bioconductor: ggtree | Projects | Ecosyste.ms: Papers

10.1186/s12864-021-07579-1

LCM and RNA-seq analyses revealed roles of cell cycle and translational regulation and homoeolog expression bias in cotton fiber cell initiation
Cited by: 5
Author(s): Atsumi Ando, Ryan C. Kirkbride, Don C. Jones, Jane Grimwood, Z Jeffrey Chen
Software Mentions: 1
Published: over 3 years ago

10.3390/v12060607

Detection and Replication of Moku Virus in Honey Bees and Social Wasps
Cited by: 19
Author(s): Andrea Highfield, Jessica L. Kevill, Gideon Mordecai, J. H. Hunt, Summer Henderson, Daniel Sauvard, John Feltwell, Stephen J. Martin, Seirian Sumner, Declan C. Schroeder
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.674974

Co-harboring of Novel blaKPC–2 Plasmid and Integrative and Conjugative Element Carrying Tn6203 in Multidrug-Resistant Pseudomonas aeruginosa
Cited by: 10
Author(s): Heng Cai, Yiwei Zhu, Dandan Hu, Yue Li, Sebastian Leptihn, Belinda Loh, Xiaoting Hua, Yunsong Yu
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-70827-z

Evolutionary and structural analyses of SARS-CoV-2 D614G spike protein mutation now documented worldwide
Cited by: 165
Author(s): Sandra Isabel, Lucía Graña-Miraglia, Jahir M. Gutierrez, Cedoljub Bundalovic-Torma, H M Groves, Marc R. Isabel, Ali Reza Eshaghi, Samir N. Patel, Jonathan B. Gubbay, Tomi Poutanen, David S. Guttman, Susan M. Poutanen
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2017.01050

Survey of Antibiotic-producing Bacteria Associated with the Epidermal Mucus Layers of Rays and Skates
Cited by: 19
Author(s): Kim B. Ritchie, Melbert Schwarz, Joseph Mueller, Valeri A. Lapacek, Daniel G. Merselis, Catherine J. Walsh, Carl A. Luer
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2019.03000

Distribution of Bacterial α1,3-Galactosyltransferase Genes in the Human Gut Microbiome
Cited by: 32
Author(s): Emmanuel Montassier, Gabriel A. Al‐Ghalith, Camille Mathé, Quentin Le Bastard, Venceslas Douillard, Abel Garnier, Rémi Guimon, Bastien Raimondeau, Yann Touchefeu, Emilie Duchalais, Nicolas Vince, Sophie Limou, Pierre‐Antoine Gourraud, David‐Axel Laplaud, Arnaud Nicot, Jean‐Paul Soulillou, Laureline Berthelot
Software Mentions: 1
Published: almost 5 years ago

10.1093/ve/veab036

Molecular detection and genomic characterization of diverse hepaciviruses in African rodents
Cited by: 10
Author(s): Magda Bletsa, Bram Vrancken, Sophie Gryseels, Ine Boonen, Antonios Fikatas, Yiqiao Li, Anne Laudisoit, Sébastian Lequime, Josef Bryja, Rhodes H. Makundi, Yonas Meheretu, Benjamin Dudu Akaibe, Sylvestre Gambalemoke Mbalitini, Frederik Van de Perre, Natalie Van Houtte, Jana Těšíková, Elke Wollants, Marc Van Ranst, Oliver G. Pybus, Jan Felix Drexler, Erik Verheyen, Herwig Leirs, Joëlle Goüy de Bellocq, Philippe Lemey
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12985-020-01426-7

First detection and molecular characterisation of pseudocowpox virus in a cattle herd in Zambia
Cited by: 3
Author(s): Maureen Wakwamba Ziba, Chanda Chitala, Tirumala Bharani Kumar Settypalli, Malama Mumba, Giovanni Cattoli, Paul Fandamu, Charles Euloge Lamien
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2020.566080

Comparative Genome Analysis Reveals the Molecular Basis of Niche Adaptation of Staphylococcus epidermidis Strains
Cited by: 5
Author(s): Fei Su, Rui Tian, Yi Yang, Hexin Li, Gaoyuan Sun, Ying Liu, Bing Han, Xiaomao Xu, Xue Chen, Gang Zhao, Hongyuan Cui, Huji Xu
Software Mentions: 1
Published: about 4 years ago

10.1093/molbev/msy153

Bayesian Phylogeography and Pathogenic Characterization of Smallpox Based onHA,ATI, andCrmBGenes
Cited by: 6
Author(s): Dillon C. Adam, Matthew Scotch, C. Raina MacIntyre
Software Mentions: 1
Published: over 6 years ago

10.3389/fendo.2020.538196

New Insights Into the Evolutionary History of Melatonin Receptors in Vertebrates, With Particular Focus on Teleosts
Cited by: 10
Author(s): Gersende Maugars, Rasoul Nourizadeh-Lillabadi, Finn‐Arne Weltzien
Software Mentions: 1
Published: about 4 years ago

10.1186/s12985-021-01634-9

First molecular characterization of poxviruses in cattle, sheep, and goats in Botswana
Cited by: 6
Author(s): Boitumelo Magret Modise, Tirumala Bharani Kumar Settypalli, Tebogo Kgotlele, Dingrong Xue, Kebonyemodisa Ntesang, Kago Kumile, Ivancho Naletoski, J. Nyange, Carter Thanda, Kenny Nametso Macheng, Chandapiwa Marobela-Raborokgwe, G. J. Viljoen, Giovanni Cattoli, Charles Euloge Lamien
Software Mentions: 1
Published: over 3 years ago

10.3389/fcimb.2019.00298

Sex-Specific Linkages Between Taxonomic and Functional Profiles of Tick Gut Microbiomes
Cited by: 30
Author(s): Dasiel Obregón, Émilie Bard, David Abrial, Agustı́n Estrada-Peña, Alejandro Cabezas-Cruz
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2020.600112

Plasmodium falciparum DHFR and DHPS Mutations Are Associated With HIV-1 Co-Infection and a Novel DHPS Mutation I504T Is Identified in Western Kenya
Cited by: 5
Author(s): Brandi K. Torrevillas, Sarah M. Garrison, Alexander McKeeken, Dharmeshkumar Patel, James T. Van Leuven, Nathaniel I. Dizon, Karina I. Rivas, Nicholas J. Hathaway, Jeffrey A. Bailey, John N. Waitumbi, Carolyne M. Kifude, Janet Oyieko, V. Ann Stewart, Shirley Luckhart
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-94789-y

Genomic characterization of sporadic isolates of the dominant clone of Mycobacterium abscessus subspecies massiliense
Cited by: 12
Author(s): Rebecca M. Davidson, Jeanne Benoit, Sara M. Kammlade, Nabeeh A. Hasan, L. Elaine Epperson, Terry J. Smith, Sruthi Vasireddy, Barbara A. Brown‐Elliott, Jerry A. Nick, Kenneth N. Olivier, Adrian M. Zelazny, Charles L. Daley, Michael Strong, Richard J. Wallace
Software Mentions: 1
Published: over 3 years ago

10.3897/BDJ.9.e68598

Revison of Metaplagia Coquillett (Diptera: Tachinidae) with description of five new species from Area de Conservación Guanacaste in northwestern Costa Rica
Cited by: 0
Author(s): Alan J. Fleming, D. M. Wood, M. Alex Smith, Winnie Hallwachs, Daniel H. Janzen
Software Mentions: 1
Published: over 3 years ago

10.1002/evl3.247

Between virus correlations in the outcome of infection across host species: Evidence of virus by host species interactions
Cited by: 11
Author(s): Ryan M. Imrie, Katherine E Roberts, Ben Longdon
Software Mentions: 1
Published: about 3 years ago

10.1080/22221751.2019.1677177

Molecular surveillance of antimicrobial resistance and transmission pattern of Mycobacterium leprae in Chinese leprosy patients
Cited by: 14
Author(s): Santosh Chokkakula, Zhiming Chen, Le Wang, Haiqin Jiang, Yanqing Chen, Ying Shi, Wenyue Zhang, Wei Gao, Jun Yang, Jinlan Li, Lilin Xiong, Tiejun Shui, Jun He, Limei Shen, Jie Liu, Wang De, Hao Wang, Huan Chen, Yanfei Kuang, Bin Li, Ziyi Chen, Aiping Wu, Meiwen Yu, Yan Liu, Naveen Chandra Suryadevara, Varalakshmi Vissa, Weida Liu, Hongsheng Wang
Software Mentions: 1
Published: almost 6 years ago

10.1080/22221751.2021.1949948

Emergence of the novel SARS-CoV-2 lineage VUI-NP13L and massive spread of P.2 in South Brazil
Cited by: 16
Author(s): Fernando Hayashi Sant’Anna, Ana Paula Muterle Varela, Janira Prichula, Juliana Comerlato, Carolina Baldisserotto Comerlato, Vinícius Serafini Roglio, Gérson Fernando Mendes Pereira, Flávia Moreno, Adriana Seixas, Eliana Márcia Wendland
Software Mentions: 1
Published: almost 4 years ago

10.1080/22221751.2020.1773322

Cointegration as a mechanism for the evolution of a KPC-producing multidrug resistance plasmid in Proteus mirabilis
Cited by: 28
Author(s): Xiaoting Hua, Linyue Zhang, Robert A. Moran, Qingye Xu, Long Sun, Willem van Schaik, Yunsong Yu
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41426-018-0185-z

Characterising routes of H5N1 and H7N9 spread in China using Bayesian phylogeographical analysis
Cited by: 12
Author(s): Chau Minh Bui, Dillon C. Adam, Edwin Njoto, Matthew Scotch, C. Raina MacIntyre
Software Mentions: 1
Published: about 6 years ago

10.1186/s13068-020-01706-y

Distribution and diversity of olefins and olefin-biosynthesis genes in Gram-positive bacteria
Cited by: 6
Author(s): Maximilian Surger, Angel Angelov, Wolfgang Liebl
Software Mentions: 1
Published: over 4 years ago

10.1186/s12859-021-04182-9

Rapid protein sequence evolution via compensatory frameshift is widespread in RNA virus genomes
Cited by: 5
Author(s): Dongbin Park, Yoonsoo Hahn
Software Mentions: 1
Published: over 3 years ago

10.1186/s12859-020-3527-5

Multi-task learning sparse group lasso: a method for quantifying antigenicity of influenza A(H1N1) virus using mutations and variations in glycosylation of Hemagglutinin
Cited by: 8
Author(s): Lei Li, Deborah Chang, Lei Han, Xiaojian Zhang, Joseph Zaia, Xiu‐Feng Wan
Software Mentions: 1
Published: over 4 years ago

10.1016/S2666-5247(20)30031-8

Population-level emergence of bedaquiline and clofazimine resistance-associated variants among patients with drug-resistant tuberculosis in southern Africa: a phenotypic and phylogenetic analysis
Cited by: 64
Author(s): Camus Nimmo, James Millard, Lucy van Dorp, Kayleen Brien, Sashen Moodley, Allison Wolf, Alison D. Grant, Nesri Padayatchi, Alexander S. Pym, François Balloux, Max R O’Donnell
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.00065-21

SARS-CoV-2 ORF6 Disrupts Bidirectional Nucleocytoplasmic Transport through Interactions with Rae1 and Nup98
Cited by: 76
Author(s): Amin Addetia, Nicole A P Lieberman, Quynh Phung, Tien-Ying Hsiang, Hong Xie, Pavitra Roychoudhury, Lasata Shrestha, Michelle A. Loprieno, Meei‐Li Huang, Michael Gale, Keith R. Jerome, Alexander L. Greninger
Software Mentions: 1
Published: over 3 years ago

10.1038/s41375-018-0324-5

Genomic and transcriptomic landscapes of Epstein-Barr virus in extranodal natural killer T-cell lymphoma
Cited by: 80
Author(s): Rou Jun Peng, Bo Han, Qing Qing Cai, Xiao Yu Zuo, Tao Xia, Jie Rong Chen, Li Na Feng, Jing Quan Lim, Shu Wei Chen, Mu Sheng Zeng, Yun Guo, Bo Li, Xiao Jun Xia, Yi Xia, Yurike Laurensia, Burton K. Chia, Hui Qiang Huang, Ken H. Young, Soon Thye Lim, Choon Kiat Ong, Yi Xin Zeng, Jin Xin Bei
Software Mentions: 1
Published: almost 6 years ago

10.1002/ece3.7131

First phylogenetic analysis of Dryophthorinae (Coleoptera, Curculionidae) based on structural alignment of ribosomal DNA reveals Cenozoic diversification
Cited by: 7
Author(s): María Lourdes Chamorro, Bruno A. S. de Medeiros, Brian D. Farrell
Software Mentions: 1
Published: almost 4 years ago

10.1038/s42003-019-0354-1

Tasselseed5 overexpresses a wound-inducible enzyme, ZmCYP94B1, that affects jasmonate catabolism, sex determination, and plant architecture in maize
Cited by: 36
Author(s): China Lunde, Athen Kimberlin, Samuel Leiboff, Abraham J. Koo, Sarah Hake
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-02484-5

Genomic divergence during feralization reveals both conserved and distinct mechanisms of parallel weediness evolution
Cited by: 9
Author(s): Toshiyuki Imaizumi, Kaworu Ebana, Yoshihiro Kawahara, Chiaki Muto, Hiroyuki Kobayashi, A. Koarai, Kenneth M. Olsen
Software Mentions: 1
Published: over 3 years ago

10.1038/s41423-020-00550-2

A compromised specific humoral immune response against the SARS-CoV-2 receptor-binding domain is related to viral persistence and periodic shedding in the gastrointestinal tract
Cited by: 60
Author(s): Fengyu Hu, Fengjuan Chen, Zhihua Ou, Qinghong Fan, Xinghua Tan, Yaping Wang, Yuejun Pan, Bixia Ke, Linghua Li, Yubao Guan, Xiaoneng Mo, Jian Wang, Jinlin Wang, Chun Luo, Xueliang Wen, Min Li, Peng Ren, Changwen Ke, Junhua Li, Chunliang Lei, Xiaoping Tang, Feng Li
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0173813

Lignin-degrading peroxidases in white-rot fungus Trametes hirsuta 072. Absolute expression quantification of full multigene family
Cited by: 33
Author(s): Daria V. Vasina, Konstantin V. Moiseenko, Т.В. Федорова, T. V. Tyazhelova
Software Mentions: 1
Published: over 7 years ago

10.3390/microorganisms7100462

Phylogenetic Analyses of Xanthomonads Causing Bacterial Leaf Spot of Tomato and Pepper: Xanthomonas euvesicatoria Revealed Homologous Populations Despite Distant Geographical Distribution
Cited by: 7
Author(s): Dhakal, Dobhal, Fernando Alvarez, Arif
Software Mentions: 1
Published: about 5 years ago

10.1128/mSphere.00215-20

A Race against Time: Reduced Azithromycin Susceptibility in Salmonella enterica Serovar Typhi in Pakistan
Cited by: 29
Author(s): Junaid Iqbal, Irum F Dehraj, Megan E Carey, Zoe A. Dyson, Denise O Garrett, Jessica C. Seidman, Furqan Kabir, Senjuti Saha, Stephen Baker, Farah Naz Qamar
Software Mentions: 1
Published: about 4 years ago

10.1016/j.ijid.2021.02.110

Genomic epidemiological analysis identifies high relapse among individuals with recurring tuberculosis and provides evidence of recent household-related transmission of tuberculosis in Ghana
Cited by: 3
Author(s): Prince Asare, Stephen Osei-Wusu, Nyonuku Akosua Baddoo, Edmund Bedeley, Isaac Darko Otchere, Daniela Brites, Chloé Loiseau, Adwoa Asante-Poku, Diana Ahu Prah, Sònia Borrell, Miriam Reinhard, Michael Amo Omari, Audrey Forson, Kwadwo A. Koram, Sébastien Gagneux, Dorothy Yeboah-Manu
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0224763

A global overview of cassava genetic diversity
Cited by: 30
Author(s): Morag Ferguson, Trushar Shah, Peter Kulakow, Hernán Ceballos
Software Mentions: 1
Published: about 5 years ago

10.1099/mgen.0.000589

Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management
Cited by: 26
Author(s): Andrew J. Page, Alison E. Mather, Thanh Le-Viet, Emma Meader, Nabil-Fareed Alikhan, Gemma L. Kay, Leonardo de Oliveira Martins, Alp Aydin, David Baker, Alexander J. Trotter, Steven Rudder, Ana P. Tedim, Anastasia Kolyva, Rachael Stanley, Muhammad Yasir, María Díaz, Will Potter, Claire Stuart, Lizzie Meadows, Andrew Bell, Ana Victoria Gutiérrez, Nicholas Thomson, Evelien M. Adriaenssens, T.E. Swingler, Rachel Gilroy, Luke Griffith, Dheeraj K Sethi, Dinesh Aggarwal, Colin S Brown, Rose K. Davidson, Robert A. Kingsley, Luke Bedford, Lindsay Coupland, Ian G. Charles, Ngozi Elumogo, John Wain, Reenesh Prakash, Mark A. Webber, Darren Smith, Meera Chand, Samir Dervisevic, Justin O’Grady
Software Mentions: 1
Published: over 3 years ago

10.1099/mgen.0.000584

Genomic epidemiology of the first epidemic wave of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Palestine
Cited by: 6
Author(s): Nouar Qutob, Zaidoun Salah, Damien Richard, Hisham M. Darwish, Husam Sallam, Issa Shtayeh, Osama Najjar, Mahmoud Ruzayqat, Dana Najjar, François Balloux, Lucy van Dorp
Software Mentions: 1
Published: over 3 years ago

10.1128/mSystems.00524-21

Mosaic Ends Tagmentation (METa) Assembly for Highly Efficient Construction of Functional Metagenomic Libraries
Cited by: 1
Author(s): Terence Spencer Crofts, Alexander McFarland, Erica M. Hartmann
Software Mentions: 1
Published: over 3 years ago

10.1128/JVI.01012-21

Engineered Promoter-Switched Viruses Reveal the Role of Poxvirus Maturation Protein A26 as a Negative Regulator of Viral Spread
Cited by: 3
Author(s): Joe Holley, Rebecca P. Sumner, Sian Lant, Paolo Ribeca, David O. Ulaeto, Carlos Maluquer de Motes
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0236016

A molecular and epidemiological study of Vibrio cholerae isolates from cholera outbreaks in southern Ghana
Cited by: 9
Author(s): Emelia Danso, Prince Asare, Isaac Darko Otchere, Lorenzo Moses Akyeh, Adwoa Asante-Poku, Samuel Yaw Aboagye, Stephen Osei-Wusu, David Opare, Francine Ntoumi, Alimuddin Zumla, Samuel Duodu, Dorothy Yeboah-Manu
Software Mentions: 1
Published: over 4 years ago

10.1101/2020.08.13.20174136

Genomic Diversity of SARS-CoV-2 During Early Introduction into the United States National Capital Region
Cited by: 13
Author(s): Peter Thielen, Shirlee Wohl, Thomas Mehoke, S. Ramakrishnan, Melanie Kirsche, Oluwaseun Falade‐Nwulia, Nídia Sequeira Trovão, Amanda Ernlund, Craig Howser, Norah Sadowski, Paul Morris, Mark Hopkins, Matthew C. Schwartz, Yunfan Fan, Victoria Gniazdowski, Justin Lessler, Lauren Sauer, Michael C. Schatz, Jared D. Evans, Stuart C. Ray, Winston Timp, Heba H. Mostafa
Software Mentions: 1
Published: over 4 years ago

10.1101/2020.08.13.20173161

Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with high attack rate
Cited by: 32
Author(s): Amin Addetia, Katharine H.D. Crawford, Adam S. Dingens, Haiying Zhu, Pavitra Roychoudhury, Meei‐Li Huang, Keith R. Jerome, Jesse D. Bloom, Alexander L. Greninger
Software Mentions: 1
Published: over 4 years ago

10.1093/ve/veaa069

Discovery and surveillance of viruses from salmon in British Columbia using viral immune-response biomarkers, metatranscriptomics, and high-throughput RT-PCR
Cited by: 13
Author(s): Gideon Mordecai, Emiliano Di Cicco, Oliver P. Günther, Angela D. Schulze, Karia H. Kaukinen, Shaorong Li, Amy Tabata, Tobi J. Ming, H. W. Ferguson, Curtis A. Suttle, Kristina M. Miller
Software Mentions: 1
Published: about 4 years ago

10.1002/jsp2.1018

Successful fishing for nucleus pulposus progenitor cells of the intervertebral disc across species
Cited by: 40
Author(s): Daisuke Sakai, Jordy Schol, Frances C. Bach, Adel Tekari, Nobuho Sagawa, Yoshihiko Nakamura, Samantha Chan, Takaaki Nakai, Laura B. Creemers, Daniela Angelika Frauchiger, Rahel Deborah May, Sibylle Grad, Masahiko Watanabe, Marianna A. Tryfonidou, Benjamin Gantenbein
Software Mentions: 1
Published: over 6 years ago

10.3390/vaccines9050468

Quantifying the Persistence of Vaccine-Related T Cell Epitopes in Circulating Swine Influenza A Strains from 2013–2017
Cited by: 3
Author(s): Swan Tan, Andres H. Gutiérrez, Phillip C. Gauger, Tanja Opriessnig, Justin Bahl, Leonard Moise, Anne S. De Groot
Software Mentions: 1
Published: over 3 years ago

10.1128/AEM.02507-20

Cry75Aa (Mpp75Aa) Insecticidal Proteins for Controlling the Western Corn Rootworm, Diabrotica virgifera virgifera LeConte (Coleoptera: Chrysomelidae), Isolated from the Insect-Pathogenic Bacterium Brevibacillus laterosporus
Cited by: 11
Author(s): David Bowen, Yong Yin, Stanisław Flasiński, Catherine Chay, Gregory J. Bean, Jason Milligan, William J. Moar, Aihong Pan, Brent J. Werner, Karrie A. Buckman, Arlene Howe, Todd A. Ciche, Keith H. Turner, Michael Pleau, Jun Zhang, Jean-Louis K. Kouadio, Bruce E. Hibbard, Paula A. Price, James K. Roberts
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41396-019-0557-y

Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere
Cited by: 63
Author(s): Devin F. R. Doud, Robert M. Bowers, Frederik Schulz, Markus de Raad, Kai Deng, Angela Tarver, E.M. Glasgow, Kirk Vander Meulen, Brian G. Fox, Sam Deutsch, Yasuo Yoshikuni, Trent Northen, Brian P. Hedlund, Steven W. Singer, Natalia Ivanova, Tanja Woyke
Software Mentions: 1
Published: about 5 years ago

10.1093/gbe/evaa006

Genomic Analysis of Wolbachia from Laodelphax striatellus (Delphacidae, Hemiptera) Reveals Insights into Its “Jekyll and Hyde” Mode of Infection Pattern
Cited by: 35
Author(s): Xiao‐Li Bing, Dian‐Shu Zhao, Jing‐Tao Sun, Kaijun Zhang, Xiao‐Yue Hong
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13059-020-02112-1

A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex
Cited by: 32
Author(s): Susanna Sabin, Alexander Herbig, Åshild J. Vågene‬, Torbjörn Ahlström, Gracijela Božović, Caroline Arcini, Denise Kühnert, Kirsten I. Bos
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pbio.3000723

Genetic and functional diversification of chemosensory pathway receptors in mosquito-borne filarial nematodes
Cited by: 30
Author(s): Nicolas J Wheeler, Zachary W. Heimark, Paul M. Airs, Alexis Mann, Lyric C. Bartholomay, Mostafa Zamanian
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.29276

Clarinet (CLA-1), a novel active zone protein required for synaptic vesicle clustering and release
Cited by: 51
Author(s): Xuan Zhao, Laura Manning, Jessica C. Nelson, Janet E. Richmond, Daniel A. Colón-Ramos, Kang Shen, Peri T. Kurshan
Software Mentions: 1
Published: about 7 years ago

10.1186/s40168-021-01135-5

Blockage of bacterial FimH prevents mucosal inflammation associated with Crohn’s disease
Cited by: 15
Author(s): G. Chevalier, Arnaud Laveissière, Guillaume Desachy, Nicolas Barnich, Adeline Sivignon, Marc Maresca, Cendrine Nicoletti, Eric Di Pasquale, Margarita Martínez-Medina, Kenneth W. Simpson, Vijay Yajnik, Harry Sokol, Temitayo Adegbamigbe, Tariq Ahmad, Ian Arnott, Yoram Bouhnik, Franck Carbonnel, Jean–Frédéric Colombel, Glen A. Doherty, Fraser Cummings, Xavier Hébuterne, Hans Herfarth, David Kevans, Guillaume Pineton de Chambrun, Maria Nachury, Stéphane Nancey, Xavier Roblin, Mark Tremelling, Jonathan Plassais, Francesco Strozzi, Alessandra Cervino, Rachel Morra, Christophe Bonny
Software Mentions: 1
Published: over 3 years ago

10.1128/AAC.01518-20

Prolonged Outbreak of Multidrug-Resistant Shigella sonnei Harboring bla CTX-M-27 in Victoria, Australia
Cited by: 27
Author(s): Danielle J. Ingle, Patiyan Andersson, Mary Valcanis, Jessica Barnden, Anders Gonçalves da Silva, Kristy Horan, Torsten Seemann, Marion Easton, Deborah A. Williamson, Norelle L Sherry, Benjamin P Howden
Software Mentions: 1
Published: about 4 years ago

10.3897/phytokeys.167.58538

Hydrostachys flabellifera (Hydrostachyaceae), a new species from Madagascar
Cited by: 0
Author(s): Zhun Xu, Jing Tian, S. H. J. V. Rapanarivo, Rokiman Letsara, Rivontsoa A. Rakotonasolo, Guy E. Onjalalaina, Guang‐Wan Hu, Qingfeng Wang
Software Mentions: 1
Published: about 4 years ago

10.1038/s41438-018-0080-8

The USDA cucumber (Cucumis sativus L.) collection: genetic diversity, population structure, genome-wide association studies, and core collection development
Cited by: 65
Author(s): Xin Wang, Kan Bao, Umesh K. Reddy, Yang Bai, Sue A. Hammar, Chen Jiao, Todd C. Wehner, Axel O. Ramírez-Madera, Yiqun Weng, Rebecca Grumet, Zhangjun Fei
Software Mentions: 1
Published: about 6 years ago

10.3390/genes9080389

Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
Cited by: 190
Author(s): Paulina Estrada‐de los Santos, Marike Palmer, Belén Chávez-Ramírez, Chrizelle W. Beukes, Emma Theodora Steenkamp, Leah Briscoe, Noor Khan, Marta Maluk, Marcel Lafos, Ethan A. Humm, Monique Arrabit, Martin F. Crook, Eduardo Gross, Marcelo F. Simon, Fábio Bueno dos Reis, William B. Whitman, Nicole Shapiro, Philip S. Poole, Ann M. Hirsch, Stephanus N. Venter, Euan K. James
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.8852

Cirripectes matatakaro, a new species of combtooth blenny from the Central Pacific, illuminates the origins of the Hawaiian fish fauna
Cited by: 6
Author(s): Mykle L Hoban, Jeffrey T. Williams
Software Mentions: 1
Published: over 4 years ago

10.1186/s12916-019-1487-2

A landscape of genomic alterations at the root of a near-untreatable tuberculosis epidemic
Cited by: 16
Author(s): Marisa Klopper, Tim H. Heupink, Grant A. Hill-Cawthorne, Elizabeth Streicher, Anzaan Dippenaar, Margaretha de Vos, Abdallah Abdallah, Jason Limberis, Matthias Merker, Scott P. Burns, Stefan Niemann, Keertan Dheda, James E. Posey, Arnab Pain, Robin M. Warren
Software Mentions: 1
Published: almost 5 years ago

10.1172/jci.insight.144350

Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore–Washington metropolitan area
Cited by: 30
Author(s): Peter Thielen, Shirlee Wohl, Thomas Mehoke, S. Ramakrishnan, Melanie Kirsche, Oluwaseun Falade‐Nwulia, Nídia Sequeira Trovão, Amanda Ernlund, Craig Howser, Norah Sadowski, C. Paul Morris, Mark Hopkins, Matthew C. Schwartz, Yunfan Fan, Victoria Gniazdowski, Justin Lessler, Lauren Sauer, Michael C. Schatz, Jared D. Evans, Stuart C. Ray, Winston Timp, Heba H. Mostafa
Software Mentions: 1
Published: over 3 years ago

10.1186/s12866-021-02160-y

Population structure and uropathogenic potential of extended-spectrum cephalosporin-resistant Escherichia coli from retail chicken meat
Cited by: 5
Author(s): May Linn Buberg, Solveig Sølverød Mo, Camilla Sekse, Marianne Sunde, Yngvild Wasteson, Ingun Lund Witsø
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.67852

Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya
Cited by: 21
Author(s): Samuel Kariuki, Zoe A. Dyson, Cecilia Mbae, Ronald Ngetich, Susan Kavai, Celestine Wairimu, Stephen Anyona, Naomi Gitau, Robert Onsare, Beatrice Ongandi, Sebastián Duchêne, Mohamed Ali, John D. Clemens, Kathryn E. Holt, Gordon Dougan
Software Mentions: 1
Published: about 3 years ago

10.3390/microorganisms9081792

MDR and Pre-XDR Clinical Mycobacterium tuberculosis Beijing Strains: Assessment of Virulence and Host Cytokine Response in Mice Infectious Model
Cited by: 4
Author(s): Mikhail V. Fursov, Egor Shitikov, Denis Lagutkin, Anastasiia D. Fursova, Elena Ganina, Т. И. Комбарова, Natalia S. Grishenko, Tatiana I. Rudnitskaya, Dmitry Bespiatykh, Nadezhda Vyacheslavovna Kolupaeva, Viktoria V Firstova, Л. В. Домотенко, Anna Panova, Anatoliy Vinokurov, Vladimir A. Gushchin, Artem P. Tkachuk, Irina Vasilyeva, В. Д. Потапов, I. A. Dyatlov
Software Mentions: 1
Published: over 3 years ago

10.1186/s13321-019-0366-3

Cheminformatics approach to exploring and modeling trait-associated metabolite profiles
Cited by: 7
Author(s): Jeremy R. Ash, Mélaine A. Kuenemann, Daniel M. Rotroff, Alison A. Motsinger‐Reif, Denis Fourches
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.03140

Evaluation of a Novel MALDI Biotyper Algorithm to Distinguish Mycobacterium intracellulare From Mycobacterium chimaera
Cited by: 19
Author(s): L. Elaine Epperson, Markus Timke, Nabeeh A. Hasan, P G Paul G Godo, David Durbin, Niels K. Helstrom, Gongyi Shi, Markus Kostrzewa, Michael Strong, Max Salfinger
Software Mentions: 1
Published: almost 6 years ago

10.1128/JCM.02107-20

Neutralizing Antibodies Correlate with Protection from SARS-CoV-2 in Humans during a Fishery Vessel Outbreak with a High Attack Rate
Cited by: 463
Author(s): Amin Addetia, Katharine H.D. Crawford, Adam S. Dingens, Haiying Zhu, Pavitra Roychoudhury, Meei Li Huang, Keith R. Jerome, Jesse D. Bloom, Alexander L. Greninger
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2017.00173

Staphylococcal aureus Enterotoxin C and Enterotoxin-Like L Associated with Post-partum Mastitis
Cited by: 10
Author(s): Kristina Træholt Franck, Heidi Gumpert, Bente Olesen, Anders Rhod Larsen, Andreas Petersen, Jette Bangsborg, Per Albertsen, Henrik Westh, Mette Damkjær Bartels
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2021.630573

Structural, Metabolic and Evolutionary Comparison of Bacterial Endospore and Exospore Formation
Cited by: 17
Author(s): Polina Beskrovnaya, Danielle L. Sexton, Mona Golmohammadzadeh, Ameena Hashimi, Elitza I. Tocheva
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.ppat.1006749

Genome-wide evolutionary dynamics of influenza B viruses on a global scale
Cited by: 75
Author(s): Pinky Langat, Jayna Raghwani, Gytis Dudas, Thomas A. Bowden, S Edwards, Astrid Gall, Trevor Bedford, Andrew Rambaut, Rodney S. Daniels, Colin A. Russell, Oliver G. Pybus, John W. McCauley, Paul Kellam, Simon J. Watson
Software Mentions: 1
Published: almost 7 years ago

10.3390/microorganisms9020224

Lower Recovery of Nontuberculous Mycobacteria from Outdoor Hawai’i Environmental Water Biofilms Compared to Indoor Samples
Cited by: 12
Author(s): Ravleen Virdi, Melissa E. Lowe, Grant J. Norton, Stephanie N. Dawrs, Hasan Na, L. Elaine Epperson, Cody Glickman, Edward D. Chan, Michael Strong, James Crooks, Jennifer R. Honda
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2018.02820

A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex
Cited by: 117
Author(s): Daniela Brites, Chloé Loiseau, Fabrizio Menardo, Sònia Borrell, Maria Beatrice Boniotti, Robin M. Warren, Anzaan Dippenaar, Sven D.C. Parsons, Christian Beisel, Marcel A. Behr, Janet Fyfe, Mireia Coscollá, Sébastien Gagneux
Software Mentions: 1
Published: almost 6 years ago

10.1080/23802359.2019.1644225

The complete mitochondrial genome of record-breaking migrant Arctic tern (Sterna paradisaea)
Cited by: 2
Author(s): Ilze Skujina, Amy Healey, Sophie de Becquevort, Paul W. Shaw, Robert McMahon, Charly Morgan, Caron Evans, Rachel C. Taylor, Matthew J. Hegarty, Niall J. McKeown
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.03055

Evolution of the Population Structure of Staphylococcus pseudintermedius in France
Cited by: 26
Author(s): Marine Bergot, Patrícia Martins-Simões, Hélène Kilian, Pierre Châtre, Kate A. Worthing, Jacqueline M. Norris, Jean‐Yves Madec, François Laurent, Marisa Haenni
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12985-020-1294-6

Assessment of a multiplex PCR and Nanopore-based method for dengue virus sequencing in Indonesia
Cited by: 23
Author(s): Sam Stubbs, Barbara Blacklaws, Benediktus Yohan, Frilasita A. Yudhaputri, Rahma Hayati, Brian Schwem, Edsel Maurice Salvaña, Raul V. Destura, James Lester, Khin Saw Aye Myint, R. Tedjo Sasmono, Simon D. W. Frost
Software Mentions: 1
Published: almost 5 years ago

Projects: bioconductor: ggtree

Papers Mentioning ggtree 474