bioconductor: edgeR | Projects | Ecosyste.ms: Papers

10.3389/fmolb.2018.00079

Systematic Analysis of Gene Expression Profiles Controlled by hnRNP Q and hnRNP R, Two Closely Related Human RNA Binding Proteins Implicated in mRNA Processing Mechanisms
Cited by: 10
Author(s): Sara Cappelli, Maurizio Romano, Emanuele Buratti
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2164-13-278

Integrated analysis of microRNA expression and mRNA transcriptome in lungs of avian influenza virus infected broilers
Cited by: 86
Author(s): Ying Wang, Vinayak Brahmakshatriya, Blanca Lupiani, Sanjay M. Reddy, Benjamin Soibam, Ashley Benham, Preethi H. Gunaratne, Hsiao‐Ching Liu, Nares Trakooljul, Nancy H. Ing, Ron Okimoto, Huaijun Zhou
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-017-11456-x

Antennal transcriptome and expression analyses of olfactory genes in the sweetpotato weevil Cylas formicarius
Cited by: 25
Author(s): Shuying Bin, Meng-Qiu Qu, Xinhua Pu, Zhongzhen Wu, Jintian Lin
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2021.705253

Targeted Transcriptomics of Frog Virus 3 in Infected Frog Tissues Reveal Non-Coding Regulatory Elements and microRNAs in the Ranaviral Genome and Their Potential Interaction with Host Immune Response
Cited by: 5
Author(s): Yun Tian, Collins N. Khwatenge, Jiuyi Li, Francisco De Jesús Andino, Jacques Robert, Yongming Sang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-11588-0

Comparative transcriptome analysis of axillary buds in response to the shoot branching regulators gibberellin A3 and 6-benzyladenine in Jatropha curcas
Cited by: 36
Author(s): Jun Ni, Miaomiao Zhao, Maosheng Chen, Bang-Zhen Pan, Yongfu Tao, Zeng-Fu Xu
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-10675-6

Toxoplasma Modulates Signature Pathways of Human Epilepsy, Neurodegeneration & Cancer
Cited by: 83
Author(s): Huân M. Ngô, Ying Zhou, Hernán Lorenzi, Kai Wang, Taek Kyun Kim, Yong Zhou, Kamal El Bissati, Ernest Mui, Laura Fraczek, Seesandra V. Rajagopala, Craig W. Roberts, Fiona L. Henriquez, Alexandre Montpetit, Jenefer M. Blackwell, Sarra E. Jamieson, Kelsey Wheeler, Ian J. Begeman, Carlos Andrés Naranjo Galvis, Ney Alliey‐Rodriguez, Roderick G. Davis, Liliana Soroceanu, Charles S. Cobbs, Dennis A. Steindler, Kenneth M. Boyer, A. Gwendolyn Noble, Charles N. Swisher, Peter Heydemann, Peter Rabiah, Shawn Withers, Patricia Soteropoulos, Leroy Hood, Rima McLeod
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2019.00265

Transcriptome Profiles of Human Visceral Adipocytes in Obesity and Colorectal Cancer Unravel the Effects of Body Mass Index and Polyunsaturated Fatty Acids on Genes and Biological Processes Related to Tumorigenesis
Cited by: 23
Author(s): Manuela Del Cornò, Antonella Baldassarre, Enrica Calura, Lucia Conti, Paolo Martini, Chiara Romualdi, Rosaria Varı́, Beatrice Scazzocchio, Massimo D’Archivio, Andrea Masotti, Sandra Gessani
Software Mentions: 1
Published: over 7 years ago

10.1186/s12935-021-01814-1

Identification of four genes and biological characteristics of esophageal squamous cell carcinoma by integrated bioinformatics analysis
Cited by: 13
Author(s): Yexun Song, Wang Xy, Fengjun Wang, Xiaowei Peng, Peiyu Li, Shaojun Liu, Decai Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2014.00396

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis
Cited by: 48
Author(s): Kirsten E. McLoughlin, Nicolas C. Nalpas, Kévin Rue-Albrecht, John A. Browne, David A. Magee, Kate E. Killick, Stephen D. E. Park, Karsten Hokamp, Kieran G. Meade, Cliona O’Farrelly, Eamonn Gormley, Stephen V. Gordon, David E. MacHugh
Software Mentions: 1
Published: about 12 years ago

10.1186/s12864-015-1555-8

An empirical strategy to detect bacterial transcript structure from directional RNA-seq transcriptome data
Cited by: 10
Author(s): Yejun Wang, Keith D. MacKenzie, Aaron P. White
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-017-12025-y

Molecular dissection of transcriptional reprogramming of steviol glycosides synthesis in leaf tissue during developmental phase transitions in Stevia rebaudiana Bert
Cited by: 47
Author(s): Gopal Singh, Gagandeep Singh, Pradeep Singh, Rajni Parmar, Navgeet Paul, Radhika Vashist, Mohit Kumar Swarnkar, Ashok Kumar, Sanatsujat Singh, Anil Kumar Singh, Sanjay Kumar, Ram Kumar Sharma
Software Mentions: 1
Published: about 9 years ago

10.1186/s12935-019-1074-9

Identifying a ten-microRNA signature as a superior prognosis biomarker in colon adenocarcinoma
Cited by: 15
Author(s): Rong Ma, Yimeng Zhao, Miao He, Hongfeng Zhao, Yifan Zhang, Shubo Zhou, Mengcong Gao, Di Di, Jue Wang, Jian Ding, Minjie Wei
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-017-4095-6

Dual RNA-seq reveals no plastic transcriptional response of the coccidian parasite Eimeria falciformis to host immune defenses
Cited by: 19
Author(s): Totta Ehret, Simone Spork, Christoph Dieterich, Richard Lucius, Emanuel Heitlinger
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2020.01240

Neonatal Diet Impacts Circulatory miRNA Profile in a Porcine Model
Cited by: 4
Author(s): Laura E. Carr, Anne K. Bowlin, Ahmed A. Elolimy, Stephanie D. Byrum, Charity L. Washam, Christopher E. Randolph, Stewart L. MacLeod, Laxmi Yeruva
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-017-12875-6

Membrane Trafficking Modulation during Entamoeba Encystation
Cited by: 11
Author(s): Emily K. Herman, Maria A. Siegesmund, Michael Bottery, Ronny van Aerle, Maulood Mohammed Shather, Elisabet Caler, Joel B. Dacks, Mark van der Giezen
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12537-7

Dynamic mRNA and miRNA expression analysis in response to hypoxia and reoxygenation in the blunt snout bream (Megalobrama amblycephala)
Cited by: 17
Author(s): Shengming Sun, Fujun Xuan, Xianping Ge, Jian Zhu, Wuxiao Zhang
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2020.01602

Systemic Sclerosis Perturbs the Architecture of the Immunome
Cited by: 10
Author(s): Bhairav Paleja, Andrea Low, Pavanish Kumar, Suzan Saidin, Ahmad Lajam, Sharifah Nur Hazirah, Camillus Chua, Lai Li Yun, Salvatore Albani
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2019.02888

Mycobacterium abscessus—Bronchial Epithelial Cells Cross-Talk Through Type I Interferon Signaling
Cited by: 15
Author(s): Chongxu Zhang, Huda Asif, Gregory E. Holt, Anthony J. Griswold, Michael Campos, P.A. Bejarano, Nevis Fregien, Mehdi Mirsaeidi
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12935-019-1040-6

Silencing expression of PHF14 in glioblastoma promotes apoptosis, mitigates proliferation and invasiveness via Wnt signal pathway
Cited by: 9
Author(s): Shuai Wu, Chen Luo, Fengjiao Li, Nazia Hameed, Qiu-yan Jin, Jie Zhang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2020.592569

Helpless Priming Sends CD8+ T Cells on the Road to Exhaustion
Cited by: 23
Author(s): Julia Busselaar, Sun Tian, Hans van Eenennaam, Jannie Borst
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-14673-6

Epigenetics and adaptive phenotypic variation between habitats in an asexual snail
Cited by: 50
Author(s): Jennifer L. M. Thorson, Mark W. Smithson, Daniel Beck, Ingrid Sadler‐Riggleman, Eric Nilsson, Mark F. Dybdahl, Michael K. Skinner
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2016.00670

Regulation of Marginal Zone B-Cell Differentiation by MicroRNA-146a
Cited by: 22
Author(s): Jennifer K. King, Nolan Ung, May Paing, Jorge R. Contreras, Michael O. Alberti, Thilini R. Fernando, Kelvin Zhang, Matteo Pellegrini, Dinesh S. Rao
Software Mentions: 1
Published: over 9 years ago

10.3389/fimmu.2021.729776

The Molecular Mechanism of Multiple Organ Dysfunction and Targeted Intervention of COVID-19 Based on Time-Order Transcriptomic Analysis
Cited by: 15
Author(s): Miao Zou, Xiaoyun Su, Luoying Wang, Xingcheng Yi, Yue Qiu, Xirui Yin, Xuan Zhou, Xinhui Niu, Liuli Wang, Manman Su
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-14736-8

Differential gene expression of Australian Cricotopus draysoni (Diptera: Chironomidae) populations reveals seasonal association in detoxification gene regulation
Cited by: 5
Author(s): Matt N. Krosch, Litticia M. Bryant, Sue Vink
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2021.688294

Macrophage Polarization Modulated by Porcine Circovirus Type 2 Facilitates Bacterial Coinfection
Cited by: 6
Author(s): Wen Zhang, Zhendong Fu, Hongyan Yin, Qin Han, Wenhui Fan, Fangkun Wang, Yue Shang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-13999-5

The non-invasive exfoliated transcriptome (exfoliome) reflects the tissue-level transcriptome in a mouse model of NSAID enteropathy
Cited by: 19
Author(s): Canaan Whitfield-Cargile, Noah D. Cohen, Kejun He, Ivan Ivanov, Jennifer S. Goldsby, Ana M. Chamoun‐Emanuelli, Brad R. Weeks, Laurie A. Davidson, Robert S. Chapkin
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2021.703632

A Biological Circuit Involving Mef2c, Mef2d, and Hdac9 Controls the Immunosuppressive Functions of CD4+Foxp3+ T-Regulatory Cells
Cited by: 4
Author(s): Eros Di Giorgio, Liqing Wang, Yan Xiong, Lanette M Christensen, Tatiana Akimova, Rongxiang Han, Arabinda Samanta, Matteo Trevisanut, Claudio Brancolini, Ulf H. Beier, Wayne W. Hancock
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-14808-9

Antibiotics induce polarization of pleural macrophages to M2-like phenotype in patients with tuberculous pleuritis
Cited by: 13
Author(s): Sisi Wang, Jian Zhang, Liyan Sui, Hao Xu, Qianling Piao, Ying Liu, Xiangping Qu, Ying Sun, Lei Song, Dan Li, Liping Peng, Shucheng Hua, Guangan Hu, Jianzhu Chen
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2020.02191

Human Chondrocyte Activation by Toxins From Premolis semirufa, an Amazon Rainforest Moth Caterpillar: Identifying an Osteoarthritis Signature
Cited by: 4
Author(s): Isadora Maria Villas-Boas, Giselle Pidde, Flávio Lichtenstein, Ana Tung Ching Ching, Inácio L.M. Junqueira-de-Azevedo, Carlos DeOcesano-Pereira, Carlos Eduardo Madureira Trufen, Ana Marisa Chudzinski‐Tavassi, Kátia L.P. Morais, Denise V. Tambourgi
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2020.01064

Different Exosomal microRNA Profile in Aquaporin-4 Antibody Positive Neuromyelitis Optica Spectrum Disorders
Cited by: 7
Author(s): Chen Chen, Yunting Wu, Miaochang Li, Chun-Ping Chu, Yipeng Zhao, Xiaobo Sun, Yuge Wang, Chunxin Liu, Haotian Wu, Xiaonan Zhong, Allan G. Kermode, Lisheng Peng
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20143582

In Silico Analysis of Gene Expression Change Associated with Copy Number of Enhancers in Pancreatic Adenocarcinoma
Cited by: 12
Author(s): Rajesh Kumar, Sumeet Patiyal, Vinod Kumar, Gandharva Nagpal, Gajendra P. S. Raghava
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14913-9

Differential transcriptome regulation by 3,5-T2 and 3′,3,5-T3 in brain and liver uncovers novel roles for thyroid hormones in tilapia
Cited by: 16
Author(s): Arturo Olverá, Christopher J. Martyniuk, Nicolas Buisine, Verónica Jiménez-Jacinto, Alejandro Sánchez-Flores, Laurent M. Sachs, Aurea Orozco
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2021.722500

Transcriptional Changes in Pulmonary Phagocyte Subsets Dictate the Outcome Following Interaction With The Fungal Pathogen Cryptococcus neoformans
Cited by: 4
Author(s): Ashlee Hawkins, Brenden F. Determann, Benjamin N. Nelson, Karen L. Wozniak
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-017-15699-6

Transcriptomic analysis of the regulation of stalk development in flowering Chinese cabbage (Brassica campestris) by RNA sequencing
Cited by: 17
Author(s): Xinmin Huang, Yuling Lei, Hongling Guan, Yanwei Hao, Houcheng Liu, Guangwen Sun, Riyuan Chen, Shiwei Song
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12864-016-2552-2

De novo analysis of transcriptome reveals genes associated with leaf abscission in sugarcane (Saccharum officinarum L.)
Cited by: 43
Author(s): Ming Li, Zhaoxu Liang, Yuan Zeng, Yan Ji, Kai–Chao Wu, Jun Liang, Shikun He, Guanyu Wang, Zhanghong Mo, Feiquan Tan, Li Song, Wang LunWang
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2021.698983

Comparative Transcriptomic Analysis Reveals the Immunosuppressive Targets of Mesalazine in Dextran Sulfate Sodium-Induced Ulcerative Colitis
Cited by: 1
Author(s): Rong Li, Lin Cheng, Qi Wang, Liming Zhou
Software Mentions: 1
Published: about 5 years ago

10.1098/rsob.140024

Sex-biased expression of microRNAs in<i>Drosophila melanogaster</i>
Cited by: 38
Author(s): A. De Marco
Software Mentions: 1
Published: over 12 years ago

10.3389/fgene.2021.635599

Comparative Small RNA Profiling and Functional Exploration on Wheat With High- and Low-Cadmium Accumulation
Cited by: 6
Author(s): Yuqing Liu, Xudong Wang, Leyi Yuan, Yuxiang Liu, Tong Shen, Yunhua Zhang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-16611-y

OCT4 supports extended LIF-independent self-renewal and maintenance of transcriptional and epigenetic networks in embryonic stem cells
Cited by: 10
Author(s): Runsheng He, Besa Xhabija, Batool Al‐Qanber, Benjamin L. Kidder
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms20174117

Transcriptome Profiling Provides Insight into the Genes in Carotenoid Biosynthesis during the Mesocarp and Seed Developmental Stages of Avocado (Persea americana)
Cited by: 17
Author(s): Yu Ge, Zhihao Cheng, Xiongyuan Si, Wei Ma, Lin Tan, Xiaoping Zang, Bin Wu, Zining Xu, Nan Wang, Zhaoxi Zhou, Xiao Lin, Xiangshu Dong, Rulin Zhan
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-16472-5

Identification of a histone family gene signature for predicting the prognosis of cervical cancer patients
Cited by: 42
Author(s): Xiaofang Li, Run Tian, Hugh Gao, Yongkang Yang, Bryan R.G. Williams, Michael P. Gantier, Nigel A.J. McMillan, Dakang Xu, Yiqun Hu, Yue Gao
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-16930-0

MALE STERILE6021 (MS6021) is required for the development of anther cuticle and pollen exine in maize
Cited by: 27
Author(s): Youhui Tian, Senlin Xiao, Juan Liu, Yamuna Somaratne, Hua Zhang, Mingming Wang, Huairen Zhang, Li Zhao, Huabang Chen
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-17140-4

Transcriptome analysis of watermelon (Citrullus lanatus) fruits in response to Cucumber green mottle mosaic virus (CGMMV) infection
Cited by: 41
Author(s): Xiaodong Li, Mengnan An, Zihao Xia, Xiaojiao Bai, Yuanhua Wu
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms20194933

Transforming Growth Factor-β1 Selectively Recruits microRNAs to the RNA-Induced Silencing Complex and Degrades CFTR mRNA under Permissive Conditions in Human Bronchial Epithelial Cells
Cited by: 13
Author(s): Nilay Mitash, Fangping Mu, Joshua E Donovan, Michael M. Myerburg, Sarangarajan Ranganathan, Catherine M. Greene, Agnieszka Swiatecka‐Urban
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-021-07402-x

Impacts of fludioxonil resistance on global gene expression in the necrotrophic fungal plant pathogen Sclerotinia sclerotiorum
Cited by: 6
Author(s): Akeem Owolabi Taiwo, Lincoln A. Harper, Mark Derbyshire
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20205172

Novel Pituitary Actions of Epidermal Growth Factor: Receptor Specificity and Signal Transduction for UTS1, EGR1, and MMP13 Regulation by EGF
Cited by: 5
Author(s): Qiongyao Hu, Shaohua Xu, Ya Cheng, Jingyi Jia, Lingling Zhou, Guangfu Hu
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17751-x

The transcriptome of Mycobacterium tuberculosis in a lipid-rich dormancy model through RNAseq analysis
Cited by: 34
Author(s): Diana A. Aguilar-Ayala, Laurentijn Tilleman, Filip Van Nieuwerburgh, Dieter Deforce, Juan Carlos Palomino, Peter Vandamme, Jorge A. González-y-Merchand, Anandi Martin
Software Mentions: 1
Published: almost 9 years ago

10.3389/fgene.2021.667877

Leveraging Methylation Alterations to Discover Potential Causal Genes Associated With the Survival Risk of Cervical Cancer in TCGA Through a Two-Stage Inference Approach
Cited by: 7
Author(s): Jinhui Zhang, Haojie Lu, Shuo Zhang, Ting Wang, Huashuo Zhao, Fengjun Guan, Ping Zeng
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.617872

Transcriptome Analyses Identify an RNA Binding Protein Related Prognostic Model for Clear Cell Renal Cell Carcinoma
Cited by: 8
Author(s): Yue Wu, Wa Xian, Huan Feng, Bintao Hu, Bo Liu, Yang Luan, Yajun Ruan, Xiaohui Liu, Zhuo Liu, Shaogang Wang, Jihong Liu, Tao Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.607238

The TP53-Related Signature Predicts Immune Cell Infiltration, Therapeutic Response, and Prognosis in Patients With Esophageal Carcinoma
Cited by: 7
Author(s): Hongpan Zhang, Zheng Huang, Yangguang Song, Zhihao Yang, Qi Shi, Kaige Wang, Zhiyu Zhang, Zheng Lv, Xiaobin Cui, Feng Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.674856

LncRNA SOX2-OT/miR-30d-5p/PDK1 Regulates PD-L1 Checkpoint Through the mTOR Signaling Pathway to Promote Non-small Cell Lung Cancer Progression and Immune Escape
Cited by: 14
Author(s): Zhoumiao Chen, Zhao Chun-hua, Shaohua Xu, Qiang Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.00273

HSD17B4, ACAA1, and PXMP4 in Peroxisome Pathway Are Down-Regulated and Have Clinical Significance in Non-small Cell Lung Cancer
Cited by: 12
Author(s): Xiuzhi Zhang, Hongmei Yang, Jinzhong Zhang, Fenglan Gao, Liping Dai
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-18607-0

Differentially expressed microRNAs between cattleyak and yak testis
Cited by: 23
Author(s): Cheng Xu, Shan Wu, Wangsheng Zhao, TserangDonko Mipam, Jingbo Liu, Wenjing Liu, Chuanping Yi, Mujahid Ali Shah, Shumin Yu, Xin Cai
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms20205069

Renal Artery Stenosis Alters Gene Expression in Swine Scattered Tubular-Like Cells
Cited by: 7
Author(s): Arash Aghajani Nargesi, Xiang Yang Zhu, Yuanhang Liu, Hui Tang, Kyra L. Jordan, Lilach O. Lerman, Alfonso Eirin
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2019.00409

Dynamic Transcriptome Analysis Reveals Potential Long Non-coding RNAs Governing Postnatal Pineal Development in Pig
Cited by: 8
Author(s): Yalan Yang, Rong Zhou, Wentong Li, Ying Liu, Yanmin Zhang, Ai Hong, Hua Li, Kui Li
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-19200-9

Maternal whole blood cell miRNA-340 is elevated in gestational diabetes and inversely regulated by glucose and insulin
Cited by: 37
Author(s): Laura Stirm, Peter Huypens, Steffen Sass, Richa Batra, Louise Fritsche, Sara Y. Brucker, Harald Abele, Anita M. Hennige, Fabian J. Theis, Johannes Beckers, Martin Hrabé de Angelis, Andreas Fritsche, Hans‐Ulrich Häring, Harald Staiger
Software Mentions: 1
Published: over 8 years ago

10.1186/s12935-021-01820-3

miR-129-5p inhibits clear cell renal cell carcinoma cell proliferation, migration and invasion by targeting SPN
Cited by: 6
Author(s): Bin Gao, Limin Wang, Na Zhang, Miaomiao Han, Yubo Zhang, Huancai Liu, Dawei Sun, Xiaolong Xiao, Yifei Liu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-19837-6

Persistent activation of interlinked type 2 airway epithelial gene networks in sputum-derived cells from aeroallergen-sensitized symptomatic asthmatics
Cited by: 15
Author(s): Anya C. Jones, Niamh M. Troy, Elisha White, Elysia M. Hollams, Alexander M. Gout, Kak-Ming Ling, Anthony Kicic, Stephen M. Stick, Peter D. Sly, Patrick G. Holt, Graham L. Hall, Anthony Bosco
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-19954-2

Different milk diets have substantial effects on the jejunal mucosal immune system of pre-weaning calves, as demonstrated by whole transcriptome sequencing
Cited by: 18
Author(s): H.M. Hammon, D. Frieten, C. Gerbert, Christian Koch, G. Dusel, Rosemarie Weikard, Christa Kühn
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2016.00191

Epigenetic DNA Methylation Profiling with MSRE: A Quantitative NGS Approach Using a Parkinson's Disease Test Case
Cited by: 9
Author(s): Adam G. Marsh, Matthew T. Cottrell, Morton F. Goldman
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12935-021-02001-y

CircRNA NALCN acts as an miR-493-3p sponge to regulate PTEN expression and inhibit glioma progression
Cited by: 10
Author(s): Yi Liu, Simin Chen, Gang Peng, Yixiang Liao, Xue‐Gong Fan, Zuping Zhang, Chenfu Shen
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.577000

Exploration of Sorafenib Influences on Gene Expression of Hepatocellular Carcinoma
Cited by: 0
Author(s): Huancheng Wang, Jia Liu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2019.00929

Transcriptome Analysis Reveals That Alfalfa Promotes Rumen Development Through Enhanced Metabolic Processes and Calcium Transduction in Hu Lambs
Cited by: 9
Author(s): Bin Yang, Hongwei Chen, Jiawen Cao, Bo He, Shanshan Wang, Yang Luo, Jiakun Wang
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20235893

An Integrated Analysis of the Rice Transcriptome and Metabolome Reveals Root Growth Regulation Mechanisms in Response to Nitrogen Availability
Cited by: 39
Author(s): Xin Wei, Lina Zhang, Wenzhong Zhang, Jiping Gao, Jun Yi, Xiaoxi Zhen, Min Du, Yanze Zhao, Liqiang Chen
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21525-4

Molecular characterization of colorectal adenomas with and without malignancy reveals distinguishing genome, transcriptome and methylome alterations
Cited by: 35
Author(s): Brooke R. Druliner, Panwen Wang, Taejeong Bae, Saurabh Baheti, Seth W. Slettedahl, Douglas W. Mahoney, Nikolaos Vasmatzis, Hang Xu, Min‐Soo Kim, Matthew A. Bockol, Daniel R. O’Brien, Diane E. Grill, Nathaniel D. Warner, Miguel Munoz-Gomez, Kimberlee Kossick, Ruth A. Johnson, Mohamad Mouchli, Donna Felmlee-Devine, Jill Washechek-Aletto, Thomas C. Smyrk, Ann L. Oberg, Junwen Wang, Nicholas Chia, Alexej Abyzov, David A. Ahlquist, Lisa A. Boardman
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2020.00494

Quantitative Estimation of Oxidative Stress in Cancer Tissue Cells Through Gene Expression Data Analyses
Cited by: 6
Author(s): Liyang Liu, Haining Cui, Ying Xu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-021-02075-8

Elevated exosome-derived miRNAs predict osimertinib resistance in non-small cell lung cancer
Cited by: 24
Author(s): Xinying Li, Cen Chen, Zimu Wang, Jiaxin Liu, Wei Sun, Kaikai Shen, Lv Y, Suhua Zhu, Ping Zhan, Tangfeng Lv, Yong Song
Software Mentions: 1
Published: about 5 years ago

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Papers Mentioning edgeR 6,568