10.18632/aging.102634

CeRNA regulatory network-based analysis to study the roles of noncoding RNAs in the pathogenesis of intrahepatic cholangiocellular carcinoma
Cited by: 24
Author(s): Weiyu Xu, Si Yu, Jianping Xiong, Junyu Long, Yongchang Zheng, Xinting Sang
Software Mentions: 2
Published: over 6 years ago

10.3390/biom9050201

Identification of Crucial Candidate Genes and Pathways in Glioblastoma Multiform by Bioinformatics Analysis
Cited by: 30
Author(s): Ali Mohamed Alshabi, Basavaraj Vastrad, Ibrahim Ahmed Shaikh, Chanabasayya Vastrad
Software Mentions: 2
Published: over 7 years ago

10.1186/1755-8794-3-44

Molecular signature of response and potential pathways related to resistance to the HSP90 inhibitor, 17AAG, in breast cancer
Cited by: 26
Author(s): Magdalena Zając, Gonzalo Vázquez Gómez, Javier Benı́tez, Beatriz Martı́nez-Delgado
Software Mentions: 2
Published: almost 16 years ago

10.3390/v4101844

miRNA Profiles of Monocyte-Lineage Cells Are Consistent with Complicated Roles in HIV-1 Restriction
Cited by: 31
Author(s): Jeanne M. Sisk, Janice E. Clements, Kenneth W. Witwer
Software Mentions: 2
Published: almost 14 years ago

10.3390/v9100271

Antiviral Properties of Chemical Inhibitors of Cellular Anti-Apoptotic Bcl-2 Proteins
Cited by: 37
Author(s): Daria Bulanova, Aleksandr Ianevski, А. Н. Бугай, Yevhen Akimov, Suvi Kuivanen, Henrik Paavilainen, Laura Kakkola, Jatin Nandania, Laura Turunen, Tiina Öhman, Hanna Ala-Hongisto, Hanna M Pesonen, Marika Kuisma, Anni Honkimaa, Emma Louise Walton, Valentyn Oksenych, Martina B. Lorey, Dmitry Guschin, Jungmin Shim, Jinhee Kim, Thoa Thi Than, So Young Chang, Veijo Hukkanen, Evgeny Kulesskiy, Varpu Marjomäki, Ilkka Julkunen, Tuula A. Nyman, Sampsa Matikainen, Jani Saarela, Famara Sané, Didier Hober, Gülşah Gabriel, Jef K. De Brabander, Miika Martikainen, Marc P. Windisch, Ji-Young Min, Roberto Bruzzone, Tero Aittokallio, Markus Vähä‐Koskela, Olli Vapalahti, Arto Pulk, Vidya Velagapudi, Denis E. Kainov
Software Mentions: 2
Published: almost 9 years ago

10.1186/1755-8794-4-29

Sex hormones and gene expression signatures in peripheral blood from postmenopausal women - the NOWAC postgenome study
Cited by: 10
Author(s): Marit Waaseth, Karina Standahl Olsen, Charlotta Rylander, Eiliv Lund, Vanessa Dumeaux
Software Mentions: 2
Published: over 15 years ago

10.15252/msb.20178131

Quantifying compartment‐associated variations of protein abundance in proteomics data
Cited by: 10
Author(s): Luca Parca, Martin Beck, Peer Bork, Alessandro Ori
Software Mentions: 2
Published: about 8 years ago

10.1186/s12920-020-00745-6

Genome-wide identification of methylated CpG sites in nongenital cutaneous warts
Cited by: 3
Author(s): Laith N. AL-Eitan, Mansour A. Alghamdi, Amneh H. Tarkhan, Firas Al‐Qarqaz
Software Mentions: 2
Published: about 6 years ago

10.3389/fmolb.2021.598427

An Extracellular Matrix-Based Signature Associated With Immune Microenvironment Predicts the Prognosis and Therapeutic Responses of Patients With Oesophageal Squamous Cell Carcinoma
Cited by: 8
Author(s): Hongpan Zhang, Qi Shi, Zhihao Yang, Kaige Wang, Zhe Zhang, Zheng Huang, Xiaobin Cui, Feng Li
Software Mentions: 2
Published: over 5 years ago

10.15252/msb.20145120

Pathway connectivity and signaling coordination in the yeast stress‐activated signaling network
Cited by: 82
Author(s): Deborah Chasman, Yi-Hsuan Ho, David B. Berry, Corey M. Nemec, Matthew E. MacGilvray, James Hose, Anna E. Merrill, M Violet Lee, Jessica L. Will, Joshua J. Coon, Aseem Z. Ansari, Mark Craven, Audrey P. Gasch
Software Mentions: 2
Published: almost 12 years ago

10.1007/s10549-017-4652-3

Functional transcriptomic annotation and protein–protein interaction network analysis identify NEK2, BIRC5, and TOP2A as potential targets in obese patients with luminal A breast cancer
Cited by: 31
Author(s): Miriam Nuncia-Cantarero, Sandra Martínez-Canales, Fernando Andrés-Pretel, Gabriel Santpere, Alberto Ocaña, Eva M Moya
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0184900

Methylation associated transcriptional repression of ELOVL5 in novel colorectal cancer cell lines
Cited by: 10
Author(s): Arnoud Boot, Jan Oosting, Jaap D. H. van Eendenburg, Peter J.K. Kuppen, Hans Morreau, Tom van Wezel
Software Mentions: 2
Published: almost 9 years ago

10.3390/cells8060583

Mitochondrial Transcriptome Control and Intercompartment Cross-Talk During Plant Development
Cited by: 6
Author(s): Adnan Khan Niazi, Étienne Delannoy, Rana Khalid Iqbal, Daria Mileshina, Romain Val, Marta Gabryelska, Eliza Wyszko, Ludivine Soubigou‐Taconnat, Maciej Szymański, Jan Barciszewski, Frédérique Weber-Lotfi, José M. Gualberto, André Dietrich
Software Mentions: 2
Published: over 7 years ago

10.1038/s41380-019-0449-6

Genome-wide methylation in alcohol use disorder subjects: implications for an epigenetic regulation of the cortico-limbic glucocorticoid receptors (NR3C1)
Cited by: 49
Author(s): Eleonora Gatta, Dennis R. Grayson, James Auta, Vikram Saudagar, Erbao Dong, Ying Chen, Harish R. Krishnan, Jenny Drnevich, Subhash C. Pandey, Alessandro Guidotti
Software Mentions: 2
Published: about 7 years ago

10.1038/s41380-018-0255-6

Integrative approach to sporadic Alzheimer’s disease: deficiency of TYROBP in cerebral Aβ amyloidosis mouse normalizes clinical phenotype and complement subnetwork molecular pathology without reducing Aβ burden
Cited by: 52
Author(s): Jean‐Vianney Haure‐Mirande, Minghui Wang, Mickaël Audrain, Tomas Fanutza, Soong Ho Kim, Szilvia Heja, Ben Readhead, Joel T. Dudley, Robert D. Blitzer, Eric E. Schadt, Bin Zhang, Sam Gandy, Michelle E. Ehrlich
Software Mentions: 2
Published: almost 8 years ago

10.1186/1755-8794-4-30

Identification of SERPINA1 as single marker for papillary thyroid carcinoma through microarray meta analysis and quantification of its discriminatory power in independent validation
Cited by: 41
Author(s): Klemens Vierlinger, Markus Mansfeld, Oskar Koperek, Christa Nöhammer, Klaus Kaserer, Friedrich Leisch
Software Mentions: 2
Published: over 15 years ago

10.3390/cells9051237

Exogenous Liposomal Ceramide-C6 Ameliorates Lipidomic Profile, Energy Homeostasis, and Anti-Oxidant Systems in NASH
Cited by: 12
Author(s): F. Zanieri, Ana Levi, David Montefusco, Lisa Longato, Francesco De Chiara, Luca Frenguelli, Sara Omenetti, Fausto Andreola, TuVinh Luong, Veronica Massey, Juan Caballería, Constantino Fondevila, Sriram S. Shanmugavelandy, Todd E. Fox, Giuseppe Mazza, Josepmaria Argemí, Ramón Bataller, L. Ashley Cowart, Mark Kester, Massimo Pinzani, Krista Rombouts
Software Mentions: 2
Published: over 6 years ago

10.1186/s13058-015-0615-y

Multipotent luminal mammary cancer stem cells model tumor heterogeneity
Cited by: 40
Author(s): Lei Bao, Robert D. Cardiff, Paul Steinbach, Karen Messer, Lesley G. Ellies
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12957-017-1190-8

Special role of JUN in papillary thyroid carcinoma based on bioinformatics analysis
Cited by: 9
Author(s): Wenzheng Chen, Qingfeng Li, Yunxia Lv, Debin Xu, Wanzhi Chen, Jichun Yu
Software Mentions: 2
Published: about 9 years ago

10.1186/s12957-017-1211-7

Identification of key lncRNAs in colorectal cancer progression based on associated protein–protein interaction analysis
Cited by: 23
Author(s): Haishan Zhu, Jiajing Yu, Haifeng Zhu, Yusheng Guo, Sheng-Ya Feng
Software Mentions: 2
Published: about 9 years ago

10.1186/s12957-017-1242-0

Integrated network analysis to explore the key genes regulated by parathyroid hormone receptor 1 in osteosarcoma
Cited by: 10
Author(s): Dong-Hui Guan, Honglai Tian
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12957-018-1380-z

Digital gene expression profiling analysis and its application in the identification of genes associated with improved response to neoadjuvant chemotherapy in breast cancer
Cited by: 7
Author(s): Xiaozhen Liu, Gan Jin, Jin Qian, Hongjian Yang, Hongchao Tang, Xiao Meng, Yongfeng Li
Software Mentions: 2
Published: over 8 years ago

10.1186/1755-8794-1-34

Influence of monolayer, spheroid, and tumor growth conditions on chromosome 3 gene expression in tumorigenic epithelial ovarian cancer cell lines
Cited by: 22
Author(s): Neal Cody, Magdalena Zietarska, Ali Filali‐Mouhim, Diane Provencher, Anne-Marie Mes-Masson, Patricia N. Tonin
Software Mentions: 2
Published: about 18 years ago

10.1186/s12957-019-1587-7

Identification of co-expression modules and pathways correlated with osteosarcoma and its metastasis
Cited by: 11
Author(s): Jiansheng Wang, Yunguo Wang, Yongsheng Zhong, Xuedong Li, Shasha Du, Peng Xie, Guizhou Zheng, Jingming Han
Software Mentions: 2
Published: over 7 years ago

10.3390/cells8121556

Influence of Liver Fibrosis on Lobular Zonation
Cited by: 39
Author(s): Ahmed Ghallab, Maiju Myllys, Christian H. Holland, Ayham Zaza, Walaa Murad, Reham Hassan, Yasser A. Ahmed, Tahany Abbas, Eman A. Abdelrahim, Kai Markus Schneider, Madlen Matz‐Soja, Jörg Reinders, Rolf Gebhardt, Marie‐Luise Berres, Maximilian Hatting, Dirk Drasdo, Julio Sáez-Rodríguez, Christian Trautwein, Jan G. Hengstler
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12957-020-02026-z

Prognostic biomarkers related to breast cancer recurrence identified based on Logit model analysis
Cited by: 15
Author(s): Xiaoying Zhou, Chuanguang Xiao, Tong Han, Shusheng Qiu, Meng Wang, Jun Chen, Weike Sun, Liang Li, Lili Lin
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12957-020-02116-y

Identification of a prognostic gene signature of colon cancer using integrated bioinformatics analysis
Cited by: 16
Author(s): Zhengyu Fang, Sumei Xu, Yiwen Xie, Weirong Yan
Software Mentions: 2
Published: over 5 years ago

10.1186/s12957-021-02124-6

Identification of differentially methylated genes as diagnostic and prognostic biomarkers of breast cancer
Cited by: 18
Author(s): Xiaohong Mao, Qiang Ye, Guobing Zhang, Jialiang Jiang, Hongying Zhao, Yanfei Shao, Ziqi Ye, Zixue Xuan, Ping Huang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12957-021-02137-1

Identification and validation of a miRNA-related expression signature for tumor mutational burden in colorectal cancer
Cited by: 9
Author(s): Li Xu, Qing Zheng
Software Mentions: 2
Published: over 5 years ago

10.1111/mpp.12048

Transcriptomic characterization of two major <i><scp>F</scp>usarium</i> resistance quantitative trait loci (<scp>QTL</scp>s), <i><scp>F</scp>hb1</i> and <i><scp>Q</scp>fhs.ifa‐<scp>5A</scp></i>, identifies novel candidate genes
Cited by: 101
Author(s): Wolfgang Schweiger, Barbara Steiner, Christian Ametz, Gerald Siegwart, Gerlinde Wiesenberger, Franz Berthiller, Marc Lemmens, Haiyan Jia, Gerhard Adam, Gary J. Muehlbauer, David P. Kreil, Hermann Buerstmayr
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0148351

Transcriptional Analysis of T Cells Resident in Human Skin
Cited by: 27
Author(s): Jane Li, Moshe Olshansky, Francis R. Carbone, Z. Joel
Software Mentions: 2
Published: over 10 years ago

10.3389/fmolb.2021.645470

Aberrant DNA Methylation-Mediated FOXF2 Dysregulation Is a Prognostic Risk Factor for Gastric Cancer
Cited by: 4
Author(s): Cheng Zhang, Yongzhi Li, Dong‐Qiu Dai
Software Mentions: 2
Published: about 5 years ago

10.1186/s12920-021-01085-9

Identification of seven novel ferroptosis-related long non-coding RNA signatures as a diagnostic biomarker for acute myeloid leukemia
Cited by: 15
Author(s): Zhiyuan Zheng, Wei Wu, Zehang Lin, Shuhan Liu, Qiaoqian Chen, Xiandong Jiang, Yu Xue, Lin Dong
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12920-021-00894-2

Integrated analysis of differentially expressed genes and construction of a competing endogenous RNA network in human Huntington neural progenitor cells
Cited by: 3
Author(s): Xiaoping Tan, Yang Liu, Taiming Zhang, Shuyan Cong
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2021.595712

Quantitative Proteomic Analysis in Alveolar Type II Cells Reveals the Different Capacities of RAS and TGF-β to Induce Epithelial–Mesenchymal Transition
Cited by: 3
Author(s): Yilu Zhou, Catherine M. Hill, Liudi Yao, Juanjuan Li, David C. Hancock, Julian Downward, Mark G. Jones, Donna E. Davies, Rob M. Ewing, Paul Skipp, Yihua Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/1755-8794-2-54

MicroRNA-125a is over-expressed in insulin target tissues in a spontaneous rat model of Type 2 Diabetes
Cited by: 111
Author(s): Blanca Herrera, Helen Lockstone, Jennifer Taylor, Quin F. Wills, Pamela J. Kaisaki, Amy Barrett, Carme Camps, Christina Fernández, Jiannis Ragoussis, Dominique Guyader, Mark I. McCarthy, Cecilia M. Lindgren
Software Mentions: 2
Published: about 17 years ago

10.1038/s41398-021-01323-9

Transcriptomic signaling pathways involved in a naturalistic model of inflammation-related depression and its remission
Cited by: 8
Author(s): Marie‐Pierre Moisan, Aline Foury, Sandra Dexpert, Steve W. Cole, Cédric Beau, Damien Forestier, Patrick Ledaguenel, Eric Magne, Lucile Capuron
Software Mentions: 2
Published: over 5 years ago

10.1177/1744806920966902

Enrichment of genomic pathways based on differential DNA methylation profiles associated with chronic musculoskeletal pain in older adults: An exploratory study
Cited by: 6
Author(s): Soamy Montesino-Goicolea, P. P. Sinha, Zhiguang Huo, Asha Rani, Thomas C. Foster
Software Mentions: 2
Published: over 6 years ago

10.1186/s12957-021-02384-2

Determination of a six-gene prognostic model for cervical cancer based on WGCNA combined with LASSO and Cox-PH analysis
Cited by: 17
Author(s): Shiyan Li, Fengjuan Han, Na Qi, Liyang Wen, Jia Li, Feng Cong, Qingling Wang
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0205340

The small molecule rhodomyrtone suppresses TNF-α and IL-17A-induced keratinocyte inflammatory responses: A potential new therapeutic for psoriasis
Cited by: 17
Author(s): Julalak Chorachoo, Sylviane Lambert, Teal Furnholm, Liza Roberts, Laura J. Reingold, Sauvarat Auepemkiate, Supayang Piyawan Voravuthikunchai, Andrew Johnston
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0020414

Blood Signature of Pre-Heart Failure: A Microarrays Study
Cited by: 21
Author(s): Fatima Smih, Franck Desmoulin, Matthieu Berry, Annie Turkieh, Romain Harmancey, Jason S. Iacovoni, Charlotte Trouillet, Clément Delmas, Atul Pathak, Olivier Lairez, François Koukoui, P Massabuau, Jean Ferrières, Michel Galinier, Philippe Rouet
Software Mentions: 2
Published: about 15 years ago

10.1038/s41398-021-01373-z

Cell-type-specific expression quantitative trait loci associated with Alzheimer disease in blood and brain tissue
Cited by: 27
Author(s): Devanshi Patel, Xiaoling Zhang, John Farrell, Jaeyoon Chung, Thor D. Stein, Kathryn L. Lunetta, Lindsay A. Farrer
Software Mentions: 2
Published: over 5 years ago

10.1002/1878-0261.12196

Serum amyloid A1 in combination with integrin αVβ3 increases glioblastoma cells mobility and progression
Cited by: 24
Author(s): Ching Yu Lin, Shun Tai Yang, Shing Chuan Shen, Yi Chen Hsieh, Fei Ting Hsu, Cheng-Yu Chen, Yung Hsiao Chiang, Jian Ying Chuang, Kai Yun Chen, Todd Hsu, Wan Chong Leong, Yu Su, Wen-Liang Lo, Yung‐Sung Yeh, Yudha Nur Patria, Hsiu Ming Shih, Che-Chang Chang, Szu Yi Chou
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0166147

SLC7A5 Functions as a Downstream Target Modulated by CRKL in Metastasis Process of Gastric Cancer SGC-7901 Cells
Cited by: 13
Author(s): Junqing Wang, Xiaochun Fei, Wenjun Wu, Xuehua Chen, Liping Su, Zhenggang Zhu, Yunyun Zhou
Software Mentions: 2
Published: almost 10 years ago

10.3390/cells9102272

Small-Molecule Chemical Knockdown of MuRF1 in Melanoma Bearing Mice Attenuates Tumor Cachexia Associated Myopathy
Cited by: 13
Author(s): Volker Adams, Victoria Gußen, Sergey Zozulya, André Cruz, Anselmo Sigari Moriscot, Axel Linke, Siegfried Labeit
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0227295

Targeted transcriptomic study of the implication of central metabolic pathways in mannosylerythritol lipids biosynthesis in Pseudozyma antarctica T-34
Cited by: 6
Author(s): Keisuke Wada, Hideaki Koike, Tatsuya Fujii, Tomotake Morita
Software Mentions: 2
Published: over 6 years ago

10.1186/s13071-021-04996-9

Response to comments on our article (Yin YL et al., Parasit Vectors, 10.1186/s13071-021-04739-w) by Yuqing Wang and colleagues
Cited by: 1
Author(s): Yanling Yin, Xuefei Yang, Guanghui Zhao
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12920-020-0672-7

Pathway mapping of leukocyte transcriptome in influenza patients reveals distinct pathogenic mechanisms associated with progression to severe infection
Cited by: 12
Author(s): Yoann Zerbib, Emily Jenkins, Maryam Shojaei, Adrienne F. A. Meyers, John Ho, T. Blake Ball, Yoav Keynan, Amarnath Pisipati, Aseem Kumar, Anand Kumar, Marek Nalos, Benjamin Tang, Klaus Schughart, Anthony S. McLean
Software Mentions: 2
Published: over 6 years ago

10.1186/s12920-020-00741-w

Construction and analysis of a lncRNA-miRNA-mRNA network based on competitive endogenous RNA reveal functional lncRNAs in oral cancer
Cited by: 22
Author(s): Jian Yin, Xiaoli Zeng, Zexin Ai, Miao Yu, Yang’ou Wu, Shengjiao Li
Software Mentions: 2
Published: about 6 years ago

10.1186/s12920-020-00856-0

A predictive model for assessing prognostic risks in gastric cancer patients using gene expression and methylation data
Cited by: 1
Author(s): Dan Luo, Qingling Yang, Haibo Wang, Mao Tan, Yanlei Zou, Jian Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12989-014-0034-8

Oxidative stress and reduced responsiveness of challenged circulating leukocytes following pulmonary instillation of metal-rich particulate matter in rats
Cited by: 18
Author(s): Aaron Erdely, James M. Antonini, Shih‐Houng Young, Michael L. Kashon, Ja K. Gu, Tracy Hulderman, Rebecca Salmen, Terence Meighan, Jenny R. Roberts, Patti C. Zeidler-Erdely
Software Mentions: 2
Published: about 12 years ago

10.1186/s12989-014-0048-2

Inhalation of rod-like carbon nanotubes causes unconventional allergic airway inflammation
Cited by: 81
Author(s): Elina Rydman, Marit Ilves, Antti Joonas Koivisto, Pia Anneli Sofia Kinaret, Vittorio Fortino, Terhi Savinko, Maili Lehto, Ville Pulkkinen, Minnamari Vippola, Kaarle Hämeri, Sampsa Matikainen, Henrik Wolff, Kai Savolainen, Dario Greco, Harri Alenius
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41398-021-01528-y

Conserved immunomodulatory transcriptional networks underlie antipsychotic-induced weight gain
Cited by: 5
Author(s): Rizaldy C. Zapata, Besma Chaudry, Mariela Lopez Valencia, Dinghong Zhang, Scott A. Ochsner, Neil J. McKenna, Olivia Osborn
Software Mentions: 2
Published: about 5 years ago

10.1155/2016/3605302

A Cross-Study Biomarker Signature of Human Bronchial Epithelial Cells Infected with Respiratory Syncytial Virus
Cited by: 7
Author(s): Luiz Gustavo Gardinassi
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0053780

Parallel Analysis of mRNA and microRNA Microarray Profiles to Explore Functional Regulatory Patterns in Polycystic Kidney Disease: Using PKD/Mhm Rat Model
Cited by: 55
Author(s): Harsh Dweep, Carsten Sticht, Asawari Kharkar, Priyanka Pandey, Norbert Gretz
Software Mentions: 2
Published: over 13 years ago

10.1186/s13058-015-0585-0

Integration of microRNA signatures of distinct mammary epithelial cell types with their gene expression and epigenetic portraits
Cited by: 29
Author(s): Bhupinder Pal, Yunshun Chen, Andrew G. Bert, Yifang Hu, Julie Sheridan, Tamara Beck, Wei Shi, Keith Satterley, Paul Jamieson, Gregory J. Goodall, Geoffrey J. Lindeman, Gordon K. Smyth, Jane E. Visvader
Software Mentions: 2
Published: over 11 years ago

10.1186/s12920-018-0443-x

Meta-analysis of gene expression profiles in long-term non-progressors infected with HIV-1
Cited by: 11
Author(s): Sun Young Lee, Yong Kwang Park, Choon Sik Yoon, Kisoon Kim, Kyung-Chang Kim
Software Mentions: 2
Published: over 7 years ago

10.1186/bcr3444

BreastMark: An Integrated Approach to Mining Publicly Available Transcriptomic Datasets Relating to Breast Cancer Outcome
Cited by: 121
Author(s): Stephen F. Madden, Colin Clarke, Patricia Gaule, Sinéad Aherne, Norma O’Donovan, Martin Clynes, John Crown, William M. Gallagher
Software Mentions: 2
Published: about 13 years ago

10.3390/cells9010099

Csf1 Deficiency Dysregulates Glial Responses to Demyelination and Disturbs CNS White Matter Remyelination
Cited by: 16
Author(s): Bartosz Wylot, Jakub Mieczkowski, Sylwia Niedziółka, Bożena Kamińska, Małgorzata Zawadzka
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0123316

Gene Profiling Characteristics of Radioadaptive Response in AG01522 Normal Human Fibroblasts
Cited by: 18
Author(s): Jue Hou, Fan Wang, Peizhong Kong, K.N. Yu, Hongzhi Wang, Wei Han
Software Mentions: 2
Published: over 11 years ago

10.1186/s12967-015-0384-5

DNA methylation patterns in newborns exposed to tobacco in utero
Cited by: 70
Author(s): Carmen Ivorra, Mario F. Fraga, Gustavo F. Bayón, Agustín F. Fernández, Consuelo García-Vicent, Felipe Javier Chaves, Josep Redón, Empar Lurbe
Software Mentions: 2
Published: over 11 years ago

10.3389/fmolb.2020.563922

Characteristic Analysis of Featured Genes Associated With Stemness Indices in Colorectal Cancer
Cited by: 7
Author(s): Yongqu Lu, Xin Zhou, Zhenzhen Liu, Wendong Wang, Fēi Li, Wei Fu
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0066513

Behavioural and Brain Gene Expression Profiling in Pigs during Tail Biting Outbreaks – Evidence of a Tail Biting Resistant Phenotype
Cited by: 27
Author(s): Emma Brunberg, Per Jensen, Anders Isaksson, Linda J. Keeling
Software Mentions: 2
Published: over 13 years ago

10.3906/biy-2009-56

Transcriptome profiles associated with selenium-deficiency-dependent oxidative stress identify potential diagnostic and therapeutic targets in liver cancer cells
Cited by: 0
Author(s): Damla Gözen, Deniz Cansen Kahraman, Kübra Narci, Huma Shehwana, Özlen Konu, Rengül Çetin-Atalay
Software Mentions: 2
Published: over 5 years ago

10.1186/s12881-019-0791-1

Weighted correlation network and differential expression analyses identify candidate genes associated with BRAF gene in melanoma
Cited by: 9
Author(s): Bin Zhao, Yanqiu You, Weiping Zheng, Yunhan Ma, Yani Huo, Hongyi Liu, Yuanyuan Zhou, Wei Quan, Weibin Chen, Xiaohong Zhang, Fujun Li, Yilin Zhao
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2350-9-17

Genes implicated in multiple sclerosis pathogenesis from consilience of genotyping and expression profiles in relapse and remission
Cited by: 56
Author(s): Ariel Arthur, Patricia J. Armati, Chris R. Bye, Robert Heard, Graeme J. Stewart, John D. Pollard, David R. Booth
Software Mentions: 2
Published: over 18 years ago

10.1186/s12881-019-0832-9

A novel risk score system for assessment of ovarian cancer based on co-expression network analysis and expression level of five lncRNAs
Cited by: 30
Author(s): Qian Zhao, Conghong Fan
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-016-1062-1

QUADrATiC: scalable gene expression connectivity mapping for repurposing FDA-approved therapeutics
Cited by: 22
Author(s): Paul G. O’Reilly, Qing Wen, Peter Bankhead, Philip D. Dunne, Darragh G. McArt, Suzanne McPherson, Peter Hamilton, Ken I. Mills, Shudong Zhang
Software Mentions: 2
Published: over 10 years ago

10.1002/1878-0261.13035

Sex disparity in acute myeloid leukaemia with <i>FLT3</i> internal tandem duplication mutations: implications for prognosis
Cited by: 10
Author(s): Monica Hellesøy, Caroline Engen, Tim Grob, Bob Löwenberg, Peter J.M. Valk, Bjørn Tore Gjertsen
Software Mentions: 2
Published: about 5 years ago

10.1186/s12916-020-01735-2

Considerations for target oxygen saturation in COVID-19 patients: are we under-shooting?
Cited by: 82
Author(s): Niraj Shenoy, Rebecca A. Luchtel, Perminder Gulani
Software Mentions: 2
Published: about 6 years ago

10.3389/fmolb.2020.562416

Phosphatase and Tensin Homolog Mutation in Immune Cell Infiltration and Clinicopathological Features of Low-Grade Gliomas
Cited by: 2
Author(s): Feng Peng, Zhenqing Li, Yuchen Li, Yuelin Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12916-021-02044-y

Oral vitamin D supplementation induces transcriptomic changes in rectal mucosa that are linked to anti-tumour effects
Cited by: 6
Author(s): P G Vaughan-Shaw, Graeme R. Grimes, James P. Blackmur, Maria Timofeeva, Marion Walker, Li Yin Ooi, Victoria Svinti, Kevin Donnelly, Farhat V N Din, Susan M. Farrington, Malcolm Dunlop
Software Mentions: 2
Published: about 5 years ago

10.3390/biomedicines9030276

Discovery through Machine Learning and Preclinical Validation of Novel Anti-Diabetic Peptides
Cited by: 11
Author(s): Rory Casey, Alessandro Adelfio, Martin Connolly, Audrey Wall, Ian Holyer, Nora Khaldi
Software Mentions: 2
Published: over 5 years ago

10.1186/s12969-021-00556-8

The culture microenvironment of juvenile idiopathic arthritis synovial fibroblasts is favorable for endochondral bone formation through BMP4 and repressed by chondrocytes
Cited by: 3
Author(s): Megan M. Simonds, A. Schlefman, Suzanne M. McCahan, Kathleen E. Sullivan, Carlos D. Rosé, AnneMarie C. Brescia
Software Mentions: 2
Published: over 5 years ago

10.1186/s12969-020-00483-0

Juvenile idiopathic arthritis fibroblast-like synoviocytes influence chondrocytes to alter BMP antagonist expression demonstrating an interaction between the two prominent cell types involved in endochondral bone formation
Cited by: 2
Author(s): Megan M. Simonds, A. Schlefman, Suzanne M. McCahan, Kathleen E. Sullivan, Carlos D. Rosé, AnneMarie C. Brescia
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.7782

Identification of hub genes and small-molecule compounds related to intracerebral hemorrhage with bioinformatics analysis
Cited by: 17
Author(s): Zhendong Liu, Ruotian Zhang, Xin Chen, Penglei Yao, Tao Yan, Wenwu Liu, Jiawei Yao, Andrei Sokhatskii, Ilgiz Gareev, Shen Zhao
Software Mentions: 2
Published: almost 7 years ago

10.1002/mnfr.201600141

Maternal exposure to a Western-style diet causes differences in intestinal microbiota composition and gene expression of suckling mouse pups
Cited by: 32
Author(s): Wilma T. Steegenga, Mona Mischke, Carolien Lute, Mark V. Boekschoten, Ágnes Lendvai, Maurien Pruis, Henkjan J. Verkade, Bert J. M. van de Heijning, Jos Boekhorst, Harro M. Timmerman, Torsten Plösch, Michael Müller, Guido Hooiveld
Software Mentions: 2
Published: about 10 years ago

10.1002/mnfr.201900101

Integrated Analys of High‐Fat Challenge‐Induced Changes in Blood Cell Whole‐Genome Gene Expression
Cited by: 3
Author(s): Juri C. Matualatupauw, Colm O’Grada, Maria Hughes, Helen M. Roche, Lydia A. Afman, Jildau Bouwman
Software Mentions: 2
Published: almost 7 years ago

10.1002/cam4.610

Expression of aurora kinase A correlates with the Wnt‐modulator <scp>RACGAP</scp> 1 in gastric cancer
Cited by: 15
Author(s): Jan Bornschein, Jessica Nielitz, Ignat Drozdov, Michael Selgrad, Thomas Wex, Doerthe Jechorek, Alexander Link, Michael Vieth, Peter Malfertheiner
Software Mentions: 2
Published: over 10 years ago

10.1186/s12916-015-0489-y

RNY-derived small RNAs as a signature of coronary artery disease
Cited by: 32
Author(s): Emanuela Repetto, Laeticia Lichtenstein, Zoheir Hizir, Nedra Tekaya, Mohamed Benahmed, Jean‐Bernard Ruidavets, Laure‐Emmanuelle Zaragosi, Bertrand Fougère, Laura Bouchareychas, Annelise Genoux, Romain Lotte, Raymond Ruimy, Jean Ferrières, Pascal Barbry, Laurent O. Martinez, Michèle Trabucchi
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2334-13-393

Vitamin B6 reduces hippocampal apoptosis in experimental pneumococcal meningitis
Cited by: 22
Author(s): Denise C. Zysset-Burri, Caroline L. Bellac, Stephen L. Leib, Matthias Wittwer
Software Mentions: 2
Published: about 13 years ago

10.1186/s13613-021-00930-5

Association between delay in intensive care unit admission and the host response in patients with community-acquired pneumonia
Cited by: 6
Author(s): Liza Pereverzeva, Fabrice Uhel, Hessel Peters Sengers, Olaf L. Cremer, Marcus J. Schultz, Marc Bonten, Brendon P. Scicluna, Tom van der Poll
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2334-10-10

Modulation of hepatic PPAR expression during Ft LVS LPS-induced protection from Francisella tularensis LVS infection
Cited by: 8
Author(s): Saroj Kant Mohapatra, Leah E. Cole, Clive Evans, Bruno W. S. Sobral, Josep Bassaganya‐Riera, Raquel Hontecillas, Stefanie N. Vogel, Oswald Crasta
Software Mentions: 2
Published: over 16 years ago

10.1186/bcr2096

Serum biomarker profiles and response to neoadjuvant chemotherapy for locally advanced breast cancer
Cited by: 53
Author(s): Brian M. Nolen, Jeffrey R. Marks, Shlomo Ta'san, Alex Rand, Yun Wang, Kimberly Blackwell, Anna Lokshin
Software Mentions: 2
Published: over 18 years ago

10.1186/s13046-020-01646-3

IFI6 depletion inhibits esophageal squamous cell carcinoma progression through reactive oxygen species accumulation via mitochondrial dysfunction and endoplasmic reticulum stress
Cited by: 44
Author(s): Zhenchuan Liu, Shaorui Gu, Tiancheng Lu, Kaiqing Wu, Lei Li, Chunyan Dong, Yilu Zhou
Software Mentions: 2
Published: about 6 years ago

10.1186/s13024-015-0046-3

Ethosuximide ameliorates neurodegenerative disease phenotypes by modulating DAF-16/FOXO target gene expression
Cited by: 26
Author(s): Xi Chen, Hannah V. McCue, Shi Quan Wong, Sudhanva S. Kashyap, Brian C. Kraemer, Jeff W. Barclay, Robert D. Burgoyne, Alan Morgan
Software Mentions: 2
Published: almost 11 years ago

10.1128/mBio.01593-17

Selective Proteomic Analysis of Antibiotic-Tolerant Cellular Subpopulations in <i>Pseudomonas aeruginosa</i> Biofilms
Cited by: 41
Author(s): Brett M. Babin, Lydia Atangcho, Mark B. van Eldijk, Michael J. Sweredoski, Annie Moradian, Sonja Hess, Tim Tolker‐Nielsen, Dianne K. Newman, David A. Tirrell
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj.11427

Identification of diagnostic genes and vital microRNAs involved in rheumatoid arthritis: based on data mining and experimental verification
Cited by: 6
Author(s): Conglin Ren, Mingshuang Li, Yang Zheng, Fengqing Wu, Weibin Du, Renfu Quan
Software Mentions: 2
Published: over 5 years ago

10.1186/bcr3443

Liver × receptor ligands disrupt breast cancer cell proliferation through an E2F-mediated mechanism
Cited by: 66
Author(s): Trang Nguyen-Vu, Lise Lotte Vedin, Liu Ka, Philip Jonsson, Jean Z. Lin, Nicholes R. Candelaria, Lindsay P. Candelaria, Sridevi Addanki, Cecilia Williams, Jan‐Åke Gustafsson, Knut R. Steffensen, Chin Yo Lin
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0052407

Gene Specific Actions of Thyroid Hormone Receptor Subtypes
Cited by: 27
Author(s): Jean Z. Lin, Douglas H. Sieglaff, Chaoshen Yuan, Jing Su, Anitha Christy S. Arumanayagam, Sharareh Firouzbakht, Jaime Javier Cantú Pompa, Frances Denoto Reynolds, Xixi Zhou, Aleksandra Čvoro, Paul Webb
Software Mentions: 2
Published: over 13 years ago

10.1186/s13024-016-0135-y

Role of cytochrome c in α-synuclein radical formation: implications of α-synuclein in neuronal death in Maneb- and paraquat-induced model of Parkinson’s disease
Cited by: 43
Author(s): Ashutosh Kumar, Douglas Ganini, Ronald P. Mason
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2334-14-314

Inflammatory and myeloid-associated gene expression before and one day after infant vaccination with MVA85A correlates with induction of a T cell response
Cited by: 19
Author(s): Magali Matsumiya, Stephanie A. Harris, Iman Satti, Lisa Stockdale, Rachel Tanner, Matthew K. O’Shea, Michèle Tameris, Hassan Mahomed, Mark Hatherill, Thomas J. Scriba, Willem A. Hanekom, Helen McShane, Helen A. Fletcher
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0083719

The Glycome of Normal and Malignant Plasma Cells
Cited by: 13
Author(s): Thomas Michel, Anja Seckinger, Dirk Hose, Mindaugas Andrulis, Jérôme Moreaux, Thomas Hielscher, Martina Willhauck‐Fleckenstein, Anette Merling, Uta Bertsch, Anna Jauch, Hartmut Goldschmidt, Bernard Klein, Reinhard Schwartz‐Albiez
Software Mentions: 2
Published: over 12 years ago

10.1007/s12035-018-1354-8

Immunosignature Analysis of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)
Cited by: 10
Author(s): Oliver P. Günther, Jennifer L. Gardy, Phillip Stafford, Øystein Fluge, Olav Mella, Patrick Tang, Ruth R. Miller, Shoshana Parker, Stephen Albert Johnston, David M. Patrick
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0115778

Prenatal Metformin Exposure in a Maternal High Fat Diet Mouse Model Alters the Transcriptome and Modifies the Metabolic Responses of the Offspring
Cited by: 45
Author(s): Henriikka Salomäki, Merja Heinäniemi, Laura H. Vähätalo, Liisa Ailanen, Kim Eerola, Suvi T. Ruohonen, Ullamari Pesonen, Markku Koulu
Software Mentions: 2
Published: over 11 years ago

10.7717/peerj.6343

The identification of gene signature and critical pathway associated with childhood-onset type 2 diabetes
Cited by: 4
Author(s): Keren Jia, Yingcheng Wu, Jingyi Ju, Liyang Wang, Lili Shi, Huiqun Wu, Kui Jiang, Jiancheng Dong
Software Mentions: 2
Published: over 7 years ago

10.3390/cells9051274

Evidence for Overlapping and Distinct Biological Activities and Transcriptional Targets Triggered by Fibroblast Growth Factor Receptor 2b Signaling between Mid- and Early Pseudoglandular Stages of Mouse Lung Development
Cited by: 12
Author(s): Matthew R. Jones, Arun Lingampally, Jin Wu, Jamschid Sedighi, Negah Ahmadvand, Jochen Wilhelm, Ana Ivonne Vazquez‐Armendariz, Susanne Herold, Chengshui Chen, Jin‐San Zhang, Savério Bellusci, Cho-Ming Chao
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2172-13-12

Molecular pathway profiling of T lymphocyte signal transduction pathways; Th1 and Th2 genomic fingerprints are defined by TCR and CD28-mediated signaling
Cited by: 44
Author(s): Ruben Smeets, Wilco W. M. Fleuren, Xiaotian He, Paul Vink, Frank Wijnands, Monika Górecka, Henri Klop, Sussane Bauerschmidt, Anja Garritsen, Hans J. P. M. Koenen, Irma Joosten, Annemieke M. H. Boots, Wynand Alkema
Software Mentions: 2
Published: over 14 years ago

10.1186/1471-2105-9-283

Improving the prediction accuracy in classification using the combined data sets by ranks of gene expressions
Cited by: 14
Author(s): Ki Yeol Kim, Dong Hyuk Ki, Hei‐Cheul Jeung, Hyun Cheol Chung, Sun Young Rha
Software Mentions: 2
Published: over 18 years ago

10.1111/mmi.14250

Defining the regulon of genes controlled by σ^E, a key regulator of the cell envelope stress response in<i>Streptomyces coelicolor</i>
Cited by: 21
Author(s): Ngat T. Tran, Xiangyan Huang, Hee‐Jeon Hong, Matthew J. Bush, Govind Chandra, Daniela Pinto, Maureen J. Bibb, Matthew I. Hutchings, Thorsten Mascher, Mark J. Buttner
Software Mentions: 2
Published: over 7 years ago