10.1186/s12885-020-07075-x

Immune-related genes in tumor-specific CD4+ and CD8+ T cells in colon cancer
Cited by: 15
Author(s): Yang Xi, Wei Wu, Yuefen Pan, Qing Zhou, Jingying Xu, Shuwen Han
Software Mentions: 2
Published: about 6 years ago

10.1186/s12885-021-07857-x

ETV4 plays a role on the primary events during the adenoma-adenocarcinoma progression in colorectal cancer
Cited by: 8
Author(s): Aline Simoneti Fonseca, Anelisa Ramão, Matheus Carvalho Bürger, Jorge Estefano Santana de Souza, Dalila Lucíola Zanette, Greice Andreotti de Molfetta, Luíza Ferreira de Araújo, Rafaela de Barros e Lima Bueno, Graziela Moura Aguiar, Jéssica Rodrigues Plaça, Cleidson de Pádua Alves, Anemari Ramos Dinarte dos Santos, Daniel Onofre Vidal, Gyl Eanes Barros Silva, Rodrigo Alexandre Panepucci, Fernanda Maris Peria, Omar Féres, José Joaquim Ribeiro da Rocha, Marco Antônio Zago, Wilson A. Silva
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2407-14-552

E-cadherin loss alters cytoskeletal organization and adhesion in non-malignant breast cells but is insufficient to induce an epithelial-mesenchymal transition
Cited by: 105
Author(s): Augustine Chen, Henry Beetham, Michael A. Black, Rashmi Priya, Bryony J. Telford, Joanne Guest, George A. R. Wiggins, Tanis Godwin, Alpha S. Yap, Parry Guilford
Software Mentions: 2
Published: about 12 years ago

10.1186/1471-2407-13-175

Systematic antibody generation and validation via tissue microarray technology leading to identification of a novel protein prognostic panel in breast cancer
Cited by: 45
Author(s): Patrick C O ́Leary, Sarah Penny, Roisin T. Dolan, Catherine M. Kelly, Stephen F. Madden, Elton Rexhepaj, Donal J. Brennan, Amanda McCann, Fredrik Pontén, Mathias Uhlén, Radosław Zagożdżon, Michael J. Duffy, Malcolm R. Kell, Karin Jirström, William M. Gallagher
Software Mentions: 2
Published: over 13 years ago

10.1186/s12885-017-3897-x

Invasive micropapillary carcinoma of the breast overexpresses MUC4 and is associated with poor outcome to adjuvant trastuzumab in HER2-positive breast cancer
Cited by: 18
Author(s): María F. Mercogliano, Gloria Inurrigarro, Mara De Martino, Leandro Venturutti, Martín A. Rivas, Rosalía Cordo Russo, Cecilia J. Proietti, Elmer Fernández, Isabel Frahm, Sabrina Barchuk, Daniel H. Allemand, Silvina Figurelli, Ernesto Gil Deza, Sandra Ares, Felipe G. Gercovich, E Cortese, Matías Amasino, Pablo Guzmán, Juan Carlos Roa, Patricia V. Elizalde, Roxana Schillaci
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12885-020-07657-9

Identification of a four-gene panel predicting overall survival for lung adenocarcinoma
Cited by: 20
Author(s): Chunyu Li, Long Qizhong, Zhang Danni, Jun Li, Xianming Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12885-021-08604-y

Seven key hub genes identified by gene co-expression network in cutaneous squamous cell carcinoma
Cited by: 13
Author(s): Huizhen Chen, Jiankang Yang, Wenjuan Wu
Software Mentions: 2
Published: about 5 years ago

10.1186/s12885-021-07972-9

Identification and validation of a five-lncRNA prognostic signature related to Glioma using bioinformatics analysis
Cited by: 8
Author(s): Chunyu Zhang, Haitao Liu, Pengfei Xu, Yinqiu Tan, Yang Xu, Long Wang, Baohui Liu, Daofeng Tian
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-021-07845-1

Inhibitory effect of sodium butyrate on colorectal cancer cells and construction of the related molecular network
Cited by: 16
Author(s): Yang Xi, Zhuang Jing, Wei Wu, Chun Zhang, Qi Qi, Qing Zhou, Jingying Xu, Shuwen Han
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-020-07302-5

Reconstruction of lncRNA-miRNA-mRNA network based on competitive endogenous RNA reveals functional lncRNAs in skin cutaneous melanoma
Cited by: 12
Author(s): Junyou Zhu, Jin Deng, Lijun Zhang, Jingling Zhao, Fei Zhou, Ning Liu, Ruizhao Cai, Jun Wu, Bin Shu, Shunan Qi
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2407-5-68

Overexpression of cathepsin f, matrix metalloproteinases 11 and 12 in cervical cancer
Cited by: 76
Author(s): Guelaguetza Vázquez-Ortíz, Patricia Piña‐Sánchez, Karla Moreno Vázquez, A. López Dueñas, Lucía Taja, Patricia Mendoza, José García, Mauricio Salcedo
Software Mentions: 2
Published: about 21 years ago

10.1186/1471-2407-12-380

SNP microarray analyses reveal copy number alterations and progressive genome reorganization during tumor development in SVT/t driven mice breast cancer
Cited by: 6
Author(s): Christoph Standfuß, Heike Pospisil, Andreas Klein
Software Mentions: 2
Published: about 14 years ago

10.1186/s12885-021-08314-5

Integrated analysis of methylation-driven genes and pretreatment prognostic factors in patients with hepatocellular carcinoma
Cited by: 5
Author(s): Dongsheng He, Shengyin Liao, Lifang Cai, Wei‐Ming Huang, Xuehua Xie, Mengxing You
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-020-6515-2

Comprehensive profiling of circular RNA expressions reveals potential diagnostic and prognostic biomarkers in multiple myeloma
Cited by: 44
Author(s): Fan Zhou, Dongjiao Wang, Wei Wei, Haimin Chen, Haotian Shi, Nina Zhou, Lixia Wu, Rong Peng
Software Mentions: 2
Published: over 6 years ago

10.1186/s12885-021-08798-1

Stemness-related LncRNA pair signature for predicting therapy response in gastric cancer
Cited by: 14
Author(s): Quan Jiang, Hao Chen, Zhaoqing Tang, Jie Sun, Yuanyuan Ruan, Fenglin Liu, Yihong Sun
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12885-018-5023-0

Effects of PKM2 on global metabolic changes and prognosis in hepatocellular carcinoma: from gene expression to drug discovery
Cited by: 19
Author(s): Wen Lv, Dahai Liu, Xing-Cun Liu, Tienan Feng, Lei Li, Biyun Qian, Wen‐Xing Li
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12885-020-07596-5

Systematic profiling of diagnostic and prognostic value of autophagy-related genes for sarcoma patients
Cited by: 2
Author(s): Yuanhe Wang, Jianyi Li, Chen Shao, Xiaojie Tang, Yukun Du, Tongshuai Xu, Zheng Zhao, Huiqiang Hu, Yingyi Sheng, Chuan Hu, Yongming Xi
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-015-1187-z

A pooled shRNA screen for regulators of primary mammary stem and progenitor cells identifies roles for Asap1 and Prox1
Cited by: 30
Author(s): Julie Sheridan, Matthew E. Ritchie, Sarah A. Best, Kun Jiang, Tamara Beck, François Vaillant, Kenneth Liu, Ross A. Dickins, Gordon K. Smyth, Geoffrey J. Lindeman, Jane E. Visvader
Software Mentions: 2
Published: over 11 years ago

10.1186/s12885-018-4373-y

Cholesterol synthesis pathway genes in prostate cancer are transcriptionally downregulated when tissue confounding is minimized
Cited by: 11
Author(s): Morten Rye, Helena Bertilsson, Maria Andersen, Kjersti Rise, Tone Frost Bathen, Finn Drabløs, May‐Britt Tessem
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2407-12-232

MicroRNA-143 down-regulates Hexokinase 2 in colon cancer cells
Cited by: 127
Author(s): Lea H. Gregersen, Anders Jacobsen, Lisa B. Frankel, Jiayu Wen, Anders Krogh, Anders H. Lund
Software Mentions: 2
Published: over 14 years ago

10.1186/1471-2407-12-22

RNA expression patterns in serum microvesicles from patients with glioblastoma multiforme and controls
Cited by: 166
Author(s): Mikkel Noerholm, Leonora Balaj, Tobias Limperg, Afshin Salehi, Lin Zhu, Fred H. Hochberg, Xandra O. Breakefield, Bob S. Carter, Johan Skog
Software Mentions: 2
Published: over 14 years ago

10.1186/s12885-021-08305-6

Characterization of alternative splicing events and prognostic signatures in breast cancer
Cited by: 1
Author(s): Pihua Han, Jianguo Zhu, Guang Feng, Zizhang Wang, Yanni Ding
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2407-12-527

Pancreatic cancer circulating tumour cells express a cell motility gene signature that predicts survival after surgery
Cited by: 57
Author(s): Gregory Sergeant, Rudy van Eijsden, Tania Roskams, Van Duppen, Baki Topal
Software Mentions: 2
Published: almost 14 years ago

10.1186/s12885-016-2540-6

Prognostic relevance of molecular subtypes and master regulators in pancreatic ductal adenocarcinoma
Cited by: 98
Author(s): Rekin’s Janky, María Mercedes Binda, Joke Allemeersch, Ann Van den Broeck, Olivier Govaere, Johannes V. Swinnen, Tania Roskams, Stein Aerts, Baki Topal
Software Mentions: 2
Published: about 10 years ago

10.1186/s12885-020-07731-2

Integrated analysis of mRNA and miRNA profiles revealed the role of miR-193 and miR-210 as potential regulatory biomarkers in different molecular subtypes of breast cancer
Cited by: 12
Author(s): Adriane Feijó Evangelista, Renato Oliveira, Viviane Aline Oliveira Silva, René Aloísio da Costa Vieira, Rui Manuel Reis, Márcia Maria Chiquitelli Marques
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-020-06829-x

Microarray data analysis on gene and miRNA expression to identify biomarkers in non-small cell lung cancer
Cited by: 30
Author(s): Xiang Jin, Yinghui Guan, Zhen Zhang, Hongyue Wang
Software Mentions: 2
Published: over 6 years ago

10.1186/s12872-021-02146-8

Identification of candidate biomarkers and therapeutic agents for heart failure by bioinformatics analysis
Cited by: 19
Author(s): Vijayakrishna Kolur, Basavaraj Vastrad, Chanabasayya Vastrad, Shivakumar Kotturshetti, Anandkumar Tengli
Software Mentions: 2
Published: about 5 years ago

10.1186/s12872-021-02040-3

Significances of viable synergistic autophagy-associated cathepsin B and cathepsin D (CTSB/CTSD) as potential biomarkers for sudden cardiac death
Cited by: 11
Author(s): Jialin Dai, Qiong Zhang, Changwu Wan, Jiangjin Liu, Qiaojun Zhang, Yu Yu, Jie Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-213X-11-2

Targets downstream of Cdk8 in Dictyostelium development
Cited by: 4
Author(s): David Greene, Gareth Bloomfield, Jason Skelton, Alasdair Ivens, Catherine J. Pears
Software Mentions: 2
Published: over 15 years ago

10.1186/1471-213X-9-54

Smad4-dependent pathways control basement membrane deposition and endodermal cell migration at early stages of mouse development
Cited by: 48
Author(s): Ita Costello, Christine A. Biondi, Jennifer Taylor, Elizabeth K. Bikoff, Elizabeth J. Robertson
Software Mentions: 2
Published: almost 17 years ago

10.1186/s12902-021-00718-5

Investigation of candidate genes and mechanisms underlying obesity associated type 2 diabetes mellitus using bioinformatics analysis and screening of small drug molecules
Cited by: 12
Author(s): G Prashanth, Basavaraj Vastrad, Anandkumar Tengli, Chanabasayya Vastrad, Iranna Kotturshetti
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2148-13-133

Suboptimal evolutionary novel environments promote singular altered gravity responses of transcriptome during Drosophila metamorphosis
Cited by: 8
Author(s): Raúl Herranz, Oliver Larkin, R. Hill, Irene López‐Vidriero, Jack J. W. A. van Loon, F. Javier Medina
Software Mentions: 2
Published: over 13 years ago

10.1186/s12862-018-1254-6

Evolution in chronic cold: varied loss of cellular response to heat in Antarctic notothenioid fish
Cited by: 34
Author(s): Kevin T. Bilyk, Luis Vargas‐Chacoff, C.‐H. Christina Cheng
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12876-018-0752-8

Expression profiling and intracellular localization studies of the novel Proline-, Histidine-, and Glycine-rich protein 1 suggest an essential role in gastro-intestinal epithelium and a potential clinical application in colorectal cancer diagnostics
Cited by: 16
Author(s): Satu Oltedal, Ivar Skaland, Jodi Maple‐Grødem, Kjersti Tjensvoll, Emiel A. M. Janssen, Bjørnar Gilje, Rune Smaaland, Reino Heikkilä, Oddmund Nordgård
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2156-11-25

High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta
Cited by: 63
Author(s): Caroline Daelemans, Matthew E. Ritchie, Guillaume Smits, Sayeda Abu-Amero, Ian Sudbery, Matthew S. Forrest, Susana Campino, Taane G. Clark, Philip Stanier, Dominic P. Kwiatkowski, Panos Deloukas, Emmanouil T. Dermitzakis, Simon Tavaré, Gudrun E. Moore, Ian Dunham
Software Mentions: 2
Published: over 16 years ago

10.1186/s12863-018-0630-y

Molecular mechanism of estrogen-mediated neuroprotection in the relief of brain ischemic injury
Cited by: 8
Author(s): Jiaxuan He, Ya Gao, Gang Wu, Xiaoming Li, Yong Zhang, Weikang Pan, Hui Yu
Software Mentions: 2
Published: about 8 years ago

10.1186/s12863-016-0464-4

Haploid yeast cells undergo a reversible phenotypic switch associated with chromosome II copy number
Cited by: 9
Author(s): Polina Drozdova, Л. Н. Миронова, Galina A. Zhouravleva
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12863-021-00976-1

Transcriptome signature of miRNA-26b KO mouse model suggests novel targets
Cited by: 3
Author(s): Emiel P. C. van der Vorst, Mario Pepe, Linsey J. F. Peters, Markus Haberbosch, Yvonne Jansen, Ronald Naumann, Georgios T. Stathopoulos, Kiril Bidzhekov
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2164-15-381

Dynamics of mRNA and polysomal abundance in early 3T3-L1 adipogenesis
Cited by: 7
Author(s): Silvia von der Heyde, Carolin Fromm‐Dornieden, Gabriela Salinas-Riester, Tim Beißbarth, Bernhard Baumgartner
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2164-14-182

Distinct angiogenesis roles and surface markers of early and late endothelial progenitor cells revealed by functional group analyses
Cited by: 94
Author(s): Cheng Chung Cheng, Shing Jyh Chang, Yu Neng Chueh, Tsung Hui Huang, Po Hsun Huang, Soo‐Chen Cheng, Tsung Neng Tsai, Jaw Wen Chen, Hsei Wei Wang
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2164-13-441

Transcriptomic and metabolomic profiling of chicken adipose tissue in response to insulin neutralization and fasting
Cited by: 87
Author(s): Bo Ji, Ben Ernest, Jessica Gooding, Suchita Das, Arnold M. Saxton, Jean Simon, Joëlle Dupont, Sonia Métayer-Coustard, Shawn R. Campagna, Brynn H. Voy
Software Mentions: 2
Published: about 14 years ago

10.1186/s12864-017-3656-z

Herboxidiene triggers splicing repression and abiotic stress responses in plants
Cited by: 32
Author(s): Sahar Alshareef, Lexiang Yu, Haroon Butt, Kadarkaraisamy Mariappan, Moussa Benhamed, Magdy M. Mahfouz
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-021-07947-x

A single chromosome strain of S. cerevisiae exhibits diminished ethanol metabolism and tolerance
Cited by: 1
Author(s): Tyler W. Doughty, Rong Yu, Lucy Fang I. Chao, Zhongjun Qin, Verena Siewers, Jens Nielsen
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2164-14-681

Differential adaptation to multi-stressed conditions of wine fermentation revealed by variations in yeast regulatory networks
Cited by: 32
Author(s): Christian Brion, Chloé Ambroset, Isabelle Sanchez, Jean Luc Legras, Bruno Blondin
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12864-015-2034-y

Sex differences in DNA methylation assessed by 450 K BeadChip in newborns
Cited by: 154
Author(s): Paul Yousefi, Karen Huen, Vrushank Davé, Lisa F. Barcellos, Brenda Eskenazi, Nina Holland
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2164-13-180

Genome wide response to dietary tetradecylthioacetic acid supplementation in the heart of Atlantic Salmon (Salmo salar L)
Cited by: 2
Author(s): Fabian Grammes, Kjell‐Arne Rørvik, Magny S. Thomassen, Rolf K. Berge, Harald Takle
Software Mentions: 2
Published: over 14 years ago

10.1186/s12864-021-07667-2

Distinctive gene expression patterns and imprinting signatures revealed in reciprocal crosses between cattle sub-species
Cited by: 3
Author(s): Ruijie Liu, Rick Tearle, Wai Yee Low, Tong Chen, D. A. Thomsen, Timothy P. L. Smith, Stefan Hiendleder, J. L. Williams
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-12-526

Variation in chromosome copy number influences the virulence of Cryptococcus neoformans and occurs in isolates from AIDS patients
Cited by: 66
Author(s): Guanggan Hu, Joyce Wang, Jaehyuk Choi, Won Hee Jung, Iris Liu, Anastasia P. Litvintseva, Tihana Bicanic, Rajeev Aurora, Thomas G. Mitchell, John R. Perfect, James W. Kronstad
Software Mentions: 2
Published: almost 15 years ago

10.1186/1471-2164-10-197

Gene set internal coherence in the context of functional profiling
Cited by: 32
Author(s): David Montaner, Pablo Mínguez, Fátima Al‐Shahrour, Joaquı́n Dopazo
Software Mentions: 2
Published: over 17 years ago

10.1186/1471-2164-13-317

A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation
Cited by: 64
Author(s): Magalie Celton, Isabelle Sanchez, Anne Goelzer, Vincent Fromion, Carole Camarasa, Sylvie Dequin
Software Mentions: 2
Published: about 14 years ago

10.1186/1471-2164-14-840

Genome-wide analysis of coordinated transcript abundance during seed development in different Brassica rapa morphotypes
Cited by: 25
Author(s): Ram Kumar Basnet, Natalia M. Moreno-Pachon, Keqin Lin, Johan Bucher, Richard G. F. Visser, Chris Maliepaard, Guusje Bonnema
Software Mentions: 2
Published: almost 13 years ago

10.1186/1471-2164-12-279

Transcriptome map of plant mitochondria reveals islands of unexpected transcribed regions
Cited by: 25
Author(s): Sota Fujii, Takushi Toda, Shunsuke Kikuchi, Rikako Suzuki, Koji Yokoyama, Hiroko Tsuchida, Kentarô Yano, Kinya Toriyama
Software Mentions: 2
Published: over 15 years ago

10.1186/1471-2164-11-711

Comparison of transcriptomic landscapes of bovine embryos using RNA-Seq
Cited by: 74
Author(s): Wen Huang, Hasan Khatib
Software Mentions: 2
Published: over 16 years ago

10.1186/s12864-019-6438-y

Identification and characterization of genes frequently responsive to Xanthomonas oryzae pv. oryzae and Magnaporthe oryzae infections in rice
Cited by: 7
Author(s): Weiwen Kong, Li Ding, Xue Xia
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-11-7

Decoding pooled RNAi screens by means of barcode tiling arrays
Cited by: 10
Author(s): Michael Boettcher, Johannes Fredebohm, Amin Moghaddas Gholami, Yafit Hachmo, Iris Dotan, Dan Canaani, Jörg D. Hoheisel
Software Mentions: 2
Published: over 16 years ago

10.1186/s12864-016-2668-4

Perturbation of the two-component signal transduction system, BprRS, results in attenuated virulence and motility defects in Burkholderia pseudomallei
Cited by: 18
Author(s): Natalie R. Lazar Adler, Elizabeth M. Allwood, Deanna Deveson Lucas, Paul F. Harrison, Stephen C. Watts, Alexandra Dimitropoulos, Puthayalai Treerat, Priyangi Anupama Alwis, Rodney J. Devenish, Mark Prescott, Brenda Govan, Ben Adler, Marina Harper, John D. Boyce
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2164-13-254

Divergent gene expression in the conserved dauer stage of the nematodes Pristionchus pacificus and Caenorhabditis elegans
Cited by: 39
Author(s): Amit Sinha, Ralf J. Sommer, Christoph Dieterich
Software Mentions: 2
Published: about 14 years ago

10.1186/1471-2164-13-59

Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens
Cited by: 132
Author(s): Daniel Nätt, Carl-Johan Rubin, Dominic Wright, Martin Johnsson, Johan Bélteky, Leif Andersson, Per Jensen
Software Mentions: 2
Published: over 14 years ago

10.1186/1471-2164-7-254

Proximal genomic localization of STAT1 binding and regulated transcriptional activity
Cited by: 18
Author(s): Samuel Wormald, Douglas J. Hilton, Gordon K. Smyth, Terence P. Speed
Software Mentions: 2
Published: almost 20 years ago

10.1186/1471-2164-10-S2-S6

BioNetBuilder2.0: bringing systems biology to chicken and other model organisms
Cited by: 22
Author(s): Jay H. Konieczka, Kevin Drew, Alex Pine, Kevin Belasco, Sean Davey, Tatiana A. Yatskievych, Richard Bonneau, Parker B. Antin
Software Mentions: 2
Published: about 17 years ago

10.1186/1471-2164-11-638

Integrated genomics of susceptibility to alkylator-induced leukemia in mice
Cited by: 5
Author(s): Patrick Cahan, Timothy A. Graubert
Software Mentions: 2
Published: almost 16 years ago

10.1186/s12864-015-1654-6

Partial depletion of yolk during zebrafish embryogenesis changes the dynamics of methionine cycle and metabolic genes
Cited by: 7
Author(s): Yunxian Huang, Sam E.V. Linsen
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2164-9-197

Transcriptome analysis identifies pathways associated with enhanced maternal performance in QSi5 mice
Cited by: 18
Author(s): Palaniappan Ramanathan, Ian Martin, Margaret Gardiner-Garden, Peter Thomson, Rabun Taylor, Christopher J. Ormandy, C. Moran, Peter Williamson
Software Mentions: 2
Published: over 18 years ago

10.1186/1471-2164-15-644

Prediction of miRNA-mRNA associations in Alzheimer’s disease mice using network topology
Cited by: 24
Author(s): Hyun Ho Noh, Charny Park, Soojun Park, Young Seek Lee, Soo Young Cho, Hyemyung Seo
Software Mentions: 2
Published: about 12 years ago

10.1186/s12864-020-6686-x

Impact of protein supplementation during endurance training on changes in skeletal muscle transcriptome
Cited by: 4
Author(s): Pim Knuiman, Roland W. J. Hangelbroek, Mark V. Boekschoten, Maria T. E. Hopman, Marco Mensink
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-018-4578-0

The constitutive differential transcriptome of a brain circuit for vocal learning
Cited by: 23
Author(s): Peter V. Lovell, Nicole A. Huizinga, Samantha R. Friedrich, Morgan Wirthlin, Claudio V. Mello
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2164-15-662

The synthetic glucocorticoids prednisolone and dexamethasone regulate the same genes in acute lymphoblastic leukemia cells
Cited by: 21
Author(s): Daniel Bindreither, Simone Ecker, Barbara Gschirr, Anita Kofler, Reinhard Kofler, Johannes Michael Rainer
Software Mentions: 2
Published: about 12 years ago

10.1186/1471-2164-11-132

Pediatric primary central nervous system germ cell tumors of different prognosis groups show characteristic miRNome traits and chromosome copy number variations
Cited by: 47
Author(s): Hsei Wei Wang, Yu-Hsueh Wu, Jui Yu Hsieh, Muh Lii Liang, Meng En Chao, Da Jung Liu, Ming Hsu, Tai-Tong Wong
Software Mentions: 2
Published: over 16 years ago

10.1186/1471-2164-15-435

Dynamic imbalance between cancer cell subpopulations induced by Transforming Growth Factor Beta (TGF-β) is associated with a DNA methylome switch
Cited by: 26
Author(s): Marion Martin, Pierre‐Benoit Ancey, Marie-Pierre Cros, G. Durand, Florence Le Calvez-Kelm, Héctor Hernandez-Vargas, Zdenko Herceg
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2164-13-160

Gene expression signatures modulated by epidermal growth factor receptor activation and their relationship to cetuximab resistance in head and neck squamous cell carcinoma
Cited by: 32
Author(s): Elana J. Fertig, Qing Ren, Haixia Cheng, Hyōe Hatakeyama, Adam P. Dicker, Ulrich Rodeck, Michael Considine, Michael F. Ochs, Christine H. Chung
Software Mentions: 2
Published: over 14 years ago

10.1186/1471-2164-8-96

Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arrays
Cited by: 48
Author(s): Ann Hess, Hari Iyer
Software Mentions: 2
Published: over 19 years ago

10.1186/s12864-018-4618-9

DNA Methylation variability among individuals is related to CpGs cluster density and evolutionary signatures
Cited by: 19
Author(s): Domenico Palumbo, Ornella Affinito, Antonella Monticelli, Sérgio Cocozza
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-018-5259-8

PNPase is involved in the coordination of mRNA degradation and expression in stationary phase cells of Escherichia coli
Cited by: 15
Author(s): Clémentine Dressaire, Vânia Pobre, Sandrine Laguerre, Laurence Girbal, Cecília M. Arraiano, Muriel Cocaign‐Bousquet
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2164-12-330

MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters
Cited by: 23
Author(s): Bas Jansen, Iziah E. Sama, Dagmar Eleveld-Trancikova, Maaike A. van Hout-Kuijer, Joop H. Jansen, Martijn A. Huynen, Gosse J. Adema
Software Mentions: 2
Published: about 15 years ago

10.1186/1471-2164-8-307

Living with an imperfect cell wall: compensation of femAB inactivation in Staphylococcus aureus
Cited by: 34
Author(s): Judith Hübscher, Andrea Jansen, Oliver Kotte, Juliane Schäfer, Paul Majcherczyk, Llinos G. Harris, Gabriele Bierbaum, Matthias Heinemann, Brigitte Berger‐Bächi
Software Mentions: 2
Published: about 19 years ago

10.1186/1471-2164-13-369

Jasmonate and ethylene dependent defence gene expression and suppression of fungal virulence factors: two essential mechanisms of Fusarium head blight resistance in wheat?
Cited by: 103
Author(s): Sven Gottwald, Birgit Samans, Stefanie Lück, Wolfgang Friedt
Software Mentions: 2
Published: about 14 years ago

10.1186/s12864-015-2160-6

Genome-wide miR-155 and miR-802 target gene identification in the hippocampus of Ts65Dn Down syndrome mouse model by miRNA sponges
Cited by: 30
Author(s): Xavier Bofill-De Ros, Mónica Santos, María Vila-Casadesús, Eneko Villanueva, Núria Andreu, Mara Dierssen, Cristina Fillat
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2164-13-323

Brain transcriptome variation among behaviorally distinct strains of zebrafish (Danio rerio)
Cited by: 50
Author(s): Robert E. Drew, Matthew L. Settles, Erin Churchill, Shayna M Williams, Soniya Balli, Barrie D. Robison
Software Mentions: 2
Published: about 14 years ago

10.1186/1471-2164-15-735

Parallel selection on gene copy number variations through evolution of three-spined stickleback genomes
Cited by: 25
Author(s): Shotaro Hirase, Haruka Ozaki, Wataru Iwasaki
Software Mentions: 2
Published: over 12 years ago

10.1186/s12864-016-2469-9

Nur77-deficiency in bone marrow-derived macrophages modulates inflammatory responses, extracellular matrix homeostasis, phagocytosis and tolerance
Cited by: 30
Author(s): Anouk A.J. Hamers, Carmen Argmann, Perry D. Moerland, Duco S. Koenis, Goran Marinković, Milka Sokolović, Alex F. de Vos, Carlie J.M. de Vries, Claudia M. van Tiel
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2164-11-359

Prednisolone-induced differential gene expression in mouse liver carrying wild type or a dimerization-defective glucocorticoid receptor
Cited by: 98
Author(s): Raoul Frijters, Wilco W. M. Fleuren, Erik J. M. Toonen, Jan Tuckermann, Holger M. Reichardt, Hans van der Maaden, Andrea van Elsas, Marie-José van Lierop, Wim H.A. Dokter, Jacob de Vlieg, Wynand Alkema
Software Mentions: 2
Published: over 16 years ago

10.1186/1471-2164-14-483

A predicted functional gene network for the plant pathogen Phytophthora infestans as a framework for genomic biology
Cited by: 9
Author(s): Michael Seidl, Adrian Schneider, F. Govers, Berend Snel
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2164-15-327

Transcriptome profiling of liver of non-genetic low birth weight and long term health consequences
Cited by: 4
Author(s): Alberto Miranda, Angela Patricia López‐Cardona, Ricardo Laguna‐Barraza, Alexandra Calle, Irene López‐Vidriero, Belén Pintado, Alfonso Gutiérrez‐Adán
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2164-11-388

Expression of a retinoic acid signature in circulating CD34 cells from coronary artery disease patients
Cited by: 8
Author(s): Tineke C. T. M. van der Pouw Kraan, Stephan H. Schirmer, Joost O. Fledderus, Perry D. Moerland, Josefien M. Baggen, Thomas A. Leyen, A.M. van der Laan, Jan J. Piek, Niels van Royen, Anton J.G. Horrevoets
Software Mentions: 2
Published: over 16 years ago

10.1186/1471-2164-14-212

Species and condition specific adaptation of the transcriptional landscapes in Candida albicans and Candida dubliniensis
Cited by: 26
Author(s): Christian Grumaz, Stefan Lorenz, Philip Stevens, Elena Lindemann, Ulrike Schöck, Julia Rétey, Steffen Rupp, Kai Sohn
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2164-12-423

Testing the importance of jasmonate signalling in induction of plant defences upon cabbage aphid (Brevicoryne brassicae) attack
Cited by: 57
Author(s): Anna Kuśnierczyk, Diem Hong Tran, Per Winge, Tommy S Jørstad, John C. Reese, Joanna Troczyńska, Atle M. Bones
Software Mentions: 2
Published: about 15 years ago

10.1186/1471-2164-15-1001

Transcriptomics of the late gestation ovine fetal brain: modeling the co-expression of immune marker genes
Cited by: 11
Author(s): María Belén Rabaglino, Maureen Keller‐Wood, Charles E. Wood
Software Mentions: 2
Published: over 12 years ago

10.1186/s12864-018-5108-9

Developing specific molecular biomarkers for thermal stress in salmonids
Cited by: 83
Author(s): Arash Akbarzadeh, Oliver P. Günther, Aimee Lee S. Houde, Shaorong Li, Tobi J. Ming, Kenneth M. Jeffries, Scott G. Hinch, Kristina M. Miller
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12864-018-4517-0

Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature
Cited by: 37
Author(s): Waldo G. Nuez-Ortín, Chris Carter, Peter D. Nichols, Ira Cooke, Richard Wilson
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-017-4006-x

Fungal biomarker discovery by integration of classifiers
Cited by: 2
Author(s): J. Saraiva, Marcus Oswald, Antje Biering, Daniela Röll, Cora Assmann, Tilman E. Klassert, Markus Blaess, Kristin Czakai, Ralf A. Claus, Jürgen Löffler, Hortense Slevogt, Rainer König
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2164-12-262

GiSAO.db: a database for ageing research
Cited by: 3
Author(s): Edith Hofer, Gerhard Laschober, Matthias Hackl, Gerhard G. Thallinger, Günter Lepperdinger, Johannes Grillari, Pidder Jansen‐Dürr, Zlatko Trajanoski
Software Mentions: 2
Published: over 15 years ago

10.1186/s12864-015-1783-y

Cell cycle control, DNA damage repair, and apoptosis-related pathways control pre-ameloblasts differentiation during tooth development
Cited by: 28
Author(s): Chengcheng Liu, Yulong Niu, Xuedong Zhou, Xin Xu, Yi Yang, Yan Zhang, Liwei Zheng
Software Mentions: 2
Published: about 11 years ago

10.1186/s12864-015-2066-3

Patterns of gene expression and DNA methylation in human fetal and adult liver
Cited by: 24
Author(s): Susan M. Huse, Philip A. Gruppuso, Kim Boekelheide, Jennifer Sanders
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12864-016-3446-z

Compendium of TCDD-mediated transcriptomic response datasets in mammalian model systems
Cited by: 17
Author(s): Stephenie D. Prokopec, Kathleen E. Houlahan, Ren Sun, John D. Watson, Cindy Q. Yao, Jamie Lee, Christine P’ng, Renée Pang, Alexander H. Wu, Lauren C. Chong, Ashley B. Smith, Nicholas J. Harding, Ivy D. Moffat, Jere Lindén, Sanna Lensu, Allan B. Okey, Raimo Pohjanvirta, Paul C. Boutros
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2164-12-565

Evaluation of the NOD/SCID xenograft model for glucocorticoid-regulated gene expression in childhood B-cell precursor acute lymphoblastic leukemia
Cited by: 28
Author(s): Vivek Bhadri, Mark J. Cowley, Warren Kaplan, Toby N. Trahair, Richard B. Lock
Software Mentions: 2
Published: almost 15 years ago

10.1186/1471-2164-15-527

Integrating transcriptional, metabolomic, and physiological responses to drought stress and recovery in switchgrass (Panicum virgatum L.)
Cited by: 73
Author(s): Eli Meyer, Michael J. Aspinwall, David B. Lowry, Juan Diego Palacio-Mejía, Tierney L. Logan, Philip A. Fay, Thomas E. Juenger
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2164-10-461

Low oxygen levels as a trigger for enhancement of respiratory metabolism in Saccharomyces cerevisiae
Cited by: 53
Author(s): Eija Rintala, Mervi Toivari, Juha-Pekka Pitkänen, Marilyn G. Wiebe, Laura Ruohonen, Merja Penttilä
Software Mentions: 2
Published: over 17 years ago

10.1186/s12864-020-07317-z

Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour
Cited by: 5
Author(s): Sónia Rey, Xing‐Kun Jin, Børge Damsgård, Marie‐Laure Bégout, Simon Mackenzie
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-015-2196-7

Genome-wide identification and evolutionary analyses of bZIP transcription factors in wheat and its relatives and expression profiles of anther development related TabZIP genes
Cited by: 46
Author(s): Xueyin Li, Shiqing Gao, Yimiao Tang, Lei Li, Fengjie Zhang, Biane Feng, Zhaofeng Fang, Lingjian Ma, Changping Zhao
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2164-13-313

Mapping the polysaccharide degradation potential of Aspergillus niger
Cited by: 35
Author(s): Mikael Rørdam Andersen, Malene Giese, Ronald P. de Vries, Jens Nielsen
Software Mentions: 2
Published: about 14 years ago