bioconductor: edgeR | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0034150

Differential Expression of miRNAs in Colorectal Cancer: Comparison of Paired Tumor Tissue and Adjacent Normal Mucosa Using High-Throughput Sequencing
Cited by: 141
Author(s): Julian Hamfjord, Astrid M. Stangeland, Timothy R. Hughes, Martina L. Skrede, Kjell Magne Tveit, Tone Ikdahl, Elin H. Kure
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0094352

MicroRNA Buffering and Altered Variance of Gene Expression in Response to Salmonella Infection
Cited by: 13
Author(s): Hua Bao, Arun Kommadath, Graham Plastow, Christopher K. Tuggle, Le Luo Guan, Paul Stothard
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-015-2268-8

Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress
Cited by: 55
Author(s): Ratan Chopra, Gloria Burow, Chad Hayes, Yves Emendack, Zhanguo Xin, John J. Burke
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0224765

Identifying resurrection genes through the differentially expressed genes between Selaginella tamariscina (Beauv.) spring and Selaginella moellendorffii Hieron under drought stress
Cited by: 12
Author(s): Wei Gu, Aqin Zhang, Hongmei Sun, Yuchen Gu, Chao Ji, Rong Tian, Jin‐Ao Duan
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0158711

Transition of an Anaerobic Escherichia coli Culture to Aerobiosis: Balancing mRNA and Protein Levels in a Demand-Directed Dynamic Flux Balance Analysis
Cited by: 14
Author(s): Joachim von Wulffen, RecogNice-Team, Oliver Sawodny, Ronny Feuer
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0073783

Inducible Knockdown of Plasmodium Gene Expression Using the glmS Ribozyme
Cited by: 190
Author(s): Parichat Prommana, Chairat Uthaipibull, Chayaphat Wongsombat, Sumalee Kamchonwongpaisan, Yongyuth Yuthavong, Ellen Knuepfer, Anthony A. Holder, Philip Shaw
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0174892

Changes in circulating microRNA levels can be identified as early as day 8 of pregnancy in cattle
Cited by: 29
Author(s): Jason Ioannidis, F.X. Donadeu
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0182866

IFNAR2-dependent gene expression profile induced by IFN-α in Pteropus alecto bat cells and impact of IFNAR2 knockout on virus infection
Cited by: 25
Author(s): Qian Zhang, Leiping Zeng, Peng Zhou, Aaron T. Irving, Shang Li, Shi Z, Lin‐Fa Wang
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0214526

Bacterial translocation in acute lymphocytic leukemia
Cited by: 7
Author(s): Yajing Song, Péter Gyarmati
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0022953

Differential Gene Expression in the Siphonophore Nanomia bijuga (Cnidaria) Assessed with Multiple Next-Generation Sequencing Workflows
Cited by: 42
Author(s): Stefan Siebert, Mark D. Robinson, Sophia C. Tintori, Freya Goetz, Rebecca R. Helm, Stephen A. Smith, Nathan C. Shaner, Steven H. D. Haddock, Casey W. Dunn
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0178119

Gene expression analysis of rocket salad under pre-harvest and postharvest stresses: A transcriptomic resource for Diplotaxis tenuifolia
Cited by: 23
Author(s): Marina Cavaiuolo, Giacomo Cocetta, Natasha D. Spadafora, Carsten T. Müller, Hilary J. Rogers, António Ferrante
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0194998

Homozygous KSR1 deletion attenuates morbidity but does not prevent tumor development in a mouse model of RAS-driven pancreatic cancer
Cited by: 4
Author(s): Elizabeth Germino, Joe Miller, Lauri Diehl, Carter J. Swanson, Steffen Durinck, Zora Modrušan, Jeffrey H. Miner, Andréy S. Shaw
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0130500

A de novo Assembly of the Common Frog (Rana temporaria) Transcriptome and Comparison of Transcription Following Exposure to Ranavirus and Batrachochytrium dendrobatidis
Cited by: 32
Author(s): Stephen J. Price, Trenton W. J. Garner, François Balloux, Chris Ruis, Konrad Paszkiewicz, Karen Moore, Alistair Griffiths
Software Mentions: 1
Published: over 11 years ago

10.1002/path.5551

Large‐scale analysis of <scp>BAP1</scp> expression reveals novel associations with clinical and molecular features of malignant pleural mesothelioma
Cited by: 22
Author(s): Assunta De Rienzo, Lucian R. Chirieac, Yin P. Hung, David T. Severson, Samuel Freyaldenhoven, Corinne E. Gustafson, Nhien Dao, Claire Meyerovitz, Michela E Oster, Roderick V. Jensen, Beow Y. Yeap, Raphael Bueno, William G. Richards
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0072302

Effect of Maternal Methionine Supplementation on the Transcriptome of Bovine Preimplantation Embryos
Cited by: 74
Author(s): Francisco Peñagaricano, A. H. Souza, P.D. Carvalho, Ashley M. Driver, Gambra Rocio, Jenna Kropp Schmidt, Katherine S. Hackbart, D. Luchini, R.D. Shaver, Milo C. Wiltbank, Hasan Khatib
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0162390

Type 3 Fimbriae Encoded on Plasmids Are Expressed from a Unique Promoter without Affecting Host Motility, Facilitating an Exceptional Phenotype That Enhances Conjugal Plasmid Transfer
Cited by: 16
Author(s): Jonas Stenløkke Madsen, Leise Riber, Witold Kot, Alrun Basfeld, Mette Burmølle, Lars Hestbjerg Hansen, Søren J. Sørensen
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0200732

Comparison of transcriptomic landscapes of different lamb muscles using RNA-Seq.
Cited by: 7
Author(s): E. Armstrong, Andrés Iriarte, P. Nicolini, Jorge De los Santos, J. Ithurralde, Alejandro Bielli, G. Bianchi, Francisco Peñagaricano
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0247888

Transcriptional analysis of islets of Langerhans from organ donors of different ages
Cited by: 8
Author(s): Peter Seiron, Anton Stenwall, A. Hedin, Louise Granlund, Jonathan L.S. Esguerra, Petr Volkov, Erik Renström, Olle Korsgren, Marcus Lundberg, Oskar Skog
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0100839

Tissue-Specific Expressed Antibody Variable Gene Repertoires
Cited by: 34
Author(s): Bryan Briney, Jordan R. Willis, Jessica A. Finn, Brett A. McKinney, James E. Crowe
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0215122

Calcium-induced differentiation in normal human colonoid cultures: Cell-cell / cell-matrix adhesion, barrier formation and tissue integrity
Cited by: 24
Author(s): Durga Attili, Shannon D. McClintock, Areeba H. Rizvi, Shailja Pandya, Humza Rehman, Daniyal M. Nadeem, Aliah Richter, Dafydd G. Thomas, Michael K. Dame, D. Kim Turgeon, James Varani, Muhammad N. Aslam
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms19030852

Transcriptome Analysis Identifies a 140 kb Region of Chromosome 3B Containing Genes Specific to Fusarium Head Blight Resistance in Wheat
Cited by: 13
Author(s): Xin Li, Shengyi Zhong, Wanquan Chen, Syeda Akash Fatima, Qianglan Huang, Qing Li, Feiquan Tan, Peigao Luo
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0170085

Differential DNA Methylation Regions in Adult Human Sperm following Adolescent Chemotherapy: Potential for Epigenetic Inheritance
Cited by: 39
Author(s): Margarett Shnorhavorian, Stephen M. Schwartz, Barbara Stansfeld, Ingrid Sadler‐Riggleman, Daniel Beck, Michael K. Skinner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0193665

Comprehensive analysis of small RNAs expressed in developing male strobili of Cryptomeria japonica
Cited by: 9
Author(s): Tokuko Ujino‐Ihara, S. Ueno, Kentaro Uchiyama, Norihiro Futamura
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0160517

Decoding the Regulatory Landscape of Ageing in Musculoskeletal Engineered Tissues Using Genome-Wide DNA Methylation and RNASeq
Cited by: 26
Author(s): Mandy J. Peffers, Katarzyna Goljanek‐Whysall, John A. Collins, Yongxiang Fang, Michael D. Rushton, John Loughlin, Carole J. Proctor, Peter Clegg
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0217507

A urinary extracellular vesicle microRNA biomarker discovery pipeline; from automated extracellular vesicle enrichment by acoustic trapping to microRNA sequencing
Cited by: 17
Author(s): Anson T. Ku, Naveen Ravi, Minjun Yang, Mikael Evander, Thomas Laurell, Hans Lilja, Yvonne Ceder
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0035961

Transcriptome of Protoplasts Reprogrammed into Stem Cells in Physcomitrella patens
Cited by: 38
Author(s): Li Xiao, Liechi Zhang, Yang Ge, Honglin Zhu, Yulong He
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0038298

Genome-Wide MicroRNA Expression Analysis of Clear Cell Renal Cell Carcinoma by Next Generation Deep Sequencing
Cited by: 104
Author(s): Susanne Osanto, Yongjun Qin, Henk P.J. Buermans, Joost Berkers, Evelyne Lerut, Jelle J. Goeman, Hendrik Van Poppel
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0185595

De novo transcriptome sequencing and assembly from apomictic and sexual Eragrostis curvula genotypes
Cited by: 15
Author(s): Ingrid Garbus, José R. Romero, Juan Pablo Selva, María Cielo Pasten, Carolina Chinestra, José Luís Carballo, Diego Zappacosta, Viviana Echenique
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms19030910

In-Silico Integration Approach to Identify a Key miRNA Regulating a Gene Network in Aggressive Prostate Cancer
Cited by: 11
Author(s): Claudia Cava, Gloria Bertoli, Antonio Colaprico, Gianluca Bontempi, Giancarlo Mauri, Isabella Castiglioni
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0231206

Comparative analysis of sugarcane root transcriptome in response to the plant growth-promoting Burkholderia anthina MYSP113
Cited by: 30
Author(s): Mukesh Kumar Malviya, Changning Li, Manoj Kumar Solanki, Rajesh Kumar Singh, Reemon Htun, Pratiksha Singh, Krishan K. Verma, Li‐Tao Yang, Yang–Rui Li
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0186382

Identification of functionally important microRNAs from rice inflorescence at heading stage of a qDTY4.1-QTL bearing Near Isogenic Line under drought conditions
Cited by: 14
Author(s): Boon Huat Cheah, Sudhir Jadhao, Madavan Vasudevan, R Wickneswari V Ratnam, Kalaivani K. Nadarajah
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0200826

BRD4 amplification facilitates an oncogenic gene expression program in high-grade serous ovarian cancer and confers sensitivity to BET inhibitors
Cited by: 43
Author(s): Garrett W. Rhyasen, Yi Yao, Jingwen Zhang, Austin Dulak, Lillian Castriotta, Kelly Jacques, Wei Zhao, Farzin Gharahdaghi, Maureen M. Hattersley, Paul Lyne, Edwin Clark, Michael Zinda, Stephen E. Fawell, Gordon B. Mills, Huawei Chen
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0194765

IFN-λ and microRNAs are important modulators of the pulmonary innate immune response against influenza A (H1N2) infection in pigs
Cited by: 17
Author(s): Louise Brogaard, Lars Erik Larsen, Peter M. H. Heegaard, Christian Anthon, Jan Gorodkin, Ralf Dürrwald, Kerstin Skovgaard
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-021-07751-7

Transcriptomic analysis of shell repair and biomineralization in the blue mussel, Mytilus edulis
Cited by: 9
Author(s): Tejaswi Yarra, Kirti Ramesh, Mark Blaxter, Anne Hüning, Frank Melzner, Melody S. Clark
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0159372

Antennal and Abdominal Transcriptomes Reveal Chemosensory Genes in the Asian Citrus Psyllid, Diaphorina citri
Cited by: 39
Author(s): Zhongzhen Wu, Zuyong He, Shuying Bin, Lei Chen, Qunxin Han, Jintian Lin
Software Mentions: 1
Published: about 10 years ago

10.1186/s12864-019-6351-4

Comparative transcriptomic analysis of surf clams (Paphia undulate) infected with two strains of Vibrio spp. reveals the identity of key immune genes involved in host defense
Cited by: 6
Author(s): Mingjia Yu, Lin Zheng, Xiaobo Wang, Min-Fu Wu, Ming Qi, Wei Fu, Yang Zhang
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms19061810

Differential Expression and Pathway Analysis in Drug-Resistant Triple-Negative Breast Cancer Cell Lines Using RNASeq Analysis
Cited by: 22
Author(s): Safa Shaheen, Febin Fawaz, Shaheen Shah, Dietrich Büsselberg
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0200558

FAK auto-phosphorylation site tyrosine 397 is required for development but dispensable for normal skin homeostasis
Cited by: 8
Author(s): Joel B. Heim, Cera A. McDonald, Saranya P. Wyles, Sindhuja Sominidi‐Damodaran, Edwin J. Squirewell, Ming Li, Catherine Motsonelidze, Ralph T. Böttcher, Jan van Deursen, Alexander Meves
Software Mentions: 1
Published: about 8 years ago

10.1186/s13059-019-1830-0

Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses
Cited by: 152
Author(s): Ciara H. O’Flanagan, Kieran R Campbell, Allen W. Zhang, Farhia Kabeer, Jamie Lim, Justina Biele, Peter Eirew, Daniel Lai, Andrew McPherson, Esther Kong, Cherie Bates, Kelly Borkowski, Matt Wiens, Brittany Hewitson, James Hopkins, Jenifer Pham, Nicholas Ceglia, Richard A. Moore, Andrew J. Mungall, Jessica N. McAlpine, Sohrab P. Shah, Samuel Aparicio
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0187351

Kojic acid-mediated damage responses induce mycelial regeneration in the basidiomycete Hypsizygus marmoreus
Cited by: 10
Author(s): Jinjing Zhang, Hui Chen, Mingjie Chen, Hong Wang, Qian Wang, Xiaoxia Song, Haibo Hao, Zhen Feng
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0130902

Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis
Cited by: 23
Author(s): Yuanhao Zhang, Leahana Rowehl, Julia M. Krumsiek, Erika P. Orner, Nurmohammad Shaikh, Phillip I. Tarr, Erica Sodergren, George M. Weinstock, Edgar C. Boedeker, Xuejian Xiong, John Parkinson, Daniel N. Frank, Ellen Li, Grace Gathungu
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0237744

Transcriptome analysis and comparison reveal divergence between the Mediterranean and the greenhouse whiteflies
Cited by: 1
Author(s): Yujun Wang, Hua-Ling Wang, Xiaowei Wang, Shu‐Sheng Liu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0100477

Transcriptomic Analysis of Prunus domestica Undergoing Hypersensitive Response to Plum Pox Virus Infection
Cited by: 35
Author(s): Bernardo Rodamilans, David San León, Louisa Mühlberger, Thierry Candresse, M. Neumüller, Juan Carlos Oliveros, Juan Antonio Garcı́a
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms19061594

Candidate Genes for Yellow Leaf Color in Common Wheat (Triticum aestivum L.) and Major Related Metabolic Pathways according to Transcriptome Profiling
Cited by: 58
Author(s): Hui-Yu Wu, Narong Shi, Xuyao An, Liu Cong, Hongfei Fu, Lanqing Cao, Yi Feng, Dianjun Sun, Lingli Zhang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0165268

Over Expression of NANOS3 and DAZL in Human Embryonic Stem Cells
Cited by: 19
Author(s): Sarita Panula, Ahmed Reda, Jan-Bernd Stukenborg, Cyril Ramathal, Meena Sukhwani, Halima Albalushi, Daniel Edsgärd, Michiko Nakamura, Olle Söder, Kyle E. Orwig, Shinya Yamanaka, Renee A. Reijo Pera, Outi Hovatta
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms19061626

Oxaloacetate Ameliorates Chemical Liver Injury via Oxidative Stress Reduction and Enhancement of Bioenergetic Fluxes
Cited by: 19
Author(s): Ye Kuang, Xing Han, Mu Xu, Yue Wang, Yuxiang Zhao, Qing Yang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0200210

Transcription factor induced conversion of human fibroblasts towards the hair cell lineage
Cited by: 23
Author(s): Maria B Duran Alonso, Iris Lopez Hernandez, Miguel A. de la Fuente, Javier García‐Sancho, Fernando Giráldez, Thomas Schimmang
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0216294

Sensory receptor repertoire in cyprid antennules of the barnacle Balanus improvisus
Cited by: 8
Author(s): Anna Abramova, Magnus Alm Rosenblad, Anders Blomberg, Tomas Larsson
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0178189

Systematic genomic and translational efficiency studies of uveal melanoma
Cited by: 27
Author(s): Chelsea Place Johnson, Ivana K. Kim, Bita Esmaeli, Ali Amin‐Mansour, Daniel J. Treacy, Scott L. Carter, Eran Hodis, Nikhil Wagle, Sara Seepo, Xiaoxing Yu, Anne Marie Lane, Evangelos S. Gragoudas, Francisca Vázquez, Elizabeth Nickerson, Kristian Cibulskis, Aaron McKenna, Stacey Gabriel, Gad Getz, Eliezer M. Van Allen, Peter A.C. ’t Hoen, Levi A. Garraway, Scott E. Woodman
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pntd.0002402

Sex-Biased Expression of MicroRNAs in Schistosoma mansoni
Cited by: 59
Author(s): A. De Marco, Ana Kozomara, Jerome H. L. Hui, Aidan M. Emery, David Rollinson, Sam Griffiths-Jones, Matthew Ronshaugen
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pntd.0003975

Global Gene Expression Profiling through the Complete Life Cycle of Trypanosoma vivax
Cited by: 31
Author(s): Andrew P. Jackson, Sophie Goyard, Dong Xia, Bernardo J. Foth, Mandy Sanders, Jonathan M. Wastling, Paola Minóprio, Matthew Berriman
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pntd.0009377

Combined gene deletion of dihydrofolate reductase-thymidylate synthase and pteridine reductase in Leishmania infantum
Cited by: 5
Author(s): Arijit Bhattacharya, Philippe Leprohon, Marc Ouellette
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pntd.0006186

Multifaceted functional implications of an endogenously expressed tRNA fragment in the vector mosquito Aedes aegypti
Cited by: 10
Author(s): Matthew W. Eng, Anthony Clemons, Casey Hill, Roberta Engel, David W. Severson, Susanta K. Behura
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pntd.0004634

Analysis on Gene Expression Profile in Oncospheres and Early Stage Metacestodes from Echinococcus multilocularis
Cited by: 28
Author(s): Fuqiang Huang, Zhisheng Dang, Yutaka Suzuki, T Horiuchi, Kinpei Yagi, Hirokazu Kouguchi, Takao Irie, Kyeong-Soon Kim, Yuzaburo Oku
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.9021

Identification of exosomal miRNAs associated with the anthracycline-induced liver injury in postoperative breast cancer patients by small RNA sequencing
Cited by: 14
Author(s): Yue Zhang, Di Wang, Di Shen, Yang Luo, Yi‐Qun Che
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.11781

Atlas of tissue-specific and tissue-preferential gene expression in ecologically and economically significant conifer Pinus sylvestris
Cited by: 5
Author(s): Sandra Cervantes, Jaana Vuosku, Tanja Pyhäjärvi
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.10976

Transcriptome profiling reveals histone deacetylase 1 gene overexpression improves flavonoid, isoflavonoid, and phenylpropanoid metabolism in Arachis hypogaea hairy roots
Cited by: 2
Author(s): Liangchen Su, Shuai Liu, Xing Liu, Baihong Zhang, Meijuan Li, Lidan Zeng, Ling Li
Software Mentions: 1
Published: over 5 years ago

10.1111/acel.12743

<scp>NHR</scp>‐49/<scp>HNF</scp>4 integrates regulation of fatty acid metabolism with a protective transcriptional response to oxidative stress and fasting
Cited by: 61
Author(s): Grace Ying Shyen Goh, Johnathan J Winter, Forum Bhanshali, Kelsie R. S. Doering, Regina Lai, Kayoung Lee, Elizabeth A. Veal, Stefan Taubert
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19082417

In Vivo Analysis of miR-34a Regulated Glucose Metabolism Related Genes in Megalobrama amblycephala
Cited by: 6
Author(s): Linghong Miao, Yan Lin, Xin Huang, Wenjing Pan, Qunlan Zhou, Bo Liu, Mingchun Ren, Xianping Ge, Liangkun Pan
Software Mentions: 1
Published: about 8 years ago

10.1128/IAI.00426-20

An Ixodes scapularis Protein Disulfide Isomerase Contributes to Borrelia burgdorferi Colonization of the Vector
Cited by: 4
Author(s): Yongguo Cao, Connor Rosen, Gunjan Arora, Akash Gupta, Carmen J. Booth, Kristen E. Murfin, Jiří Černý, Alejandro Marín López, Yu-Min Chuang, Xiao‐Tian Tang, Utpal Pal, Aaron M. Ring, Sukanya Narasimhan, Erol Fikrig
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-15-822

Comparative genome analysis of entomopathogenic fungi reveals a complex set of secreted proteins
Cited by: 46
Author(s): Charley Christian Staats, Ângela Junges, Rafael Lucas Muniz Guedes, Claudia Elizabeth Thompson, Guilherme Loss de Morais, Juliano Tomazzoni Boldo, Luiz Gonzaga Paula de Almeida, Fábio Carrer Andreis, Alexandra Lehmkuhl Gerber, Nicolau Sbaraini, Rana Louise de Andrade da Paixão, Leonardo Broetto, Melissa Fontes Landell, Lucélia Santi, Walter O. Beys‐da‐Silva, Carolina Pereira Silveira, Thaiane Rispoli, Éder Silva de Oliveira, Lívia Kmetzsch, Marilene Henning Vainstein, Ana Tereza Ribeiro de Vasconcelos, Augusto Schrank
Software Mentions: 1
Published: almost 12 years ago

10.7717/peerj.10249

Prognostic model of invasive ductal carcinoma of the breast based on differentially expressed glycolysis-related genes
Cited by: 2
Author(s): Xiaoping Li, Qihe Yu, Jishang Chen, Hui Huang, Zhuangsheng Liu, Chengxing Wang, Yuan He, Xin Zhang, Weiwen Li, Chao Li, Jinglin Zhao, Wansheng Long
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.xinn.2020.100052

Regulatory Role of Retinoic Acid in Male Pregnancy of the Seahorse
Cited by: 8
Author(s): Chunyan Li, Yongxin Li, Geng Qin, Zelin Chen, Meng Qu, Bo Zhang, Xue Han, Xin Wang, Pei‐Yuan Qian, Qiang Lin
Software Mentions: 1
Published: almost 6 years ago

10.3390/insects10080245

Genome-Wide Identification of Long Non-Coding RNAs and Their Regulatory Networks Involved in Apis mellifera ligustica Response to Nosema ceranae Infection
Cited by: 30
Author(s): Dafu Chen, Huazhi Chen, Yuguang Du, Dingding Zhou, Suxia Geng, Haipeng Wang, Jieqi Wan, Chuan Xiong, Yusheng Zheng, Rui Guo
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.4276

Development of an RNA interference (RNAi) gene knockdown protocol in the anaerobic gut fungusPecoramyces ruminantiumstrain C1A
Cited by: 17
Author(s): Shelby Calkins, Nicole C. Elledge, Katherine E. Mueller, Stephen M. Marek, Matthew Brian Couger, Mostafa S. Elshahed, Noha H. Youssef
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.9262

Identification of gene expression and DNA methylation of SERPINA5 and TIMP1 as novel prognostic markers in lower-grade gliomas
Cited by: 8
Author(s): Wenjing Zeng, Yang Yi, Zhipeng Wen, Peng Chen, Xiaoping Chen, Zhicheng Gong
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.2520

A transcriptomic scan for potential candidate genes involved in osmoregulation in an obligate freshwater palaemonid prawn (Macrobrachium australiense)
Cited by: 26
Author(s): Moshtaghi Azam, Md. Lifat Rahi, Tuan Viet Nguyen, Peter B. Mather, David A. Hurwood
Software Mentions: 1
Published: almost 10 years ago

Projects: bioconductor: edgeR

Science Score: 100/100

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Papers Mentioning edgeR 6,568