bioconductor: genefilter | Projects

10.18632/oncotarget.25420

Comparative molecular characterization of typical and exceptional responders in glioblastoma
Cited by: 14
Author(s): Kristin Wipfler, Adam Cornish, Chittibabu Guda
Software Mentions: 2
Published: over 6 years ago

10.1002/ece3.1098

Mating system variation drives rapid evolution of the female transcriptome inDrosophila pseudoobscura
Cited by: 18
Author(s): Elina Immonen, Rhonda R. Snook, Michael G. Ritchie
Software Mentions: 2
Published: over 10 years ago

10.1016/j.celrep.2018.02.027

S. aureus Evades Macrophage Killing through NLRP3-Dependent Effects on Mitochondrial Trafficking
Cited by: 62
Author(s): Taylor S. Cohen, Michelle L. Boland, Brandon B. Boland, Virginia Takahashi, Andrey Tovchigrechko, Young Lee, Aimee D. Wilde, Mark J. Mazaitis, Omari Jones-Nelson, Christine Tkaczyk, Rajiv Raja, C. Kendall Stover, Bret R. Sellman
Software Mentions: 2
Published: almost 7 years ago

10.1155/2016/4369431

Integrated Analysis of DNA Methylation and mRNA Expression Profiles Data to Identify Key Genes in Lung Adenocarcinoma
Cited by: 15
Author(s): Xiang Jin, Xingang Liu, Xiaodan Li, Yinghui Guan
Software Mentions: 2
Published: almost 9 years ago

10.1186/1752-0509-3-55

A graphical model approach for inferring large-scale networks integrating gene expression and genetic polymorphism
Cited by: 30
Author(s): Jen-Hwa Chu, Scott T. Weiss, Vincent J. Carey, Benjamin A. Raby
Software Mentions: 2
Published: over 15 years ago

10.1186/s12864-015-1896-3

Weight-reduction through a low-fat diet causes differential expression of circulating microRNAs in obese C57BL/6 mice
Cited by: 42
Author(s): Ching‐Hua Hsieh, Cheng-Shyuan Rau, Shao-Chun Wu, Johnson Chia‐Shen Yang, Yi-Chan Wu, Tsu-Hsiang Lu, Siou-Ling Tzeng, Chi‐Chuan Wu, Ching-Yi Lin
Software Mentions: 2
Published: about 9 years ago

10.1186/s12864-016-3119-y

Australian black field crickets show changes in neural gene expression associated with socially-induced morphological, life-history, and behavioral plasticity
Cited by: 12
Author(s): Michael M. Kasumovic, Zhiliang Chen, Marc R. Wilkins
Software Mentions: 2
Published: about 8 years ago

10.12688/f1000research.4524.1

KEGGscape: a Cytoscape app for pathway data integration
Cited by: 63
Author(s): Kozo Nishida, Keiichiro Ono, Shigehiko Kanaya, Koichi Takahashi
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2407-6-200

Selection of suitable reference genes for accurate normalization of gene expression profile studies in non-small cell lung cancer
Cited by: 89
Author(s): Silvia Saviozzi, Francesca Cordero, Marco Lo Iacono, Silvia Novello, Scagliotti V. Giorgio, Raffaele Calogero
Software Mentions: 2
Published: over 18 years ago

10.1111/acel.12505

Advanced aging phenotype is revealed by epigenetic modifications in rat liver after in utero malnutrition
Cited by: 18
Author(s): Hye Heo, Jessica N. Tozour, Fabien Delahaye, Yongmei Zhao, Lingguang Cui, Nir Barzilai, Francine Einstein
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.15681

The histone demethylaseKDM3Aregulates the transcriptional program of the androgen receptor in prostate cancer cells
Cited by: 74
Author(s): Stephen Wilson, Lingling Fan, Natasha Sahgal, Jianfei Qi, Fabian V. Filipp
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2018.02870

Theiler's Virus-Mediated Immunopathology in the CNS and Heart: Roles of Organ-Specific Cytokine and Lymphatic Responses
Cited by: 15
Author(s): Seiichi Omura, Eiichiro Kawai, Fumitaka Sato, Nicholas E. Martinez, Alireza Minagar, Mahmoud Al‐Kofahi, J. Winny Yun, Urška Cvek, Marjan Trutschl, J. Steven Alexander, Ikuo Tsunoda
Software Mentions: 2
Published: almost 6 years ago

10.3389/fimmu.2019.00516

Bioinformatics Analyses Determined the Distinct CNS and Peripheral Surrogate Biomarker Candidates Between Two Mouse Models for Progressive Multiple Sclerosis
Cited by: 11
Author(s): Seiichi Omura, Fumitaka Sato, Nicholas E. Martinez, Ah-Mee Park, Mitsugu Fujita, Nikki J. Kennett, Urška Cvek, Alireza Minagar, J. Steven Alexander, Ikuo Tsunoda
Software Mentions: 2
Published: over 5 years ago

10.14252/foodsafetyfscj.D-20-00032

Effect of Transgenic Rootstock Grafting on the Omics Profiles in Tomato
Cited by: 9
Author(s): Hiroaki Kodama, Taira Miyahara, Taichi Oguchi, Takashi Tsujimoto, Yoshihiro Ozeki, Toshiki Ogawa, Yube Yamaguchi, Daisaku Ohta
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0123316

Gene Profiling Characteristics of Radioadaptive Response in AG01522 Normal Human Fibroblasts
Cited by: 18
Author(s): Jue Hou, Fan Wang, Peizhong Kong, K.N. Yu, Hongzhi Wang, Wei Han
Software Mentions: 2
Published: over 9 years ago

10.3390/jcdd8040045

Transcriptome Analysis Reveals Differential Gene Expression between the Closing Ductus Arteriosus and the Patent Ductus Arteriosus in Humans
Cited by: 5
Author(s): Junichi Saito, Tomoyuki Kojima, Shota Tanifuji, Yuko Kato, Shuntaro Oka, Yukio Ichikawa, Etsuko Miyagi, Tsuyoshi Tachibana, Toshihide Asou, Utako Yokoyama
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0044998

Myelin-Derived Lipids Modulate Macrophage Activity by Liver X Receptor Activation
Cited by: 54
Author(s): Jeroen F. J. Bogie, Silke Timmermans, Vân Anh Huynh-Thu, Alexandre Irrthum, Hubert J.M. Smeets, Jan Åke Gustafsson, Knut R. Steffensen, Monique Mulder, Piet Stinissen, Niels Hellings, Jerome J. A. Hendriks
Software Mentions: 2
Published: about 12 years ago

10.1186/1748-717X-9-111

Integrating microRNA and mRNA expression profiles in response to radiation-induced injury in rat lung
Cited by: 27
Author(s): Ling Xie, Jundong Zhou, Shuyu Zhang, Qing Chen, Renchun Lai, Wei‐Qun Ding, Chuanjun Song, Xingjun Meng, Jinchang Wu
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0077936

Profiling Circulating MicroRNA Expression in Experimental Sepsis Using Cecal Ligation and Puncture
Cited by: 56
Author(s): Shao-Chun Wu, Johnson Chia‐Shen Yang, Cheng-Shyuan Rau, Yi‐Chun Chen, Tsu-Hsiang Lu, Ming‐Wei Lin, Siou-Ling Tzeng, Yi-Chan Wu, Chi‐Chuan Wu, Ching‐Hua Hsieh
Software Mentions: 2
Published: about 11 years ago

10.7717/peerj.2775

Network-based analysis of differentially expressed genes in cerebrospinal fluid (CSF) and blood reveals new candidate genes for multiple sclerosis
Cited by: 46
Author(s): Nahid Safari-Alighiarloo, Mostafa Rezaei‐Tavirani, Mohammad Taghi Taghizadeh, Seyyed Mohammad Tabatabaei, Saeed Namaki
Software Mentions: 2
Published: almost 8 years ago

10.18632/oncotarget.20076

mRNA expression profiles obtained from microdissected pancreatic cancer cells can predict patient survival
Cited by: 4
Author(s): Ana-Bárbara García-García, M. Carmen Gómez-Mateo, Rebeca Hilario, Pilar Rentero-Garrido, Álvaro Martínez‐Doménech, Verónica González-Albert, Andrés Cervantes, Pablo Marín-García, Felipe Javier Chaves, Antonio Ferrández‐Izquierdo, Luís Sabater
Software Mentions: 2
Published: over 7 years ago

10.1038/srep42460

Variation-preserving normalization unveils blind spots in gene expression profiling
Cited by: 18
Author(s): Carlos P. Roca, Susana I. L. Gomes, Mónica J.B. Amorim, Janeck J. Scott-Fordsmand
Software Mentions: 2
Published: over 7 years ago

10.3892/mmr.2015.3794

Identification of genes associated with laryngeal squamous cell carcinoma samples based on bioinformatic analysis
Cited by: 6
Author(s): Bo Yang, Xiaoyong Bao
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2148-11-47

Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana
Cited by: 140
Author(s): Mark T.A. Donoghue, Channa Keshavaiah, Sandesh H Swamidatta, Charles Spillane
Software Mentions: 2
Published: almost 14 years ago

10.1007/s10549-017-4652-3

Functional transcriptomic annotation and protein–protein interaction network analysis identify NEK2, BIRC5, and TOP2A as potential targets in obese patients with luminal A breast cancer
Cited by: 31
Author(s): Miriam Nuncia-Cantarero, Sandra Martínez-Canales, Fernando Andrés-Pretel, Gabriel Santpere, Alberto Ocaña, Eva M Moya
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13058-016-0676-6

Downregulation of histone H2A and H2B pathways is associated with anthracycline sensitivity in breast cancer
Cited by: 24
Author(s): Marsela Braunstein, Linda M. Liao, Nicola Lyttle, Nazleen Lobo, Karen Taylor, Paul M. Krzyzanowski, Irina Kalatskaya, Cindy Q. Yao, Lincoln Stein, Paul C. Boutros, Christopher Twelves, Richard Marcellus, John M.S. Bartlett, Melanie Spears
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-020-72078-4

Esterified carotenoids are synthesized in petals of carnation (Dianthus caryophyllus) and accumulate in differentiated chromoplasts
Cited by: 10
Author(s): Luna Iijima, Sanae Kishimoto, Akemi Ohmiya, Masafumi Yagi, Emi Okamoto, Taira Miyahara, Takashi Tsujimoto, Yoshihiro Ozeki, Nahoko Uchiyama, Takashi Hakamatsuka, Takanobu Kouno, Emilio Cano, Mitsuru Shimizu, Masahiro Nishihara
Software Mentions: 2
Published: about 4 years ago

10.1186/s13287-018-0950-x

New insights into the genic and metabolic characteristics of induced pluripotent stem cells from polycystic ovary syndrome women
Cited by: 15
Author(s): Zheying Min, Qian Gao, Xiumei Zhang, Yong Fan, Tao Tan, Rong Li, Yue Zhao, Yang Yu
Software Mentions: 2
Published: over 6 years ago

10.7150/thno.48247

MED13L integrates Mediator-regulated epigenetic control into lung cancer radiosensitivity
Cited by: 17
Author(s): Nasha Zhang, Ying Song, Yeyang Xu, Jiandong Liu, Yue Shen, Lixin Zhou, Jinming Yu, Ming Yang
Software Mentions: 2
Published: almost 5 years ago

10.1155/2013/458278

Transcriptional Response of Bovine Monocyte-Derived Macrophages after the Infection with Different ArgentineanMycobacterium bovisIsolates
Cited by: 7
Author(s): Karina Caimi, Federico Carlos Blanco, Marcelo Soria, Fabiana Bigi
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0189087

New roles for nuclear EGFR in regulating the stability and translation of mRNAs associated with VEGF signaling
Cited by: 17
Author(s): Klaus Dittmann, Claus Mayer, Stefan Czemmel, Stephan M. Huber, H. Peter Rodemann
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13059-020-1936-4

A post-transcriptional program of chemoresistance by AU-rich elements and TTP in quiescent leukemic cells
Cited by: 21
Author(s): Sooncheol Lee, Douglas S. Micalizzi, Samuel S. Truesdell, Syed I. A. Bukhari, Myriam Boukhali, Jennifer Lombardi‐Story, Yasutaka Kato, Min‐Kyung Choo, Ipsita Dey‐Guha, Fei Ji, Benjamin Nicholson, David T. Myers, Dongjun Lee, Maria Antonietta Mazzola, Radhika Raheja, Adam Langenbucher, Nicholas J. Haradhvala, Michael S. Lawrence, Roopali Gandhi, Christopher Tiedje, Manuel D. Díaz-Muñoz, David A. Sweetser, Ruslan I. Sadreyev, David B. Sykes, Wilhelm Haas, Daniel A. Haber, Shyamala Maheswaran, Shobha Vasudevan
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-016-2671-9

Immediate and long-term transcriptional response of hind muscle tissue to transient variation of incubation temperature in broilers
Cited by: 6
Author(s): Watcharapong Naraballobh, Nares Trakooljul, Eduard Muráni, Ronald M. Brunner, Carsten Krischek, Sabine Janisch, Michael Wicke, Siriluck Ponsuksili, Klaus Wimmers
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0179230

Identification and prediction of alternative transcription start sites that generate rod photoreceptor-specific transcripts from ubiquitously expressed genes
Cited by: 6
Author(s): Evgenya Y. Popova, Anna C. Salzberg, Chen Yang, Samuel Shao Min Zhang, Colin J. Barnstable
Software Mentions: 1
Published: over 7 years ago

10.1002/2211-5463.12659

Low expression of WWC1 , a tumor suppressor gene, is associated with aggressive breast cancer and poor survival outcome
Cited by: 12
Author(s): Zhanwei Wang, Dionyssios Katsaros, Nicoletta Biglia, Siyan Yi, Yuanyuan Fu, Maarit Tiirikainen, Herbert Yu
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.01007

Mining Public Toxicogenomic Data Reveals Insights and Challenges in Delineating Liver Steatosis Adverse Outcome Pathways
Cited by: 14
Author(s): Mohamed Diwan M. AbdulHameed, Venkat R. Pannala, Anders Wallqvist
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0054365

Frequency and Prognostic Impact of CEBPA Proximal, Distal and Core Promoter Methylation in Normal Karyotype AML: A Study on 623 Cases
Cited by: 24
Author(s): Annette Fasan, Tamara Alpermann, Claudia Haferlach, Vera Grossmann, Andreas Roller, Alexander Kohlmann, Christiane Eder, Wolfgang Kern, Torsten Haferlach, Susanne Schnittger
Software Mentions: 1
Published: almost 12 years ago

Projects: bioconductor: genefilter

Papers Mentioning genefilter 142