differentiation
Cited by: 11
Author(s): Mattias Malaguti, Rosa Portero Migueles, Guillaume Blin, Chia–Yi Lin, Sally Lowell
Software Mentions: 2
Published: about 7 years ago

10.1186/1471-2164-15-327

Transcriptome profiling of liver of non-genetic low birth weight and long term health consequences
Cited by: 4
Author(s): Alberto Miranda, Angela Patricia López‐Cardona, Ricardo Laguna‐Barraza, Alexandra Calle, Irene López‐Vidriero, Belén Pintado, Alfonso Gutiérrez‐Adán
Software Mentions: 2
Published: over 12 years ago

10.1155/2021/6898093

Genomic Expression Profiling and Bioinformatics Analysis of Chronic Recurrent Multifocal Osteomyelitis
Cited by: 3
Author(s): Kai Huang, Bingyuan Lin, Yiyang Liu, Qiaofeng Guo, Haiyong Ren
Software Mentions: 2
Published: over 5 years ago

10.1242/dev.163808

Regulation and function of H3K36 di-methylation by the trithorax-group protein complex AMC
Cited by: 34
Author(s): Sigrun Schmähling, Arno Meiler, Yoonjung Lee, Arif Mohammed, Katja Finkl, Katharina Tauscher, Lars Israel, Marc Wirth, Julia Philippou‐Massier, Helmut Blum, Bianca Habermann, Axel Imhof, Ji-Joon Song, Jürg Müller
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0113784

Hypermethylation of Cox5a Promoter Is Associated with Mitochondrial Dysfunction in Skeletal Muscle of High Fat Diet-Induced Insulin Resistant Rats
Cited by: 14
Author(s): Yingying Gong, Yuan-yuan Liu, Jin Li, Lei Su, Shuang Yu, Xiao‐Feng Zhu, Xiaopei Cao, Hang Xiao
Software Mentions: 2
Published: almost 12 years ago

10.1155/2020/6954793

Identification and Verification of Biomarker in Clear Cell Renal Cell Carcinoma via Bioinformatics and Neural Network Model
Cited by: 6
Author(s): Bin Liu, Yu Xiao, Hao Li, Aili Zhang, Ling‐Bing Meng, Feng Lü, Zhihong Zhao, Xiaochen Ni, Bo Fan, Xiaoyu Zhang, Shi-Bin Zhao, Yibo Liu
Software Mentions: 2
Published: over 6 years ago

10.3389/fcimb.2012.00158

Crp Induces Switching of the CsrB and CsrC RNAs in Yersinia pseudotuberculosis and Links Nutritional Status to Virulence
Cited by: 55
Author(s): Ann Kathrin Heroven, Maike Sest, Fabrizio Pisano, Matthias Scheb-Wetzel, Rebekka Steinmann, Katja Böhme, Johannes Klein, Richard Münch, Dietmar Schomburg, Petra Dersch
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0024973

A Comparison of Methods for Classifying Clinical Samples Based on Proteomics Data: A Case Study for Statistical and Machine Learning Approaches
Cited by: 29
Author(s): Dayle Sampson, Tony J. Parker, Zee Upton, Cameron Hurst
Software Mentions: 2
Published: almost 15 years ago

10.1186/s13041-019-0436-5

Gene expression meta-analysis of Parkinson’s disease and its relationship with Alzheimer’s disease
Cited by: 43
Author(s): Jack Kelly, Rana Moyeed, Camille Carroll, Diego Albani, Xinzhong Li
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0005242

Short-Term Calorie Restriction in Male Mice Feminizes Gene Expression and Alters Key Regulators of Conserved Aging Regulatory Pathways
Cited by: 82
Author(s): Preston W. Estep, Jason Warner, Martha L. Bulyk
Software Mentions: 2
Published: over 17 years ago

10.1155/2020/8082697

Identification and Verification of Core Genes in Colorectal Cancer
Cited by: 22
Author(s): Houxi Xu, Yuzhu Ma, Jinzhi Zhang, Jialin Gu, Xianwen Jing, Lu Shen, Shunjun Fu, Jiege Huo
Software Mentions: 2
Published: over 6 years ago