bioconductor: edgeR | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-11588-0

Comparative transcriptome analysis of axillary buds in response to the shoot branching regulators gibberellin A3 and 6-benzyladenine in Jatropha curcas
Cited by: 36
Author(s): Jun Ni, Miaomiao Zhao, Maosheng Chen, Bang-Zhen Pan, Yongfu Tao, Zeng-Fu Xu
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-10675-6

Toxoplasma Modulates Signature Pathways of Human Epilepsy, Neurodegeneration & Cancer
Cited by: 83
Author(s): Huân M. Ngô, Ying Zhou, Hernán Lorenzi, Kai Wang, Taek Kyun Kim, Yong Zhou, Kamal El Bissati, Ernest Mui, Laura Fraczek, Seesandra V. Rajagopala, Craig W. Roberts, Fiona L. Henriquez, Alexandre Montpetit, Jenefer M. Blackwell, Sarra E. Jamieson, Kelsey Wheeler, Ian J. Begeman, Carlos Andrés Naranjo Galvis, Ney Alliey‐Rodriguez, Roderick G. Davis, Liliana Soroceanu, Charles S. Cobbs, Dennis A. Steindler, Kenneth M. Boyer, A. Gwendolyn Noble, Charles N. Swisher, Peter Heydemann, Peter Rabiah, Shawn Withers, Patricia Soteropoulos, Leroy Hood, Rima McLeod
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.15190

Harnessing RNA sequencing for global, unbiased evaluation of two new adjuvants for dendritic-cell immunotherapy
Cited by: 11
Author(s): Till S.M. Mathan, Johannes Textor, Annette E. Sköld, Inge Reinieren-Beeren, Tom van Oorschot, Mareke Brüning, Carl G. Figdor, Sonja I. Buschow, Ghaith Bakdash, I. Jolanda M. de Vries
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-12025-y

Molecular dissection of transcriptional reprogramming of steviol glycosides synthesis in leaf tissue during developmental phase transitions in Stevia rebaudiana Bert
Cited by: 47
Author(s): Gopal Singh, Gagandeep Singh, Pradeep Singh, Rajni Parmar, Navgeet Paul, Radhika Vashist, Mohit Kumar Swarnkar, Ashok Kumar, Sanatsujat Singh, Anil Kumar Singh, Sanjay Kumar, Ram Kumar Sharma
Software Mentions: 1
Published: about 9 years ago

10.3390/cancers13153854

Quantitative Assessment and Prognostic Associations of the Immune Landscape in Ovarian Clear Cell Carcinoma
Cited by: 9
Author(s): Saira Khalique, Sarah H. Nash, David Mansfield, Julian Wampfler, Ayoma D. Attygale, Katherine Vroobel, Harriet Kemp, Richard Buus, Hannah Cottom, Ioannis Roxanis, Thomas R. Jones, Katharina von Loga, Dipa Begum, Naomi Guppy, Pradeep Ramagiri, Kerry Fenwick, Nik Matthews, Michael Hubank, Christopher J. Lord, Syed Haider, Alan Melcher, Susana Banerjee, Rachael Natrajan
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-12875-6

Membrane Trafficking Modulation during Entamoeba Encystation
Cited by: 11
Author(s): Emily K. Herman, Maria A. Siegesmund, Michael Bottery, Ronny van Aerle, Maulood Mohammed Shather, Elisabet Caler, Joel B. Dacks, Mark van der Giezen
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-12537-7

Dynamic mRNA and miRNA expression analysis in response to hypoxia and reoxygenation in the blunt snout bream (Megalobrama amblycephala)
Cited by: 17
Author(s): Shengming Sun, Fujun Xuan, Xianping Ge, Jian Zhu, Wuxiao Zhang
Software Mentions: 1
Published: about 9 years ago

10.3390/cancers11111634

PIK3CA Cooperates with KRAS to Promote MYC Activity and Tumorigenesis via the Bromodomain Protein BRD9
Cited by: 23
Author(s): Catherine Bell, Philipp Raffeiner, Jonathan R. Hart, Peter K. Vogt
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers12061451

RKIP Regulates Differentiation-Related Features in Melanocytic Cells
Cited by: 7
Author(s): Cristina Penas, Aintzane Apraiz, Iraia Muñoa, Yoana Arroyo-Berdugo, Javier Rasero, Pilar Ariadna Ezkurra, Verónica Velasco, Nerea Subirán, Anja‐Katrin Bosserhoff, Santos Alonso, Aintzane Asumendi, María Dolores Boyano
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-14673-6

Epigenetics and adaptive phenotypic variation between habitats in an asexual snail
Cited by: 50
Author(s): Jennifer L. M. Thorson, Mark W. Smithson, Daniel Beck, Ingrid Sadler‐Riggleman, Eric Nilsson, Mark F. Dybdahl, Michael K. Skinner
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-14736-8

Differential gene expression of Australian Cricotopus draysoni (Diptera: Chironomidae) populations reveals seasonal association in detoxification gene regulation
Cited by: 5
Author(s): Matt N. Krosch, Litticia M. Bryant, Sue Vink
Software Mentions: 1
Published: about 9 years ago

10.3389/fcell.2020.579708

Transcriptome Analysis Reveals the Potential Role of Long Non-coding RNAs in Mammary Gland of Yak During Lactation and Dry Period
Cited by: 6
Author(s): Xiaoyun Wu, Xiaofang Zhou, Lin Xiong, Jie Pei, Xixi Yao, Chunnian Liang, Pengjia Bao, Min Chen, Xian Guo, Ping Yan
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-13999-5

The non-invasive exfoliated transcriptome (exfoliome) reflects the tissue-level transcriptome in a mouse model of NSAID enteropathy
Cited by: 19
Author(s): Canaan Whitfield-Cargile, Noah D. Cohen, Kejun He, Ivan Ivanov, Jennifer S. Goldsby, Ana M. Chamoun‐Emanuelli, Brad R. Weeks, Laurie A. Davidson, Robert S. Chapkin
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-14808-9

Antibiotics induce polarization of pleural macrophages to M2-like phenotype in patients with tuberculous pleuritis
Cited by: 13
Author(s): Sisi Wang, Jian Zhang, Liyan Sui, Hao Xu, Qianling Piao, Ying Liu, Xiangping Qu, Ying Sun, Lei Song, Dan Li, Liping Peng, Shucheng Hua, Guangan Hu, Jianzhu Chen
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.15947

UBE2T knockdown inhibits gastric cancer progression
Cited by: 46
Author(s): Changjiang Luo, Yunyi Yao, Zeyuan Yu, Huinian Zhou, Ling‐Yun Guo, Junqiang Zhang, Hongtai Cao, Genyuan Zhang, Yumin Li, Jiao Zhang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-14913-9

Differential transcriptome regulation by 3,5-T2 and 3′,3,5-T3 in brain and liver uncovers novel roles for thyroid hormones in tilapia
Cited by: 16
Author(s): Arturo Olverá, Christopher J. Martyniuk, Nicolas Buisine, Verónica Jiménez-Jacinto, Alejandro Sánchez-Flores, Laurent M. Sachs, Aurea Orozco
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12967-020-02639-8

Plasma exosome-derived microRNAs expression profiling and bioinformatics analysis under cross-talk between increased low-density lipoprotein cholesterol level and ATP-sensitive potassium channels variant rs1799858
Cited by: 7
Author(s): Cheng Liu, Yanxian Lai, Songsong Ying, Junfang Zhan, Yan Shen
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-15699-6

Transcriptomic analysis of the regulation of stalk development in flowering Chinese cabbage (Brassica campestris) by RNA sequencing
Cited by: 17
Author(s): Xinmin Huang, Yuling Lei, Hongling Guan, Yanwei Hao, Houcheng Liu, Guangwen Sun, Riyuan Chen, Shiwei Song
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12967-018-1739-5

NovelmiRNA-25 inhibits AMPD2 in peripheral blood mononuclear cells of patients with systemic lupus erythematosus and represents a promising novel biomarker
Cited by: 26
Author(s): Gangqiang Guo, Huijing Wang, Xinyu Shi, Lele Ye, Kai Wu, Kuan‐Yu Lin, Sisi Ye, Baoqing Li, Huidi Zhang, Qiaoai Lin, Shuang Ye, Xiangyang Xue, Chaosheng Chen
Software Mentions: 1
Published: almost 8 years ago

10.3389/fcell.2021.593677

The Cancer-Testis Long Non-coding RNA PCAT6 Facilitates the Malignant Phenotype of Ovarian Cancer by Sponging miR-143-3p
Cited by: 6
Author(s): Xiaofang Tan, Yang Shao, Yue Teng, Siyu Liu, Weijian Li, Lu Xue, Yuepeng Cao, Chongqi Sun, Jinhong Zhang, Jing Han, Xiaoli Wu, Hanzi Xu, Kaipeng Xie
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-16611-y

OCT4 supports extended LIF-independent self-renewal and maintenance of transcriptional and epigenetic networks in embryonic stem cells
Cited by: 10
Author(s): Runsheng He, Besa Xhabija, Batool Al‐Qanber, Benjamin L. Kidder
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-16472-5

Identification of a histone family gene signature for predicting the prognosis of cervical cancer patients
Cited by: 42
Author(s): Xiaofang Li, Run Tian, Hugh Gao, Yongkang Yang, Bryan R.G. Williams, Michael P. Gantier, Nigel A.J. McMillan, Dakang Xu, Yiqun Hu, Yue Gao
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-16930-0

MALE STERILE6021 (MS6021) is required for the development of anther cuticle and pollen exine in maize
Cited by: 27
Author(s): Youhui Tian, Senlin Xiao, Juan Liu, Yamuna Somaratne, Hua Zhang, Mingming Wang, Huairen Zhang, Li Zhao, Huabang Chen
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-17140-4

Transcriptome analysis of watermelon (Citrullus lanatus) fruits in response to Cucumber green mottle mosaic virus (CGMMV) infection
Cited by: 41
Author(s): Xiaodong Li, Mengnan An, Zihao Xia, Xiaojiao Bai, Yuanhua Wu
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-17751-x

The transcriptome of Mycobacterium tuberculosis in a lipid-rich dormancy model through RNAseq analysis
Cited by: 34
Author(s): Diana A. Aguilar-Ayala, Laurentijn Tilleman, Filip Van Nieuwerburgh, Dieter Deforce, Juan Carlos Palomino, Peter Vandamme, Jorge A. González-y-Merchand, Anandi Martin
Software Mentions: 1
Published: almost 9 years ago

10.3389/fcell.2021.727353

Multiomics Analysis of Neuroblastoma Cells Reveals a Diversity of Malignant Transformations
Cited by: 2
Author(s): Milda Narmontė, Povilas Gibas, Kristina Daniūnaitė, Juozas Gordevičius, Edita Kriukienė
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2021.704341

NAT10-Mediated N4-Acetylcytidine of RNA Contributes to Post-transcriptional Regulation of Mouse Oocyte Maturation in vitro
Cited by: 11
Author(s): Yuting Xiang, Chuanchuan Zhou, Yanyan Zeng, Qi Guo, Jiana Huang, Taibao Wu, Jiawen Liu, Qiqi Liang, Haitao Zeng, Xiaoyan Liang
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2019.00337

mTORC1-Rps15 Axis Contributes to the Mechanisms Underlying Global Translation Reduction During Senescence of Mouse Embryonic Fibroblasts
Cited by: 4
Author(s): Su Wu, Siyao Xu, Ruofei Li, Kecheng Li, Xiaoqin Zhong, Yingying Li, Zhifen Zhou, Yi Liu, Ran Feng, Jianfei Zheng, Zhou Songyang, Feng Liu
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-18607-0

Differentially expressed microRNAs between cattleyak and yak testis
Cited by: 23
Author(s): Cheng Xu, Shan Wu, Wangsheng Zhao, TserangDonko Mipam, Jingbo Liu, Wenjing Liu, Chuanping Yi, Mujahid Ali Shah, Shumin Yu, Xin Cai
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-018-19200-9

Maternal whole blood cell miRNA-340 is elevated in gestational diabetes and inversely regulated by glucose and insulin
Cited by: 37
Author(s): Laura Stirm, Peter Huypens, Steffen Sass, Richa Batra, Louise Fritsche, Sara Y. Brucker, Harald Abele, Anita M. Hennige, Fabian J. Theis, Johannes Beckers, Martin Hrabé de Angelis, Andreas Fritsche, Hans‐Ulrich Häring, Harald Staiger
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-018-19837-6

Persistent activation of interlinked type 2 airway epithelial gene networks in sputum-derived cells from aeroallergen-sensitized symptomatic asthmatics
Cited by: 15
Author(s): Anya C. Jones, Niamh M. Troy, Elisha White, Elysia M. Hollams, Alexander M. Gout, Kak-Ming Ling, Anthony Kicic, Stephen M. Stick, Peter D. Sly, Patrick G. Holt, Graham L. Hall, Anthony Bosco
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-018-19954-2

Different milk diets have substantial effects on the jejunal mucosal immune system of pre-weaning calves, as demonstrated by whole transcriptome sequencing
Cited by: 18
Author(s): H.M. Hammon, D. Frieten, C. Gerbert, Christian Koch, G. Dusel, Rosemarie Weikard, Christa Kühn
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.17321

Inhibition of stress-inducible HSP70 impairs mitochondrial proteostasis and function
Cited by: 31
Author(s): Julia I-Ju Leu, Thibaut Barnoud, Gao Zhang, Tian Tian, Zhi Wei, Meenhard Herlyn, Maureen E. Murphy, Donna L. George
Software Mentions: 1
Published: over 9 years ago

10.3389/fcell.2021.713503

Establishment of Mouse Primed Stem Cells by Combination of Activin and LIF Signaling
Cited by: 2
Author(s): Mengyi Wei, Yanglin Chen, Chaoyue Zhao, Zheng Li, Baojiang Wu, Chen Chen, Xihe Li, Siqin Bao
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-21525-4

Molecular characterization of colorectal adenomas with and without malignancy reveals distinguishing genome, transcriptome and methylome alterations
Cited by: 35
Author(s): Brooke R. Druliner, Panwen Wang, Taejeong Bae, Saurabh Baheti, Seth W. Slettedahl, Douglas W. Mahoney, Nikolaos Vasmatzis, Hang Xu, Min‐Soo Kim, Matthew A. Bockol, Daniel R. O’Brien, Diane E. Grill, Nathaniel D. Warner, Miguel Munoz-Gomez, Kimberlee Kossick, Ruth A. Johnson, Mohamad Mouchli, Donna Felmlee-Devine, Jill Washechek-Aletto, Thomas C. Smyrk, Ann L. Oberg, Junwen Wang, Nicholas Chia, Alexej Abyzov, David A. Ahlquist, Lisa A. Boardman
Software Mentions: 1
Published: over 8 years ago

10.1186/s12967-018-1637-x

Molecular network-based identification of competing endogenous RNAs and mRNA signatures that predict survival in prostate cancer
Cited by: 36
Author(s): Ning Xu, Yupeng Wu, Hubin Yin, Xue-Yi Xue, Xin Gou
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-21371-4

Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy
Cited by: 28
Author(s): María Carolina Gallego Iradi, Judy C. Triplett, James Thomas, Rachel Davila, Anthony M Crown, Hilda Brown, Jada Lewis, Maurice S. Swanson, Guilian Xu, Edgardo Rodríguez-Lebrón, David R. Borchelt
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.17506

A five-long non-coding RNA signature to improve prognosis prediction of clear cell renal cell carcinoma
Cited by: 27
Author(s): Da Shi, Qinghua Qu, Qimeng Chang, Yilin Wang, Yan Gui, Dong Dong
Software Mentions: 1
Published: over 9 years ago

10.3389/fcell.2020.00527

Transcriptome Characterization of Repressed Embryonic Myogenesis Due to Maternal Calorie Restriction
Cited by: 2
Author(s): Jun He, Ying He, Bing Yu, Xuelian Wang, Shuai Chen
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-23714-7

Vitamin C promotes apoptosis in breast cancer cells by increasing TRAIL expression
Cited by: 61
Author(s): David W. Sant, Sushmita Mustafi, Christopher B. Gustafson, Joshua Chen, Joyce M. Slingerland, Gaofeng Wang
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.18833

The molecular characterization of porcine egg precursor cells
Cited by: 10
Author(s): Te-Sha Tsai, Jacqueline L. Johnson, Yvonne A.R. White, Justin C. St. John
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.18234

Cell lines generated from a chronic lymphocytic leukemia mouse model exhibit constitutive Btk and Akt signaling
Cited by: 17
Author(s): Simar Pal Singh, Saravanan Y. Pillai, Marjolein J. W. de Bruijn, Ralph Stadhouders, Odilia B. J. Corneth, Henk-Jan van den Ham, Alice F. Muggen, Wilfred F. J. van IJcken, Erik Slinger, Annemieke Kuil, Marcel Spaargaren, Arnon P. Kater, Anton W. Langerak
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-24284-4

Measurement of metabolite variations and analysis of related gene expression in Chinese liquorice (Glycyrrhiza uralensis) plants under UV-B irradiation
Cited by: 33
Author(s): Xiao Zhang, Xiaoli Ding, Yaxi Ji, Shouchuang Wang, Yingying Chen, Jie Luo, Yingbai Shen, Peng Li
Software Mentions: 1
Published: over 8 years ago

10.3389/fcell.2021.631413

Role of VEGFR2 in Mediating Endoplasmic Reticulum Stress Under Glucose Deprivation and Determining Cell Death, Oxidative Stress, and Inflammatory Factor Expression
Cited by: 2
Author(s): Bohan Xu, Leocadia Zhou, Qishan Chen, Jianing Zhang, Lijuan Huang, Shasha Wang, Zhimin Ye, Xianyue Ren, Yu Cai, Lasse D. Jensen, Weirong Chen, Xuri Li, Rong Ju
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.19532

Integration of genomic, transcriptomic and functional profiles of aggressive osteosarcomas across multiple species
Cited by: 12
Author(s): Lara E. Davis, Sophia Jeng, Matthew N. Svalina, Elaine Huang, Janét Pittsenbarger, Emma L. Cantor, Noah Berlow, Bernard Séguin, Atiya Mansoor, Shannon K. McWeeney, Charles Keller
Software Mentions: 1
Published: over 9 years ago

10.3389/fcell.2021.641618

Implementation of CRISPR/Cas9 Genome Editing to Generate Murine Lung Cancer Models That Depict the Mutational Landscape of Human Disease
Cited by: 18
Author(s): Oliver Hartmann, Michaela Reissland, Carina R. Maier, Thomas Fischer, Cristian Prieto-Garcia, Apoorva Baluapuri, Jessica Denise Schwarz, W. Schmitz, Martín Garrido‐Rodriguez, Nikolett Pahor, Clare C. Davies, Florian Bassermann, Amir Orian, Elmar Wolf, Almut Schulze, Marco A. Calzado, Mathias T. Rosenfeldt, Markus E. Diefenbacher
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-64288-7

Transcriptome profile analysis of two Vicia faba cultivars with contrasting salinity tolerance during seed germination
Cited by: 19
Author(s): Fangwen Yang, Hongwei Chen, Changyan Liu, Li Li, Liangjun Liu, Xuesong Han, Zhengjie Wan, Aihua Sha
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2020.577221

Ulcerative Colitis-Derived Colonoid Culture: A Multi-Mineral-Approach to Improve Barrier Protein Expression
Cited by: 13
Author(s): Muhammad N. Aslam, Shannon D. McClintock, Durga Attili, Shailja Pandya, Humza Rehman, Daniyal M. Nadeem, Mohamed Ali H Jawad-Makki, Areeba H. Rizvi, Maliha M Berner, Michael K. Dame, D. Kim Turgeon, James Varani
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-64022-3

Transcriptome profiling reveals insertional mutagenesis suppressed the expression of candidate pathogenicity genes in honeybee fungal pathogen, Ascosphaera apis
Cited by: 3
Author(s): Awraris Getachew, Tessema Aynalem Abejew, Jiangli Wu, Jin Xu, Yu Hou, Jian Tan, Peng-Jie Wu, Yan Tu, Weipeng Kang, Zheng Wang, Shufa Xu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-64890-9

Transcriptomic evidence that insulin signalling pathway regulates the ageing of subterranean termite castes
Cited by: 13
Author(s): Haroon, Xiaoming Ma, Yuxin Li, Hongxin Zhang, Qing Liu, Xiaoqing Su, Lianxi Xing
Software Mentions: 1
Published: over 6 years ago

10.1186/s12967-021-02857-8

Identifying the functions of two biomarkers in human oligodendrocyte progenitor cell development
Cited by: 4
Author(s): Huixia Zhou, HE Ya, Zhaoyan Wang, Qian Wang, Caiyan Hu, Xiaohua Wang, Shan Lu, Ké Li, Ye Yang, Zuo Luan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-65536-6

Opposite Roles of the JMJD1A Interaction Partners MDFI and MDFIC in Colorectal Cancer
Cited by: 16
Author(s): Shushan Yuan, Yongming Li, Sangphil Oh, Bin Zhang, Willard M. Freeman, Sook Shin, Ralf Janknecht
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.18279

LncRNA-SVUGP2 suppresses progression of hepatocellular carcinoma
Cited by: 18
Author(s): Jiangfeng Hu, Chenlin Song, Bensong Duan, Xiaoyan Zhang, Dongliang Li, Liang Zhu, Hengjun Gao
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-66469-w

Transcriptomic study in women with trisomy 21 identifies a possible role of the GTPases of the immunity-associated proteins (GIMAP) in the protection of breast cancer
Cited by: 13
Author(s): André Mégarbané, David Piquemal, Anne-Sophie Rebillat, Samantha Stora, Fabien Pierrat, Roman Bruno, Florian Noguier, Clotilde Mircher, Aimé Ravel, Marie Vilaire-Meunier, Sophie Durand, Gérard Lefranc
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-66500-0

Transcriptome analyses suggest that changes in fungal endophyte lifestyle could be involved in grapevine bud necrosis
Cited by: 13
Author(s): Thales Henrique Cherubino Ribeiro, Christiane Noronha Fernandes-Brum, C. R. de Souza, Frédérico Alcântara Novelli Dias, Osmar de Almeida-Junior, Murilo de Albuquerque Regina, Kellen Kauanne Pimenta de Oliveira, Gabriel Lasmar dos Reis, Larissa Maia de Oliveira, Fernanda de Paula Fernandes, Laurent Torregrosa, Jorge Teodoro de Souza, Antônio Chalfun-Júnior
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-66675-6

Transcriptome profiling of the flowering transition in saffron (Crocus sativus L.)
Cited by: 23
Author(s): Jing Hu, Yuping Liu, Xiaohui Tang, Huajing Rao, Chaoxiang Ren, Chen Jiang, Qinghua Wu, Yi Jiang, Fuchang Geng, Jin Pei
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-66021-w

Functional shell matrix proteins tentatively identified by asymmetric snail shell morphology
Cited by: 11
Author(s): Akito Ishikawa, Keisuke Shimizu, Yukinobu Isowa, Takeshi Takeuchi, Rongjun Zhao, Keiji Kito, Manabu Fujie, Noriyuki Satoh, Kazuhiko Endo
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-64257-0

Core Binding Factors are essential for ovulation, luteinization, and female fertility in mice
Cited by: 10
Author(s): Somang Lee-Thacker, Hayce Jeon, Yohan Choi, Ichiro Taniuchi, Takeshi Takarada, Yukio Yoneda, Che Myong Ko, Misung Jo
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12113090

USP1 Regulates TAZ Protein Stability Through Ubiquitin Modifications in Breast Cancer
Cited by: 29
Author(s): Ashley L. Mussell, He Shen, Yanmin Chen, Michalis Mastri, Kevin H. Eng, Wiam Bshara, Costa Frangou, Jianmin Zhang
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2019.00249

MiR-144-3p Enhances Cardiac Fibrosis After Myocardial Infarction by Targeting PTEN
Cited by: 38
Author(s): Xiaolong Yuan, Jinchun Pan, Liang Wen, Baoyong Gong, Jiaqi Li, Hongbin Gao, Weijiang Tan, Shi Liang, Hao Zhang, Xilong Wang
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.21087

Identification of glycerol-3-phosphate dehydrogenase 1 as a tumour suppressor in human breast cancer
Cited by: 28
Author(s): Cefan Zhou, Jing Yu, Ming Wang, Jing Yang, Hui Xiong, Huang Huang, Dongli Wu, Shiyu Hu, Yefu Wang, Xing-Zhen Chen, Jingfeng Tang
Software Mentions: 1
Published: about 9 years ago

10.3389/fcvm.2018.00016

Temporal Dynamics of Gene Expression During Endothelial Cell Differentiation From Human iPS Cells: A Comparison Study of Signalling Factors and Small Molecules
Cited by: 7
Author(s): Heini Belt, Jonna Koponen, Tuija Kekarainen, Katja A. Puttonen, Petri Mäkinen, Henri Niskanen, Joni Oja, Galina Wirth, Jari Koistinaho, Minna U. Kaikkonen, Seppo Ylä‐Herttuala
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-67476-7

Co-expression based cancer staging and application
Cited by: 7
Author(s): Xiangchun Yu, Sha Cao, Yi Zhou, Zhezhou Yu, Ying Xu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-67635-w

Genomics and transcriptomics analysis reveals the mechanism of isobutanol tolerance of a laboratory evolved Lactococcus lactis strain
Cited by: 7
Author(s): Jaya Gupta, Sagar Thapa, Madhulika Verma, Ritu Som, Kakali Mukherjee
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-66387-x

Combined PLT and NE to predict the prognosis of patients with locally advanced cervical cancer
Cited by: 5
Author(s): Han Wang, Wen-Ming Chen, Yong-Heng Zhou, Jianping Shi, Yongzhen Huang, Wenjie Wang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-68339-x

Transcriptional and in silico analyses of MIF cytokine and TLR signalling interplay in the LPS inflammatory response of Ciona robusta
Cited by: 9
Author(s): Vincenzo Arizza, Angela Bonura, Laura La Paglia, Alfonso Urso, Annalisa Pinsino, Aiti Vizzini
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13122957

WWOX Loses the Ability to Regulate Oncogenic AP-2γ and Synergizes with Tumor Suppressor AP-2α in High-Grade Bladder Cancer
Cited by: 8
Author(s): Damian Kołat, Żaneta Kałuzińska, Andrzej K. Bednarek, Elżbieta Płuciennik
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2020.00679

IGF2BP3 May Contributes to Lung Tumorigenesis by Regulating the Alternative Splicing of PKM
Cited by: 24
Author(s): Xing Huang, Jun Zhang, Yuming Jiang, Xin Liao, Liya Hu, Yuanyuan Fang, Yuting Zhang, Hao Zeng, Hua Wu, Jian Liu, Tie-jun Yin
Software Mentions: 1
Published: about 6 years ago

10.3389/fbioe.2020.00075

MiR-29c-3p Suppresses the Migration, Invasion and Cell Cycle in Esophageal Carcinoma via CCNA2/p53 Axis
Cited by: 18
Author(s): Haiyong Wang, Linhai Fu, Desheng Wei, Bin Wang, Chu Zhang, Ting Zhu, Zhifeng Ma, Zhupeng Li, Yifan Wu, Guanzhen Yu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-69434-9

Comparative transcriptome analysis of Sclerotinia sclerotiorum revealed its response mechanisms to the biological control agent, Bacillus amyloliquefaciens
Cited by: 18
Author(s): Xiaoxiang Yang, Lei Zhang, Yunjia Xiang, Lei Du, Xiaoqin Huang, Yong Liu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-67760-6

A cluster of metabolism-related genes predict prognosis and progression of clear cell renal cell carcinoma
Cited by: 21
Author(s): Mei Liu, Qiufeng Pan, Ruihai Xiao, Yi Yu, Wenbao Lu, Longwang Wang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-68637-4

Cellular, mitochondrial and molecular alterations associate with early left ventricular diastolic dysfunction in a porcine model of diabetic metabolic derangement
Cited by: 14
Author(s): Ilkka Heinonen, Oana Sorop, Bas M. van Dalen, Rob C I Wüst, Jens van de Wouw, Vincent J. de Beer, Yanti Octavia, Richard van Duin, Youri Hoogstrate, Lau Blonden, Milla Alkio, Katja Anttila, Andrew Stubbs, Jolanda van der Velden, Daphne Merkus, Dirk J. Duncker
Software Mentions: 1
Published: about 6 years ago

10.3389/fnagi.2018.00024

Plasma Exosomal miRNA-122-5p and miR-300-3p as Potential Markers for Transient Ischaemic Attack in Rats
Cited by: 48
Author(s): Dongbin Li, Jingli Liu, Wei Wang, Xiumei Luo, Xia Zhou, LI Jin-pin, Xiaoli Cao, Xiaoyan Long, Jia-Gui Chen, Chao Qin
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-70484-2

Construct a circRNA/miRNA/mRNA regulatory network to explore potential pathogenesis and therapy options of clear cell renal cell carcinoma
Cited by: 50
Author(s): Shengjie Bai, Yinying Wu, Yanli Yan, Shuai Shao, Jiangzhou Zhang, Jiaxin Liu, Baojun Hui, Rui Li, Hailin Ma, Xiaozhi Zhang, Juan Ren
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-70932-z

Elucidation of resistance signaling and identification of powdery mildew resistant mapping loci (ClaPMR2) during watermelon-Podosphaera xanthii interaction using RNA-Seq and whole-genome resequencing approach
Cited by: 6
Author(s): Mihir Mandal, Haktan Suren, Chandrasekar S. Kousik
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-71050-6

RNA-Seq analysis of differentially expressed genes of Staphylococcus epidermidis isolated from postoperative endophthalmitis and the healthy conjunctiva
Cited by: 3
Author(s): Qing Liu, Nan Chen, Huabo Chen, Yusen Huang
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.23290

Comprehensive transcriptional landscape of porcine cardiac and skeletal muscles reveals differences of aging
Cited by: 32
Author(s): Jianning Chen, Qin Zou, Daojun Lv, Yingying Wei, Muhammad Ali Raza, Chen Yan, Peilin Li, Xiaoyu Xi, Huaming Xu, Anxiang Wen, Li Zhu, Guoqing Tang, Mingzhou Li, Anan Jiang, Yihui Liu, Yuhua Fu, Yanzhi Jiang, Xuewei Li
Software Mentions: 1
Published: almost 9 years ago

10.3389/fnagi.2021.646729

Krüppel-Like Factor 6 Silencing Prevents Oxidative Stress and Neurological Dysfunction Following Intracerebral Hemorrhage via Sirtuin 5/Nrf2/HO-1 Axis
Cited by: 7
Author(s): Jia Sun, Jinzhong Cai, Junhui Chen, Siqiaozhi Li, Xin Liao, Yijie He, Xudong Chen, Sean Hu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-72117-0

A central role for the transcriptional regulator VtlR in small RNA-mediated gene regulation in Agrobacterium tumefaciens
Cited by: 9
Author(s): James A. Budnick, Lauren M. Sheehan, Miranda. J. Ginder, Kevin C. Failor, Julia. M. Perkowski, John. F. Pinto, Kirsten A. Kohl, Lin Kang, Pawel Michalak, Li Luo, Jason E. Heindl, Clayton C. Caswell
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-72448-y

Proteasomal degradation of polycomb-group protein CBX6 confers MMP-2 expression essential for mesothelioma invasion
Cited by: 6
Author(s): Katsuya Sakai, Takumi Nishiuchi, Shoichiro Tange, Yoshinori Suzuki, Seiji Yano, Minoru Terashima, Takeshi Suzuki, Kunio Matsumoto
Software Mentions: 1
Published: about 6 years ago

10.1002/fsn3.1194

Combining of transcriptome and metabolome analyses for understanding the utilization and metabolic pathways of Xylo‐oligosaccharide inBifidobacterium adolescentisATCC 15703
Cited by: 14
Author(s): Jian Yang, Qilong Tang, Lei Xu, Zhijiang Li, Yina Ma, Di Yao
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-74049-1

De novo transcriptome analysis of the critically endangered alpine Himalayan herb Nardostachys jatamansi reveals the biosynthesis pathway genes of tissue-specific secondary metabolites
Cited by: 8
Author(s): Nisha Dhiman, Anil Kumar, Dinesh Kumar, Amita Bhattacharya
Software Mentions: 1
Published: about 6 years ago

10.1002/fsn3.1897

Juice from Fructus Rosae Roxburghii normalizes blood lipids in mice with diet‐induced hyperlipidemia* †
Cited by: 2
Author(s): Pingping Song, Xiangchun Shen
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-74789-0

Metabolomic and transcriptomic analyses reveal the regulation of pigmentation in the purple variety of Dendrobium officinale
Cited by: 23
Author(s): Xinqiao Zhan, Jufeng Qi, Bin Zhou, Bizeng Mao
Software Mentions: 1
Published: about 6 years ago

10.15252/embr.201948029

SUMOylated SNF2PH promotes variant surface glycoprotein expression in bloodstream trypanosomes
Cited by: 12
Author(s): Andreu Saura, Paula Ana Iribarren, Domingo I. Rojas-Barros, Jean-Mathieu Bart, Diana López‐Farfán, Eduardo Andrés-León, Isabel Vidal-Cobo, Cordula Boehm, Vanina E. Álvarez, Mark C. Field, Miguel Navarro
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-73164-3

Assessing the prognostic value of stemness-related genes in breast cancer patients
Cited by: 5
Author(s): Wenjie Wang, Han Wang, Meng-Sen Wang, Yongzhen Huang, Yuan Ma, Jie Qi, Jianping Shi, Wei Li
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-75537-0

Enhanced FGFR3 activity in postmitotic principal neurons during brain development results in cortical dysplasia and axonal tract abnormality
Cited by: 5
Author(s): Jui-Yen Huang, Bruna Baumgarten Krebs, Marisha Lynn Miskus, May Lin Russell, Eamonn Patrick Duffy, Jason Michael Graf, Hui-Chen Lu
Software Mentions: 1
Published: almost 6 years ago

10.15252/emmm.202012409

Psoriatic skin inflammation is promoted by c‐Jun/AP‐1‐dependent CCL2 and IL‐23 expression in dendritic cells
Cited by: 35
Author(s): Philipp Novoszel, Martin Holcmann, Gabriel Stulnig, Cristiano De Sa Fernandes, Victoria Zyulina, Izabela Borek, Markus Linder, Alexandra Bogusch, Barbara Drobits, Thomas Bauer, Carmen Tam‐Amersdorfer, Patrick M. Brunner, Georg Stary, Latifa Bakiri, Erwin F. Wagner, Herbert Strobl, Maria Sibilia
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-76171-6

Characterization of transcriptional response of Lactobacillus plantarum under acidic conditions provides insight into bacterial adaptation in fermentative environments
Cited by: 6
Author(s): Sera Jung, Jong Hee Lee
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.23534

Analysis of the circular RNA transcriptome in endometrial cancer
Cited by: 49
Author(s): Bei Jun Chen, Frances L. Byrne, Konii Takenaka, Susan C. Modesitt, Ellen M. Olzomer, James D. Mills, Rhonda Farrell, Kyle L. Hoehn, Michael Janitz
Software Mentions: 1
Published: almost 9 years ago

10.15252/emmm.201606493

Activin promotes skin carcinogenesis by attraction and reprogramming of macrophages
Cited by: 24
Author(s): Maria Antsiferova, Aleksandra Piwko‐Czuchra, Michael Cangkrama, Mateusz S. Wietecha, Dilara Şahin, Katharina Birkner, Valerie C Amann, Mitchell P. Levesque, Daniel Hohl, Reinhard Dummer, Sabine Werner
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-020-74594-9

Involvement of neutrophils in machineries underlying the rupture of intracranial aneurysms in rats
Cited by: 19
Author(s): Mika Kushamae, Haruka Miyata, Makoto Shirai, Kampei Shimizu, Mieko Oka, Hirokazu Koseki, Yu Abekura, Isao Ono, Kazuhiko Nozaki, Tohru Mizutani, Tomohiro Aoki
Software Mentions: 1
Published: almost 6 years ago

10.15252/emmm.202013524

Menin‐regulated Pbk controls high fat diet‐induced compensatory beta cell proliferation
Cited by: 6
Author(s): Jian Ma, Bowen Xing, Yan Cao, Xin He, Kate E Bennett, Chao Tong, Chiying An, Taylor Hojnacki, Zijie Feng, Sunbin Deng, Sunbin Ling, Gengchen Xie, Yuan Wu, Yue Ren, Ming Yu, Bryson W. Katona, Hongzhe Li, Ali Naji, Xianxin Hua
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-77177-w

Transcriptome analyses reveals the dynamic nature of oil accumulation during seed development of Plukenetia volubilis L.
Cited by: 6
Author(s): Lu Guo, Zhihua Wu, Peng Yan, Xiuhua Shang, Yi Xie, R. J. Arnold
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-77598-7

Functional characterisation of the transcriptome from leaf tissue of the fluoroacetate-producing plant, Dichapetalum cymosum, in response to mechanical wounding
Cited by: 7
Author(s): Selisha A. Sooklal, Phelelani T. Mpangase, Mihai-Silviu Tomescu, Shaun Aron, Scott Hazelhurst, Robert H. Archer, Karl Rumbold
Software Mentions: 1
Published: almost 6 years ago

10.15252/emmm.202114045

Asymptomatic COVID‐19: disease tolerance with efficient anti‐viral immunity against SARS‐CoV‐2
Cited by: 31
Author(s): Yi‐Hao Chan, Siew‐Wai Fong, Chek-Meng Poh, Guillaume Carissimo, Nicholas Kim‐Wah Yeo, Siti Naqiah Amrun, Yun Shan Goh, Jackwee Lim, Weili Xu, Rhonda Sin‐Ling Chee, Anthony Torres‐Ruesta, Cheryl Yi‐Pin Lee, Matthew Zirui Tay, Zi Wei Chang, Wen-Hsin Lee, Bei Wang, Seow‐Yen Tan, Shirin Kalimuddin, Barnaby Edward Young, Yee‐Sin Leo, Cheng‐I Wang, Bernett Lee, Olaf Rötzschke, David C. Lye, Laurent Rénia, Lisa F. P. Ng
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.24260

ALK is a critical regulator of the MYC-signaling axis in ALK positive lung cancer
Cited by: 21
Author(s): Amanda B. Pilling, Jihye Kim, Adriana Estrada-Bernal, Qiong Zhou, Anh‐Tuan Le, Katherine R. Singleton, Lynn E. Heasley, Aik Choon Tan, James DeGregori, Robert C. Doebele
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-020-77293-7

Comparative transcriptome analysis implied a ZEP paralog was a key gene involved in carotenoid accumulation in yellow-fleshed sweetpotato
Cited by: 13
Author(s): Koichi Suematsu, Masaru Tanaka, Rie Kurata, Kai Yu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-78976-x

Early pregnancy maternal progesterone administration alters pituitary and testis function and steroid profile in male fetuses
Cited by: 13
Author(s): Katarzyna Siemienowicz, Yili Wang, Magda Marečková, Junko Nio‐Kobayashi, Paul A. Fowler, Michael T. Rae, W. Colin Duncan
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-78781-6

Identifying transcription factors that reduce wood recalcitrance and improve enzymatic degradation of xylem cell wall in Populus
Cited by: 6
Author(s): Chiaki Hori, Naoki Takata, Pui Ying Lam, Yuki Tobimatsu, Soichiro Nagano, Jenny C. Mortimer, Dan Cullen
Software Mentions: 1
Published: almost 6 years ago

Projects: bioconductor: edgeR

Science Score: 100/100

Bonuses:

Papers Mentioning edgeR 6,568