bioconductor: enrichplot | Projects

10.3389/fgene.2020.566918

Transcriptomic Analysis of Glycolysis-Related Genes Reveals an Independent Signature of Bladder Carcinoma
Cited by: 3
Author(s): Zezhong Mou, Chen Yang, Zheyu Zhang, Siqi Wu, Chenyang Xu, Cheng Zhang, Xiaoming Dai, Xinan Chen, Yuxi Ou, Haowen Jiang
Software Mentions: 4
Published: almost 4 years ago

10.3389/fbioe.2020.00266

Characterization of lncRNA-Associated ceRNA Network to Reveal Potential Prognostic Biomarkers in Lung Adenocarcinoma
Cited by: 8
Author(s): Yang Wang, Ruyi He, Lixin Ma
Software Mentions: 4
Published: over 4 years ago

10.3389/fimmu.2018.03137

The Schistosomiasis SpleenOME: Unveiling the Proteomic Landscape of Splenomegaly Using Label-Free Mass Spectrometry
Cited by: 6
Author(s): Miguel Cosenza-Contreras, Renata Alves de Oliveira e Castro, Bruno Mattei, Jonatan Marques Campos, Gustavo Gonçalves Silva, Nívia Carolina Nogueira de Paiva, Rodrigo Dian de Oliveira Aguiar-Soares, Cláudia Martins Carneiro, Luís Afonso, William Castro-Borges
Software Mentions: 4
Published: almost 6 years ago

10.3389/fphar.2021.638622

Large-Scale Transcriptome Analysis Identified a Novel Cancer Driver Genes Signature for Predicting the Prognostic of Patients With Hepatocellular Carcinoma
Cited by: 4
Author(s): Li Gao, Xinyue Du, Xiaoxiong Wu, Shen Wu, Yufei Zhang, Jianing Xu, Hao Wang, Tingsong Chen
Software Mentions: 3
Published: over 3 years ago

10.1186/s13045-021-01155-6

Combine and conquer: manganese synergizing anti-TGF-β/PD-L1 bispecific antibody YM101 to overcome immunotherapy resistance in non-inflamed cancers
Cited by: 46
Author(s): Ming Yi, Mengke Niu, Jing Zhang, Shiyu Li, Shuangli Zhu, Yongxiang Yan, Ning Li, Pengfei Zhou, Qian Chu, Kongming Wu
Software Mentions: 3
Published: about 3 years ago

10.3389/fcell.2021.657219

Transcriptomic Analysis Identified ARHGAP Family as a Novel Biomarker Associated With Tumor-Promoting Immune Infiltration and Nanomechanical Characteristics in Bladder Cancer
Cited by: 7
Author(s): Chen Yang, Siqi Wu, Zezhong Mou, Quan Zhou, Zheyu Zhang, Yi‐Ling Chen, Yuxi Ou, Xinan Chen, Xiaoming Dai, Chenyang Xu, Na Liu, Haowen Jiang
Software Mentions: 3
Published: over 3 years ago

10.1186/s12935-021-02031-6

The underlying molecular mechanisms and prognostic factors of RNA binding protein in colorectal cancer: a study based on multiple online databases
Cited by: 1
Author(s): Qinglian He, Ziqi Li, Lijun Xue, Qian Zhou, Haibing Yu, Yuanlin Ding, Guofeng Xu, Wei Zhu
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.604784

Influence of Immune Microenvironment on Diagnosis and Prognosis of Head and Neck Squamous Cell Carcinoma
Cited by: 8
Author(s): Guo-Hong Liu, Chunjue Yuan, Jiaojiao Ma, Yunbao Pan, Haibo Xu
Software Mentions: 3
Published: over 3 years ago

10.3389/fphys.2020.617492

Mitochondrial Calcium Uniporter Deficiency in Zebrafish Causes Cardiomyopathy With Arrhythmia
Cited by: 13
Author(s): Adam D. Langenbacher, Hirohito Shimizu, Welkin Hsu, Yali Zhao, Alexandria Borges, Carla M. Koehler, Jau-Nian Chen
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12935-021-02000-z

An immune-related model based on INHBA, JAG2 and CCL19 to predict the prognoses of colon cancer patients
Cited by: 3
Author(s): Xuankun Yang, Yan Jia, Yahui Jiang, Yaxu Wang
Software Mentions: 3
Published: over 3 years ago

10.3389/fmolb.2021.720370

Hydroxychloroquine Induces Apoptosis in Cholangiocarcinoma via Reactive Oxygen Species Accumulation Induced by Autophagy Inhibition
Cited by: 8
Author(s): Jiaqi Chen, Qiaoya Pan, Yang Bai, Xuepeng Chen, Yi Zhou
Software Mentions: 3
Published: about 3 years ago

10.1042/BSR20194464

Identification of sulforaphane regulatory network in hepatocytes by microarray data analysis based on GEO database
Cited by: 2
Author(s): Lei Gao, Jinshen Wang, Yuhua Zhao, Junhua Liu, Da Cai, Xiao Zhang, Yutao Wang, Shuqiu Zhang
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2021.622085

High Iodine Induces the Proliferation of Papillary and Anaplastic Thyroid Cancer Cells via AKT/Wee1/CDK1 Axis
Cited by: 2
Author(s): Chunpeng Lv, Yanhui Gao, Jinyin Yao, Yan Li, Qun Lou, Meichen Zhang, Qing Tian, Yanmei Yang, Dianjun Sun
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-40629-z

TACCO, a Database Connecting Transcriptome Alterations, Pathway Alterations and Clinical Outcomes in Cancers
Cited by: 16
Author(s): Po Hao Chou, Wei Liao, Kuo‐Wang Tsai, Ku Chung Chen, Jau‐Song Yu, Ting-Wen Chen
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.709666

Establishment of an Endocytosis-Related Prognostic Signature for Patients With Low-Grade Glioma
Cited by: 4
Author(s): Dawei Wang, Shiguang Liu, Guangxin Wang
Software Mentions: 3
Published: about 3 years ago

10.3390/diagnostics10090689

The Prognostic Significance of Immune-Related Metabolic Enzyme MTHFD2 in Head and Neck Squamous Cell Carcinoma
Cited by: 7
Author(s): Li Cui, Huan Chen, Xinyuan Zhao
Software Mentions: 3
Published: about 4 years ago

10.1155/2020/8925420

Integrated Analysis of Hub Genes and miRNAs in Dilated Cardiomyopathy
Cited by: 11
Author(s): Kai Huang, Shuyan Wen, Junhui Huang, Fangrui Wang, Liewen Pang, Yiqing Wang, Xiaotian Sun
Software Mentions: 3
Published: about 4 years ago

10.3389/fonc.2020.598437

Elevated Heterogeneous Nuclear Ribonucleoprotein C Expression Correlates With Poor Prognosis in Patients With Surgically Resected Lung Adenocarcinoma
Cited by: 18
Author(s): Wei Guo, Qilin Huai, Guochao Zhang, Lei Guo, Peng Song, Xuemin Xue, Fengwei Tan, Qi Xue, Shugeng Gao, Jie He
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2020.584055

Prognostic Value of Genes and Immune Infiltration in Prostate Tumor Microenvironment
Cited by: 16
Author(s): Wenjuan Sun, Hailin Shi, Zhen Yuan, Xia Li, Xuebao Xiang, Xiangfeng Quan, Wenjie Shi, Leiming Jiang
Software Mentions: 3
Published: about 4 years ago

10.1186/s12957-021-02387-z

Comprehensive analysis of the cancer driver genes in breast cancer demonstrates their roles in cancer prognosis and tumor microenvironment
Cited by: 6
Author(s): Xinyue Du, Li Gao, Juan Liu, Chunyan Zhang, Qiong Liu, Hao Wang, Tingsong Chen
Software Mentions: 3
Published: about 3 years ago

10.14814/phy2.14940

Transcriptomic analysis of cardiac gene expression across the life course in male and female mice
Cited by: 6
Author(s): Aykhan Yusifov, Vikram E. Chhatre, Eva K. Koplin, Cortney E. Wilson, Emily E. Schmitt, Kathleen C. Woulfe, Danielle R. Bruns
Software Mentions: 3
Published: over 3 years ago

10.3389/fcell.2021.675555

A Prognostic Ferroptosis-Related lncRNAs Signature Associated With Immune Landscape and Radiotherapy Response in Glioma
Cited by: 49
Author(s): Jianglin Zheng, Zhongqiang Zhou, Yue Qiu, Minjie Wang, Hao Yu, Zhipeng Wu, Xuan Wang, Xueshi Jiang
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-90330-3

ADAMTS12 acts as a tumor microenvironment related cancer promoter in gastric cancer
Cited by: 11
Author(s): Yangming Hou, Yingjuan Xu, Danping Wu
Software Mentions: 3
Published: over 3 years ago

10.3389/fcell.2021.739358

Macrophage-Related SPP1 as a Potential Biomarker for Early Lymph Node Metastasis in Lung Adenocarcinoma
Cited by: 22
Author(s): Bo Dong, Chunli Wu, Lan Huang, Yu Qi
Software Mentions: 3
Published: about 3 years ago

10.3390/cancers13112619

AID Contributes to Accelerated Disease Progression in the TCL1 Mouse Transplant Model for CLL
Cited by: 5
Author(s): Maria Schubert, Franz Josef Gassner, Michael Huemer, Jan Philip Höpner, Е. В. Акимова, Markus J. Steiner, Alexander Egle, Richard Greil, Nadja Zaborsky, Roland Geisberger
Software Mentions: 3
Published: over 3 years ago

10.1186/s13287-020-01934-x

Immunosuppressive effects of mesenchymal stem cells on lung B cell gene expression in LPS-induced acute lung injury
Cited by: 18
Author(s): Bing Feng, Jiaqi Zhu, Yanping Xu, Wenyi Chen, Xinyu Sheng, Xudong Feng, Xiaowei Shi, Jingqi Liu, Qiaoling Pan, Jinfeng Yang, Jiong Yu, Lanjuan Li, Cao H
Software Mentions: 3
Published: about 4 years ago

10.1002/iid3.407

Development of a prognostic index based on immunogenomic landscape analysis in glioma
Cited by: 2
Author(s): Haitao Luo, Chuming Tao, Peng Wang, Jingying Li, Kai Huang, Xiang Yang Zhu
Software Mentions: 3
Published: almost 4 years ago

10.7150/thno.47001

LAMA4 upregulation is associated with high liver metastasis potential and poor survival outcome of Pancreatic Cancer
Cited by: 16
Author(s): Biao Zheng, Jianhua Qu, Kenoki Ohuchida, Haimin Feng, Siew Meng Chong, Zilong Yan, Yicui Piao, Peng Liu, Nan Sheng, Daiki Eguchi, Takao Ohtsuka, Kazuhiro Mizumoto, Zhong Liu, Shazib Pervaiz, Peng Gong, Masafumi Nakamura
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms20215400

Quantitative Phosphoproteomics Reveals System-Wide Phosphorylation Network Altered by Spry in Mouse Mammary Stromal Fibroblasts
Cited by: 6
Author(s): Tiezhu Shi, Lishuang Yao, Ying Han, Piliang Hao, Pengfei Lu
Software Mentions: 3
Published: about 5 years ago

10.3390/microorganisms7040096

Transcriptomic Responses to Thermal Stress and Varied Phosphorus Conditions in Fugacium kawagutii
Cited by: 27
Author(s): Senjie Lin, Liying Yu, Huan Zhang
Software Mentions: 3
Published: over 5 years ago

10.1002/cam4.3739

Bladder cancer cell‐intrinsic PD‐L1 signals promote mTOR and autophagy activation that can be inhibited to improve cytotoxic chemotherapy
Cited by: 19
Author(s): Deyi Zhang, Ryan M. Reyes, Erica Osta, Suresh Kari, Harshita Gupta, Álvaro Padrón, Anand Kornepati, Aravind Kancharla, Xiujie Sun, Yilun Deng, Bogang Wu, Ratna K. Vadlamudi, Rong Li, Robert S. Svatek, Tyler J. Curiel
Software Mentions: 3
Published: over 3 years ago

10.1186/s12935-020-01398-2

Identification of a three-miRNA signature as a novel prognostic model for papillary renal cell carcinoma
Cited by: 2
Author(s): Ge Li, Hongbo Yang, Yong Cheng, Xin Zhao, Xu Li, Rui Jiang
Software Mentions: 3
Published: over 4 years ago

10.1186/s13046-021-02037-y

Molecular features and vulnerabilities of recurrent chordomas
Cited by: 4
Author(s): Carolin Seeling, André Lechel, Michael Svinarenko, Peter Möller, Thomas Barth, Kevin Mellert
Software Mentions: 3
Published: over 3 years ago

10.3389/fphar.2020.559046

Notoginsenoside R1 Protects Against the Acrylamide-Induced Neurotoxicity via Upregulating Trx-1-Mediated ITGAV Expression: Involvement of Autophagy
Cited by: 3
Author(s): Wenjun Wang, Lu Huang, Elizabeth Rosalind Thomas, Yingying Hu, Fancai Zeng, Xiang Li
Software Mentions: 2
Published: about 4 years ago

10.3389/fmolb.2021.728932

RhoA/ROCK-YAP/TAZ Axis Regulates the Fibrotic Activity in Dexamethasone-Treated Human Trabecular Meshwork Cells
Cited by: 15
Author(s): Zhicheng Liu, Shanshan Li, Xiuqing Qian, Lin Li, Haixia Zhang
Software Mentions: 2
Published: about 3 years ago

10.1111/jcmm.16547

Prognostic value of tumour microenvironment‐related genes by TCGA database in rectal cancer
Cited by: 7
Author(s): Chao Li, Tao Liu, Yi Liu, Jiantao Zhang, Didi Zuo
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.604319

Linc00665 Can Predict the Response to Cisplatin-Paclitaxel Neoadjuvant Chemotherapy for Breast Cancer Patients
Cited by: 9
Author(s): Huijuan Dai, Xiaonan Sheng, Rui Sha, Jing Peng, Fan Yang, Liheng Zhou, Yingsong Lin, Yaqian Xu, Shan Zhang, Weiqiang Yin, Jinsong Lu
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/5265444

The Key Ingredient Acacetin in Weishu Decoction Alleviates Gastrointestinal Motility Disorder Based on Network Pharmacology Analysis
Cited by: 4
Author(s): Xuan Guo, Xinhua Yin, Tan Hua-liang, Xiaojuan Wang, Xiao Lin
Software Mentions: 2
Published: about 3 years ago

10.1186/s12935-018-0673-1

MicroRNA-218-5p inhibits cell growth and metastasis in cervical cancer via LYN/NF-κB signaling pathway
Cited by: 28
Author(s): Yunsheng Xu, Qiaojun He, Yiyi Lu, Fengxing Tao, Liang Zhao, Rongying Ou
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22063148

Identification of a Minimal 3-Transcript Signature to Differentiate Viral from Bacterial Infection from Best Genome-Wide Host RNA Biomarkers: A Multi-Cohort Analysis
Cited by: 5
Author(s): Alberto Gómez‐Carballa, Ruth Barral-Arca, Miriam Cebey-López, Xabier Bello, Jacobo Pardo‐Seco, Federico Martinón‐Torres, Antonio Salas
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22157908

Comparative Proteomic and Metabolomic Analysis of Human Osteoblasts, Differentiated from Dental Pulp Stem Cells, Hinted Crucial Signaling Pathways Promoting Osteogenesis
Cited by: 4
Author(s): Slavomíra Nováková, Maksym Danchenko, Terézia Okajčeková, Eva Baranovičová, Andrej Kováč, Marián Grendár, Gábor Beke, Janka Pálešová, Ján Strnádel, Mária Janíčková, Erika Halašová, Henrieta Škovierová
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/6285987

Construction and Investigation of MicroRNA-mRNA Regulatory Network of Gastric Cancer with Helicobacter pylori Infection
Cited by: 1
Author(s): Ping Yang, Junjie Liu, Tian‐Ci Yang, Lei Zhang, Peiyou Gong, Boqing Li, Xiuzhi Zhou
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2020.581733

ITM2A as a Tumor Suppressor and Its Correlation With PD-L1 in Breast Cancer
Cited by: 7
Author(s): Rui Zhang, Tao Xu, Yu Xia, Zhi Wang, Xingrui Li, Wen Chen
Software Mentions: 2
Published: almost 4 years ago

10.1186/s40164-021-00226-1

Pan-cancer analysis reveals tumor-associated macrophage communication in the tumor microenvironment
Cited by: 21
Author(s): Linbang Wang, Tao He, Jingkun Liu, Jiaojiao Tai, Bing Wang, Zhiyu Chen, Zhengxue Quan
Software Mentions: 2
Published: over 3 years ago

10.3389/fphar.2020.591337

Targets of Vitamin C With Therapeutic Potential for Cardiovascular Disease and Underlying Mechanisms: A Study of Network Pharmacology
Cited by: 11
Author(s): Ning Zhu, Bifei Huang, Wenbing Jiang
Software Mentions: 2
Published: almost 4 years ago

10.1042/BSR20204006

The relationship among Girdin DNA methylation, its high expression, and immune infiltration in hepatocellular carcinoma: Clues from in silico analysis
Cited by: 4
Author(s): Cheng Zhang, Ke Yang, Xuefen Lei, Xin Liu, Hai Li, Runjiao Shi, Lin Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2021.666003

Identification and Validation of a Six Immune-Related Genes Signature for Predicting Prognosis in Patients With Stage II Colorectal Cancer
Cited by: 7
Author(s): Xianzhe Li, Minghao Xie, Shi Yin, Zhizhong Xiong, Chaobin Mao, Fengxiang Zhang, Huaxian Chen, Longyang Jin, Ping Lan, Lei Lian
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.103364

Establishment of a novel risk score model by comprehensively analyzing the immunogen database of bladder cancer to indicate clinical significance and predict prognosis
Cited by: 11
Author(s): Lingyun Liu, Jinghai Hu, Yu Wang, Tao Sun, Xiang Zhou, Xinyuan Li, Fuzhe Ma
Software Mentions: 1
Published: over 4 years ago

10.1242/dev.194498

An Irf6-Esrp1/2 regulatory axis controls midface morphogenesis in vertebrates
Cited by: 8
Author(s): Shannon H. Carroll, Claudio Macias Trevino, Edward B. Li, Kenta Kawasaki, N. Eugene Myers, Shawn A Hallett, Nora Alhazmi, Justin Cotney, Russ P. Carstens, Eric C. Liao
Software Mentions: 1
Published: almost 5 years ago

Projects: bioconductor: enrichplot

Papers Mentioning enrichplot 249