bioconductor: goseq | Projects | Ecosyste.ms: Papers

10.3389/fimmu.2019.01769

Mechanisms Underlying the Functional Cooperation Between PPARα and GRα to Attenuate Inflammatory Responses
Cited by: 11
Author(s): Nadia Bougarne, Viacheslav Mylka, Dariusz Ratman, Ilse Beck, Jonathan Thommis, Lode De Cauwer, Jan Tavernier, Bart Staels, Claude Libert, Karolien De Bosscher
Software Mentions: 2
Published: about 5 years ago

10.3390/plants9101335

Identification of Candidate Genes Involved in Fruit Ripening and Crispness Retention Through Transcriptome Analyses of a ‘Honeycrisp’ Population
Cited by: 11
Author(s): Hsueh Yuan Chang, Cindy B. S. Tong
Software Mentions: 2
Published: almost 4 years ago

10.3389/fpls.2016.00371

Transcriptomic Changes Drive Physiological Responses to Progressive Drought Stress and Rehydration in Tomato
Cited by: 85
Author(s): Paolo Iovieno, Paola Punzo, Gianpiero Guida, Carmela Mistretta, Michael James Van Oosten, Roberta Nurcato, Hamed Bostan, Chiara Colantuono, Antonello Costa, Paolo Bagnaresi, Maria Luisa Chiusano, Rossella Albrizio, P. Giorio, Giorgia Batelli, Stefania Grillo
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.118.200920

Transcriptional Basis of Copper-Induced Olfactory Impairment in the Sea Lamprey, a Primitive Invasive Fish
Cited by: 7
Author(s): Jenna Jones, Kyle Wellband, Barbara S. Zielinski, Daniel D. Heath
Software Mentions: 2
Published: over 5 years ago

10.3390/genes11050540

Genome-Wide Transcriptome and Metabolome Analyses Provide Novel Insights and Suggest a Sex-Specific Response to Heat Stress in Pigs
Cited by: 8
Author(s): Krishnamoorthy Srikanth, Woncheoul Park, Sang Yun Ji, Ki‐Hyun Kim, Yoo Kyung Lee, Minji Kim, Youl Chang Baek, Hana Kim, Gul Won Jang, Bong-Hwan Choi, Sung Dae Lee
Software Mentions: 2
Published: over 4 years ago

10.3390/plants10010172

Transcriptome Profiling of the Potato Exposed to French Marigold Essential Oil with a Special Emphasis on Leaf Starch Metabolism and Defense against Colorado Potato Beetle
Cited by: 2
Author(s): Sofija Stupar, Milan Dragićević, Vele Tešević, Jovana Stanković Jeremić, Vuk Maksimović, Tatjana Ćosić, Nina Devrnja, Ljiljana Tubić, Aleksandar Cingel, Branka Vinterhalter, Slavica Ninković, Jelena Savić
Software Mentions: 2
Published: over 3 years ago

10.1007/s11418-018-1270-2

Identification of potential genes involved in triterpenoid saponins biosynthesis in Gleditsia sinensis by transcriptome and metabolome analyses
Cited by: 11
Author(s): Yusuke Kuwahara, D. Nakajima, Sayaka Shinpo, Michimi Nakamura, Noriaki Kawano, Nobuo Kawahara, Mami Yamazaki, Kazuki Saito, Hideyuki Suzuki, Hideki Hirakawa
Software Mentions: 2
Published: almost 6 years ago

10.1007/s00299-021-02706-4

Multiple cellular compartments engagement in Nicotiana benthamiana-peanut stunt virus-satRNA interactions revealed by systems biology approach
Cited by: 3
Author(s): Barbara Wrzesińska, Agnieszka Żmieńko, Lam Dai Vu, Ive De Smet, Aleksandra Obrępalska‐Stęplowska
Software Mentions: 2
Published: over 3 years ago

10.3390/pathogens3040875

Comparison of Potato and Asian Citrus Psyllid Adult and Nymph Transcriptomes Identified Vector Transcripts with Potential Involvement in Circulative, Propagative Liberibacter Transmission
Cited by: 35
Author(s): Tonja W. Fisher, Meenal Vyas, Rong He, William M. Nelson, Joseph M. Cicero, Mark R. Willer, Ryan Kim, Robin Kramer, Greg A. May, John A. Crow, Carol Soderlund, David R. Gang, Judith K. Brown
Software Mentions: 2
Published: almost 10 years ago

10.1128/AEM.02294-17

Transcriptional Response to Lactic Acid Stress in the Hybrid Yeast Zygosaccharomyces parabailii
Cited by: 17
Author(s): Raúl A. Ortiz‐Merino, Nurzhan Kuanyshev, Kevin Byrne, Javier A. Varela, John P. Morrissey, Danilo Porro, Kenneth H. Wolfe, Paola Branduardi
Software Mentions: 2
Published: over 6 years ago

10.1098/rsob.180203

Embryonic stem cells become mechanoresponsive upon exit from ground state of pluripotency
Cited by: 16
Author(s): Christophe M. Verstreken, Céline Labouesse, Chibeza C. Agley, Kevin J. Chalut
Software Mentions: 2
Published: almost 6 years ago

10.1264/jsme2.ME20049

Mechanisms of Rice Endophytic Bradyrhizobial Cell Differentiation and Its Role in Nitrogen Fixation
Cited by: 3
Author(s): Teerana Greetatorn, Shun Hashimoto, Taro Maeda, Mitsutaka Fukudome, Pongdet Piromyou, Kamonluck Teamtisong, Panlada Tittabutr, Nantakorn Boonkerd, Masayoshi Kawaguchi, Toshiki Uchiumi, Neung Teaumroong
Software Mentions: 2
Published: almost 5 years ago

10.1038/srep28999

Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome
Cited by: 164
Author(s): Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair
Software Mentions: 2
Published: over 8 years ago

10.1038/srep39240

Gene expression in local stroma reflects breast tumor states and predicts patient outcome
Cited by: 11
Author(s): Russell Bainer, Casey Frankenberger, Daniel C. Rabe, Gary An, Yoav Gilad, Marsha Rich Rosner
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-29420-8

RNA-Seq reveals novel genes and pathways involved in bovine mammary involution during the dry period and under environmental heat stress
Cited by: 46
Author(s): Bethany Dado-Senn, Amy L. Skibiel, Thiago F. Fabris, Y. Zhang, Geoffrey E. Dahl, Francisco Peñagaricano, Jimena Laporta
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-29374-x

Cotton rat lung transcriptome reveals host immune response to Respiratory Syncytial Virus infection
Cited by: 10
Author(s): Seesandra V. Rajagopala, Harinder Singh, Manan S. Patel, Wei Wang, Yi Tan, Meghan H. Shilts, Tina V. Hartert, Marina S. Boukhvalova, Jorge C. G. Blanco, Suman Das
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-37977-7

Combined quantification of intracellular (phospho-)proteins and transcriptomics from fixed single cells
Cited by: 65
Author(s): Jan P. Gerlach, Jessie A.G.L. van Buggenum, Sabine E.J. Tanis, Mark Hogeweg, Branco M. H. Heuts, Mauro J. Muraro, Lisa Elze, Francesca Rivello, Agata Rakszewska, Alexander van Oudenaarden, Wilhelm T. S. Huck, Hendrik G. Stunnenberg, Klaas W. Mulder
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-12-514

Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid
Cited by: 180
Author(s): Diana V. Dugas, Marcela K. Monaco, Andrew Olson, Robert R. Klein, Sunita Kumari, Doreen Ware, Patricia E. Klein
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12864-021-07692-1

Transcriptome analysis reveals potential function of long non-coding RNAs in 20-hydroxyecdysone regulated autophagy in Bombyx mori
Cited by: 8
Author(s): Hui Qiao, Jingya Wang, Yuanzhuo Wang, Juanjuan Yang, Bofan Wei, Miaomiao Li, Bo Wang, Xiaozhe Li, Yang Cao, Ling Tian, Dandan Li, Lunguang Yao, Yunchao Kan
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-018-4576-2

Genome sequence of an aflatoxigenic pathogen of Argentinian peanut, Aspergillus arachidicola
Cited by: 9
Author(s): Geromy G. Moore, Brian M. Mack, Shannon B. Beltz, Olivier Puel
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-016-2706-2

RNA-seq analysis of virR and revR mutants of Clostridium perfringens
Cited by: 9
Author(s): Lee-Yean Low, Paul F. Harrison, Ya-Hsun Lin, John D. Boyce, Julian I. Rood, Jackie K. Cheung
Software Mentions: 2
Published: over 8 years ago

10.12688/f1000research.6402.2

The developmental transcriptome of contrasting Arctic charr (Salvelinus alpinus) morphs
Cited by: 11
Author(s): Jóhannes Guðbrandsson, Ehsan Pashay Ahi, Sigríður Rut Franzdóttir, Kalina H. Kapralova, Bjarni K. Kristjánsson, S. Sophie Steinhaeuser, Valerie H. Maier, Isak M. Johannesson, Sigurður S. Snorrason, Zophonı́as O. Jónsson, Arnar Pálsson
Software Mentions: 2
Published: over 8 years ago

10.1155/2016/2480298

Long-Term Oocyte-Like Cell Development in Cultures Derived from Neonatal Marmoset Monkey Ovary
Cited by: 9
Author(s): Bentolhoda Fereydouni, Gabriela Salinas-Riester, Michael Heistermann, Ralf Dressel, Lucia Lewerich, Charis Drummer, Rüdiger Behr
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0094555

Genetic Control of Differential Acetylation in Diabetic Rats
Cited by: 7
Author(s): Pamela J. Kaisaki, G. Otto, Joanna F. McGouran, Amine Toubal, Karène Argoud, Helen Waller-Evans, Clare Finlay, Sophie Caldérari, Marie-Thérèse Bihoreau, Benedikt M. Kessler, Dominique Guyader, Richard Mott
Software Mentions: 2
Published: over 10 years ago

10.1038/s42003-020-0758-y

Biotin proximity tagging favours unfolded proteins and enables the study of intrinsically disordered regions
Cited by: 23
Author(s): David-Paul Minde, Manasa Ramakrishna, Kathryn S. Lilley
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers12051281

Tetraploidization of Immortalized Myoblasts Induced by Cell Fusion Drives Myogenic Sarcoma Development with DMD Deletion
Cited by: 4
Author(s): Candice Merle, Noémie Thébault, Sophie Leguellec, Jessica Baud, Gaëlle Pérot, Tom Lesluyes, Lucile Delespaul, Lydia Lartigue, Frédéric Chibon
Software Mentions: 1
Published: over 4 years ago

10.1016/j.stem.2019.08.015

Metformin Restores CNS Remyelination Capacity by Rejuvenating Aged Stem Cells
Cited by: 223
Author(s): Björn Neumann, Roey Baror, Chao Zhao, Michael J. Segel, Sabine Dietmann, Khalil S. Rawji, Sarah Foerster, Crystal R. McClain, Kevin J. Chalut, Peter van Wijngaarden, R. J. M. Franklin
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-81832-1

Development and characterization of patient-derived xenografts from non-small cell lung cancer brain metastases
Cited by: 8
Author(s): Andrew M. Baschnagel, Saakshi Kaushik, Arda Durmaz, Steve Goldstein, Irene M. Ong, Lindsey Abel, Paul A. Clark, Zafer Gurel, Ticiana Leal, Darya Buehler, Gopal Iyer, Jacob G. Scott, Randall J. Kimple
Software Mentions: 1
Published: over 3 years ago

10.1136/annrheumdis-2020-218344

OATargets: a knowledge base of genes associated with osteoarthritis joint damage in animals
Cited by: 19
Author(s): Jamie Soul, M.J. Barter, Christopher B. Little, David A. Young
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13073-015-0153-3

Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis
Cited by: 222
Author(s): Susan Yost, Ana E. Duran-Pinedo, Ricardo Teles, K. V. Krishnan, Jorge Frias-Lopez
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1004365

Deep Evolutionary Comparison of Gene Expression Identifies Parallel Recruitment of Trans-Factors in Two Independent Origins of C4 Photosynthesis
Cited by: 141
Author(s): Sylvain Aubry, Steven Kelly, Britta M. C. Kümpers, Richard Smith-Unna, Julian M. Hibberd
Software Mentions: 1
Published: over 10 years ago

10.3390/cancers13051081

The Burden of Post-Translational Modification (PTM)—Disrupting Mutations in the Tumor Matrisome
Cited by: 12
Author(s): Elisa Holstein, Annalena Dittmann, Anni Kääriäinen, Vilma Pesola, Jarkko Koivunen, Taina Pihlajaniemi, Alexandra Naba, Valerio Izzi
Software Mentions: 1
Published: over 3 years ago

Ecosyste.ms: Papers

Projects: bioconductor: goseq

Papers Mentioning goseq 132