10.1186/s12885-021-08358-7

Identification of novel hub genes associated with gastric cancer using integrated bioinformatics analysis
Cited by: 17
Author(s): Xin Lu, Jiaqian Zhang, Sheng‐Xiao Zhang, Jun Qiao, Mengting Qiu, Xiangrong Liu, Xiaoxia Chen, Chong Gao, Huan-Hu Zhang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-021-08356-9

Genome instability-related long non-coding RNA in clear renal cell carcinoma determined using computational biology
Cited by: 9
Author(s): Yutao Wang, Kexin Yan, Linhui Wang, Jianbin Bi
Software Mentions: 3
Published: about 5 years ago

10.18632/aging.203451

Intravascular emboli relates to immunosuppressive tumor microenvironment and predicts prognosis in stage III colorectal cancer
Cited by: 1
Author(s): Xiangping Song, Di Xie, Fengbo Tan, Yuan Zhou, Yuqiang Li, Zhongyi Zhou, Qian Pei, Haiping Pei
Software Mentions: 3
Published: about 5 years ago

10.1038/s41419-021-03955-7

LncRNA RCAT1 promotes tumor progression and metastasis via miR-214-5p/E2F2 axis in renal cell carcinoma
Cited by: 22
Author(s): Renbo Guo, Benkui Zou, Yiran Liang, Jiasheng Bian, Jian Xu, Qian Zhou, Chao Zhang, Tao Chen, Mei Yang, Huansheng Wang, Fajun Pei, Zhonghua Xu
Software Mentions: 3
Published: about 5 years ago

10.3389/fcell.2020.561907

DNA Methylation Associated With Diabetic Kidney Disease in Blood-Derived DNA
Cited by: 19
Author(s): Laura Smyth, Christopher Patterson, Elizabeth Swan, Alexander P. Maxwell, Amy Jayne McKnight
Software Mentions: 3
Published: almost 6 years ago

10.3389/fcell.2021.694769

Comparison of Genome-Wide DNA Methylation Profiles of Human Fetal Tissues Conceived by in vitro Fertilization and Natural Conception
Cited by: 4
Author(s): Ye Liu, Xinzhu Li, Songchang Chen, Li Wang, Ya‐Jing Tan, Xiaocui Li, Lin Tang, Junyu Zhang, Dandan Wu, Yanting Wu, Xinmei Liu, Yimin Zhu, Jian‐Zhong Sheng, Jiexue Pan, Li Jin, He‐Feng Huang
Software Mentions: 3
Published: about 5 years ago

10.7717/peerj.8907

Weighted gene correlation network analysis reveals novel biomarkers associated with mesenchymal stromal cell differentiation in early phase
Cited by: 9
Author(s): Bin Xiao, Guozhu Wang, Weiwei Li
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.7441

Identification of pivotal lncRNAs in papillary thyroid cancer using lncRNA–mRNA–miRNA ceRNA network analysis
Cited by: 16
Author(s): Weiwei Liang, Fangfang Sun
Software Mentions: 3
Published: almost 7 years ago

10.18632/aging.202370

Identification of candidate genes encoding tumor-specific neoantigens in early- and late-stage colon adenocarcinoma
Cited by: 3
Author(s): Chong Wang, Wenhua Xue, Haohao Zhang, Yang Fu
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-015-1972-8

Additive transcriptomic variation associated with reproductive traits suggest local adaptation in a recently settled population of the Pacific oyster, Crassostrea gigas
Cited by: 14
Author(s): Rossana Sussarellu, Arnaud Huvet, Sylvie Lapègue, Virgile Quillen, Christophe Lelong, Florence Cornette, Lasse Fast Jensen, Nicolas Bierne, Pierre Boudry
Software Mentions: 3
Published: almost 11 years ago

10.3389/fcell.2021.703629

N6-Methylandenosine-Related lncRNA Signature Is a Novel Biomarkers of Prognosis and Immune Response in Colon Adenocarcinoma Patients
Cited by: 14
Author(s): Peiling Zhang, Guolong Liu, Lin Lü
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-021-08319-0

Identification of 4-genes model in papillary renal cell tumor microenvironment based on comprehensive analysis
Cited by: 4
Author(s): Lun Luo, Haiyi Zhou, Hao Su
Software Mentions: 3
Published: over 5 years ago

10.1038/s41419-021-04107-7

PPFIBP1 induces glioma cell migration and invasion through FAK/Src/JNK signaling pathway
Cited by: 16
Author(s): Caihua Dong, Xinying Li, Yang Jiao, Detian Yuan, Yuanshuai Zhou, Yina Zhang, Guohua Shi, Ruobing Zhang, Jianping Liu, Peng Fu, Minxuan Sun
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-019-6470-y

Gene signature characteristic of elevated stromal infiltration and activation is associated with increased risk of hematogenous and lymphatic metastasis in serous ovarian cancer
Cited by: 36
Author(s): Huiran Yue, Jieyu Wang, Ruifang Chen, Xiaoman Hou, Jun Li, Xin Lu
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12885-020-07216-2

Comprehensive analysis of prognostic tumor microenvironment-related genes in osteosarcoma patients
Cited by: 19
Author(s): Chuan Hu, Chuan Liu, Shaoqi Tian, Yuanhe Wang, Rui Shen, Huili Rao, Jianyi Li, Yu Xu, Bo Chen, Ye Lin
Software Mentions: 3
Published: about 6 years ago

10.1186/1471-2407-10-126

The RNA binding protein HuR differentially regulates unique subsets of mRNAs in estrogen receptor negative and estrogen receptor positive breast cancer
Cited by: 54
Author(s): Robert Calaluce, Matthew M. Gubin, J. Wade Davis, Joseph Magee, Jing Chen, Yuki Kuwano, Myriam Gorospe, Ulus Atasoy
Software Mentions: 3
Published: over 16 years ago

10.1038/s41598-018-33897-8

Population genomics of parallel evolution in gene expression and gene sequence during ecological adaptation
Cited by: 13
Author(s): Mercedes Rivas, María Saura, Andrés Pérez‐Figueroa, Marina Panova, Tomas Johansson, Carl André, Armando Caballero, Emilio Rolán‐Alvarez, Kerstin Johannesson, Humberto Quesada
Software Mentions: 3
Published: almost 8 years ago

10.3389/fbioe.2020.611701

Efficient Production of Pyruvate Using Metabolically Engineered Lactococcus lactis
Cited by: 5
Author(s): Fan Suo, Jianming Liu, Jun Chen, Xuanji Li, Peter Ruhdal Jensen
Software Mentions: 3
Published: over 5 years ago

10.1186/s12935-021-01982-0

Identification of collagen genes related to immune infiltration and epithelial-mesenchymal transition in glioma
Cited by: 25
Author(s): Yin Wu, Hecheng Zhu, Jun Tan, Zhaoqi Xin, Quanwei Zhou, Yudong Cao, Zhaoping Wu, Lei Wang, Ming Zhao, Xingjun Jiang, Chao Ren, Guihua Tang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-020-07628-0

Analyses of metastasis-associated genes in IDH wild-type glioma
Cited by: 4
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.7534

CeRNA network analysis and functional enrichment of salt sensitivity of blood pressure by weighted-gene co-expression analysis
Cited by: 3
Author(s): Han Cao, Qin Han, Zheng Liu, Wei Peng, Chunyue Guo, Yanyan Sun, Christine Pao, Yu Tao Xiang, Ling Zhang
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-018-34191-3

Transcriptome analysis of extended-spectrum β-lactamase-producing Escherichia coli and methicillin-resistant Staphylococcus aureus exposed to cefotaxime
Cited by: 12
Author(s): P. R. Brochmann, Andrew Hesketh, Bimal Jana, G. H. Brodersen, Luca Guardabassi
Software Mentions: 3
Published: almost 8 years ago

10.3389/fnbeh.2014.00110

Medial prefrontal cortex: genes linked to bipolar disorder and schizophrenia have altered expression in the highly social maternal phenotype
Cited by: 21
Author(s): Brian E. Eisinger, Terri M. Driessen, Changjiu Zhao, Stephen C. Gammie
Software Mentions: 3
Published: over 12 years ago

10.1038/s41419-021-03932-0

An integrative transcriptome study reveals Ddit4/Redd1 as a key regulator of cancer cachexia in rodent models
Cited by: 14
Author(s): Mengyuan Niu, Li Li, Zhonglan Su, Lulu Wei, Wenyuan Pu, Chen Zhao, Yibing Ding, Junaid Wazir, Wangsen Cao, Shiyu Song, Qian Gao, Hongwei Wang
Software Mentions: 3
Published: about 5 years ago

10.3389/fnbeh.2014.00388

Addiction and reward-related genes show altered expression in the postpartum nucleus accumbens
Cited by: 31
Author(s): Changjiu Zhao, Brian E. Eisinger, Terri M. Driessen, Stephen C. Gammie
Software Mentions: 3
Published: almost 12 years ago

10.1038/s41419-020-03181-7

Calcium and TRPV4 promote metastasis by regulating cytoskeleton through the RhoA/ROCK1 pathway in endometrial cancer
Cited by: 53
Author(s): Xingchen Li, Yuan Cheng, Zhiqi Wang, Jingyi Zhou, Yuanyuan Jia, Xijing He, Lijun Zhao, Yangyang Dong, Fan Yuan, Xiao Yang, Boqiang Shen, Xiangsong Wu, Jiaqi Wang, Chunyang Xiong, Lihui Wei
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41419-018-0865-6

A patient-derived xenograft pre-clinical trial reveals treatment responses and a resistance mechanism to karonudib in metastatic melanoma
Cited by: 35
Author(s): Berglind O. Einarsdottir, Jan Ch Karlsson, Elin Söderberg, Mattias F. Lindberg, Elisa Funck‐Brentano, Henrik Jespersen, Siggeir F. Brynjólfsson, Roger Olofsson Bagge, Louise Carstam, Martin Scobie, Tobias Koolmeister, Olov Wallner, Ulrika Stierner, Ulrika Warpman Berglund, Lars Ny, Lisa M. Nilsson, Erik Larsson, Thomas Helleday, Jonas A. Nilsson
Software Mentions: 3
Published: about 8 years ago

10.1186/1471-2164-11-28

Regional regulation of transcription in the chicken genome
Cited by: 8
Author(s): Haisheng Nie, R.P.M.A. Crooijmans, J.W.M. Bastiaansen, Hendrik‐Jan Megens, Martien A. M. Groenen
Software Mentions: 3
Published: over 16 years ago

10.1186/s12885-021-08456-6

Elevated TYROBP expression predicts poor prognosis and high tumor immune infiltration in patients with low-grade glioma
Cited by: 20
Author(s): Jiajie Lu, Yün Peng, Rihong Huang, Zejia Feng, Yongyang Fan, Haojian Wang, Zhiyong Zeng, Yunxiang Ji, Yezhong Wang, Zhaotao Wang
Software Mentions: 3
Published: about 5 years ago

10.1002/2211-5463.13093

Hypermethylation of the <i>PZP</i> gene is associated with hepatocellular carcinoma cell proliferation, invasion and migration
Cited by: 8
Author(s): Ming‐Chi Wu, Hui Y. Lan, Zhongwei Ye, Yonghui Wang
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-33807-y

Characterization of the miRNA regulators of the human ovulatory cascade
Cited by: 23
Author(s): Gil M. Yerushalmi, Mali Salmon‐Divon, Libby Ophir, Yuval Yung, Micha Baum, Giovanni Coticchio, Rubens Fadini, Mario Mignini-Renzini, Mariabeatrice Dal Canto, Ronit Machtinger, Ettie Maman, Ariel Hourvitz
Software Mentions: 3
Published: almost 8 years ago

10.7717/peerj.9453

Microenvironment-related gene TNFSF13B predicts poor prognosis in kidney renal clear cell carcinoma
Cited by: 5
Author(s): Mingzhe Jiang, Jiaxing Lin, Haotian Xing, Jing An, Jieping Yang, Biao Wang, Meng Yu, Yuyan Zhu
Software Mentions: 3
Published: about 6 years ago

10.1002/2211-5463.12181

The gene expression of numerous SLC transporters is altered in the immortalized hypothalamic cell line N25/2 following amino acid starvation
Cited by: 19
Author(s): Sofie V. Hellsten, Emilia Lekholm, Tauseef Ahmad, Robert Fredriksson
Software Mentions: 3
Published: over 9 years ago

10.1016/j.isci.2021.102722

Stratification of patients with clear cell renal cell carcinoma to facilitate drug repositioning
Cited by: 8
Author(s): Xiangyu Li, Woonghee Kim, Kajetan Juszczak, Muhammad Arif, Yusuke Sato, Haruki Kume, Seishi Ogawa, Hasan Türkez, Jan Borén, Jens Nielsen, Mathias Uhlén, Cheng Cheng Zhang, Adil Mardinoğlu
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-017-3816-1

Integrating transcriptomics and metabolomics for the analysis of the aroma profiles of Saccharomyces cerevisiae strains from diverse origins
Cited by: 30
Author(s): Inês Mendes, Isabelle Sanchez, Ricardo Franco-Duarte, Carole Camarasa, Dorit Elisabeth Schuller, Sylvie Dequin, Maria João Sousa
Software Mentions: 3
Published: over 9 years ago

10.1002/2211-5463.12759

Delivery of platelet <i>TPM3</i> mRNA into breast cancer cells via microvesicles enhances metastasis
Cited by: 29
Author(s): Bing Yao, Shuang Qu, Ruifeng Hu, Wen Gao, Shidai Jin, Junyi Ju, Quan Zhao
Software Mentions: 3
Published: almost 7 years ago

10.1002/2211-5463.12897

A digital mRNA expression signature to classify challenging Spitzoid melanocytic neoplasms
Cited by: 1
Author(s): Lisa M. Hillen, Milan S. Geybels, Ivelina Spassova, Juergen C. Becker, Thilo Gambichler, Marjan Garmyn, Axel zur Hausen, Joost van den Oord, Véronique Winnepenninckx
Software Mentions: 3
Published: over 6 years ago

10.1096/fj.201902664

The TGF‐b/SOX4 axis and ROS‐driven autophagy co‐mediate CD39 expression in regulatory T‐cells
Cited by: 24
Author(s): Marlene C. Gerner, Liesa S. Ziegler, Ralf Schmidt, Martin Krenn, Fritz Zimprich, Keziban Uyanik‐Ünal, Vassiliki Konstantopoulou, Sophia Derdak, Giorgia Del Favero, Ilse Schwarzinger, Kaan Boztuğ, Klaus G. Schmetterer
Software Mentions: 3
Published: over 6 years ago

10.1186/s12885-021-08687-7

A novel survival model based on a Ferroptosis-related gene signature for predicting overall survival in bladder cancer
Cited by: 22
Author(s): Yingchun Liang, Fangdie Ye, Chenyang Xu, Lina Zou, Yun Hu, Jimeng Hu, Haowen Jiang
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-021-08634-6

Overexpression of UBE2C in esophageal squamous cell carcinoma tissues and molecular analysis
Cited by: 6
Author(s): Rong Li, Xing-Feng Pang, Zhi‐Guang Huang, Lihua Yang, Zhigang Peng, Jie Ma, Rong‐Quan He
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-021-08203-x

A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer
Cited by: 5
Author(s): Xin Zhong, Feichao Xuan, Yun Qian, Junhai Pan, Suihan Wang, Wenchao Chen, Tianyu Lin, Hepan Zhu, Xianfa Wang, Guanyu Wang
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.10171

Identification of key genes and pathways in endometriosis by integrated expression profiles analysis
Cited by: 6
Author(s): Ding Cui, Yang Liu, Junyan Ma, Kejian Lin, Kang Xu, Jizhen Lin
Software Mentions: 3
Published: almost 6 years ago

10.1186/1471-2229-13-147

Grafting with rootstocks induces extensive transcriptional re-programming in the shoot apical meristem of grapevine
Cited by: 79
Author(s): Sarah Jane Cookson, Nathalie Ollat
Software Mentions: 3
Published: over 13 years ago

10.1186/1471-2407-11-450

Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa
Cited by: 30
Author(s): Stefan Enroth, Alvaro Rada-Iglesisas, Robin Andersson, Ola Wallerman, Alkwin Wanders, Lars Påhlman, Jan Komorowski, Claes Wadelius
Software Mentions: 3
Published: almost 15 years ago

10.1186/s12935-021-02096-3

A novel signature constructed by ferroptosis-associated genes (FAGs) for the prediction of prognosis in bladder urothelial carcinoma (BLCA) and associated with immune infiltration
Cited by: 15
Author(s): Jiaochen Luan, Taidui Zeng, Qijie Zhang, Derun Xia, Rong Cong, Liangyu Yao, Lebin Song, Xiang Zhou, Xuan Zhou, Xiang Chen, Jun Xia, Ninghong Song
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-021-08550-9

Quantification of m6A RNA methylation modulators pattern was a potential biomarker for prognosis and associated with tumor immune microenvironment of pancreatic adenocarcinoma
Cited by: 30
Author(s): Lianzi Wang, Shubing Zhang, Huimin Li, Yang Xu, Qiang Wu, Jilong Shen, Tao Li, Yuanhong Xu
Software Mentions: 3
Published: about 5 years ago

10.1038/celldisc.2015.35

Discovery of a highly potent glucocorticoid for asthma treatment
Cited by: 8
Author(s): Yuanzheng He, Jingjing Shi, Wei Yi, Xin Ren, Xiang Gao, Jianshuang Li, Nanyan Wu, Kevin Weaver, Qian Xie, Sok Kean Khoo, Tao Yang, Xiaozhu Huang, Karsten Melcher, H. Eric Xu
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12864-017-3672-z

Transcriptome dynamics in early zebrafish embryogenesis determined by high-resolution time course analysis of 180 successive, individual zebrafish embryos
Cited by: 12
Author(s): Han Rauwerda, J.F.B. Pagano, Wim C. de Leeuw, Wim A. Ensink, Ulrike Nehrdich, Mark de Jong, Martijs J. Jonker, Herman P. Spaink, Timo M. Breit
Software Mentions: 3
Published: over 9 years ago

10.1155/2020/5943014

Bioinformatic Identification of Neuroblastoma Microenvironment-Associated Biomarkers with Prognostic Value
Cited by: 4
Author(s): Yi Wang, Huan Luo, Jing Cao, Chi Ma
Software Mentions: 3
Published: about 6 years ago

10.1186/s12885-020-07529-2

Increased E2F2 predicts poor prognosis in patients with HCC based on TCGA data
Cited by: 12
Author(s): Zhili Zeng, Zebiao Cao, Ying Tang
Software Mentions: 3
Published: almost 6 years ago

10.1186/1471-2407-13-585

The oncogenic properties of EWS/WT1 of desmoplastic small round cell tumors are unmasked by loss of p53 in murine embryonic fibroblasts
Cited by: 10
Author(s): Pratiti Bandopadhayay, Anissa Jabbour, Christopher D. Riffkin, Marika Salmanidis, Lavinia Gordon, Dean Popovski, Lin Rigby, David M. Ashley, D. Neil Watkins, David M. Thomas, Elizabeth Algar, Paul G. Ekert
Software Mentions: 3
Published: almost 13 years ago

10.1038/s41598-018-33478-9

A Comparative Assessment of Human and Chimpanzee iPSC-derived Cardiomyocytes with Primary Heart Tissues
Cited by: 54
Author(s): Bryan J. Pavlovic, Lauren E. Blake, Julien Roux, Claudia Chavarria, Yoav Gilad
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-016-2401-3

Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae
Cited by: 39
Author(s): José Díaz-Riquelme, Vladimir Zhurov, Cristina Rioja, Ignacio Pérez-Moreno, Rafael Torres‐Pérez, Jérôme Grimplet, Pablo Carbonell‐Bejerano, Sabina Bajda, Thomas Van Leeuwen, José M. Martínez‐Zapater, Miodrag Grbić, Vojislava Grbić
Software Mentions: 3
Published: over 10 years ago

10.1186/1471-2407-14-64

Concerted down-regulation of immune-system related genes predicts metastasis in colorectal carcinoma
Cited by: 21
Author(s): Marion Fehlker, Matthew R. Huska, Thomas Jöns, Miguel A. Andrade‐Navarro, Wolfgang Kemmner
Software Mentions: 3
Published: over 12 years ago

10.1186/s11658-018-0090-4

Essential genes of the macrophage response to Staphylococcus aureus exposure
Cited by: 6
Author(s): Aixia Sun, Hongwei Zhang, Feng Pang, Guifen Niu, Jianzhong Chen, Fei Chen, Jian Zhang
Software Mentions: 3
Published: over 8 years ago

10.1186/bcr1604

Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data
Cited by: 122
Author(s): Anita Grigoriadis, Alan Mackay, Jorge S. Reis‐Filho, Dawn Steele, Christian Iseli, Brian J. Stevenson, C. Victor Jongeneel, Haukur Valgeirsson, Kerry Fenwick, Marjan Iravani, Maria Ignêz Leão, Andrew J.G. Simpson, Robert L. Strausberg, Parmjit Jat, Alan Ashworth, A. Munro Neville, Michael J. O’Hare
Software Mentions: 3
Published: almost 20 years ago

10.1016/j.jcmgh.2021.05.020

Wilson Disease: Intersecting DNA Methylation and Histone Acetylation Regulation of Gene Expression in a Mouse Model of Hepatic Copper Accumulation
Cited by: 11
Author(s): Gaurav V. Sarode, Kari Neier, Noreene M. Shibata, Yuanjun Shen, Dmitry A. Goncharov, Elena A. Goncharova, Tagreed A. Mazi, Nikhil Joshi, Matthew L. Settles, Janine M. LaSalle, Valentina Medici
Software Mentions: 3
Published: over 5 years ago

10.12688/f1000research.7302.1

Integrated analysis of oral tongue squamous cell carcinoma identifies key variants and pathways linked to risk habits, HPV, clinical parameters and tumor recurrence
Cited by: 21
Author(s): Neeraja M. Krishnan, Saurabh Gupta, Vinayak Palve, Linu Varghese, Swetansu Pattnaik, Promil Jain, Costerwell Khyriem, Arun K Hariharan, Kunal Dhas, Jayalakshmi Nair, Manisha Pareek, Venkatesh K Prasad, Gangotri Siddappa, Amritha Suresh, Vikram D. Kekatpure, Moni Abraham Kuriakose, Binay Panda
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12885-021-08318-1

Highly heterogeneous-related genes of triple-negative breast cancer: potential diagnostic and prognostic biomarkers
Cited by: 12
Author(s): Yiduo Liu, Linxin Teng, Shiyi Fu, Guiyang Wang, Zhengjun Li, Chao Ding, Haodi Wang, Lei Bi
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-33272-7

Increased levels of circulating MMP3 correlate with severe rejection in face transplantation
Cited by: 18
Author(s): Branislav Kollar, Andrey V. Shubin, Thiago J. Borges, Sotirios Tasigiorgos, Thet Su Win, Christine G. Lian, Simon T. Dillon, Xuesong Gu, Iris Wyrobnik, Gëorge F. Murphy, Bohdan Pomahac, Towia A. Libermann, Leonardo V. Riella
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12885-021-08331-4

Hsa_circ_0000301 facilitates the progression of cervical cancer by targeting miR-1228-3p/IRF4 Axis
Cited by: 9
Author(s): Zhanfeng Deng, Fangfang Dai, Quan Zhou, Yanxiang Cheng
Software Mentions: 3
Published: over 5 years ago

10.1186/s40164-021-00220-7

Exosomes from BM-MSCs promote acute myeloid leukemia cell proliferation, invasion and chemoresistance via upregulation of S100A4
Cited by: 25
Author(s): Tianxin Lyu, Yinuo Wang, Li Ding, Hui Yang, Bin Qin, Wenli Zhang, Zhiyue Li, Cheng Cheng, Binglei Zhang, Rong Guo, Yongping Song
Software Mentions: 3
Published: over 5 years ago

10.1186/s12870-019-2169-0

Differential gene expression among three sex types reveals a MALE STERILITY 1 (CpMS1) for sex differentiation in papaya
Cited by: 11
Author(s): Dessireé Zerpa‐Catanho, Jennifer Wai, Ming Li Wang, Liang Yu, Julie Nguyen, Ray Ming
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-32579-9

ADIPOR1 is essential for vision and its RPE expression is lost in the Mfrprd6 mouse
Cited by: 32
Author(s): Valentin M. Sluch, Angela Banks, Hui Li, Maura Crowley, Vanessa Davis, Chuanxi Xiang, Junzheng Yang, John Demirs, Joanna Vrouvlianis, Barrett Leehy, Shawn Hanks, Alexandra M. Hyman, Jorge Aranda, Bo Chang, Chad E. Bigelow, Dennis S. Rice
Software Mentions: 3
Published: almost 8 years ago

10.1016/j.exphem.2020.10.002

HOXA9/IRX1 expression pattern defines two subgroups of infant MLL-AF4-driven acute lymphoblastic leukemia
Cited by: 8
Author(s): Vasiliki Symeonidou, Katrin Ottersbach
Software Mentions: 3
Published: over 5 years ago

10.1007/s00018-016-2401-0

Multi-OMIC profiling of survival and metabolic signaling networks in cells subjected to photodynamic therapy
Cited by: 24
Author(s): Ruud Weijer, Séverine Clavier, Esther A. Zaal, Maud M. E. Pijls, Robert T. van Kooten, Klaas Vermaas, René Leen, Aldo Jongejan, Perry D. Moerland, Antoine H. C. van Kampen, André B. P. Kuilenburg, Celia R. Berkers, Simone Lemeer, Michal Heger
Software Mentions: 3
Published: almost 10 years ago

10.1186/s12935-020-01398-2

Identification of a three-miRNA signature as a novel prognostic model for papillary renal cell carcinoma
Cited by: 2
Author(s): Ge Li, Hongbo Yang, Yong Cheng, Xin Zhao, Xu Li, Rui Jiang
Software Mentions: 3
Published: about 6 years ago

10.1111/cpr.12988

Circadian clock genes promote glioma progression by affecting tumour immune infiltration and tumour cell proliferation
Cited by: 47
Author(s): Zeyu Wang, Guan-Hua Su, Ziyu Dai, Ming Meng, Hao Zhang, Fan Fan, Zhengzheng Liu, Longbo Zhang, Nathaniel Weygant, Fengjiao He, Ning Fang, Jintao Zhang, Quan Cheng
Software Mentions: 3
Published: over 5 years ago

10.1186/s12870-020-2260-6

Transcriptomic study of pedicels from GA3-treated table grape genotypes with different susceptibility to berry drop reveals responses elicited in cell wall yield, primary growth and phenylpropanoids synthesis
Cited by: 6
Author(s): Marco Meneses, Miguel García-Rojas, Claudia Muñoz-Espinoza, Tomás Carrasco-Valenzuela, Bruno G. Defilippi, Mauricio González-Agüero, Claudio Meneses, Rodrigo Infante, Patricio Hinrichsen
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-32549-1

Integrative metabolic and transcriptomic profiling of prostate cancer tissue containing reactive stroma
Cited by: 45
Author(s): Maria Andersen, Kjersti Rise, Guro F. Giskeødegård, Elin Richardsen, Helena Bertilsson, Øystein Størkersen, Tone Frost Bathen, Morten Rye, May‐Britt Tessem
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12886-020-01365-5

Identification of lncRNA–miRNA–mRNA regulatory network associated with primary open angle glaucoma
Cited by: 24
Author(s): Minwen Zhou, Bing Lu, Wei Tan, Mingshui Fu
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2202-15-11

Genes showing altered expression in the medial preoptic area in the highly social maternal phenotype are related to autism and other disorders with social deficits
Cited by: 33
Author(s): Terri M. Driessen, Brian E. Eisinger, Changjiu Zhao, Sharon A. Stevenson, Michael C. Saul, Stephen C. Gammie
Software Mentions: 3
Published: over 12 years ago

10.18632/aging.103811

A newly defined risk signature, consisting of three m6A RNA methylation regulators, predicts the prognosis of ovarian cancer
Cited by: 25
Author(s): Lili Fan, Yu Lin, Lei Han, Guang Shu, Lingyun He, Zhipeng Yan, Rihan Hai, Gang Yin
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12885-021-08229-1

Identification of NTRK3 as a potential prognostic biomarker associated with tumor mutation burden and immune infiltration in bladder cancer
Cited by: 13
Author(s): Zhao Zhang, Yizhi Yu, Pengfei Zhang, Guofeng Ma, Mingxin Zhang, Ye Liang, Wei Jiao, Haitao Niu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-31132-y

RNA-Seq Analysis of Spinal Cord Tissues from hPFN1G118V Transgenic Mouse Model of ALS at Pre-symptomatic and End-Stages of Disease
Cited by: 11
Author(s): Caroline Barham, Daniel Fil, Stephanie D. Byrum, Yasir Rahmatallah, Galina Glazko, Mahmoud Kiaei
Software Mentions: 3
Published: about 8 years ago

10.1242/dmm.010975

Long-lasting alterations to DNA methylation and ncRNAs could underlie the effects of fetal alcohol exposure in mice
Cited by: 105
Author(s): Benjamin I. Laufer, Katarzyna Mantha, Morgan L. Kleiber, Eric J. Diehl, Sean M. F. Addison, Shiva M. Singh
Software Mentions: 3
Published: over 13 years ago

10.1523/ENEURO.0287-18.2018

Overweight Mice Show Coordinated Homeostatic and Hedonic Transcriptional Response across Brain
Cited by: 0
Author(s): Ilario De Toma, Ilona Grabowicz, Marta Fructuoso, Daniel Trujillano, Bartek Wilczyński, Mara Dierssen
Software Mentions: 3
Published: almost 8 years ago

10.7717/peerj.3575

Identification of four prognostic LncRNAs for survival prediction of patients with hepatocellular carcinoma
Cited by: 44
Author(s): Zhonghao Wang, Qian Wu, Shu Feng, Yanhua Zhao, Chuanmin Tao
Software Mentions: 3
Published: about 9 years ago

10.1186/1471-230X-10-60

The Role of T cell PPAR γ in mice with experimental inflammatory bowel disease
Cited by: 68
Author(s): Amir J. Guri, Saroj Kant Mohapatra, William Horne, Raquel Hontecillas, Josep Bassaganya‐Riera
Software Mentions: 3
Published: over 16 years ago

10.1186/s12891-021-04662-2

Dysregulation of ribosome-related genes in ankylosing spondylitis: a systems biology approach and experimental method
Cited by: 3
Author(s): Arezou Lari, Hamid Gholami Pourbadie, Ali Sharifi‐Zarchi, Maryam Akhtari, Leila Nejatbakhsh Samimi, Ahmadreza Jamshidi, Mahdi Mahmoudi
Software Mentions: 3
Published: about 5 years ago

10.1155/2021/8849977

A Risk Signature with Autophagy-Related Long Noncoding RNAs for Predicting the Prognosis of Clear Cell Renal Cell Carcinoma: Based on the TCGA Database and Bioinformatics
Cited by: 14
Author(s): Yundong Xuan, Wei-Hao Chen, Kan Liu, Yu Tang Gao, Shidong Zuo, Baojun Wang, Xin Ma, Xu Zhang
Software Mentions: 3
Published: over 5 years ago

10.1155/2021/8839747

A 5-lncRNA Signature Associated with Smoking Predicts the Overall Survival of Patients with Muscle-Invasive Bladder Cancer
Cited by: 2
Author(s): Haoyue Sheng, Guiming Zhang, Yao Qi Huang, Lili Sun, Guohai Shi, Dingwei Ye
Software Mentions: 3
Published: over 5 years ago

10.1186/s12891-021-03958-7

HEMGN and SLC2A1 might be potential diagnostic biomarkers of steroid-induced osteonecrosis of femoral head: study based on WGCNA and DEGs screening
Cited by: 10
Author(s): Zhixin Wu, Yinxian Wen, Guanlan Fan, Hangyuan He, Siqi Zhou, Liaobin Chen
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-020-07393-0

HLA-DPA1 gene is a potential predictor with prognostic values in multiple myeloma
Cited by: 11
Author(s): Jie Yang, Fei Wang, Baoan Chen
Software Mentions: 3
Published: almost 6 years ago

10.1155/2021/8886897

Integrated Analysis of lncRNA-Associated ceRNA Network Identifies Two lncRNA Signatures as a Prognostic Biomarker in Gastric Cancer
Cited by: 7
Author(s): Shuyan Zhang, Shanshan Li, Jiuxin Guo, Ningyi Li, Caining Zhang, Jie Liu
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12935-021-01867-2

Identification of a tumor microenvironment-related gene signature to improve the prediction of cervical cancer prognosis
Cited by: 9
Author(s): Qian Chen, Bingqing Qiu, Xianmin Zeng, Lang Hu, Dongping Huang, Kaihua Chen, Xiaoqiang Qiu
Software Mentions: 3
Published: over 5 years ago

10.1155/2021/5033416

A Novel Expression Signature from the Perspective of Mesenchymal-Epithelial Transition for Hepatocellular Carcinoma with Regard to Prognosis, Clinicopathological Features, Immune Cell Infiltration, Chemotherapeutic Efficacy, and Immunosuppressive Molecules
Cited by: 3
Author(s): Li Xu, Qing Zheng
Software Mentions: 3
Published: about 5 years ago

10.1016/j.celrep.2020.108533

USP15 Deubiquitinase Safeguards Hematopoiesis and Genome Integrity in Hematopoietic Stem Cells and Leukemia Cells
Cited by: 10
Author(s): Paul van den Berk, Cesare Lancini, Michela Serresi, María Pilar Sánchez-Bailón, Danielle Hulsman, Colin C. Pritchard, Ji‐Ying Song, Matthias Jürgen Schmitt, Ellen Tanger, Oliver Popp, Philipp Mertins, Ivo J. Huijbers, Heinz Jacobs, Maarten van Lohuizen, Gaetano Gargiulo, Elisabetta Citterio
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12935-019-0859-1

Eleven genes associated with progression and prognosis of endometrial cancer (EC) identified by comprehensive bioinformatics analysis
Cited by: 54
Author(s): Jinhui Liu, Shulin Zhou, Siyue Li, Yi Jiang, Yicong Wan, Xiaoling Ma, Wenjun Cheng
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2164-14-514

Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data
Cited by: 15
Author(s): Leandro Hermida, Carine Poussin, Michael Stadler, Sylvain Gubian, Alain Sewer, Dimos Gaidatzis, Hans-Rudolf Hotz, Florian Martin, Vincenzo Belcastro, Stéphane Cano, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 3
Published: over 13 years ago

10.1155/2020/8867019

Development of an Autophagy Score Signature for Predicting Overall Survival in Papillary Renal Cell Carcinoma
Cited by: 2
Author(s): Xiang Gu, Xiaojun Chen, Lei Zhu, Wenbo Song, Ali Wang, Junfeng Chu, Tao Wang, Peng Jiang, Yuxiang Ge
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12885-015-1994-2

Low-power photodynamic therapy induces survival signaling in perihilar cholangiocarcinoma cells
Cited by: 28
Author(s): Ruud Weijer, Mans Broekgaarden, Rowan F. van Golen, Esther Bulle, E. E. S. Nieuwenhuis, Aldo Jongejan, Perry D. Moerland, Antoine H. C. van Kampen, Thomas M. van Gulik, Michal Heger
Software Mentions: 3
Published: almost 11 years ago

10.1016/j.celrep.2019.04.076

Integrin-Mediated Macrophage Adhesion Promotes Lymphovascular Dissemination in Breast Cancer
Cited by: 38
Author(s): Rachel Evans, Fabián Flores-Borja, Sina Nassiri, Elena Miranda, Katherine Lawler, Anita Grigoriadis, James Monypenny, Cheryl Gillet, Julie Owen, Peter M. Gordon, Victoria Male, Anthony Cheung, Farzana Noor, Paul R. Barber, Rebecca Marlow, Erika Francesch-Domenech, Gilbert O. Fruhwirth, Mario Leonardo Squadrito, Borivoj Vojnovic, Andrew Tutt, Frederic Festy, Michele De Palma, Tony Ng
Software Mentions: 3
Published: over 7 years ago

10.3390/diagnostics10090689

The Prognostic Significance of Immune-Related Metabolic Enzyme MTHFD2 in Head and Neck Squamous Cell Carcinoma
Cited by: 7
Author(s): Li Cui, Huan Chen, Xinyuan Zhao
Software Mentions: 3
Published: about 6 years ago

10.1186/s12860-020-00331-9

Transcriptome and proteome profiling reveal complementary scavenger and immune features of rat liver sinusoidal endothelial cells and liver macrophages
Cited by: 18
Author(s): Sabin Bhandari, Ruomei Li, Jaione Simón-Santamaría, Peter McCourt, Steinar Johansen, Bård Smedsrød, Iñigo Martínez-Zubiaurre, Karen Kristine Sørensen
Software Mentions: 3
Published: almost 6 years ago

10.1186/1475-2867-9-12

Gene expression profiling predicts a three-gene expression signature of endometrial adenocarcinoma in a rat model
Cited by: 9
Author(s): Sandra Karlsson, Björn Olsson, Karin Klinga‐Levan
Software Mentions: 3
Published: over 17 years ago

10.1038/s41598-018-29496-2

Subtle left-right asymmetry of gene expression profiles in embryonic and foetal human brains
Cited by: 47
Author(s): Carolien G.F. de Kovel, Steven Lisgo, Simon E. Fisher, Clyde Francks
Software Mentions: 3
Published: about 8 years ago

10.1186/s13000-014-0210-z

Unveiling transcription factor regulation and differential co-expression genes in Duchenne muscular dystrophy
Cited by: 7
Author(s): Lijun Tian, Junhua Cao, Xingqiang Deng, Chuanling Zhang, Tong Qian, Xianxiang Song, Baoshan Huang
Software Mentions: 3
Published: almost 12 years ago

10.1186/s12885-019-5983-8

Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in squamous cell carcinoma of tongue
Cited by: 208
Author(s): Ruisheng Zhou, Enxin Zhang, Sun Qi-zhong, Zeng Jie Ye, Jianwei Liu, Dajun Zhou, Ying Tang
Software Mentions: 3
Published: about 7 years ago

10.1038/s41422-019-0224-x

Sustained Type I interferon signaling as a mechanism of resistance to PD-1 blockade
Cited by: 148
Author(s): Nicolas Jacquelot, Takahiro Yamazaki, María Paula Roberti, Connie P.M. Duong, Miles C. Andrews, Loïc Verlingue, Gladys Ferrere, Sonia Becharef, Marie Vétizou, Romain Daillère, Meriem Messaoudene, David Enot, Gautier Stoll, Stefano Ugel, Ilaria Marigo, Shin Foong Ngiow, Aurélien Marabelle, Armelle Prévost-Blondel, Pierre Olivier Gaudreau, Vancheswaran Gopalakrishnan, Alexander M.M. Eggermont, Paule Opolon, Christophe Klein, Gabriele Madonna, Paolo A. Ascierto, Antje Sucker, Dirk Schadendorf, Mark J. Smyth, Jean Charles Soria, Guido Kroemer, Vincenzo Bronte, Jennifer A. Wargo, Laurence Zitvogel
Software Mentions: 3
Published: about 7 years ago